Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038824.t1 | XP_013458022.1 | 96 | 325 | 13 | 0 | 1 | 325 | 1 | 325 | 2.10E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038824.t1 | P50288 | 82.7 | 324 | 48 | 2 | 2 | 320 | 3 | 323 | 4.4e-151 | 535.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038824.t1 | A0A072USJ6 | 96.0 | 325 | 13 | 0 | 1 | 325 | 1 | 325 | 1.5e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044081 | MS.gene038824 | PPI |
| MS.gene24445 | MS.gene038824 | PPI |
| MS.gene038824 | MS.gene058167 | PPI |
| MS.gene015131 | MS.gene038824 | PPI |
| MS.gene38687 | MS.gene038824 | PPI |
| MS.gene34100 | MS.gene038824 | PPI |
| MS.gene038824 | MS.gene00469 | PPI |
| MS.gene038824 | MS.gene062544 | PPI |
| MS.gene32919 | MS.gene038824 | PPI |
| MS.gene63165 | MS.gene038824 | PPI |
| MS.gene038824 | MS.gene012937 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038824.t1 | MTR_4g109920 | 96.000 | 325 | 13 | 0 | 1 | 325 | 1 | 325 | 0.0 | 642 |
| MS.gene038824.t1 | MTR_4g109900 | 93.846 | 325 | 19 | 1 | 1 | 325 | 1 | 324 | 0.0 | 628 |
| MS.gene038824.t1 | MTR_3g102370 | 60.681 | 323 | 118 | 3 | 2 | 319 | 3 | 321 | 3.27e-134 | 384 |
| MS.gene038824.t1 | MTR_1g094030 | 60.494 | 324 | 117 | 3 | 1 | 319 | 2 | 319 | 2.88e-132 | 379 |
| MS.gene038824.t1 | MTR_1g018760 | 58.824 | 323 | 127 | 2 | 2 | 319 | 3 | 324 | 1.02e-131 | 378 |
| MS.gene038824.t1 | MTR_8g031580 | 30.877 | 285 | 151 | 8 | 5 | 254 | 23 | 296 | 2.29e-26 | 107 |
| MS.gene038824.t1 | MTR_8g031580 | 30.877 | 285 | 151 | 8 | 5 | 254 | 23 | 296 | 6.45e-26 | 107 |
| MS.gene038824.t1 | MTR_3g008180 | 29.921 | 254 | 149 | 10 | 67 | 295 | 77 | 326 | 3.12e-16 | 79.0 |
| MS.gene038824.t1 | MTR_3g008180 | 29.004 | 231 | 135 | 10 | 90 | 295 | 1 | 227 | 2.88e-12 | 66.2 |
| MS.gene038824.t1 | MTR_8g031580 | 27.805 | 205 | 105 | 7 | 85 | 254 | 1 | 197 | 2.08e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038824.t1 | AT5G08100 | 76.324 | 321 | 68 | 1 | 1 | 321 | 2 | 314 | 1.92e-178 | 496 |
| MS.gene038824.t1 | AT3G16150 | 59.443 | 323 | 125 | 2 | 2 | 319 | 3 | 324 | 1.82e-135 | 387 |
| MS.gene038824.t1 | AT5G08100 | 76.446 | 242 | 49 | 1 | 80 | 321 | 1 | 234 | 8.06e-131 | 372 |
| MS.gene038824.t1 | AT4G00590 | 26.113 | 337 | 200 | 9 | 5 | 297 | 15 | 346 | 3.52e-22 | 96.7 |
| MS.gene038824.t1 | AT4G00590 | 25.994 | 327 | 198 | 10 | 5 | 297 | 15 | 331 | 3.65e-18 | 84.7 |
| MS.gene038824.t1 | AT5G61540 | 29.183 | 257 | 150 | 10 | 67 | 295 | 80 | 332 | 8.58e-17 | 80.5 |
| MS.gene038824.t1 | AT5G61540 | 28.632 | 234 | 135 | 10 | 90 | 295 | 1 | 230 | 1.87e-13 | 69.7 |
| MS.gene038824.t1 | AT5G61540 | 28.632 | 234 | 135 | 10 | 90 | 295 | 1 | 230 | 1.87e-13 | 69.7 |
Find 83 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTTGGTAGGATCATTT+TGG | 0.204412 | 8.3:-14982537 | None:intergenic |
