Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044475.t1 | XP_013458020.1 | 97.5 | 324 | 8 | 0 | 1 | 324 | 1 | 324 | 2.30E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044475.t1 | P50288 | 78.8 | 326 | 60 | 3 | 2 | 321 | 3 | 325 | 2.8e-142 | 506.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044475.t1 | A0A072URR5 | 97.5 | 324 | 8 | 0 | 1 | 324 | 1 | 324 | 1.6e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044475 | MS.gene015131 | PPI |
| MS.gene044081 | MS.gene044475 | PPI |
| MS.gene044475 | MS.gene058167 | PPI |
| MS.gene38687 | MS.gene044475 | PPI |
| MS.gene044475 | MS.gene34100 | PPI |
| MS.gene044475 | MS.gene24445 | PPI |
| MS.gene044475 | MS.gene00469 | PPI |
| MS.gene044475 | MS.gene062544 | PPI |
| MS.gene044475 | MS.gene012937 | PPI |
| MS.gene32919 | MS.gene044475 | PPI |
| MS.gene63165 | MS.gene044475 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044475.t1 | MTR_4g109900 | 97.531 | 324 | 8 | 0 | 1 | 324 | 1 | 324 | 0.0 | 652 |
| MS.gene044475.t1 | MTR_4g109920 | 92.615 | 325 | 23 | 1 | 1 | 324 | 1 | 325 | 0.0 | 615 |
| MS.gene044475.t1 | MTR_1g018760 | 58.385 | 322 | 129 | 1 | 2 | 318 | 3 | 324 | 1.50e-131 | 377 |
| MS.gene044475.t1 | MTR_3g102370 | 58.696 | 322 | 125 | 2 | 2 | 318 | 3 | 321 | 1.79e-129 | 372 |
| MS.gene044475.t1 | MTR_1g094030 | 58.824 | 323 | 123 | 2 | 1 | 318 | 2 | 319 | 3.30e-128 | 369 |
| MS.gene044475.t1 | MTR_8g031580 | 30.435 | 276 | 163 | 6 | 5 | 253 | 23 | 296 | 5.84e-26 | 106 |
| MS.gene044475.t1 | MTR_8g031580 | 30.435 | 276 | 163 | 6 | 5 | 253 | 23 | 296 | 1.39e-25 | 105 |
| MS.gene044475.t1 | MTR_3g008180 | 29.134 | 254 | 151 | 9 | 66 | 294 | 77 | 326 | 1.38e-16 | 79.7 |
| MS.gene044475.t1 | MTR_3g008180 | 28.139 | 231 | 137 | 9 | 89 | 294 | 1 | 227 | 1.84e-12 | 66.6 |
| MS.gene044475.t1 | MTR_8g031580 | 26.904 | 197 | 117 | 5 | 84 | 253 | 1 | 197 | 2.16e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044475.t1 | AT5G08100 | 72.897 | 321 | 78 | 2 | 1 | 320 | 2 | 314 | 9.24e-169 | 471 |
| MS.gene044475.t1 | AT3G16150 | 57.453 | 322 | 132 | 1 | 2 | 318 | 3 | 324 | 7.33e-132 | 379 |
| MS.gene044475.t1 | AT5G08100 | 73.554 | 242 | 56 | 1 | 79 | 320 | 1 | 234 | 2.67e-126 | 361 |
| MS.gene044475.t1 | AT4G00590 | 26.331 | 338 | 205 | 8 | 5 | 300 | 15 | 350 | 2.82e-21 | 94.0 |
| MS.gene044475.t1 | AT4G00590 | 26.220 | 328 | 203 | 9 | 5 | 300 | 15 | 335 | 1.78e-17 | 82.8 |
Find 77 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAATGTGGTGCTGTTTC+TGG | 0.170440 | 8.1:+15789898 | MS.gene044475:CDS |
| CAGTCTTGGTAGTATCATTT+TGG | 0.221895 | 8.1:-15790921 | None:intergenic |
| TGTTGTCAATGCTGTTTCTT+TGG | 0.230934 | 8.1:+15789930 | MS.gene044475:CDS |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.251608 | 8.1:+15789945 | MS.gene044475:CDS |
