Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063514.t1 | XP_013458020.1 | 96.9 | 324 | 10 | 0 | 1 | 324 | 1 | 324 | 2.50E-174 | 621.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063514.t1 | P50288 | 79.1 | 326 | 59 | 3 | 2 | 321 | 3 | 325 | 8.8e-144 | 511.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063514.t1 | A0A072URR5 | 96.9 | 324 | 10 | 0 | 1 | 324 | 1 | 324 | 1.8e-174 | 621.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24445 | MS.gene063514 | PPI |
| MS.gene015131 | MS.gene063514 | PPI |
| MS.gene34100 | MS.gene063514 | PPI |
| MS.gene38687 | MS.gene063514 | PPI |
| MS.gene063514 | MS.gene062544 | PPI |
| MS.gene063514 | MS.gene012937 | PPI |
| MS.gene32919 | MS.gene063514 | PPI |
| MS.gene63165 | MS.gene063514 | PPI |
| MS.gene063514 | MS.gene00469 | PPI |
| MS.gene044081 | MS.gene063514 | PPI |
| MS.gene063514 | MS.gene058167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063514.t1 | MTR_4g109900 | 96.914 | 324 | 10 | 0 | 1 | 324 | 1 | 324 | 0.0 | 647 |
| MS.gene063514.t1 | MTR_4g109920 | 91.692 | 325 | 26 | 1 | 1 | 324 | 1 | 325 | 0.0 | 606 |
| MS.gene063514.t1 | MTR_3g102370 | 59.317 | 322 | 123 | 2 | 2 | 318 | 3 | 321 | 2.61e-131 | 377 |
| MS.gene063514.t1 | MTR_1g018760 | 58.075 | 322 | 130 | 1 | 2 | 318 | 3 | 324 | 7.11e-130 | 373 |
| MS.gene063514.t1 | MTR_1g094030 | 58.333 | 324 | 125 | 2 | 1 | 319 | 2 | 320 | 1.55e-128 | 370 |
| MS.gene063514.t1 | MTR_8g031580 | 30.742 | 283 | 153 | 8 | 5 | 253 | 23 | 296 | 7.68e-27 | 108 |
| MS.gene063514.t1 | MTR_8g031580 | 30.742 | 283 | 153 | 8 | 5 | 253 | 23 | 296 | 2.14e-26 | 108 |
| MS.gene063514.t1 | MTR_3g008180 | 29.804 | 255 | 148 | 10 | 66 | 294 | 77 | 326 | 2.14e-16 | 79.3 |
| MS.gene063514.t1 | MTR_8g031580 | 27.586 | 203 | 108 | 6 | 84 | 253 | 1 | 197 | 1.01e-12 | 68.2 |
| MS.gene063514.t1 | MTR_3g008180 | 28.879 | 232 | 134 | 10 | 89 | 294 | 1 | 227 | 2.88e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063514.t1 | AT5G08100 | 72.897 | 321 | 78 | 2 | 1 | 320 | 2 | 314 | 2.16e-167 | 468 |
| MS.gene063514.t1 | AT3G16150 | 57.764 | 322 | 131 | 1 | 2 | 318 | 3 | 324 | 1.85e-131 | 377 |
| MS.gene063514.t1 | AT5G08100 | 73.554 | 242 | 56 | 1 | 79 | 320 | 1 | 234 | 6.81e-125 | 357 |
| MS.gene063514.t1 | AT4G00590 | 26.316 | 342 | 200 | 9 | 5 | 300 | 15 | 350 | 1.97e-20 | 91.7 |
| MS.gene063514.t1 | AT4G00590 | 27.134 | 328 | 200 | 11 | 5 | 300 | 15 | 335 | 1.12e-16 | 80.5 |
| MS.gene063514.t1 | AT5G61540 | 28.696 | 230 | 133 | 8 | 66 | 269 | 80 | 304 | 1.20e-16 | 80.1 |
| MS.gene063514.t1 | AT5G61540 | 27.660 | 235 | 136 | 10 | 89 | 294 | 1 | 230 | 3.46e-13 | 68.9 |
| MS.gene063514.t1 | AT5G61540 | 27.660 | 235 | 136 | 10 | 89 | 294 | 1 | 230 | 3.46e-13 | 68.9 |
