Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033042.t1 | XP_013458020.1 | 97.2 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 8.60E-175 | 622.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033042.t1 | P50288 | 78.5 | 326 | 61 | 3 | 2 | 321 | 3 | 325 | 8.2e-142 | 504.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033042.t1 | A0A072URR5 | 97.2 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 6.2e-175 | 622.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033042 | MS.gene32919 | PPI |
| MS.gene033042 | MS.gene00469 | PPI |
| MS.gene033042 | MS.gene012937 | PPI |
| MS.gene033042 | MS.gene63165 | PPI |
| MS.gene033042 | MS.gene38687 | PPI |
| MS.gene033042 | MS.gene058167 | PPI |
| MS.gene044081 | MS.gene033042 | PPI |
| MS.gene033042 | MS.gene015131 | PPI |
| MS.gene033042 | MS.gene34100 | PPI |
| MS.gene033042 | MS.gene24445 | PPI |
| MS.gene033042 | MS.gene062544 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033042.t1 | MTR_4g109900 | 97.222 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 0.0 | 650 |
| MS.gene033042.t1 | MTR_4g109920 | 92.308 | 325 | 24 | 1 | 1 | 324 | 1 | 325 | 0.0 | 612 |
| MS.gene033042.t1 | MTR_1g018760 | 58.385 | 322 | 129 | 1 | 2 | 318 | 3 | 324 | 1.18e-131 | 378 |
| MS.gene033042.t1 | MTR_3g102370 | 58.696 | 322 | 125 | 2 | 2 | 318 | 3 | 321 | 1.73e-129 | 372 |
| MS.gene033042.t1 | MTR_1g094030 | 58.824 | 323 | 123 | 2 | 1 | 318 | 2 | 319 | 3.19e-128 | 369 |
| MS.gene033042.t1 | MTR_8g031580 | 30.686 | 277 | 161 | 7 | 5 | 253 | 23 | 296 | 1.71e-26 | 107 |
| MS.gene033042.t1 | MTR_8g031580 | 30.686 | 277 | 161 | 7 | 5 | 253 | 23 | 296 | 4.05e-26 | 107 |
| MS.gene033042.t1 | MTR_3g008180 | 29.134 | 254 | 151 | 9 | 66 | 294 | 77 | 326 | 1.21e-16 | 80.1 |
| MS.gene033042.t1 | MTR_3g008180 | 28.139 | 231 | 137 | 9 | 89 | 294 | 1 | 227 | 1.82e-12 | 66.6 |
| MS.gene033042.t1 | MTR_8g031580 | 26.904 | 197 | 117 | 5 | 84 | 253 | 1 | 197 | 2.02e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033042.t1 | AT5G08100 | 72.586 | 321 | 79 | 2 | 1 | 320 | 2 | 314 | 8.72e-168 | 469 |
| MS.gene033042.t1 | AT3G16150 | 57.453 | 322 | 132 | 1 | 2 | 318 | 3 | 324 | 7.91e-132 | 378 |
| MS.gene033042.t1 | AT5G08100 | 73.554 | 242 | 56 | 1 | 79 | 320 | 1 | 234 | 2.37e-126 | 361 |
| MS.gene033042.t1 | AT4G00590 | 26.331 | 338 | 205 | 8 | 5 | 300 | 15 | 350 | 3.17e-21 | 94.0 |
| MS.gene033042.t1 | AT4G00590 | 26.220 | 328 | 203 | 9 | 5 | 300 | 15 | 335 | 1.92e-17 | 82.8 |
Find 78 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAATGTGGTGCTGTTTC+TGG | 0.170440 | 8.2:+16112569 | MS.gene033042:CDS |
| CAGTCTTGGTAGTATCATTT+TGG | 0.221895 | 8.2:-16113576 | None:intergenic |