| TGCTGTTTCTTTGGCTCGTT+TGG | 0.258446 | 8.1:+15789939 | MS.gene044475:CDS |
| TGAAATGGAAGCTTCTATTA+TGG | 0.283828 | 8.1:+15789864 | MS.gene044475:CDS |
| AACATTCCTGGTGTATTATA+AGG | 0.283990 | 8.1:-15791306 | None:intergenic |
| CATTTCAACCGTGCCTTTGT+TGG | 0.295712 | 8.1:-15789848 | None:intergenic |
| TGAGAGCTTTGACACCAATT+TGG | 0.303094 | 8.1:-15789583 | None:intergenic |
| AACAAAATGCTTGGTCGAAT+TGG | 0.323432 | 8.1:+15791054 | MS.gene044475:CDS |
| TTGGTTGCTGTGTCTGCTGC+TGG | 0.335367 | 8.1:+15791270 | MS.gene044475:CDS |
| CTCCGTCACTGCCTCCAAAT+TGG | 0.364282 | 8.1:+15789569 | MS.gene044475:CDS |
| CAACAAAGGCACGGTTGAAA+TGG | 0.368413 | 8.1:+15789849 | MS.gene044475:CDS |
| TTATGTGCAGTTTCTGCAAC+AGG | 0.369596 | 8.1:+15791117 | MS.gene044475:CDS |
| GAGCTTCTTCGCGTGGCTGA+CGG | 0.371844 | 8.1:-15789547 | None:intergenic |
| AAATATTGAAAGACTAAATC+AGG | 0.382200 | 8.1:+15790738 | MS.gene044475:CDS |
| CGCATACCAAAGGGCACTCT+TGG | 0.383825 | 8.1:+15791246 | MS.gene044475:CDS |
| AGCTTCTTCGCGTGGCTGAC+GGG | 0.383916 | 8.1:-15789546 | None:intergenic |
| ACCAAAGGGCACTCTTGGTT+TGG | 0.387480 | 8.1:+15791251 | MS.gene044475:CDS |
| GGTATTCTGAGGTTGCAATT+TGG | 0.392513 | 8.1:+15791352 | MS.gene044475:CDS |
| ATTCAAAGGTCTTTCTCTAA+AGG | 0.406833 | 8.1:+15791197 | MS.gene044475:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.415599 | 8.1:+15791330 | MS.gene044475:CDS |
| CTAGCTTCAGCAACATCAAC+TGG | 0.443431 | 8.1:+15791021 | MS.gene044475:CDS |
| AGAAACTGCACATAATTCAT+TGG | 0.443619 | 8.1:-15791109 | None:intergenic |
| ATCAGGCAAAAGAAGCAGAT+AGG | 0.446556 | 8.1:+15790755 | MS.gene044475:CDS |
| GCACAAGCTCTAAACATTCC+TGG | 0.447190 | 8.1:-15791318 | None:intergenic |
| GTAGCACTACATGGCGGCGC+TGG | 0.455409 | 8.1:+15789497 | MS.gene044475:CDS |
| ACAGAAACGCCATTTGCTAA+TGG | 0.455853 | 8.1:+15790946 | MS.gene044475:CDS |
| ATTGGCGACACACCAATCAT+AGG | 0.465489 | 8.1:+15791072 | MS.gene044475:CDS |
| TGGCGTTTCTGTTTCAGTCT+TGG | 0.468537 | 8.1:-15790935 | None:intergenic |
| CGTCCCATGTTCACTTCCAC+TGG | 0.473587 | 8.1:+15789520 | MS.gene044475:CDS |
| TCAAAAGCTAAATAAATATG+AGG | 0.487507 | 8.1:-15789976 | None:intergenic |
| GCTAATGGTGATAGTCAACT+TGG | 0.494325 | 8.1:+15790961 | MS.gene044475:CDS |
| CCACACTTCAATGCTGGTAG+AGG | 0.496753 | 8.1:+15789814 | MS.gene044475:CDS |
| ATGGAAGCTTCTATTATGGA+TGG | 0.505013 | 8.1:+15789868 | MS.gene044475:CDS |
| TATGTTCCAGCACCTATGAT+TGG | 0.508692 | 8.1:-15791084 | None:intergenic |
| GCTTCCAGTGGAAGTGAACA+TGG | 0.510046 | 8.1:-15789524 | None:intergenic |
| GCAGTTTCTGCAACAGGGAT+AGG | 0.517760 | 8.1:+15791123 | MS.gene044475:CDS |
| ACCAAACCAAGAGTGCCCTT+TGG | 0.521596 | 8.1:-15791252 | None:intergenic |