Find 76 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTTGGTAATATCATTT+TGG | 0.170201 | 8.4:-17820473 | None:intergenic |
| ATGAAATGCGGTGCTGTTTC+TGG | 0.224336 | 8.4:+17819468 | MS.gene063514:CDS |
| TGTTGTCAATGCTGTTTCTT+TGG | 0.230934 | 8.4:+17819500 | MS.gene063514:CDS |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.251608 | 8.4:+17819515 | MS.gene063514:CDS |
| TGCTGTTTCTTTGGCTCGTT+TGG | 0.258446 | 8.4:+17819509 | MS.gene063514:CDS |
| AACATTCCTGGTGTATTATA+AGG | 0.283990 | 8.4:-17820858 | None:intergenic |
| ATCAGGCAAAAGAAGCAAAT+AGG | 0.299059 | 8.4:+17820312 | MS.gene063514:CDS |
| AACAAAATGGTTGGTCGAAT+TGG | 0.316402 | 8.4:+17820606 | MS.gene063514:CDS |
| CATTTCAACCGTGCCTTTGT+TGG | 0.327791 | 8.4:-17819418 | None:intergenic |
| GGTATTCTGAAGTTGCAATT+TGG | 0.344547 | 8.4:+17820904 | MS.gene063514:CDS |
| TCGCGTGGCTGACGGGCTTC+CGG | 0.346128 | 8.4:-17819104 | None:intergenic |
| TTAGTTGCTGTGTCTGCTGC+TGG | 0.355395 | 8.4:+17820822 | MS.gene063514:CDS |
| TTATGTGCAGTTTCTGCAAC+AGG | 0.369596 | 8.4:+17820669 | MS.gene063514:CDS |
| GAGCTTCTTCGCGTGGCTGA+CGG | 0.371844 | 8.4:-17819112 | None:intergenic |
| CAACAAAGGCACGGTTGAAA+TGG | 0.373150 | 8.4:+17819419 | MS.gene063514:CDS |
| AGCTTCTTCGCGTGGCTGAC+GGG | 0.383916 | 8.4:-17819111 | None:intergenic |
| TGAAATGGAAGCTTCTATAA+TGG | 0.384855 | 8.4:+17819434 | MS.gene063514:CDS |
| GCTAATGGTGATAGTCATCT+TGG | 0.387149 | 8.4:+17820513 | MS.gene063514:CDS |
| ATTCAAAGGTCTTTCTCTAA+AGG | 0.406833 | 8.4:+17820749 | MS.gene063514:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.415599 | 8.4:+17820882 | MS.gene063514:CDS |
| TCAGGCAAAAGAAGCAAATA+GGG | 0.422197 | 8.4:+17820313 | MS.gene063514:CDS |
| TGGTGTTTCTGTTTCACTCT+TGG | 0.425615 | 8.4:-17820487 | None:intergenic |
| CGCATACCAATGGGCACTGT+TGG | 0.440706 | 8.4:+17820798 | MS.gene063514:CDS |
| AAATATTGAAAGGCTAAATC+AGG | 0.441145 | 8.4:+17820295 | MS.gene063514:CDS |
| CTAGCTTCAGCAACATCAAC+TGG | 0.443431 | 8.4:+17820573 | MS.gene063514:CDS |
| GCACAAGCTCTAAACATTCC+TGG | 0.447190 | 8.4:-17820870 | None:intergenic |
| TGAGAGCTTTGACACCGATC+TGG | 0.449887 | 8.4:-17819148 | None:intergenic |
| ATTGGCGACACGCCACTCAT+AGG | 0.458956 | 8.4:+17820624 | MS.gene063514:CDS |
| GTAGCACTACACGGCGGCGC+TGG | 0.459640 | 8.4:+17819062 | MS.gene063514:CDS |
| ACAGAAACACCATTTGCTAA+TGG | 0.478619 | 8.4:+17820498 | MS.gene063514:CDS |
| CCACACTTCAATGCTGGTAG+AGG | 0.496753 | 8.4:+17819384 | MS.gene063514:CDS |
| TGGTGGATTAGTGAACAAAA+TGG | 0.500466 | 8.4:+17820593 | MS.gene063514:CDS |
| GCTTCCGGTGGAAGTGAACA+TGG | 0.502741 | 8.4:-17819089 | None:intergenic |
| AAGAGACGTGGCTGCAATGA+TGG | 0.505654 | 8.4:+17820725 | MS.gene063514:CDS |
| GCAGTTTCTGCAACAGGGAT+AGG | 0.517760 | 8.4:+17820675 | MS.gene063514:CDS |
| TCAAAAGCTAGATAAATATG+AGG | 0.520309 | 8.4:-17819546 | None:intergenic |