| TGTTGTCAATGCTGTTTCTT+TGG | 0.230934 | 8.2:+16112601 | MS.gene033042:CDS |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.251608 | 8.2:+16112616 | MS.gene033042:CDS |
| TGCTGTTTCTTTGGCTCGTT+TGG | 0.258446 | 8.2:+16112610 | MS.gene033042:CDS |
| TGAAATGGAAGCTTCTATTA+TGG | 0.283828 | 8.2:+16112535 | MS.gene033042:CDS |
| AACATTCCTGGTGTATTATA+AGG | 0.283990 | 8.2:-16113961 | None:intergenic |
| CATTTCAACCGTGCCTTTGT+TGG | 0.295712 | 8.2:-16112519 | None:intergenic |
| TGAGAGCTTTGACACCAATT+TGG | 0.303094 | 8.2:-16112254 | None:intergenic |
| AACAAAATGCTTGGTCGAAT+TGG | 0.323432 | 8.2:+16113709 | MS.gene033042:CDS |
| GAGCTTCTTCGCGTGGCTGA+TGG | 0.328197 | 8.2:-16112218 | None:intergenic |
| TTGGTTGCTGTGTCTGCTGC+TGG | 0.335367 | 8.2:+16113925 | MS.gene033042:CDS |
| AGCTTCTTCGCGTGGCTGAT+GGG | 0.349941 | 8.2:-16112217 | None:intergenic |
| CTCCGTCACTGCCTCCAAAT+TGG | 0.364282 | 8.2:+16112240 | MS.gene033042:CDS |
| CAACAAAGGCACGGTTGAAA+TGG | 0.368413 | 8.2:+16112520 | MS.gene033042:CDS |
| TTATGTGCAGTTTCTGCAAC+AGG | 0.369596 | 8.2:+16113772 | MS.gene033042:CDS |
| AAATATTGAAAGACTAAATC+AGG | 0.382200 | 8.2:+16113393 | MS.gene033042:CDS |
| CGCATACCAAAGGGCACTCT+TGG | 0.383825 | 8.2:+16113901 | MS.gene033042:CDS |
| ACCAAAGGGCACTCTTGGTT+TGG | 0.387480 | 8.2:+16113906 | MS.gene033042:CDS |
| GGTATTCTGAGGTTGCAATT+TGG | 0.392513 | 8.2:+16114007 | MS.gene033042:CDS |
| ATTCAAAGGTCTTTCTCTAA+AGG | 0.406833 | 8.2:+16113852 | MS.gene033042:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.415599 | 8.2:+16113985 | MS.gene033042:CDS |
| CTAGCTTCAGCAACATCAAC+TGG | 0.443431 | 8.2:+16113676 | MS.gene033042:CDS |
| AGAAACTGCACATAATTCAT+TGG | 0.443619 | 8.2:-16113764 | None:intergenic |
| ATCAGGCAAAAGAAGCAGAT+AGG | 0.446556 | 8.2:+16113410 | MS.gene033042:CDS |
| GCACAAGCTCTAAACATTCC+TGG | 0.447190 | 8.2:-16113973 | None:intergenic |
| GTAGCACTACATGGCGGCGC+TGG | 0.455409 | 8.2:+16112168 | MS.gene033042:CDS |
| ACAGAAACGCCATTTGCTAA+TGG | 0.455853 | 8.2:+16113601 | MS.gene033042:CDS |
| ATTGGCGACACACCAATCAT+AGG | 0.465489 | 8.2:+16113727 | MS.gene033042:CDS |
| TGGCGTTTCTGTTTCAGTCT+TGG | 0.468537 | 8.2:-16113590 | None:intergenic |
| CGTCCCATGTTCACTTCCAC+TGG | 0.473587 | 8.2:+16112191 | MS.gene033042:CDS |
| TCAAAAGCTAAATAAATATG+AGG | 0.487507 | 8.2:-16112647 | None:intergenic |
| CCACACTTCAATGCCGGTAG+AGG | 0.493687 | 8.2:+16112485 | MS.gene033042:CDS |
| GCTAATGGTGATAGTCAACT+TGG | 0.494325 | 8.2:+16113616 | MS.gene033042:CDS |
| ATGGAAGCTTCTATTATGGA+TGG | 0.505013 | 8.2:+16112539 | MS.gene033042:CDS |
| TATGTTCCAGCACCTATGAT+TGG | 0.508692 | 8.2:-16113739 | None:intergenic |
| GCTTCCAGTGGAAGTGAACA+TGG | 0.509184 | 8.2:-16112195 | None:intergenic |
| GCAGTTTCTGCAACAGGGAT+AGG | 0.517760 | 8.2:+16113778 | MS.gene033042:CDS |