| AACATTCCTGTTGTATTATA+AGG | 0.204789 | 8.3:-14982922 | None:intergenic |
| AAATACGCCTCATATTTATT+TGG | 0.208099 | 8.3:+14981558 | MS.gene038824:CDS |
| CGTTCCGGTGGAAGTGAATA+TGG | 0.211132 | 8.3:-14981014 | None:intergenic |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.246722 | 8.3:+14981534 | MS.gene038824:CDS |
| TGCCGTTTCTTTGGCTCGTT+TGG | 0.294974 | 8.3:+14981528 | MS.gene038824:CDS |
| ATCAGGCAAAAGAAGCAAAT+AGG | 0.299059 | 8.3:+14982376 | MS.gene038824:CDS |
| TGAGAGCTTTGACACCAATT+TGG | 0.303094 | 8.3:-14981073 | None:intergenic |
| TGTTGTGAATGCCGTTTCTT+TGG | 0.303246 | 8.3:+14981519 | MS.gene038824:CDS |
| GGTATTCTGAGGTTGCAATT+TGG | 0.323714 | 8.3:+14982968 | MS.gene038824:CDS |
| CATTTCAACCGTGCCTTTGT+TGG | 0.327791 | 8.3:-14981437 | None:intergenic |
| TTGGTTGCTGTGTCTGCTGC+TGG | 0.335367 | 8.3:+14982886 | MS.gene038824:CDS |
| CTCCGTCACTGCCTCCAAAT+TGG | 0.364282 | 8.3:+14981059 | MS.gene038824:CDS |
| CAACAAAGGCACGGTTGAAA+TGG | 0.373150 | 8.3:+14981438 | MS.gene038824:CDS |
| GCAGTTTCTGCAACAGGAAA+AGG | 0.373244 | 8.3:+14982739 | MS.gene038824:CDS |
| TGAAATGGAAGCTTCTATAA+TGG | 0.384855 | 8.3:+14981453 | MS.gene038824:CDS |
| TCGCGTGGTTGACGGCGTTC+CGG | 0.399989 | 8.3:-14981029 | None:intergenic |
| ACCAAAGGGTACTGTTGGTT+TGG | 0.402505 | 8.3:+14982867 | MS.gene038824:CDS |
| GAGCTTCTTCGCGTGGTTGA+CGG | 0.403682 | 8.3:-14981037 | None:intergenic |
| ATTCAAAGGTCTTTCTCTAA+AGG | 0.406833 | 8.3:+14982813 | MS.gene038824:CDS |
| ATGAAATGTGGTGCTGTGTC+TGG | 0.412256 | 8.3:+14981487 | MS.gene038824:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.415599 | 8.3:+14982946 | MS.gene038824:CDS |
| AAATATTGAAAGGCTAAATC+AGG | 0.416374 | 8.3:+14982359 | MS.gene038824:CDS |
| TCAGGCAAAAGAAGCAAATA+GGG | 0.422197 | 8.3:+14982377 | MS.gene038824:CDS |
| CTAGCTTCTGCAACATCAAC+CGG | 0.423930 | 8.3:+14982637 | MS.gene038824:CDS |
| TGGTGTTTCTGTTTCACTCT+TGG | 0.426981 | 8.3:-14982551 | None:intergenic |
| AGAAACTGCACAAAATTCAT+TGG | 0.432061 | 8.3:-14982725 | None:intergenic |
| GTTTCTGTTTCACTCTTGGT+AGG | 0.442883 | 8.3:-14982547 | None:intergenic |
| AACAAGATGGTTGGTCGGAT+TGG | 0.453516 | 8.3:+14982670 | MS.gene038824:CDS |
| CAGTTTCTGCAACAGGAAAA+GGG | 0.454327 | 8.3:+14982740 | MS.gene038824:CDS |
| ATAGCTCTACACGGCGGCGC+CGG | 0.464394 | 8.3:+14980984 | MS.gene038824:CDS |
| GCAATGCCTTATAATACAAC+AGG | 0.464408 | 8.3:+14982916 | MS.gene038824:CDS |
| ATTGGCGACACGCCACTCAT+AGG | 0.473650 | 8.3:+14982688 | MS.gene038824:CDS |
| TCAAAAGCCAAATAAATATG+AGG | 0.487507 | 8.3:-14981565 | None:intergenic |
| ACAGAAACACCAGTTGCTAA+TGG | 0.490461 | 8.3:+14982562 | MS.gene038824:CDS |
| CCACACTTCAATGCTGGTAG+AGG | 0.496753 | 8.3:+14981403 | MS.gene038824:CDS |
| TGACTATCACCATTAGCAAC+TGG | 0.501796 | 8.3:-14982571 | None:intergenic |
| AAGAGATGTGGCTGCAATGA+TGG | 0.524648 | 8.3:+14982789 | MS.gene038824:CDS |
