Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038825.t1 | XP_013458020.1 | 96.6 | 324 | 11 | 0 | 1 | 324 | 1 | 324 | 9.50E-174 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038825.t1 | P50288 | 79.1 | 326 | 59 | 3 | 2 | 321 | 3 | 325 | 1.5e-143 | 510.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038825.t1 | A0A072URR5 | 96.6 | 324 | 11 | 0 | 1 | 324 | 1 | 324 | 6.9e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038825 | MS.gene062544 | PPI |
| MS.gene044081 | MS.gene038825 | PPI |
| MS.gene038825 | MS.gene00469 | PPI |
| MS.gene015131 | MS.gene038825 | PPI |
| MS.gene24445 | MS.gene038825 | PPI |
| MS.gene38687 | MS.gene038825 | PPI |
| MS.gene038825 | MS.gene012937 | PPI |
| MS.gene038825 | MS.gene058167 | PPI |
| MS.gene34100 | MS.gene038825 | PPI |
| MS.gene32919 | MS.gene038825 | PPI |
| MS.gene63165 | MS.gene038825 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038825.t1 | MTR_4g109900 | 96.605 | 324 | 11 | 0 | 1 | 324 | 1 | 324 | 0.0 | 644 |
| MS.gene038825.t1 | MTR_4g109920 | 91.692 | 325 | 26 | 1 | 1 | 324 | 1 | 325 | 0.0 | 604 |
| MS.gene038825.t1 | MTR_3g102370 | 59.627 | 322 | 122 | 2 | 2 | 318 | 3 | 321 | 6.29e-133 | 381 |
| MS.gene038825.t1 | MTR_1g018760 | 58.385 | 322 | 129 | 1 | 2 | 318 | 3 | 324 | 1.85e-131 | 377 |
| MS.gene038825.t1 | MTR_1g094030 | 58.642 | 324 | 124 | 2 | 1 | 319 | 2 | 320 | 4.50e-130 | 374 |
| MS.gene038825.t1 | MTR_8g031580 | 30.389 | 283 | 154 | 8 | 5 | 253 | 23 | 296 | 4.27e-26 | 106 |
| MS.gene038825.t1 | MTR_8g031580 | 31.228 | 285 | 149 | 9 | 5 | 253 | 23 | 296 | 1.17e-25 | 106 |
| MS.gene038825.t1 | MTR_3g008180 | 29.804 | 255 | 148 | 10 | 66 | 294 | 77 | 326 | 6.28e-16 | 77.8 |
| MS.gene038825.t1 | MTR_8g031580 | 27.094 | 203 | 109 | 6 | 84 | 253 | 1 | 197 | 4.57e-12 | 66.2 |
| MS.gene038825.t1 | MTR_3g008180 | 28.879 | 232 | 134 | 10 | 89 | 294 | 1 | 227 | 7.05e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038825.t1 | AT5G08100 | 73.209 | 321 | 77 | 2 | 1 | 320 | 2 | 314 | 8.35e-168 | 469 |
| MS.gene038825.t1 | AT3G16150 | 58.075 | 322 | 130 | 1 | 2 | 318 | 3 | 324 | 6.34e-133 | 381 |
| MS.gene038825.t1 | AT5G08100 | 73.967 | 242 | 55 | 1 | 79 | 320 | 1 | 234 | 2.41e-125 | 358 |
| MS.gene038825.t1 | AT4G00590 | 27.515 | 338 | 201 | 11 | 5 | 300 | 15 | 350 | 2.94e-20 | 90.9 |
| MS.gene038825.t1 | AT5G61540 | 29.130 | 230 | 132 | 8 | 66 | 269 | 80 | 304 | 8.79e-17 | 80.5 |
| MS.gene038825.t1 | AT4G00590 | 27.439 | 328 | 199 | 12 | 5 | 300 | 15 | 335 | 1.37e-16 | 80.1 |
| MS.gene038825.t1 | AT5G61540 | 28.085 | 235 | 135 | 10 | 89 | 294 | 1 | 230 | 2.38e-13 | 69.3 |
| MS.gene038825.t1 | AT5G61540 | 28.085 | 235 | 135 | 10 | 89 | 294 | 1 | 230 | 2.38e-13 | 69.3 |
Find 78 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTTGGTAATATCATTT+TGG | 0.170201 | 8.3:-14985794 | None:intergenic |
| ATGAAATGCGGTGCTGTTTC+TGG | 0.224336 | 8.3:+14984789 | MS.gene038825:CDS |
| TGTTGTCAATGCTGTTTCTT+TGG | 0.230934 | 8.3:+14984821 | MS.gene038825:CDS |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.251608 | 8.3:+14984836 | MS.gene038825:CDS |