| ACCAAACCAAGAGTGCCCTT+TGG | 0.521596 | 8.2:-16113907 | None:intergenic |
| AAGAGATGTGGCTGCAATGA+TGG | 0.524648 | 8.2:+16113828 | MS.gene033042:CDS |
| CACCAATTTGGAGGCAGTGA+CGG | 0.530368 | 8.2:-16112242 | None:intergenic |
| TGACTATCACCATTAGCAAA+TGG | 0.534535 | 8.2:-16113610 | None:intergenic |
| GGCTGGGCAGTAGCACTACA+TGG | 0.540514 | 8.2:+16112159 | MS.gene033042:CDS |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.2:+16112454 | MS.gene033042:intron |
| CAAGTTCAACGACGTCTAGA+GGG | 0.545254 | 8.2:-16112290 | None:intergenic |
| GAGCTTTGACACCAATTTGG+AGG | 0.548680 | 8.2:-16112251 | None:intergenic |
| GAGCTTGTGCTACTGAAGAT+GGG | 0.553483 | 8.2:+16113986 | MS.gene033042:CDS |
| TCAGGCAAAAGAAGCAGATA+GGG | 0.554190 | 8.2:+16113411 | MS.gene033042:CDS |
| GTACATGAGCGCATACCAAA+GGG | 0.559392 | 8.2:+16113892 | MS.gene033042:CDS |
| AAAAGAAGCAGATAGGGTCC+AGG | 0.559600 | 8.2:+16113417 | MS.gene033042:CDS |
| GACACACCAATCATAGGTGC+TGG | 0.568481 | 8.2:+16113733 | MS.gene033042:CDS |
| GATAGTCAACTTGGAACTGT+TGG | 0.569724 | 8.2:+16113625 | MS.gene033042:CDS |
| CGTGGCTGATGGGCTTCCAG+TGG | 0.570298 | 8.2:-16112207 | None:intergenic |
| GACGTCTAGAGGGGCCATGT+TGG | 0.581967 | 8.2:-16112280 | None:intergenic |
| TGGAAGCTTCTATTATGGAT+GGG | 0.585002 | 8.2:+16112540 | MS.gene033042:CDS |
| GGTGAGAACAGAACCTCTAC+CGG | 0.586061 | 8.2:-16112498 | None:intergenic |
| AATATTCCACACTTCAATGC+CGG | 0.587397 | 8.2:+16112479 | MS.gene033042:CDS |
| ACAAGTTCAACGACGTCTAG+AGG | 0.588579 | 8.2:-16112291 | None:intergenic |
| TGTGTAGCTGTTGATAGCAA+TGG | 0.600794 | 8.2:+16113649 | MS.gene033042:CDS |
| TGTACATGAGCGCATACCAA+AGG | 0.603493 | 8.2:+16113891 | MS.gene033042:CDS |
| CCTCTACCGGCATTGAAGTG+TGG | 0.614928 | 8.2:-16112485 | None:intergenic |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.620892 | 8.2:-16112225 | None:intergenic |
| GGTTCTGTTCTCACCAACAA+AGG | 0.624233 | 8.2:+16112506 | MS.gene033042:CDS |
| GCTTCAGCAACATCAACTGG+TGG | 0.625484 | 8.2:+16113679 | MS.gene033042:CDS |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.2:+16112266 | MS.gene033042:CDS |
| GGATTAGTGAACAAAATGCT+TGG | 0.633330 | 8.2:+16113700 | MS.gene033042:CDS |
| TAGGCGAAGCACTAATACGC+GGG | 0.640412 | 8.2:+16113797 | MS.gene033042:CDS |
| TGTTCTCACCAACAAAGGCA+CGG | 0.646882 | 8.2:+16112511 | MS.gene033042:CDS |
| GCAATGCCTTATAATACACC+AGG | 0.652456 | 8.2:+16113955 | MS.gene033042:CDS |
| CGGGACAGTAGCAAGAGATG+TGG | 0.659071 | 8.2:+16113816 | MS.gene033042:CDS |
| AAGTTCAACGACGTCTAGAG+GGG | 0.663048 | 8.2:-16112289 | None:intergenic |
| TATGTGCAGTTTCTGCAACA+GGG | 0.671046 | 8.2:+16113773 | MS.gene033042:CDS |
| GATGGGAATACTATGAAATG+TGG | 0.679160 | 8.2:+16112557 | MS.gene033042:CDS |