| AAGAGATGTGGCTGCAATGA+TGG | 0.524648 | 8.1:+15791173 | MS.gene044475:CDS |
| CACCAATTTGGAGGCAGTGA+CGG | 0.530368 | 8.1:-15789571 | None:intergenic |
| TGACTATCACCATTAGCAAA+TGG | 0.534535 | 8.1:-15790955 | None:intergenic |
| CGTGGCTGACGGGCTTCCAG+TGG | 0.536076 | 8.1:-15789536 | None:intergenic |
| GGCTGGGCAGTAGCACTACA+TGG | 0.540514 | 8.1:+15789488 | MS.gene044475:CDS |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.1:+15789783 | MS.gene044475:intron |
| CAAGTTCAACGACGTCTAGA+GGG | 0.545254 | 8.1:-15789619 | None:intergenic |
| GAGCTTTGACACCAATTTGG+AGG | 0.548680 | 8.1:-15789580 | None:intergenic |
| AATATTCCACACTTCAATGC+TGG | 0.552223 | 8.1:+15789808 | MS.gene044475:CDS |
| GAGCTTGTGCTACTGAAGAT+GGG | 0.553483 | 8.1:+15791331 | MS.gene044475:CDS |
| TCAGGCAAAAGAAGCAGATA+GGG | 0.554190 | 8.1:+15790756 | MS.gene044475:CDS |
| GTACATGAGCGCATACCAAA+GGG | 0.559392 | 8.1:+15791237 | MS.gene044475:CDS |
| AAAAGAAGCAGATAGGGTCC+AGG | 0.559600 | 8.1:+15790762 | MS.gene044475:CDS |
| GACACACCAATCATAGGTGC+TGG | 0.568481 | 8.1:+15791078 | MS.gene044475:CDS |
| GATAGTCAACTTGGAACTGT+TGG | 0.569724 | 8.1:+15790970 | MS.gene044475:CDS |
| GACGTCTAGAGGGGCCATGT+TGG | 0.581967 | 8.1:-15789609 | None:intergenic |
| TGGAAGCTTCTATTATGGAT+GGG | 0.585002 | 8.1:+15789869 | MS.gene044475:CDS |
| ACAAGTTCAACGACGTCTAG+AGG | 0.588579 | 8.1:-15789620 | None:intergenic |
| TGTGTAGCTGTTGATAGCAA+TGG | 0.600794 | 8.1:+15790994 | MS.gene044475:CDS |
| TGTACATGAGCGCATACCAA+AGG | 0.603493 | 8.1:+15791236 | MS.gene044475:CDS |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.620892 | 8.1:-15789554 | None:intergenic |
| GGTTCTGTTCTCACCAACAA+AGG | 0.624233 | 8.1:+15789835 | MS.gene044475:CDS |
| GCTTCAGCAACATCAACTGG+TGG | 0.625484 | 8.1:+15791024 | MS.gene044475:CDS |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.1:+15789595 | MS.gene044475:CDS |
| GGATTAGTGAACAAAATGCT+TGG | 0.633330 | 8.1:+15791045 | MS.gene044475:CDS |
| TAGGCGAAGCACTAATACGC+GGG | 0.640412 | 8.1:+15791142 | MS.gene044475:CDS |
| TGTTCTCACCAACAAAGGCA+CGG | 0.646882 | 8.1:+15789840 | MS.gene044475:CDS |
| GCAATGCCTTATAATACACC+AGG | 0.652456 | 8.1:+15791300 | MS.gene044475:CDS |
| CGGGACAGTAGCAAGAGATG+TGG | 0.659071 | 8.1:+15791161 | MS.gene044475:CDS |
| AAGTTCAACGACGTCTAGAG+GGG | 0.663048 | 8.1:-15789618 | None:intergenic |
| CCTCTACCAGCATTGAAGTG+TGG | 0.667371 | 8.1:-15789814 | None:intergenic |
| TATGTGCAGTTTCTGCAACA+GGG | 0.671046 | 8.1:+15791118 | MS.gene044475:CDS |
| GATGGGAATACTATGAAATG+TGG | 0.679160 | 8.1:+15789886 | MS.gene044475:CDS |
| TACTGAAGATGGGTATTCTG+AGG | 0.680447 | 8.1:+15791341 | MS.gene044475:CDS |
| TGGGCAGTAGCACTACATGG+CGG | 0.691397 | 8.1:+15789491 | MS.gene044475:CDS |