| CACCGATCTGGAGGCAATGA+CGG | 0.521864 | 8.4:-17819136 | None:intergenic |
| GATAGTCATCTTGGAACTGT+TGG | 0.524638 | 8.4:+17820522 | MS.gene063514:CDS |
| CTCCGTCATTGCCTCCAGAT+CGG | 0.531000 | 8.4:+17819134 | MS.gene063514:CDS |
| TGACTATCACCATTAGCAAA+TGG | 0.532229 | 8.4:-17820507 | None:intergenic |
| CGTGGCTGACGGGCTTCCGG+TGG | 0.536076 | 8.4:-17819101 | None:intergenic |
| CGTCCCATGTTCACTTCCAC+CGG | 0.538675 | 8.4:+17819085 | MS.gene063514:CDS |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.4:+17819353 | MS.gene063514:intron |
| ATGGAAGCTTCTATAATGGA+TGG | 0.542192 | 8.4:+17819438 | MS.gene063514:CDS |
| GTACACGAGCGCATACCAAT+GGG | 0.545632 | 8.4:+17820789 | MS.gene063514:CDS |
| CAAGTTCAATGACGTCTAGA+GGG | 0.547348 | 8.4:-17819184 | None:intergenic |
| GACACGCCACTCATAGGTGC+TGG | 0.548340 | 8.4:+17820630 | MS.gene063514:CDS |
| AATATTCCACACTTCAATGC+TGG | 0.552223 | 8.4:+17819378 | MS.gene063514:CDS |
| GAGCTTGTGCTACTGAAGAT+GGG | 0.553483 | 8.4:+17820883 | MS.gene063514:CDS |
| TGTACACGAGCGCATACCAA+TGG | 0.562995 | 8.4:+17820788 | MS.gene063514:CDS |
| GACGTCTAGAGGGGCCATGT+TGG | 0.567134 | 8.4:-17819174 | None:intergenic |
| AAAAGAAGCAAATAGGGTCC+AGG | 0.568354 | 8.4:+17820319 | MS.gene063514:CDS |
| AGAAACTGCACATAATTCGT+TGG | 0.573046 | 8.4:-17820661 | None:intergenic |
| ACAAGTTCAATGACGTCTAG+AGG | 0.599325 | 8.4:-17819185 | None:intergenic |
| GGTTCTGTTCTTACCAACAA+AGG | 0.614531 | 8.4:+17819405 | MS.gene063514:CDS |
| ACTAAACCAACAGTGCCCAT+TGG | 0.614693 | 8.4:-17820804 | None:intergenic |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.615772 | 8.4:-17819119 | None:intergenic |
| GGCTGGGCAGTAGCACTACA+CGG | 0.619395 | 8.4:+17819053 | MS.gene063514:CDS |
| GAGCTTTGACACCGATCTGG+AGG | 0.621212 | 8.4:-17819145 | None:intergenic |
| GGATTAGTGAACAAAATGGT+TGG | 0.625378 | 8.4:+17820597 | MS.gene063514:CDS |
| GCTTCAGCAACATCAACTGG+TGG | 0.625484 | 8.4:+17820576 | MS.gene063514:CDS |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.4:+17819160 | MS.gene063514:CDS |
| TGTGTAGCTGTTGATAGCTA+CGG | 0.628569 | 8.4:+17820546 | MS.gene063514:CDS |
| GCTGCAATGATGGAATTCAA+AGG | 0.639555 | 8.4:+17820735 | MS.gene063514:CDS |
| TAGGCGAAGCACTAATACGC+GGG | 0.640412 | 8.4:+17820694 | MS.gene063514:CDS |
| TATGTTCCAGCACCTATGAG+TGG | 0.651676 | 8.4:-17820636 | None:intergenic |
| GCAATGCCTTATAATACACC+AGG | 0.652456 | 8.4:+17820852 | MS.gene063514:CDS |
| TGTTCTTACCAACAAAGGCA+CGG | 0.657835 | 8.4:+17819410 | MS.gene063514:CDS |
| AAGTTCAATGACGTCTAGAG+GGG | 0.662820 | 8.4:-17819183 | None:intergenic |
| CCTCTACCAGCATTGAAGTG+TGG | 0.667371 | 8.4:-17819384 | None:intergenic |
| TATGTGCAGTTTCTGCAACA+GGG | 0.671046 | 8.4:+17820670 | MS.gene063514:CDS |
| CTTCCGGTGGAAGTGAACAT+GGG | 0.682054 | 8.4:-17819088 | None:intergenic |