| TACTGAAGATGGGTATTCTG+AGG | 0.680447 | 8.2:+16113996 | MS.gene033042:CDS |
| TGGGCAGTAGCACTACATGG+CGG | 0.691397 | 8.2:+16112162 | MS.gene033042:CDS |
| CTTCCAGTGGAAGTGAACAT+GGG | 0.696208 | 8.2:-16112194 | None:intergenic |
| GCTGCAATGATGGAATTCAA+AGG | 0.699018 | 8.2:+16113838 | MS.gene033042:CDS |
| ATAGGCGAAGCACTAATACG+CGG | 0.787645 | 8.2:+16113796 | MS.gene033042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATATTAAAATTTTGTT+TGG | - | chr8.2:16112974-16112993 | None:intergenic | 10.0% |
| !! | TATAAGATATTCAATATGAT+AGG | - | chr8.2:16113518-16113537 | None:intergenic | 15.0% |
| !! | AAAACTTAAGAAAATGAGAT+TGG | - | chr8.2:16112718-16112737 | None:intergenic | 20.0% |
| !! | AAATATTGAAAGACTAAATC+AGG | + | chr8.2:16113393-16113412 | MS.gene033042:CDS | 20.0% |
| !! | TCAAAAGCTAAATAAATATG+AGG | - | chr8.2:16112650-16112669 | None:intergenic | 20.0% |
| !! | TCATAATAATCATTGTTCAT+AGG | + | chr8.2:16112442-16112461 | MS.gene033042:intron | 20.0% |
| !! | TTTATCACTTTATGAAAACT+TGG | + | chr8.2:16112340-16112359 | MS.gene033042:intron | 20.0% |
| !!! | ATTCATTAACATTACCATTT+TGG | + | chr8.2:16112776-16112795 | MS.gene033042:intron | 20.0% |
| !!! | CATATTTATTTAGCTTTTGA+TGG | + | chr8.2:16112650-16112669 | MS.gene033042:CDS | 20.0% |
| !!! | TTTAGTCTTTCAATATTTTC+TGG | - | chr8.2:16113391-16113410 | None:intergenic | 20.0% |
| ! | ATATTCAATATGATAGGAGA+AGG | - | chr8.2:16113512-16113531 | None:intergenic | 25.0% |
| ! | ATCATATATCCTTATATTGC+AGG | + | chr8.2:16113330-16113349 | MS.gene033042:intron | 25.0% |
| ! | CAGAAGAAAATTCAAATAGA+CGG | - | chr8.2:16112407-16112426 | None:intergenic | 25.0% |
| ! | TAAATAATGATCGTAGTTTG+TGG | + | chr8.2:16113261-16113280 | MS.gene033042:intron | 25.0% |
| ! | TACTATGAAAGTTATATACC+TGG | - | chr8.2:16113438-16113457 | None:intergenic | 25.0% |
| ! | TATTCAATATGATAGGAGAA+GGG | - | chr8.2:16113511-16113530 | None:intergenic | 25.0% |
| ! | TCATATATCCTTATATTGCA+GGG | + | chr8.2:16113331-16113350 | MS.gene033042:intron | 25.0% |
| ! | TCATTAATGATTGTAGTTTG+TGG | + | chr8.2:16113291-16113310 | MS.gene033042:intron | 25.0% |
| !!! | TATTTTCTGGAGTAATGAAA+TGG | - | chr8.2:16113378-16113397 | None:intergenic | 25.0% |
| AACATTCCTGGTGTATTATA+AGG | - | chr8.2:16113964-16113983 | None:intergenic | 30.0% | |
| ACTATCGTGATTGAAAACAT+TGG | - | chr8.2:16113016-16113035 | None:intergenic | 30.0% | |
| AGAAAATTCAAATAGACGGT+AGG | - | chr8.2:16112403-16112422 | None:intergenic | 30.0% | |
| AGAAACTGCACATAATTCAT+TGG | - | chr8.2:16113767-16113786 | None:intergenic | 30.0% | |
| ATATATCCTTATATTGCAGG+GGG | + | chr8.2:16113333-16113352 | MS.gene033042:intron | 30.0% | |
| ATTCAAAGGTCTTTCTCTAA+AGG | + | chr8.2:16113852-16113871 | MS.gene033042:CDS | 30.0% | |