| GTTCCGGTGGAAGTGAATAT+GGG | 0.527909 | 8.3:-14981013 | None:intergenic |
| CACCAATTTGGAGGCAGTGA+CGG | 0.530368 | 8.3:-14981061 | None:intergenic |
| ACCAAACCAACAGTACCCTT+TGG | 0.530829 | 8.3:-14982868 | None:intergenic |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.3:+14981372 | MS.gene038824:intron |
| ATGGAAGCTTCTATAATGGA+TGG | 0.542192 | 8.3:+14981457 | MS.gene038824:CDS |
| CAAGTTCAACGACGTCTAGA+GGG | 0.545254 | 8.3:-14981109 | None:intergenic |
| GACACGCCACTCATAGGTGC+TGG | 0.548340 | 8.3:+14982694 | MS.gene038824:CDS |
| GAGCTTTGACACCAATTTGG+AGG | 0.548680 | 8.3:-14981070 | None:intergenic |
| TGTGTAGCTGTTGATAGTAA+TGG | 0.549412 | 8.3:+14982610 | MS.gene038824:CDS |
| CGTGGTTGACGGCGTTCCGG+TGG | 0.549993 | 8.3:-14981026 | None:intergenic |
| AACCAAACGAGCCAAAGAAA+CGG | 0.550876 | 8.3:-14981530 | None:intergenic |
| AATATTCCACACTTCAATGC+TGG | 0.552223 | 8.3:+14981397 | MS.gene038824:CDS |
| GAGCTTGTGCTACTGAAGAT+GGG | 0.553483 | 8.3:+14982947 | MS.gene038824:CDS |
| CATCTTGTTCACTAATCCAC+CGG | 0.557068 | 8.3:-14982656 | None:intergenic |
| AAAAGAAGCAAATAGGGTCC+AGG | 0.568354 | 8.3:+14982383 | MS.gene038824:CDS |
| GATAGTCAACTCGGAACTGT+TGG | 0.571797 | 8.3:+14982586 | MS.gene038824:CDS |
| GTACATGAGCGTACACCAAA+GGG | 0.575777 | 8.3:+14982853 | MS.gene038824:CDS |
| TTACTCCAGAAAATATTGAA+AGG | 0.577051 | 8.3:+14982349 | MS.gene038824:CDS |
| CGTACACCAAAGGGTACTGT+TGG | 0.579848 | 8.3:+14982862 | MS.gene038824:CDS |
| GGATTAGTGAACAAGATGGT+TGG | 0.581947 | 8.3:+14982661 | MS.gene038824:CDS |
| GACGTCTAGAGGGGCCATGT+TGG | 0.581967 | 8.3:-14981099 | None:intergenic |
| ACAAGTTCAACGACGTCTAG+AGG | 0.588579 | 8.3:-14981110 | None:intergenic |
| CATCCCATATTCACTTCCAC+CGG | 0.593610 | 8.3:+14981010 | MS.gene038824:CDS |
| TAGTGAACAAGATGGTTGGT+CGG | 0.597556 | 8.3:+14982665 | MS.gene038824:CDS |
| AAAGGGGAAGCAATAATTCG+CGG | 0.605090 | 8.3:+14982757 | MS.gene038824:CDS |
| AAGGGGAAGCAATAATTCGC+GGG | 0.607132 | 8.3:+14982758 | MS.gene038824:CDS |
| GGTTCTGTTCTTACCAACAA+AGG | 0.614531 | 8.3:+14981424 | MS.gene038824:CDS |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.615307 | 8.3:-14981044 | None:intergenic |
| TGTACATGAGCGTACACCAA+AGG | 0.621099 | 8.3:+14982852 | MS.gene038824:CDS |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.3:+14981085 | MS.gene038824:CDS |
| AGTTTCTGCAACAGGAAAAG+GGG | 0.641278 | 8.3:+14982741 | MS.gene038824:CDS |
| CGGTGGATTAGTGAACAAGA+TGG | 0.646608 | 8.3:+14982657 | MS.gene038824:CDS |
| TATGTTCCAGCACCTATGAG+TGG | 0.651676 | 8.3:-14982700 | None:intergenic |
| CGGGACAGTAGCAAGAGATG+TGG | 0.652039 | 8.3:+14982777 | MS.gene038824:CDS |
| GCTAATGGTGATAGTCAACT+CGG | 0.652387 | 8.3:+14982577 | MS.gene038824:CDS |
| AAGTGAATATGGGATGTCGC+CGG | 0.653946 | 8.3:-14981003 | None:intergenic |
| TGTTCTTACCAACAAAGGCA+CGG | 0.657835 | 8.3:+14981429 | MS.gene038824:CDS |