| CTTCCAGTGGAAGTGAACAT+GGG | 0.696208 | 8.1:-15789523 | None:intergenic |
| GCTGCAATGATGGAATTCAA+AGG | 0.699018 | 8.1:+15791183 | MS.gene044475:CDS |
| ATAGGCGAAGCACTAATACG+CGG | 0.787645 | 8.1:+15791141 | MS.gene044475:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATATTAAAATTTTGTT+TGG | - | chr8.1:15790319-15790338 | None:intergenic | 10.0% |
| !! | TATAAGATATTCAATATGAT+AGG | - | chr8.1:15790863-15790882 | None:intergenic | 15.0% |
| !!! | TTTATCACTTTAAAAAAACT+TGG | + | chr8.1:15789669-15789688 | MS.gene044475:intron | 15.0% |
| !! | AAAACTTAAGAAAATGAGAT+TGG | - | chr8.1:15790047-15790066 | None:intergenic | 20.0% |
| !! | AAATATTGAAAGACTAAATC+AGG | + | chr8.1:15790738-15790757 | MS.gene044475:CDS | 20.0% |
| !! | TCAAAAGCTAAATAAATATG+AGG | - | chr8.1:15789979-15789998 | None:intergenic | 20.0% |
| !! | TCATAATAATCATTGTTCAT+AGG | + | chr8.1:15789771-15789790 | MS.gene044475:intron | 20.0% |
| !!! | ATTCATTAACATTACCATTT+TGG | + | chr8.1:15790105-15790124 | MS.gene044475:intron | 20.0% |
| !!! | CATATTTATTTAGCTTTTGA+TGG | + | chr8.1:15789979-15789998 | MS.gene044475:CDS | 20.0% |
| !!! | TTTAGTCTTTCAATATTTTC+TGG | - | chr8.1:15790736-15790755 | None:intergenic | 20.0% |
| ! | ATATTCAATATGATAGGAGA+AGG | - | chr8.1:15790857-15790876 | None:intergenic | 25.0% |
| ! | ATCATATATCCTTATATTGC+AGG | + | chr8.1:15790675-15790694 | MS.gene044475:intron | 25.0% |
| ! | CAGAAGAAAATTCAAATAGA+CGG | - | chr8.1:15789736-15789755 | None:intergenic | 25.0% |
| ! | TAAATAATGATCGTAGTTTG+TGG | + | chr8.1:15790606-15790625 | MS.gene044475:intron | 25.0% |
| ! | TACTATGAAAGTTATATACC+TGG | - | chr8.1:15790783-15790802 | None:intergenic | 25.0% |
| ! | TATTCAATATGATAGGAGAA+GGG | - | chr8.1:15790856-15790875 | None:intergenic | 25.0% |
| ! | TCATATATCCTTATATTGCA+GGG | + | chr8.1:15790676-15790695 | MS.gene044475:intron | 25.0% |
| !! | CTTTAAAAAAACTTGGTATC+CGG | + | chr8.1:15789676-15789695 | MS.gene044475:intron | 25.0% |
| !!! | TATTTTCTGGAGTAATGAAA+TGG | - | chr8.1:15790723-15790742 | None:intergenic | 25.0% |
| AACATTCCTGGTGTATTATA+AGG | - | chr8.1:15791309-15791328 | None:intergenic | 30.0% | |
| ACTATCGTGATTGAAAACAT+TGG | - | chr8.1:15790361-15790380 | None:intergenic | 30.0% | |
| AGAAAATTCAAATAGACGGT+AGG | - | chr8.1:15789732-15789751 | None:intergenic | 30.0% | |
| AGAAACTGCACATAATTCAT+TGG | - | chr8.1:15791112-15791131 | None:intergenic | 30.0% | |
| ATATATCCTTATATTGCAGG+GGG | + | chr8.1:15790678-15790697 | MS.gene044475:intron | 30.0% | |
| ATTCAAAGGTCTTTCTCTAA+AGG | + | chr8.1:15791197-15791216 | MS.gene044475:CDS | 30.0% | |
| CATATATCCTTATATTGCAG+GGG | + | chr8.1:15790677-15790696 | MS.gene044475:intron | 30.0% | |