| CAAACAGTTTCCATATAAGA+TGG | - | chr8.2:16112867-16112886 | None:intergenic | 30.0% | |
| CAGCTTATTTCCATCTTATA+TGG | + | chr8.2:16112854-16112873 | MS.gene033042:intron | 30.0% | |
| CATATAAGATGGAAATAAGC+TGG | - | chr8.2:16112856-16112875 | None:intergenic | 30.0% | |
| CATATATCCTTATATTGCAG+GGG | + | chr8.2:16113332-16113351 | MS.gene033042:intron | 30.0% | |
| CTTTATGAAAACTTGGTATC+CGG | + | chr8.2:16112347-16112366 | MS.gene033042:intron | 30.0% | |
| GAATGCATATAGAAATTCAC+AGG | + | chr8.2:16113167-16113186 | MS.gene033042:intron | 30.0% | |
| TGAAATGGAAGCTTCTATTA+TGG | + | chr8.2:16112535-16112554 | MS.gene033042:CDS | 30.0% | |
| TTCATAGTACTAGTAGTAGT+AGG | + | chr8.2:16113449-16113468 | MS.gene033042:intron | 30.0% | |
| ! | AATGTTTTCAATCACGATAG+TGG | + | chr8.2:16113015-16113034 | MS.gene033042:intron | 30.0% |
| !! | TTGGTAGTATCATTTTGGAT+TGG | - | chr8.2:16113574-16113593 | None:intergenic | 30.0% |
| !!! | AGTATCATTTTGGATTGGTT+GGG | - | chr8.2:16113569-16113588 | None:intergenic | 30.0% |
| !!! | TAGTATCATTTTGGATTGGT+TGG | - | chr8.2:16113570-16113589 | None:intergenic | 30.0% |
| AACAAAATGCTTGGTCGAAT+TGG | + | chr8.2:16113709-16113728 | MS.gene033042:CDS | 35.0% | |
| AATATTCCACACTTCAATGC+CGG | + | chr8.2:16112479-16112498 | MS.gene033042:CDS | 35.0% | |
| ATGGAAGCTTCTATTATGGA+TGG | + | chr8.2:16112539-16112558 | MS.gene033042:CDS | 35.0% | |
| CAGTTAATTGTTCCTTAGAC+CGG | - | chr8.2:16112369-16112388 | None:intergenic | 35.0% | |
| CTAAGGAACAATTAACTGAG+AGG | + | chr8.2:16112371-16112390 | MS.gene033042:intron | 35.0% | |
| GAGAAGGGAAAAAACACATT+AGG | - | chr8.2:16113496-16113515 | None:intergenic | 35.0% | |
| GATGGGAATACTATGAAATG+TGG | + | chr8.2:16112557-16112576 | MS.gene033042:CDS | 35.0% | |
| TGACTATCACCATTAGCAAA+TGG | - | chr8.2:16113613-16113632 | None:intergenic | 35.0% | |
| TGGAAGCTTCTATTATGGAT+GGG | + | chr8.2:16112540-16112559 | MS.gene033042:CDS | 35.0% | |
| TGTATGTGATCAATCAAACG+TGG | + | chr8.2:16113073-16113092 | MS.gene033042:intron | 35.0% | |
| TTTCTACAAGTTCCCACAAA+CGG | - | chr8.2:16112805-16112824 | None:intergenic | 35.0% | |
| ! | AAATTCACAGGTTTCTGAGA+AGG | + | chr8.2:16113179-16113198 | MS.gene033042:intron | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.2:16112680-16112699 | MS.gene033042:intron | 35.0% |
| ! | GGATTAGTGAACAAAATGCT+TGG | + | chr8.2:16113700-16113719 | MS.gene033042:CDS | 35.0% |
| !! | CAGTCTTGGTAGTATCATTT+TGG | - | chr8.2:16113579-16113598 | None:intergenic | 35.0% |
| !! | TGTTGTCAATGCTGTTTCTT+TGG | + | chr8.2:16112601-16112620 | MS.gene033042:CDS | 35.0% |
| AAAACTTGGTATCCGGTCTA+AGG | + | chr8.2:16112354-16112373 | MS.gene033042:intron | 40.0% | |
| AACTAGTCACCTTGAATTGC+TGG | + | chr8.2:16113230-16113249 | MS.gene033042:intron | 40.0% | |