| AAGTTCAACGACGTCTAGAG+GGG | 0.663048 | 8.3:-14981108 | None:intergenic |
| GATGGAAATACTATGAAATG+TGG | 0.663282 | 8.3:+14981475 | MS.gene038824:CDS |
| GCTTCTGCAACATCAACCGG+TGG | 0.666858 | 8.3:+14982640 | MS.gene038824:CDS |
| CCTCTACCAGCATTGAAGTG+TGG | 0.667371 | 8.3:-14981403 | None:intergenic |
| TACTGAAGATGGGTATTCTG+AGG | 0.680447 | 8.3:+14982957 | MS.gene038824:CDS |
| GCTGCAATGATGGAATTCAA+AGG | 0.699018 | 8.3:+14982799 | MS.gene038824:CDS |
| GGTTGGGCAATAGCTCTACA+CGG | 0.703748 | 8.3:+14980975 | MS.gene038824:CDS |
| TGGGCAATAGCTCTACACGG+CGG | 0.798330 | 8.3:+14980978 | MS.gene038824:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAACTTATAGAAATAATTT+AGG | + | chr8.3:14981730-14981749 | MS.gene038824:intron | 15.0% |
| !! | TTATAATAATCATTGTTCAT+AGG | + | chr8.3:14981360-14981379 | MS.gene038824:intron | 15.0% |
| !! | TTTAATGTAATTATATGTGT+TGG | - | chr8.3:14981224-14981243 | None:intergenic | 15.0% |
| !!! | AAAGATATTTATTTTTCACA+AGG | - | chr8.3:14982168-14982187 | None:intergenic | 15.0% |
| !!! | CATTATATTAAAGTTTTGTT+TGG | - | chr8.3:14981941-14981960 | None:intergenic | 15.0% |
| !! | AATCAATCTATATATTTGTG+AGG | - | chr8.3:14982504-14982523 | None:intergenic | 20.0% |
| !! | ATACGTAAATTCAATATCAT+AGG | - | chr8.3:14982478-14982497 | None:intergenic | 20.0% |
| !! | TAAATAATGATCATAGTTTG+TGG | + | chr8.3:14982257-14982276 | MS.gene038824:intron | 20.0% |
| !!! | AGTTTAGAGCTTATATATTA+TGG | + | chr8.3:14981814-14981833 | MS.gene038824:intron | 20.0% |
| ! | AAATACGCCTCATATTTATT+TGG | + | chr8.3:14981558-14981577 | MS.gene038824:CDS | 25.0% |
| ! | AAATATTGAAAGGCTAAATC+AGG | + | chr8.3:14982359-14982378 | MS.gene038824:CDS | 25.0% |
| ! | AAATTCAATATCATAGGAGA+AGG | - | chr8.3:14982472-14982491 | None:intergenic | 25.0% |
| ! | AACATTCCTGTTGTATTATA+AGG | - | chr8.3:14982925-14982944 | None:intergenic | 25.0% |
| ! | AATTCAATATCATAGGAGAA+GGG | - | chr8.3:14982471-14982490 | None:intergenic | 25.0% |
| ! | AGAGAAGTTCATTATTCAAT+AGG | + | chr8.3:14982188-14982207 | MS.gene038824:intron | 25.0% |
| ! | ATACATTCTTTCTGCATTTA+AGG | - | chr8.3:14982116-14982135 | None:intergenic | 25.0% |
| ! | TACATTCTTTCTGCATTTAA+GGG | - | chr8.3:14982115-14982134 | None:intergenic | 25.0% |
| ! | TCAAAAGCCAAATAAATATG+AGG | - | chr8.3:14981568-14981587 | None:intergenic | 25.0% |
| ! | TTACTCCAGAAAATATTGAA+AGG | + | chr8.3:14982349-14982368 | MS.gene038824:CDS | 25.0% |
| ! | TTCTATGAAAGTTATATACC+TGG | - | chr8.3:14982404-14982423 | None:intergenic | 25.0% |
| !!! | CATATTTATTTGGCTTTTGA+TGG | + | chr8.3:14981568-14981587 | MS.gene038824:CDS | 25.0% |
| !!! | TATTTTCTGGAGTAATGAAA+TGG | - | chr8.3:14982344-14982363 | None:intergenic | 25.0% |
| !!! | TTTAGCCTTTCAATATTTTC+TGG | - | chr8.3:14982357-14982376 | None:intergenic | 25.0% |