| TGCTGTTTCTTTGGCTCGTT+TGG | 0.258446 | 8.3:+14984830 | MS.gene038825:CDS |
| AACATTCCTGGTGTATTATA+AGG | 0.283990 | 8.3:-14986179 | None:intergenic |
| ATCAGGCAAAAGAAGCAAAT+AGG | 0.299059 | 8.3:+14985633 | MS.gene038825:CDS |
| TTCATTACTCCAGAAAATAT+TGG | 0.300100 | 8.3:+14985602 | MS.gene038825:CDS |
| AACAAAATGGTTGGTCGAAT+TGG | 0.316402 | 8.3:+14985927 | MS.gene038825:CDS |
| CATTTCAACCGTGCCTTTGT+TGG | 0.327791 | 8.3:-14984739 | None:intergenic |
| GGTATTCTGAAGTTGCAATT+TGG | 0.344547 | 8.3:+14986225 | MS.gene038825:CDS |
| TCGCGTGGCTGACGGGCTTC+CGG | 0.346128 | 8.3:-14984425 | None:intergenic |
| TTAGTTGCTGTGTCTGCTGC+TGG | 0.355395 | 8.3:+14986143 | MS.gene038825:CDS |
| TTATGTGCAGTTTCTGCAAC+AGG | 0.369596 | 8.3:+14985990 | MS.gene038825:CDS |
| GAGCTTCTTCGCGTGGCTGA+CGG | 0.371844 | 8.3:-14984433 | None:intergenic |
| CAACAAAGGCACGGTTGAAA+TGG | 0.373150 | 8.3:+14984740 | MS.gene038825:CDS |
| AGCTTCTTCGCGTGGCTGAC+GGG | 0.383916 | 8.3:-14984432 | None:intergenic |
| TGAAATGGAAGCTTCTATAA+TGG | 0.384855 | 8.3:+14984755 | MS.gene038825:CDS |
| GCTAATGGTGATAGTCATCT+TGG | 0.387149 | 8.3:+14985834 | MS.gene038825:CDS |
| ATTCAAAGGTCTTTCTCTAA+AGG | 0.406833 | 8.3:+14986070 | MS.gene038825:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.415599 | 8.3:+14986203 | MS.gene038825:CDS |
| TCAGGCAAAAGAAGCAAATA+GGG | 0.422197 | 8.3:+14985634 | MS.gene038825:CDS |
| TGGTGTTTCTGTTTCACTCT+TGG | 0.425615 | 8.3:-14985808 | None:intergenic |
| CGCATGCCAATGGGCACTGT+TGG | 0.438826 | 8.3:+14986119 | MS.gene038825:CDS |
| AAATATTGGAAGGCTAAATC+AGG | 0.439945 | 8.3:+14985616 | MS.gene038825:CDS |
| CTAGCTTCAGCAACATCAAC+TGG | 0.443431 | 8.3:+14985894 | MS.gene038825:CDS |
| GCACAAGCTCTAAACATTCC+TGG | 0.447190 | 8.3:-14986191 | None:intergenic |
| TGAGAGCTTTGACACCGATC+TGG | 0.449887 | 8.3:-14984469 | None:intergenic |
| ATTGGCGACACGCCACTCAT+AGG | 0.458956 | 8.3:+14985945 | MS.gene038825:CDS |
| GTAGCACTACACGGCGGCGC+TGG | 0.459640 | 8.3:+14984383 | MS.gene038825:CDS |
| ACAGAAACACCATTTGCTAA+TGG | 0.478619 | 8.3:+14985819 | MS.gene038825:CDS |
| CCACACTTCAATGCTGGTAG+AGG | 0.496753 | 8.3:+14984705 | MS.gene038825:CDS |
| TGGTGGATTAGTGAACAAAA+TGG | 0.500466 | 8.3:+14985914 | MS.gene038825:CDS |
| GCTTCCGGTGGAAGTGAACA+TGG | 0.502741 | 8.3:-14984410 | None:intergenic |
| AAGAGACGTGGCTGCAATGA+TGG | 0.505654 | 8.3:+14986046 | MS.gene038825:CDS |
| TGTACACGAGCGCATGCCAA+TGG | 0.511398 | 8.3:+14986109 | MS.gene038825:CDS |
| GCAGTTTCTGCAACAGGGAT+AGG | 0.517760 | 8.3:+14985996 | MS.gene038825:CDS |
| TCAAAAGCTAGATAAATATG+AGG | 0.520309 | 8.3:-14984867 | None:intergenic |
| GTACACGAGCGCATGCCAAT+GGG | 0.520757 | 8.3:+14986110 | MS.gene038825:CDS |
| CACCGATCTGGAGGCAATGA+CGG | 0.521864 | 8.3:-14984457 | None:intergenic |
| GATAGTCATCTTGGAACTGT+TGG | 0.524638 | 8.3:+14985843 | MS.gene038825:CDS |
| CTCCGTCATTGCCTCCAGAT+CGG | 0.531000 | 8.3:+14984455 | MS.gene038825:CDS |
| TGACTATCACCATTAGCAAA+TGG | 0.532229 | 8.3:-14985828 | None:intergenic |