| AGAAATCCACCAGCAATTCA+AGG | - | chr8.2:16113242-16113261 | None:intergenic | 40.0% | |
| ATCAGGCAAAAGAAGCAGAT+AGG | + | chr8.2:16113410-16113429 | MS.gene033042:CDS | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.2:16112266-16112285 | MS.gene033042:CDS | 40.0% | |
| GATAGTCAACTTGGAACTGT+TGG | + | chr8.2:16113625-16113644 | MS.gene033042:CDS | 40.0% | |
| GCAATGCCTTATAATACACC+AGG | + | chr8.2:16113955-16113974 | MS.gene033042:CDS | 40.0% | |
| GCTAATGGTGATAGTCAACT+TGG | + | chr8.2:16113616-16113635 | MS.gene033042:CDS | 40.0% | |
| TACTGAAGATGGGTATTCTG+AGG | + | chr8.2:16113996-16114015 | MS.gene033042:CDS | 40.0% | |
| TATGTGCAGTTTCTGCAACA+GGG | + | chr8.2:16113773-16113792 | MS.gene033042:CDS | 40.0% | |
| TATGTTCCAGCACCTATGAT+TGG | - | chr8.2:16113742-16113761 | None:intergenic | 40.0% | |
| TCAGGCAAAAGAAGCAGATA+GGG | + | chr8.2:16113411-16113430 | MS.gene033042:CDS | 40.0% | |
| TCTGAGAAGGAACATACATG+TGG | + | chr8.2:16113192-16113211 | MS.gene033042:intron | 40.0% | |
| TGCATTCTTTCTGCACTTAG+AGG | - | chr8.2:16113154-16113173 | None:intergenic | 40.0% | |
| TTATGTGCAGTTTCTGCAAC+AGG | + | chr8.2:16113772-16113791 | MS.gene033042:CDS | 40.0% | |
| TTCACGTGTACGACATGTTT+GGG | + | chr8.2:16112736-16112755 | MS.gene033042:intron | 40.0% | |
| TTGCAATGCAATCGCAATCA+AGG | - | chr8.2:16113108-16113127 | None:intergenic | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.2:16112454-16112473 | MS.gene033042:intron | 40.0% | |
| TTTCACGTGTACGACATGTT+TGG | + | chr8.2:16112735-16112754 | MS.gene033042:intron | 40.0% | |
| ! | ACAGAAACGCCATTTGCTAA+TGG | + | chr8.2:16113601-16113620 | MS.gene033042:CDS | 40.0% |
| ! | ACCATTTTGGATACCGTTTG+TGG | + | chr8.2:16112789-16112808 | MS.gene033042:intron | 40.0% |
| ! | ATCGCAGAGGCGTAAAAATT+CGG | + | chr8.2:16113127-16113146 | MS.gene033042:intron | 40.0% |
| ! | CCATTTTGGATACCGTTTGT+GGG | + | chr8.2:16112790-16112809 | MS.gene033042:intron | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.2:16113838-16113857 | MS.gene033042:CDS | 40.0% |
| ! | TGAGAGCTTTGACACCAATT+TGG | - | chr8.2:16112257-16112276 | None:intergenic | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.2:16112616-16112635 | MS.gene033042:CDS | 40.0% |
| !! | ATGAAATGTGGTGCTGTTTC+TGG | + | chr8.2:16112569-16112588 | MS.gene033042:CDS | 40.0% |
| !! | GGTATTCTGAGGTTGCAATT+TGG | + | chr8.2:16114007-16114026 | MS.gene033042:CDS | 40.0% |
| !! | TGTGTAGCTGTTGATAGCAA+TGG | + | chr8.2:16113649-16113668 | MS.gene033042:CDS | 40.0% |
| !!! | TTTAGCTTTTGATGGAGCTG+AGG | + | chr8.2:16112658-16112677 | MS.gene033042:CDS | 40.0% |
| AAAAGAAGCAGATAGGGTCC+AGG | + | chr8.2:16113417-16113436 | MS.gene033042:CDS | 45.0% | |