| AAACAATCCTAAAGAGCTTA+TGG | - | chr8.3:14981786-14981805 | None:intergenic | 30.0% | |
| AATGTCTTCAATCACTATAC+TGG | + | chr8.3:14981974-14981993 | MS.gene038824:intron | 30.0% | |
| ACAAATTCACCAGTAATTCA+AGG | - | chr8.3:14982238-14982257 | None:intergenic | 30.0% | |
| AGAAACTGCACAAAATTCAT+TGG | - | chr8.3:14982728-14982747 | None:intergenic | 30.0% | |
| AGAATGCGATTAATCAAATG+TGG | + | chr8.3:14982029-14982048 | MS.gene038824:intron | 30.0% | |
| AGTATAGTGATTGAAGACAT+TGG | - | chr8.3:14981975-14981994 | None:intergenic | 30.0% | |
| ATTCAAAGGTCTTTCTCTAA+AGG | + | chr8.3:14982813-14982832 | MS.gene038824:CDS | 30.0% | |
| GAGAAGGGAAAAAATACATA+AGG | - | chr8.3:14982456-14982475 | None:intergenic | 30.0% | |
| GAGCTTATATATTATGGAGA+CGG | + | chr8.3:14981820-14981839 | MS.gene038824:intron | 30.0% | |
| GATGGAAATACTATGAAATG+TGG | + | chr8.3:14981475-14981494 | MS.gene038824:CDS | 30.0% | |
| TGAAATGGAAGCTTCTATAA+TGG | + | chr8.3:14981453-14981472 | MS.gene038824:CDS | 30.0% | |
| ! | GTTATTTCCATAAGCTCTTT+AGG | + | chr8.3:14981776-14981795 | MS.gene038824:intron | 30.0% |
| ! | TCTAAAATGATTACGACAGT+AGG | - | chr8.3:14981699-14981718 | None:intergenic | 30.0% |
| ! | TTCTGCATTTAAGACATGTT+TGG | + | chr8.3:14981651-14981670 | MS.gene038824:intron | 30.0% |
| !! | CATGTTCATAAGTTGTTTTC+AGG | + | chr8.3:14981754-14981773 | MS.gene038824:intron | 30.0% |
| AACTAGTCACCTTGAATTAC+TGG | + | chr8.3:14982226-14982245 | MS.gene038824:intron | 35.0% | |
| AATATTCCACACTTCAATGC+TGG | + | chr8.3:14981397-14981416 | MS.gene038824:CDS | 35.0% | |
| ATCAGGCAAAAGAAGCAAAT+AGG | + | chr8.3:14982376-14982395 | MS.gene038824:CDS | 35.0% | |
| GCAATGCCTTATAATACAAC+AGG | + | chr8.3:14982916-14982935 | MS.gene038824:CDS | 35.0% | |
| TCAGGCAAAAGAAGCAAATA+GGG | + | chr8.3:14982377-14982396 | MS.gene038824:CDS | 35.0% | |
| TTAATCAAATGTGGCTCATG+TGG | + | chr8.3:14982038-14982057 | MS.gene038824:intron | 35.0% | |
| ! | ATGGAAGCTTCTATAATGGA+TGG | + | chr8.3:14981457-14981476 | MS.gene038824:CDS | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.3:14981598-14981617 | MS.gene038824:intron | 35.0% |
| ! | TTGGTAGGATCATTTTGGAT+TGG | - | chr8.3:14982535-14982554 | None:intergenic | 35.0% |
| !! | TGTGTAGCTGTTGATAGTAA+TGG | + | chr8.3:14982610-14982629 | MS.gene038824:CDS | 35.0% |
| !!! | AGGATCATTTTGGATTGGTT+GGG | - | chr8.3:14982530-14982549 | None:intergenic | 35.0% |
| !!! | ATCATGTAGCCTTATTTTGC+AGG | + | chr8.3:14982296-14982315 | MS.gene038824:intron | 35.0% |
| !!! | TAGGATCATTTTGGATTGGT+TGG | - | chr8.3:14982531-14982550 | None:intergenic | 35.0% |
| !!! | TCATGTAGCCTTATTTTGCA+GGG | + | chr8.3:14982297-14982316 | MS.gene038824:intron | 35.0% |
| AAAAGAAGCAAATAGGGTCC+AGG | + | chr8.3:14982383-14982402 | MS.gene038824:CDS | 40.0% | |
| AAAGGGGAAGCAATAATTCG+CGG | + | chr8.3:14982757-14982776 | MS.gene038824:CDS | 40.0% | |