| GAATGCATATAGAAATTCAC+AGG | + | chr8.1:15790512-15790531 | MS.gene044475:intron | 30.0% | |
| TCATTAATGATCGTAGTTTG+TGG | + | chr8.1:15790636-15790655 | MS.gene044475:intron | 30.0% | |
| TGAAATGGAAGCTTCTATTA+TGG | + | chr8.1:15789864-15789883 | MS.gene044475:CDS | 30.0% | |
| TTCATAGTACTAGTAGTAGT+AGG | + | chr8.1:15790794-15790813 | MS.gene044475:intron | 30.0% | |
| ! | AATGTTTTCAATCACGATAG+TGG | + | chr8.1:15790360-15790379 | MS.gene044475:intron | 30.0% |
| !! | TTGGTAGTATCATTTTGGAT+TGG | - | chr8.1:15790919-15790938 | None:intergenic | 30.0% |
| !!! | AGTATCATTTTGGATTGGTT+GGG | - | chr8.1:15790914-15790933 | None:intergenic | 30.0% |
| !!! | TAGTATCATTTTGGATTGGT+TGG | - | chr8.1:15790915-15790934 | None:intergenic | 30.0% |
| AACAAAATGCTTGGTCGAAT+TGG | + | chr8.1:15791054-15791073 | MS.gene044475:CDS | 35.0% | |
| AATATTCCACACTTCAATGC+TGG | + | chr8.1:15789808-15789827 | MS.gene044475:CDS | 35.0% | |
| ATGGAAGCTTCTATTATGGA+TGG | + | chr8.1:15789868-15789887 | MS.gene044475:CDS | 35.0% | |
| CAGTTAATTGTTCCTTAGAC+CGG | - | chr8.1:15789698-15789717 | None:intergenic | 35.0% | |
| CTAAGGAACAATTAACTGAG+AGG | + | chr8.1:15789700-15789719 | MS.gene044475:intron | 35.0% | |
| GAGAAGGGAAAAAACACATT+AGG | - | chr8.1:15790841-15790860 | None:intergenic | 35.0% | |
| GATGGGAATACTATGAAATG+TGG | + | chr8.1:15789886-15789905 | MS.gene044475:CDS | 35.0% | |
| TGACTATCACCATTAGCAAA+TGG | - | chr8.1:15790958-15790977 | None:intergenic | 35.0% | |
| TGGAAGCTTCTATTATGGAT+GGG | + | chr8.1:15789869-15789888 | MS.gene044475:CDS | 35.0% | |
| TGTATGTGATCAATCAAACG+TGG | + | chr8.1:15790418-15790437 | MS.gene044475:intron | 35.0% | |
| TTTCTACAAGTTCCCACAAA+CGG | - | chr8.1:15790134-15790153 | None:intergenic | 35.0% | |
| ! | AAATTCACAGGTTTCTGAGA+AGG | + | chr8.1:15790524-15790543 | MS.gene044475:intron | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.1:15790009-15790028 | MS.gene044475:intron | 35.0% |
| ! | GGATTAGTGAACAAAATGCT+TGG | + | chr8.1:15791045-15791064 | MS.gene044475:CDS | 35.0% |
| !! | CAGTCTTGGTAGTATCATTT+TGG | - | chr8.1:15790924-15790943 | None:intergenic | 35.0% |
| !! | TGTTGTCAATGCTGTTTCTT+TGG | + | chr8.1:15789930-15789949 | MS.gene044475:CDS | 35.0% |
| AAAACTTGGTATCCGGTCTA+AGG | + | chr8.1:15789683-15789702 | MS.gene044475:intron | 40.0% | |
| AACTAGTCACCTTGAATTGC+TGG | + | chr8.1:15790575-15790594 | MS.gene044475:intron | 40.0% | |
| AAGATATCCTCGAGAGCTTA+TGG | - | chr8.1:15790196-15790215 | None:intergenic | 40.0% | |
| AGAAATCCACCAGCAATTCA+AGG | - | chr8.1:15790587-15790606 | None:intergenic | 40.0% | |
| ATCAGGCAAAAGAAGCAGAT+AGG | + | chr8.1:15790755-15790774 | MS.gene044475:CDS | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.1:15789595-15789614 | MS.gene044475:CDS | 40.0% | |