| CGGGACAGTAGCAAGAGACG+TGG | 0.693457 | 8.4:+17820713 | MS.gene063514:CDS |
| GATGGAAATACTATGAAATG+CGG | 0.693488 | 8.4:+17819456 | MS.gene063514:CDS |
| TGGGCAGTAGCACTACACGG+CGG | 0.782765 | 8.4:+17819056 | MS.gene063514:CDS |
| ATAGGCGAAGCACTAATACG+CGG | 0.787645 | 8.4:+17820693 | MS.gene063514:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATATTAAAGTTTTGTT+TGG | - | chr8.4:17819896-17819915 | None:intergenic | 10.0% |
| !! | TATAAGTTATTCAATATGAT+AGG | - | chr8.4:17820415-17820434 | None:intergenic | 15.0% |
| !! | AAAACTTAAGAAAATGAGAT+TGG | - | chr8.4:17819617-17819636 | None:intergenic | 20.0% |
| !! | TAAATAATGATCGTAGTTTA+TGG | + | chr8.4:17820193-17820212 | MS.gene063514:intron | 20.0% |
| !! | TCATAATAATCATTGTTCAT+AGG | + | chr8.4:17819341-17819360 | MS.gene063514:intron | 20.0% |
| !! | TTACTCCAAAAAATATTGAA+AGG | + | chr8.4:17820285-17820304 | MS.gene063514:CDS | 20.0% |
| !!! | CATTTTCTTTTATGAAAACT+TGG | + | chr8.4:17819239-17819258 | MS.gene063514:intron | 20.0% |
| !!! | TATTTTTTGGAGTAATGAAA+TGG | - | chr8.4:17820280-17820299 | None:intergenic | 20.0% |
| !!! | TTTAGCCTTTCAATATTTTT+TGG | - | chr8.4:17820293-17820312 | None:intergenic | 20.0% |
| ! | AAATATTGAAAGGCTAAATC+AGG | + | chr8.4:17820295-17820314 | MS.gene063514:CDS | 25.0% |
| ! | GAATGCATAAAGAAATACAT+AGG | + | chr8.4:17820099-17820118 | MS.gene063514:intron | 25.0% |
| ! | TACTATGAAAGTTATATACC+TGG | - | chr8.4:17820340-17820359 | None:intergenic | 25.0% |
| ! | TATTCAATATGATAGGAGAA+GGG | - | chr8.4:17820408-17820427 | None:intergenic | 25.0% |
| ! | TCAAAAGCTAGATAAATATG+AGG | - | chr8.4:17819549-17819568 | None:intergenic | 25.0% |
| ! | TTATTCAATATGATAGGAGA+AGG | - | chr8.4:17820409-17820428 | None:intergenic | 25.0% |
| !! | ATTCACTAACATAACCATTT+TGG | + | chr8.4:17819675-17819694 | MS.gene063514:intron | 25.0% |
| !! | TTTTATGAAAACTTGGTATC+CGG | + | chr8.4:17819246-17819265 | MS.gene063514:intron | 25.0% |
| !!! | AATATCATTTTGGATTGGTT+GGG | - | chr8.4:17820466-17820485 | None:intergenic | 25.0% |
| !!! | ATCATATATCCTTATTTTGC+AGG | + | chr8.4:17820232-17820251 | MS.gene063514:intron | 25.0% |
| !!! | CATATTTATCTAGCTTTTGA+TGG | + | chr8.4:17819549-17819568 | MS.gene063514:CDS | 25.0% |
| !!! | TAATATCATTTTGGATTGGT+TGG | - | chr8.4:17820467-17820486 | None:intergenic | 25.0% |
| !!! | TCATATATCCTTATTTTGCA+GGG | + | chr8.4:17820233-17820252 | MS.gene063514:intron | 25.0% |
| !!! | TTGGTAATATCATTTTGGAT+TGG | - | chr8.4:17820471-17820490 | None:intergenic | 25.0% |
| AACATTCCTGGTGTATTATA+AGG | - | chr8.4:17820861-17820880 | None:intergenic | 30.0% | |
| AATCCAAACAAATCCTACAA+GGG | - | chr8.4:17819640-17819659 | None:intergenic | 30.0% | |
| ACTATCGTGATTGAAAACAT+TGG | - | chr8.4:17819941-17819960 | None:intergenic | 30.0% | |