| AACCAAACGAGCCAAAGAAA+CGG | - | chr8.3:14981533-14981552 | None:intergenic | 40.0% | |
| ACAGAAACACCAGTTGCTAA+TGG | + | chr8.3:14982562-14982581 | MS.gene038824:CDS | 40.0% | |
| AGTTTCTGCAACAGGAAAAG+GGG | + | chr8.3:14982741-14982760 | MS.gene038824:CDS | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.3:14981085-14981104 | MS.gene038824:CDS | 40.0% | |
| CAGAAGAGAGCTATGAAACA+TGG | - | chr8.3:14981318-14981337 | None:intergenic | 40.0% | |
| CAGTTTCTGCAACAGGAAAA+GGG | + | chr8.3:14982740-14982759 | MS.gene038824:CDS | 40.0% | |
| CATCTTGTTCACTAATCCAC+CGG | - | chr8.3:14982659-14982678 | None:intergenic | 40.0% | |
| CTGTGATGTGATCGCAATTA+AGG | - | chr8.3:14982064-14982083 | None:intergenic | 40.0% | |
| CTTTCTGCATTTAAGGGTCA+GGG | - | chr8.3:14982109-14982128 | None:intergenic | 40.0% | |
| GCTAATGGTGATAGTCAACT+CGG | + | chr8.3:14982577-14982596 | MS.gene038824:CDS | 40.0% | |
| GGTTCTGTTCTTACCAACAA+AGG | + | chr8.3:14981424-14981443 | MS.gene038824:CDS | 40.0% | |
| GTTTCTGTTTCACTCTTGGT+AGG | - | chr8.3:14982550-14982569 | None:intergenic | 40.0% | |
| TACTGAAGATGGGTATTCTG+AGG | + | chr8.3:14982957-14982976 | MS.gene038824:CDS | 40.0% | |
| TAGTGAACAAGATGGTTGGT+CGG | + | chr8.3:14982665-14982684 | MS.gene038824:CDS | 40.0% | |
| TCTTTCTGCATTTAAGGGTC+AGG | - | chr8.3:14982110-14982129 | None:intergenic | 40.0% | |
| TGACTATCACCATTAGCAAC+TGG | - | chr8.3:14982574-14982593 | None:intergenic | 40.0% | |
| TGTTCTTACCAACAAAGGCA+CGG | + | chr8.3:14981429-14981448 | MS.gene038824:CDS | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.3:14981372-14981391 | MS.gene038824:intron | 40.0% | |
| ! | CACTCTTGGTAGGATCATTT+TGG | - | chr8.3:14982540-14982559 | None:intergenic | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.3:14982799-14982818 | MS.gene038824:CDS | 40.0% |
| ! | GGATTAGTGAACAAGATGGT+TGG | + | chr8.3:14982661-14982680 | MS.gene038824:CDS | 40.0% |
| ! | TGAGAGCTTTGACACCAATT+TGG | - | chr8.3:14981076-14981095 | None:intergenic | 40.0% |
| ! | TGGTGTTTCTGTTTCACTCT+TGG | - | chr8.3:14982554-14982573 | None:intergenic | 40.0% |
| ! | TGTTGTGAATGCCGTTTCTT+TGG | + | chr8.3:14981519-14981538 | MS.gene038824:CDS | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.3:14981534-14981553 | MS.gene038824:CDS | 40.0% |
| ! | TTTTGTGCAGTTTCTGCAAC+AGG | + | chr8.3:14982733-14982752 | MS.gene038824:CDS | 40.0% |
| !! | GGTATTCTGAGGTTGCAATT+TGG | + | chr8.3:14982968-14982987 | MS.gene038824:CDS | 40.0% |
| !! | TATATGTGTTGGTGTCGTGT+CGG | - | chr8.3:14981213-14981232 | None:intergenic | 40.0% |
| !!! | ATGTAGCCTTATTTTGCAGG+GGG | + | chr8.3:14982299-14982318 | MS.gene038824:intron | 40.0% |
| !!! | CATGTAGCCTTATTTTGCAG+GGG | + | chr8.3:14982298-14982317 | MS.gene038824:intron | 40.0% |
| AAGAGATGTGGCTGCAATGA+TGG | + | chr8.3:14982789-14982808 | MS.gene038824:CDS | 45.0% | |