| CTTATTTCCATAAGCTCTCG+AGG | + | chr8.1:15790186-15790205 | MS.gene044475:intron | 40.0% | |
| GAGAGCTTATGGAAATAAGC+TGG | - | chr8.1:15790185-15790204 | None:intergenic | 40.0% | |
| GATAGTCAACTTGGAACTGT+TGG | + | chr8.1:15790970-15790989 | MS.gene044475:CDS | 40.0% | |
| GCAATGCCTTATAATACACC+AGG | + | chr8.1:15791300-15791319 | MS.gene044475:CDS | 40.0% | |
| GCTAATGGTGATAGTCAACT+TGG | + | chr8.1:15790961-15790980 | MS.gene044475:CDS | 40.0% | |
| GCTCTCGAGGATATCTTATA+TGG | + | chr8.1:15790199-15790218 | MS.gene044475:intron | 40.0% | |
| TACTGAAGATGGGTATTCTG+AGG | + | chr8.1:15791341-15791360 | MS.gene044475:CDS | 40.0% | |
| TATGTGCAGTTTCTGCAACA+GGG | + | chr8.1:15791118-15791137 | MS.gene044475:CDS | 40.0% | |
| TATGTTCCAGCACCTATGAT+TGG | - | chr8.1:15791087-15791106 | None:intergenic | 40.0% | |
| TCAGGCAAAAGAAGCAGATA+GGG | + | chr8.1:15790756-15790775 | MS.gene044475:CDS | 40.0% | |
| TCTGAGAAGGAACATACATG+TGG | + | chr8.1:15790537-15790556 | MS.gene044475:intron | 40.0% | |
| TGCATTCTTTCTGCACTTAG+AGG | - | chr8.1:15790499-15790518 | None:intergenic | 40.0% | |
| TTATGTGCAGTTTCTGCAAC+AGG | + | chr8.1:15791117-15791136 | MS.gene044475:CDS | 40.0% | |
| TTCACGTGTACGACATGTTT+GGG | + | chr8.1:15790065-15790084 | MS.gene044475:intron | 40.0% | |
| TTGCAATGCAATCGCAATCA+AGG | - | chr8.1:15790453-15790472 | None:intergenic | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.1:15789783-15789802 | MS.gene044475:intron | 40.0% | |
| TTTCACGTGTACGACATGTT+TGG | + | chr8.1:15790064-15790083 | MS.gene044475:intron | 40.0% | |
| ! | ACAGAAACGCCATTTGCTAA+TGG | + | chr8.1:15790946-15790965 | MS.gene044475:CDS | 40.0% |
| ! | ACCATTTTGGATACCGTTTG+TGG | + | chr8.1:15790118-15790137 | MS.gene044475:intron | 40.0% |
| ! | ATCGCAGAGGCGTAAAAATT+CGG | + | chr8.1:15790472-15790491 | MS.gene044475:intron | 40.0% |
| ! | CCATTTTGGATACCGTTTGT+GGG | + | chr8.1:15790119-15790138 | MS.gene044475:intron | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.1:15791183-15791202 | MS.gene044475:CDS | 40.0% |
| ! | TGAGAGCTTTGACACCAATT+TGG | - | chr8.1:15789586-15789605 | None:intergenic | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.1:15789945-15789964 | MS.gene044475:CDS | 40.0% |
| !! | ATGAAATGTGGTGCTGTTTC+TGG | + | chr8.1:15789898-15789917 | MS.gene044475:CDS | 40.0% |
| !! | GGTATTCTGAGGTTGCAATT+TGG | + | chr8.1:15791352-15791371 | MS.gene044475:CDS | 40.0% |
| !! | TGTGTAGCTGTTGATAGCAA+TGG | + | chr8.1:15790994-15791013 | MS.gene044475:CDS | 40.0% |
| !!! | TTTAGCTTTTGATGGAGCTG+AGG | + | chr8.1:15789987-15790006 | MS.gene044475:CDS | 40.0% |
| AAAAGAAGCAGATAGGGTCC+AGG | + | chr8.1:15790762-15790781 | MS.gene044475:CDS | 45.0% | |