| ATTCAAAGGTCTTTCTCTAA+AGG | + | chr8.4:17820749-17820768 | MS.gene063514:CDS | 30.0% | |
| ATTCAATATGATAGGAGAAG+GGG | - | chr8.4:17820407-17820426 | None:intergenic | 30.0% | |
| CAGAAGAAAGTTCAAATAGA+CGG | - | chr8.4:17819306-17819325 | None:intergenic | 30.0% | |
| GATGGAAATACTATGAAATG+CGG | + | chr8.4:17819456-17819475 | MS.gene063514:CDS | 30.0% | |
| TGAAATGGAAGCTTCTATAA+TGG | + | chr8.4:17819434-17819453 | MS.gene063514:CDS | 30.0% | |
| TTTCTATAAGTTCCCACAAA+CGG | - | chr8.4:17819704-17819723 | None:intergenic | 30.0% | |
| ! | AAATACATAGGTTTCTGAGA+AGG | + | chr8.4:17820111-17820130 | MS.gene063514:intron | 30.0% |
| ! | AATGTTTTCAATCACGATAG+TGG | + | chr8.4:17819940-17819959 | MS.gene063514:intron | 30.0% |
| ! | TTTCTTAAGTTTTCCCTTGT+AGG | + | chr8.4:17819624-17819643 | MS.gene063514:intron | 30.0% |
| !! | CACTCTTGGTAATATCATTT+TGG | - | chr8.4:17820476-17820495 | None:intergenic | 30.0% |
| !!! | ATATATCCTTATTTTGCAGG+GGG | + | chr8.4:17820235-17820254 | MS.gene063514:intron | 30.0% |
| !!! | CATATATCCTTATTTTGCAG+GGG | + | chr8.4:17820234-17820253 | MS.gene063514:intron | 30.0% |
| AATATTCCACACTTCAATGC+TGG | + | chr8.4:17819378-17819397 | MS.gene063514:CDS | 35.0% | |
| AGAAACTGCACATAATTCGT+TGG | - | chr8.4:17820664-17820683 | None:intergenic | 35.0% | |
| AGAAAGTTCAAATAGACGGT+AGG | - | chr8.4:17819302-17819321 | None:intergenic | 35.0% | |
| AGAAGGGGAAAAAACACATT+AGG | - | chr8.4:17820392-17820411 | None:intergenic | 35.0% | |
| ATCAGGCAAAAGAAGCAAAT+AGG | + | chr8.4:17820312-17820331 | MS.gene063514:CDS | 35.0% | |
| GAATCCAAACAAATCCTACA+AGG | - | chr8.4:17819641-17819660 | None:intergenic | 35.0% | |
| GTGTATTGCAATCGTAATCA+AGG | - | chr8.4:17820033-17820052 | None:intergenic | 35.0% | |
| TCAGGCAAAAGAAGCAAATA+GGG | + | chr8.4:17820313-17820332 | MS.gene063514:CDS | 35.0% | |
| TGACTATCACCATTAGCAAA+TGG | - | chr8.4:17820510-17820529 | None:intergenic | 35.0% | |
| ! | AACAAAATGGTTGGTCGAAT+TGG | + | chr8.4:17820606-17820625 | MS.gene063514:CDS | 35.0% |
| ! | ACAGAAACACCATTTGCTAA+TGG | + | chr8.4:17820498-17820517 | MS.gene063514:CDS | 35.0% |
| ! | ATGGAAGCTTCTATAATGGA+TGG | + | chr8.4:17819438-17819457 | MS.gene063514:CDS | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.4:17819579-17819598 | MS.gene063514:intron | 35.0% |
| ! | GGATTAGTGAACAAAATGGT+TGG | + | chr8.4:17820597-17820616 | MS.gene063514:CDS | 35.0% |
| ! | TTTCCCTTGTAGGATTTGTT+TGG | + | chr8.4:17819634-17819653 | MS.gene063514:intron | 35.0% |
| !! | GGTATTCTGAAGTTGCAATT+TGG | + | chr8.4:17820904-17820923 | MS.gene063514:CDS | 35.0% |
| !! | TGGTGGATTAGTGAACAAAA+TGG | + | chr8.4:17820593-17820612 | MS.gene063514:CDS | 35.0% |
| !! | TGTTGTCAATGCTGTTTCTT+TGG | + | chr8.4:17819500-17819519 | MS.gene063514:CDS | 35.0% |