| AAGGGGAAGCAATAATTCGC+GGG | + | chr8.3:14982758-14982777 | MS.gene038824:CDS | 45.0% | |
| AAGTGAATATGGGATGTCGC+CGG | - | chr8.3:14981006-14981025 | None:intergenic | 45.0% | |
| AAGTTCAACGACGTCTAGAG+GGG | - | chr8.3:14981111-14981130 | None:intergenic | 45.0% | |
| ACAAGTTCAACGACGTCTAG+AGG | - | chr8.3:14981113-14981132 | None:intergenic | 45.0% | |
| ACCAAACCAACAGTACCCTT+TGG | - | chr8.3:14982871-14982890 | None:intergenic | 45.0% | |
| CAAGTTCAACGACGTCTAGA+GGG | - | chr8.3:14981112-14981131 | None:intergenic | 45.0% | |
| CATCCCATATTCACTTCCAC+CGG | + | chr8.3:14981010-14981029 | MS.gene038824:CDS | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.3:14981440-14981459 | None:intergenic | 45.0% | |
| CTAGCTTCTGCAACATCAAC+CGG | + | chr8.3:14982637-14982656 | MS.gene038824:CDS | 45.0% | |
| GATAGTCAACTCGGAACTGT+TGG | + | chr8.3:14982586-14982605 | MS.gene038824:CDS | 45.0% | |
| GCACAAACACTCCACAGTTT+AGG | + | chr8.3:14981172-14981191 | MS.gene038824:intron | 45.0% | |
| GCAGTTTCTGCAACAGGAAA+AGG | + | chr8.3:14982739-14982758 | MS.gene038824:CDS | 45.0% | |
| GTACATGAGCGTACACCAAA+GGG | + | chr8.3:14982853-14982872 | MS.gene038824:CDS | 45.0% | |
| GTTCCGGTGGAAGTGAATAT+GGG | - | chr8.3:14981016-14981035 | None:intergenic | 45.0% | |
| TATGTTCCAGCACCTATGAG+TGG | - | chr8.3:14982703-14982722 | None:intergenic | 45.0% | |
| TCTCAACCCCCTGCAAAATA+AGG | - | chr8.3:14982308-14982327 | None:intergenic | 45.0% | |
| TGTACATGAGCGTACACCAA+AGG | + | chr8.3:14982852-14982871 | MS.gene038824:CDS | 45.0% | |
| ! | AACAAGATGGTTGGTCGGAT+TGG | + | chr8.3:14982670-14982689 | MS.gene038824:CDS | 45.0% |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.3:14982946-14982965 | MS.gene038824:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.3:14981438-14981457 | MS.gene038824:CDS | 45.0% |
| ! | GAGCTTGTGCTACTGAAGAT+GGG | + | chr8.3:14982947-14982966 | MS.gene038824:CDS | 45.0% |
| ! | GAGCTTTGACACCAATTTGG+AGG | - | chr8.3:14981073-14981092 | None:intergenic | 45.0% |
| !! | ACCAAAGGGTACTGTTGGTT+TGG | + | chr8.3:14982867-14982886 | MS.gene038824:CDS | 45.0% |
| !! | ATGAAATGTGGTGCTGTGTC+TGG | + | chr8.3:14981487-14981506 | MS.gene038824:CDS | 45.0% |
| !! | CGGTGGATTAGTGAACAAGA+TGG | + | chr8.3:14982657-14982676 | MS.gene038824:CDS | 45.0% |
| !!! | TTTGGCTTTTGATGGTGCTG+AGG | + | chr8.3:14981576-14981595 | MS.gene038824:CDS | 45.0% |
| CACCAATTTGGAGGCAGTGA+CGG | - | chr8.3:14981064-14981083 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | + | chr8.3:14981403-14981422 | MS.gene038824:CDS | 50.0% | |
| CGTTCCGGTGGAAGTGAATA+TGG | - | chr8.3:14981017-14981036 | None:intergenic | 50.0% | |
| GTCACTGTTCATGTCGTGTC+TGG | + | chr8.3:14981281-14981300 | MS.gene038824:intron | 50.0% | |
| TCCACAGTTTAGGCTTGTCC+CGG | + | chr8.3:14981182-14981201 | MS.gene038824:intron | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | - | chr8.3:14981406-14981425 | None:intergenic | 50.0% |