| AAGAGATGTGGCTGCAATGA+TGG | + | chr8.1:15791173-15791192 | MS.gene044475:CDS | 45.0% | |
| AAGTTCAACGACGTCTAGAG+GGG | - | chr8.1:15789621-15789640 | None:intergenic | 45.0% | |
| ACAAGTTCAACGACGTCTAG+AGG | - | chr8.1:15789623-15789642 | None:intergenic | 45.0% | |
| ATTGGCGACACACCAATCAT+AGG | + | chr8.1:15791072-15791091 | MS.gene044475:CDS | 45.0% | |
| CAAGTTCAACGACGTCTAGA+GGG | - | chr8.1:15789622-15789641 | None:intergenic | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.1:15789851-15789870 | None:intergenic | 45.0% | |
| CCCACAAACGGTATCCAAAA+TGG | - | chr8.1:15790122-15790141 | None:intergenic | 45.0% | |
| CTAGCTTCAGCAACATCAAC+TGG | + | chr8.1:15791021-15791040 | MS.gene044475:CDS | 45.0% | |
| CTTCCAGTGGAAGTGAACAT+GGG | - | chr8.1:15789526-15789545 | None:intergenic | 45.0% | |
| GGTTCTGTTCTCACCAACAA+AGG | + | chr8.1:15789835-15789854 | MS.gene044475:CDS | 45.0% | |
| GTACATGAGCGCATACCAAA+GGG | + | chr8.1:15791237-15791256 | MS.gene044475:CDS | 45.0% | |
| TAGTCACCTTGAATTGCTGG+TGG | + | chr8.1:15790578-15790597 | MS.gene044475:intron | 45.0% | |
| TCAATCAAACGTGGCTCATG+TGG | + | chr8.1:15790427-15790446 | MS.gene044475:intron | 45.0% | |
| TCTCAACCCCCTGCAATATA+AGG | - | chr8.1:15790687-15790706 | None:intergenic | 45.0% | |
| TGGCGTTTCTGTTTCAGTCT+TGG | - | chr8.1:15790938-15790957 | None:intergenic | 45.0% | |
| TGTACATGAGCGCATACCAA+AGG | + | chr8.1:15791236-15791255 | MS.gene044475:CDS | 45.0% | |
| TGTTCTCACCAACAAAGGCA+CGG | + | chr8.1:15789840-15789859 | MS.gene044475:CDS | 45.0% | |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.1:15791330-15791349 | MS.gene044475:CDS | 45.0% |
| ! | ATAGGCGAAGCACTAATACG+CGG | + | chr8.1:15791141-15791160 | MS.gene044475:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.1:15789849-15789868 | MS.gene044475:CDS | 45.0% |
| ! | GAGCTTGTGCTACTGAAGAT+GGG | + | chr8.1:15791331-15791350 | MS.gene044475:CDS | 45.0% |
| ! | GAGCTTTGACACCAATTTGG+AGG | - | chr8.1:15789583-15789602 | None:intergenic | 45.0% |
| !! | GCACAAGCTCTAAACATTCC+TGG | - | chr8.1:15791321-15791340 | None:intergenic | 45.0% |
| !! | TGCTGTTTCTTTGGCTCGTT+TGG | + | chr8.1:15789939-15789958 | MS.gene044475:CDS | 45.0% |
| CACCAATTTGGAGGCAGTGA+CGG | - | chr8.1:15789574-15789593 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | + | chr8.1:15789814-15789833 | MS.gene044475:CDS | 50.0% | |
| CGATTGCATTGCAATCGCAG+AGG | + | chr8.1:15790459-15790478 | MS.gene044475:intron | 50.0% | |
| GACACACCAATCATAGGTGC+TGG | + | chr8.1:15791078-15791097 | MS.gene044475:CDS | 50.0% | |
| GCAGTTTCTGCAACAGGGAT+AGG | + | chr8.1:15791123-15791142 | MS.gene044475:CDS | 50.0% | |
| GCTTCAGCAACATCAACTGG+TGG | + | chr8.1:15791024-15791043 | MS.gene044475:CDS | 50.0% | |