| AAAACTTGGTATCCGGTCTA+AGG | + | chr8.4:17819253-17819272 | MS.gene063514:intron | 40.0% | |
| AAAAGAAGCAAATAGGGTCC+AGG | + | chr8.4:17820319-17820338 | MS.gene063514:CDS | 40.0% | |
| AACTAGTCACCTTGAATTGC+TGG | + | chr8.4:17820162-17820181 | MS.gene063514:intron | 40.0% | |
| AAGTTCAATGACGTCTAGAG+GGG | - | chr8.4:17819186-17819205 | None:intergenic | 40.0% | |
| ACAAGTTCAATGACGTCTAG+AGG | - | chr8.4:17819188-17819207 | None:intergenic | 40.0% | |
| AGAAATCCACCAGCAATTCA+AGG | - | chr8.4:17820174-17820193 | None:intergenic | 40.0% | |
| ATCGCAGAGACGTAAAAACT+CGG | + | chr8.4:17820059-17820078 | MS.gene063514:intron | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.4:17819160-17819179 | MS.gene063514:CDS | 40.0% | |
| CAAGTTCAATGACGTCTAGA+GGG | - | chr8.4:17819187-17819206 | None:intergenic | 40.0% | |
| CTAAGGAACAATTAACCCAG+AGG | + | chr8.4:17819270-17819289 | MS.gene063514:intron | 40.0% | |
| GAGATGTGATCAATCAAACG+TGG | + | chr8.4:17819998-17820017 | MS.gene063514:intron | 40.0% | |
| GATAGTCATCTTGGAACTGT+TGG | + | chr8.4:17820522-17820541 | MS.gene063514:CDS | 40.0% | |
| GCAATGCCTTATAATACACC+AGG | + | chr8.4:17820852-17820871 | MS.gene063514:CDS | 40.0% | |
| GCTAATGGTGATAGTCATCT+TGG | + | chr8.4:17820513-17820532 | MS.gene063514:CDS | 40.0% | |
| GCTCTCGAGGATATGTTATA+TGG | + | chr8.4:17819769-17819788 | MS.gene063514:intron | 40.0% | |
| GGGTTAATTGTTCCTTAGAC+CGG | - | chr8.4:17819268-17819287 | None:intergenic | 40.0% | |
| GGTTCTGTTCTTACCAACAA+AGG | + | chr8.4:17819405-17819424 | MS.gene063514:CDS | 40.0% | |
| TATGTGCAGTTTCTGCAACA+GGG | + | chr8.4:17820670-17820689 | MS.gene063514:CDS | 40.0% | |
| TGCATTCTTTCTGCACTTAG+AGG | - | chr8.4:17820086-17820105 | None:intergenic | 40.0% | |
| TGTTCTTACCAACAAAGGCA+CGG | + | chr8.4:17819410-17819429 | MS.gene063514:CDS | 40.0% | |
| TTATGTGCAGTTTCTGCAAC+AGG | + | chr8.4:17820669-17820688 | MS.gene063514:CDS | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.4:17819353-17819372 | MS.gene063514:intron | 40.0% | |
| ! | ACCATTTTGGATACCGTTTG+TGG | + | chr8.4:17819688-17819707 | MS.gene063514:intron | 40.0% |
| ! | CCATTTTGGATACCGTTTGT+GGG | + | chr8.4:17819689-17819708 | MS.gene063514:intron | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.4:17820735-17820754 | MS.gene063514:CDS | 40.0% |
| ! | TGGTGTTTCTGTTTCACTCT+TGG | - | chr8.4:17820490-17820509 | None:intergenic | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.4:17819515-17819534 | MS.gene063514:CDS | 40.0% |
| !! | TGTGTAGCTGTTGATAGCTA+CGG | + | chr8.4:17820546-17820565 | MS.gene063514:CDS | 40.0% |
| AACATATCCTCGAGAGCTCA+TGG | - | chr8.4:17819766-17819785 | None:intergenic | 45.0% | |