| ! | GGTTGGGCAATAGCTCTACA+CGG | + | chr8.3:14980975-14980994 | MS.gene038824:CDS | 50.0% |
| ! | TGCCGTTTCTTTGGCTCGTT+TGG | + | chr8.3:14981528-14981547 | MS.gene038824:CDS | 50.0% |
| !! | CGTACACCAAAGGGTACTGT+TGG | + | chr8.3:14982862-14982881 | MS.gene038824:CDS | 50.0% |
| ACCGGGACAAGCCTAAACTG+TGG | - | chr8.3:14981186-14981205 | None:intergenic | 55.0% | |
| ATTGGCGACACGCCACTCAT+AGG | + | chr8.3:14982688-14982707 | MS.gene038824:CDS | 55.0% | |
| CGGGACAGTAGCAAGAGATG+TGG | + | chr8.3:14982777-14982796 | MS.gene038824:CDS | 55.0% | |
| CTCCGTCACTGCCTCCAAAT+TGG | + | chr8.3:14981059-14981078 | MS.gene038824:CDS | 55.0% | |
| GAGCTTCTTCGCGTGGTTGA+CGG | - | chr8.3:14981040-14981059 | None:intergenic | 55.0% | |
| GCTTCTGCAACATCAACCGG+TGG | + | chr8.3:14982640-14982659 | MS.gene038824:CDS | 55.0% | |
| TTGGTTGCTGTGTCTGCTGC+TGG | + | chr8.3:14982886-14982905 | MS.gene038824:CDS | 55.0% | |
| ! | TGGGCAATAGCTCTACACGG+CGG | + | chr8.3:14980978-14980997 | MS.gene038824:CDS | 55.0% |
| GACACGCCACTCATAGGTGC+TGG | + | chr8.3:14982694-14982713 | MS.gene038824:CDS | 60.0% | |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.3:14981102-14981121 | None:intergenic | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.3:14981047-14981066 | None:intergenic | 60.0% | |
| !! | TGGTGTCGTGTCGGTGTCAC+CGG | - | chr8.3:14981204-14981223 | None:intergenic | 60.0% |
| TCGCGTGGTTGACGGCGTTC+CGG | - | chr8.3:14981032-14981051 | None:intergenic | 65.0% | |
| ! | ATAGCTCTACACGGCGGCGC+CGG | + | chr8.3:14980984-14981003 | MS.gene038824:CDS | 65.0% |
| !! | GGTGTCGTGTCGGTGTCACC+GGG | - | chr8.3:14981203-14981222 | None:intergenic | 65.0% |
| CGTGGTTGACGGCGTTCCGG+TGG | - | chr8.3:14981029-14981048 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 14980972 | 14983011 | 14980972 | ID=MS.gene038824 |
| chr8.3 | mRNA | 14980972 | 14983011 | 14980972 | ID=MS.gene038824.t1;Parent=MS.gene038824 |
| chr8.3 | exon | 14980972 | 14981133 | 14980972 | ID=MS.gene038824.t1.exon1;Parent=MS.gene038824.t1 |
| chr8.3 | CDS | 14980972 | 14981133 | 14980972 | ID=cds.MS.gene038824.t1;Parent=MS.gene038824.t1 |
| chr8.3 | exon | 14981382 | 14981615 | 14981382 | ID=MS.gene038824.t1.exon2;Parent=MS.gene038824.t1 |
| chr8.3 | CDS | 14981382 | 14981615 | 14981382 | ID=cds.MS.gene038824.t1;Parent=MS.gene038824.t1 |
| chr8.3 | exon | 14982318 | 14982404 | 14982318 | ID=MS.gene038824.t1.exon3;Parent=MS.gene038824.t1 |
| chr8.3 | CDS | 14982318 | 14982404 | 14982318 | ID=cds.MS.gene038824.t1;Parent=MS.gene038824.t1 |
| chr8.3 | exon | 14982517 | 14983011 | 14982517 | ID=MS.gene038824.t1.exon4;Parent=MS.gene038824.t1 |
| chr8.3 | CDS | 14982517 | 14983011 | 14982517 | ID=cds.MS.gene038824.t1;Parent=MS.gene038824.t1 |
| Gene Sequence |
| Protein sequence |