| AAGAGATGTGGCTGCAATGA+TGG | + | chr8.2:16113828-16113847 | MS.gene033042:CDS | 45.0% | |
| AAGTTCAACGACGTCTAGAG+GGG | - | chr8.2:16112292-16112311 | None:intergenic | 45.0% | |
| ACAAGTTCAACGACGTCTAG+AGG | - | chr8.2:16112294-16112313 | None:intergenic | 45.0% | |
| ATTGGCGACACACCAATCAT+AGG | + | chr8.2:16113727-16113746 | MS.gene033042:CDS | 45.0% | |
| CAAGTTCAACGACGTCTAGA+GGG | - | chr8.2:16112293-16112312 | None:intergenic | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.2:16112522-16112541 | None:intergenic | 45.0% | |
| CCCACAAACGGTATCCAAAA+TGG | - | chr8.2:16112793-16112812 | None:intergenic | 45.0% | |
| CTAGCTTCAGCAACATCAAC+TGG | + | chr8.2:16113676-16113695 | MS.gene033042:CDS | 45.0% | |
| CTTCCAGTGGAAGTGAACAT+GGG | - | chr8.2:16112197-16112216 | None:intergenic | 45.0% | |
| GGTTCTGTTCTCACCAACAA+AGG | + | chr8.2:16112506-16112525 | MS.gene033042:CDS | 45.0% | |
| GTACATGAGCGCATACCAAA+GGG | + | chr8.2:16113892-16113911 | MS.gene033042:CDS | 45.0% | |
| TAGTCACCTTGAATTGCTGG+TGG | + | chr8.2:16113233-16113252 | MS.gene033042:intron | 45.0% | |
| TCAATCAAACGTGGCTCATG+TGG | + | chr8.2:16113082-16113101 | MS.gene033042:intron | 45.0% | |
| TCTCAACCCCCTGCAATATA+AGG | - | chr8.2:16113342-16113361 | None:intergenic | 45.0% | |
| TGGCGTTTCTGTTTCAGTCT+TGG | - | chr8.2:16113593-16113612 | None:intergenic | 45.0% | |
| TGTACATGAGCGCATACCAA+AGG | + | chr8.2:16113891-16113910 | MS.gene033042:CDS | 45.0% | |
| TGTTCTCACCAACAAAGGCA+CGG | + | chr8.2:16112511-16112530 | MS.gene033042:CDS | 45.0% | |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.2:16113985-16114004 | MS.gene033042:CDS | 45.0% |
| ! | ATAGGCGAAGCACTAATACG+CGG | + | chr8.2:16113796-16113815 | MS.gene033042:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.2:16112520-16112539 | MS.gene033042:CDS | 45.0% |
| ! | GAGCTTGTGCTACTGAAGAT+GGG | + | chr8.2:16113986-16114005 | MS.gene033042:CDS | 45.0% |
| ! | GAGCTTTGACACCAATTTGG+AGG | - | chr8.2:16112254-16112273 | None:intergenic | 45.0% |
| !! | GCACAAGCTCTAAACATTCC+TGG | - | chr8.2:16113976-16113995 | None:intergenic | 45.0% |
| !! | TGCTGTTTCTTTGGCTCGTT+TGG | + | chr8.2:16112610-16112629 | MS.gene033042:CDS | 45.0% |
| CACCAATTTGGAGGCAGTGA+CGG | - | chr8.2:16112245-16112264 | None:intergenic | 50.0% | |
| CGATTGCATTGCAATCGCAG+AGG | + | chr8.2:16113114-16113133 | MS.gene033042:intron | 50.0% | |
| GACACACCAATCATAGGTGC+TGG | + | chr8.2:16113733-16113752 | MS.gene033042:CDS | 50.0% | |
| GCAGTTTCTGCAACAGGGAT+AGG | + | chr8.2:16113778-16113797 | MS.gene033042:CDS | 50.0% | |
| GCTTCAGCAACATCAACTGG+TGG | + | chr8.2:16113679-16113698 | MS.gene033042:CDS | 50.0% | |
| GCTTCCAGTGGAAGTGAACA+TGG | - | chr8.2:16112198-16112217 | None:intergenic | 50.0% | |