| ACTAAACCAACAGTGCCCAT+TGG | - | chr8.4:17820807-17820826 | None:intergenic | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.4:17819421-17819440 | None:intergenic | 45.0% | |
| CCCACAAACGGTATCCAAAA+TGG | - | chr8.4:17819692-17819711 | None:intergenic | 45.0% | |
| CTAGCTTCAGCAACATCAAC+TGG | + | chr8.4:17820573-17820592 | MS.gene063514:CDS | 45.0% | |
| CTTATTTCCATGAGCTCTCG+AGG | + | chr8.4:17819756-17819775 | MS.gene063514:intron | 45.0% | |
| GAGAGCTCATGGAAATAAGC+TGG | - | chr8.4:17819755-17819774 | None:intergenic | 45.0% | |
| TAGTCACCTTGAATTGCTGG+TGG | + | chr8.4:17820165-17820184 | MS.gene063514:intron | 45.0% | |
| TATGTTCCAGCACCTATGAG+TGG | - | chr8.4:17820639-17820658 | None:intergenic | 45.0% | |
| TCAATCAAACGTGGCTCATG+TGG | + | chr8.4:17820007-17820026 | MS.gene063514:intron | 45.0% | |
| TCTCAACCCCCTGCAAAATA+AGG | - | chr8.4:17820244-17820263 | None:intergenic | 45.0% | |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.4:17820882-17820901 | MS.gene063514:CDS | 45.0% |
| ! | ATAGGCGAAGCACTAATACG+CGG | + | chr8.4:17820693-17820712 | MS.gene063514:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.4:17819419-17819438 | MS.gene063514:CDS | 45.0% |
| ! | GAGCTTGTGCTACTGAAGAT+GGG | + | chr8.4:17820883-17820902 | MS.gene063514:CDS | 45.0% |
| ! | TCTGAGAAGGAGCATACATG+TGG | + | chr8.4:17820124-17820143 | MS.gene063514:intron | 45.0% |
| !! | ATGAAATGCGGTGCTGTTTC+TGG | + | chr8.4:17819468-17819487 | MS.gene063514:CDS | 45.0% |
| !! | GCACAAGCTCTAAACATTCC+TGG | - | chr8.4:17820873-17820892 | None:intergenic | 45.0% |
| !! | TGCTGTTTCTTTGGCTCGTT+TGG | + | chr8.4:17819509-17819528 | MS.gene063514:CDS | 45.0% |
| !!! | TCTAGCTTTTGATGGAGCTG+AGG | + | chr8.4:17819557-17819576 | MS.gene063514:CDS | 45.0% |
| AAGAGACGTGGCTGCAATGA+TGG | + | chr8.4:17820725-17820744 | MS.gene063514:CDS | 50.0% | |
| AGACGGTAGGATTAGACCTC+TGG | - | chr8.4:17819289-17819308 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | + | chr8.4:17819384-17819403 | MS.gene063514:CDS | 50.0% | |
| CTTCCGGTGGAAGTGAACAT+GGG | - | chr8.4:17819091-17819110 | None:intergenic | 50.0% | |
| GACGGTAGGATTAGACCTCT+GGG | - | chr8.4:17819288-17819307 | None:intergenic | 50.0% | |
| GCAGTTTCTGCAACAGGGAT+AGG | + | chr8.4:17820675-17820694 | MS.gene063514:CDS | 50.0% | |
| GCTTCAGCAACATCAACTGG+TGG | + | chr8.4:17820576-17820595 | MS.gene063514:CDS | 50.0% | |
| GTACACGAGCGCATACCAAT+GGG | + | chr8.4:17820789-17820808 | MS.gene063514:CDS | 50.0% | |
| TGTACACGAGCGCATACCAA+TGG | + | chr8.4:17820788-17820807 | MS.gene063514:CDS | 50.0% | |
| TTAGTTGCTGTGTCTGCTGC+TGG | + | chr8.4:17820822-17820841 | MS.gene063514:CDS | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | - | chr8.4:17819387-17819406 | None:intergenic | 50.0% |
| ! | TAGGCGAAGCACTAATACGC+GGG | + | chr8.4:17820694-17820713 | MS.gene063514:CDS | 50.0% |