| GCTTCCAGTGGAAGTGAACA+TGG | - | chr8.1:15789527-15789546 | None:intergenic | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | - | chr8.1:15789817-15789836 | None:intergenic | 50.0% |
| ! | TAGGCGAAGCACTAATACGC+GGG | + | chr8.1:15791142-15791161 | MS.gene044475:CDS | 50.0% |
| !! | ACCAAACCAAGAGTGCCCTT+TGG | - | chr8.1:15791255-15791274 | None:intergenic | 50.0% |
| !! | ACCAAAGGGCACTCTTGGTT+TGG | + | chr8.1:15791251-15791270 | MS.gene044475:CDS | 50.0% |
| CGGGACAGTAGCAAGAGATG+TGG | + | chr8.1:15791161-15791180 | MS.gene044475:CDS | 55.0% | |
| CGTCCCATGTTCACTTCCAC+TGG | + | chr8.1:15789520-15789539 | MS.gene044475:CDS | 55.0% | |
| CTCCGTCACTGCCTCCAAAT+TGG | + | chr8.1:15789569-15789588 | MS.gene044475:CDS | 55.0% | |
| TGGGCAGTAGCACTACATGG+CGG | + | chr8.1:15789491-15789510 | MS.gene044475:CDS | 55.0% | |
| TTGGTTGCTGTGTCTGCTGC+TGG | + | chr8.1:15791270-15791289 | MS.gene044475:CDS | 55.0% | |
| !! | CGCATACCAAAGGGCACTCT+TGG | + | chr8.1:15791246-15791265 | MS.gene044475:CDS | 55.0% |
| AGCTTCTTCGCGTGGCTGAC+GGG | - | chr8.1:15789549-15789568 | None:intergenic | 60.0% | |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.1:15789612-15789631 | None:intergenic | 60.0% | |
| GAGCTTCTTCGCGTGGCTGA+CGG | - | chr8.1:15789550-15789569 | None:intergenic | 60.0% | |
| GGCTGGGCAGTAGCACTACA+TGG | + | chr8.1:15789488-15789507 | MS.gene044475:CDS | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.1:15789557-15789576 | None:intergenic | 60.0% | |
| GTAGCACTACATGGCGGCGC+TGG | + | chr8.1:15789497-15789516 | MS.gene044475:CDS | 65.0% | |
| !! | CGTGGCTGACGGGCTTCCAG+TGG | - | chr8.1:15789539-15789558 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15789485 | 15791395 | 15789485 | ID=MS.gene044475 |
| chr8.1 | mRNA | 15789485 | 15791395 | 15789485 | ID=MS.gene044475.t1;Parent=MS.gene044475 |
| chr8.1 | exon | 15789485 | 15789643 | 15789485 | ID=MS.gene044475.t1.exon1;Parent=MS.gene044475.t1 |
| chr8.1 | CDS | 15789485 | 15789643 | 15789485 | ID=cds.MS.gene044475.t1;Parent=MS.gene044475.t1 |
| chr8.1 | exon | 15789793 | 15790026 | 15789793 | ID=MS.gene044475.t1.exon2;Parent=MS.gene044475.t1 |
| chr8.1 | CDS | 15789793 | 15790026 | 15789793 | ID=cds.MS.gene044475.t1;Parent=MS.gene044475.t1 |
| chr8.1 | exon | 15790697 | 15790783 | 15790697 | ID=MS.gene044475.t1.exon3;Parent=MS.gene044475.t1 |
| chr8.1 | CDS | 15790697 | 15790783 | 15790697 | ID=cds.MS.gene044475.t1;Parent=MS.gene044475.t1 |
| chr8.1 | exon | 15790901 | 15791395 | 15790901 | ID=MS.gene044475.t1.exon4;Parent=MS.gene044475.t1 |
| chr8.1 | CDS | 15790901 | 15791395 | 15790901 | ID=cds.MS.gene044475.t1;Parent=MS.gene044475.t1 |
| Gene Sequence |
| Protein sequence |