| GGTGAGAACAGAACCTCTAC+CGG | - | chr8.2:16112501-16112520 | None:intergenic | 50.0% | |
| ! | TAGGCGAAGCACTAATACGC+GGG | + | chr8.2:16113797-16113816 | MS.gene033042:CDS | 50.0% |
| !! | ACCAAACCAAGAGTGCCCTT+TGG | - | chr8.2:16113910-16113929 | None:intergenic | 50.0% |
| !! | ACCAAAGGGCACTCTTGGTT+TGG | + | chr8.2:16113906-16113925 | MS.gene033042:CDS | 50.0% |
| AGCTTCTTCGCGTGGCTGAT+GGG | - | chr8.2:16112220-16112239 | None:intergenic | 55.0% | |
| CCACACTTCAATGCCGGTAG+AGG | + | chr8.2:16112485-16112504 | MS.gene033042:CDS | 55.0% | |
| CGGGACAGTAGCAAGAGATG+TGG | + | chr8.2:16113816-16113835 | MS.gene033042:CDS | 55.0% | |
| CGTCCCATGTTCACTTCCAC+TGG | + | chr8.2:16112191-16112210 | MS.gene033042:CDS | 55.0% | |
| CTCCGTCACTGCCTCCAAAT+TGG | + | chr8.2:16112240-16112259 | MS.gene033042:CDS | 55.0% | |
| TGGGCAGTAGCACTACATGG+CGG | + | chr8.2:16112162-16112181 | MS.gene033042:CDS | 55.0% | |
| TTGGTTGCTGTGTCTGCTGC+TGG | + | chr8.2:16113925-16113944 | MS.gene033042:CDS | 55.0% | |
| ! | CCTCTACCGGCATTGAAGTG+TGG | - | chr8.2:16112488-16112507 | None:intergenic | 55.0% |
| !! | CGCATACCAAAGGGCACTCT+TGG | + | chr8.2:16113901-16113920 | MS.gene033042:CDS | 55.0% |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.2:16112283-16112302 | None:intergenic | 60.0% | |
| GAGCTTCTTCGCGTGGCTGA+TGG | - | chr8.2:16112221-16112240 | None:intergenic | 60.0% | |
| GGCTGGGCAGTAGCACTACA+TGG | + | chr8.2:16112159-16112178 | MS.gene033042:CDS | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.2:16112228-16112247 | None:intergenic | 60.0% | |
| GTAGCACTACATGGCGGCGC+TGG | + | chr8.2:16112168-16112187 | MS.gene033042:CDS | 65.0% | |
| !! | CGTGGCTGATGGGCTTCCAG+TGG | - | chr8.2:16112210-16112229 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 16112156 | 16114050 | 16112156 | ID=MS.gene033042 |
| chr8.2 | mRNA | 16112156 | 16114050 | 16112156 | ID=MS.gene033042.t1;Parent=MS.gene033042 |
| chr8.2 | exon | 16112156 | 16112314 | 16112156 | ID=MS.gene033042.t1.exon1;Parent=MS.gene033042.t1 |
| chr8.2 | CDS | 16112156 | 16112314 | 16112156 | ID=cds.MS.gene033042.t1;Parent=MS.gene033042.t1 |
| chr8.2 | exon | 16112464 | 16112697 | 16112464 | ID=MS.gene033042.t1.exon2;Parent=MS.gene033042.t1 |
| chr8.2 | CDS | 16112464 | 16112697 | 16112464 | ID=cds.MS.gene033042.t1;Parent=MS.gene033042.t1 |
| chr8.2 | exon | 16113352 | 16113438 | 16113352 | ID=MS.gene033042.t1.exon3;Parent=MS.gene033042.t1 |
| chr8.2 | CDS | 16113352 | 16113438 | 16113352 | ID=cds.MS.gene033042.t1;Parent=MS.gene033042.t1 |
| chr8.2 | exon | 16113556 | 16114050 | 16113556 | ID=MS.gene033042.t1.exon4;Parent=MS.gene033042.t1 |
| chr8.2 | CDS | 16113556 | 16114050 | 16113556 | ID=cds.MS.gene033042.t1;Parent=MS.gene033042.t1 |
| Gene Sequence |
| Protein sequence |