| ! | TGAGAGCTTTGACACCGATC+TGG | - | chr8.4:17819151-17819170 | None:intergenic | 50.0% |
| ATTGGCGACACGCCACTCAT+AGG | + | chr8.4:17820624-17820643 | MS.gene063514:CDS | 55.0% | |
| CACCGATCTGGAGGCAATGA+CGG | - | chr8.4:17819139-17819158 | None:intergenic | 55.0% | |
| CGTCCCATGTTCACTTCCAC+CGG | + | chr8.4:17819085-17819104 | MS.gene063514:CDS | 55.0% | |
| CTCCGTCATTGCCTCCAGAT+CGG | + | chr8.4:17819134-17819153 | MS.gene063514:CDS | 55.0% | |
| GCTTCCGGTGGAAGTGAACA+TGG | - | chr8.4:17819092-17819111 | None:intergenic | 55.0% | |
| ! | CGCATACCAATGGGCACTGT+TGG | + | chr8.4:17820798-17820817 | MS.gene063514:CDS | 55.0% |
| ! | GAGCTTTGACACCGATCTGG+AGG | - | chr8.4:17819148-17819167 | None:intergenic | 55.0% |
| AGCTTCTTCGCGTGGCTGAC+GGG | - | chr8.4:17819114-17819133 | None:intergenic | 60.0% | |
| CGGGACAGTAGCAAGAGACG+TGG | + | chr8.4:17820713-17820732 | MS.gene063514:CDS | 60.0% | |
| GACACGCCACTCATAGGTGC+TGG | + | chr8.4:17820630-17820649 | MS.gene063514:CDS | 60.0% | |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.4:17819177-17819196 | None:intergenic | 60.0% | |
| GAGCTTCTTCGCGTGGCTGA+CGG | - | chr8.4:17819115-17819134 | None:intergenic | 60.0% | |
| GGCTGGGCAGTAGCACTACA+CGG | + | chr8.4:17819053-17819072 | MS.gene063514:CDS | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.4:17819122-17819141 | None:intergenic | 60.0% | |
| TGGGCAGTAGCACTACACGG+CGG | + | chr8.4:17819056-17819075 | MS.gene063514:CDS | 60.0% | |
| GTAGCACTACACGGCGGCGC+TGG | + | chr8.4:17819062-17819081 | MS.gene063514:CDS | 70.0% | |
| !! | TCGCGTGGCTGACGGGCTTC+CGG | - | chr8.4:17819107-17819126 | None:intergenic | 70.0% |
| !! | CGTGGCTGACGGGCTTCCGG+TGG | - | chr8.4:17819104-17819123 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17819050 | 17820947 | 17819050 | ID=MS.gene063514 |
| chr8.4 | mRNA | 17819050 | 17820947 | 17819050 | ID=MS.gene063514.t1;Parent=MS.gene063514 |
| chr8.4 | exon | 17819050 | 17819208 | 17819050 | ID=MS.gene063514.t1.exon1;Parent=MS.gene063514.t1 |
| chr8.4 | CDS | 17819050 | 17819208 | 17819050 | ID=cds.MS.gene063514.t1;Parent=MS.gene063514.t1 |
| chr8.4 | exon | 17819363 | 17819596 | 17819363 | ID=MS.gene063514.t1.exon2;Parent=MS.gene063514.t1 |
| chr8.4 | CDS | 17819363 | 17819596 | 17819363 | ID=cds.MS.gene063514.t1;Parent=MS.gene063514.t1 |
| chr8.4 | exon | 17820254 | 17820340 | 17820254 | ID=MS.gene063514.t1.exon3;Parent=MS.gene063514.t1 |
| chr8.4 | CDS | 17820254 | 17820340 | 17820254 | ID=cds.MS.gene063514.t1;Parent=MS.gene063514.t1 |
| chr8.4 | exon | 17820453 | 17820947 | 17820453 | ID=MS.gene063514.t1.exon4;Parent=MS.gene063514.t1 |
| chr8.4 | CDS | 17820453 | 17820947 | 17820453 | ID=cds.MS.gene063514.t1;Parent=MS.gene063514.t1 |
| Gene Sequence |
| Protein sequence |