| CGTGGCTGACGGGCTTCCGG+TGG | 0.536076 | 8.3:-14984422 | None:intergenic |
| CGTCCCATGTTCACTTCCAC+CGG | 0.538675 | 8.3:+14984406 | MS.gene038825:CDS |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.3:+14984674 | MS.gene038825:intron |
| ATGGAAGCTTCTATAATGGA+TGG | 0.542192 | 8.3:+14984759 | MS.gene038825:CDS |
| CAAGTTCAATGACGTCTAGA+GGG | 0.547348 | 8.3:-14984505 | None:intergenic |
| GACACGCCACTCATAGGTGC+TGG | 0.548340 | 8.3:+14985951 | MS.gene038825:CDS |
| AATATTCCACACTTCAATGC+TGG | 0.552223 | 8.3:+14984699 | MS.gene038825:CDS |
| GAGCTTGTGCTACTGAAGAT+GGG | 0.553483 | 8.3:+14986204 | MS.gene038825:CDS |
| GACGTCTAGAGGGGCCATGT+TGG | 0.567134 | 8.3:-14984495 | None:intergenic |
| AAAAGAAGCAAATAGGGTCC+AGG | 0.568354 | 8.3:+14985640 | MS.gene038825:CDS |
| AGAAACTGCACATAATTCGT+TGG | 0.573046 | 8.3:-14985982 | None:intergenic |
| TTACTCCAGAAAATATTGGA+AGG | 0.596900 | 8.3:+14985606 | MS.gene038825:CDS |
| ACAAGTTCAATGACGTCTAG+AGG | 0.599325 | 8.3:-14984506 | None:intergenic |
| ACTAAACCAACAGTGCCCAT+TGG | 0.613456 | 8.3:-14986125 | None:intergenic |
| GGTTCTGTTCTTACCAACAA+AGG | 0.614531 | 8.3:+14984726 | MS.gene038825:CDS |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.615772 | 8.3:-14984440 | None:intergenic |
| GGCTGGGCAGTAGCACTACA+CGG | 0.619395 | 8.3:+14984374 | MS.gene038825:CDS |
| GAGCTTTGACACCGATCTGG+AGG | 0.621212 | 8.3:-14984466 | None:intergenic |
| GGATTAGTGAACAAAATGGT+TGG | 0.625378 | 8.3:+14985918 | MS.gene038825:CDS |
| GCTTCAGCAACATCAACTGG+TGG | 0.625484 | 8.3:+14985897 | MS.gene038825:CDS |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.3:+14984481 | MS.gene038825:CDS |
| TGTGTAGCTGTTGATAGCTA+CGG | 0.628569 | 8.3:+14985867 | MS.gene038825:CDS |
| GCTGCAATGATGGAATTCAA+AGG | 0.639555 | 8.3:+14986056 | MS.gene038825:CDS |
| TAGGCGAAGCACTAATACGC+GGG | 0.640412 | 8.3:+14986015 | MS.gene038825:CDS |
| TATGTTCCAGCACCTATGAG+TGG | 0.651676 | 8.3:-14985957 | None:intergenic |
| GCAATGCCTTATAATACACC+AGG | 0.652456 | 8.3:+14986173 | MS.gene038825:CDS |
| TGTTCTTACCAACAAAGGCA+CGG | 0.657835 | 8.3:+14984731 | MS.gene038825:CDS |
| AAGTTCAATGACGTCTAGAG+GGG | 0.662820 | 8.3:-14984504 | None:intergenic |
| CCTCTACCAGCATTGAAGTG+TGG | 0.667371 | 8.3:-14984705 | None:intergenic |
| TATGTGCAGTTTCTGCAACA+GGG | 0.671046 | 8.3:+14985991 | MS.gene038825:CDS |
| CTTCCGGTGGAAGTGAACAT+GGG | 0.682054 | 8.3:-14984409 | None:intergenic |
| CGGGACAGTAGCAAGAGACG+TGG | 0.693457 | 8.3:+14986034 | MS.gene038825:CDS |
| GATGGAAATACTATGAAATG+CGG | 0.693488 | 8.3:+14984777 | MS.gene038825:CDS |
| TGGGCAGTAGCACTACACGG+CGG | 0.782765 | 8.3:+14984377 | MS.gene038825:CDS |
| ATAGGCGAAGCACTAATACG+CGG | 0.787645 | 8.3:+14986014 | MS.gene038825:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATATTAAAGTTTTGTT+TGG | - | chr8.3:14985217-14985236 | None:intergenic | 10.0% |
| !! | TATAAGTTATTCAATATGAT+AGG | - | chr8.3:14985736-14985755 | None:intergenic | 15.0% |
| !! | AAAACTTAAGAAAATGAGAT+TGG | - | chr8.3:14984938-14984957 | None:intergenic | 20.0% |
| !! | TAAATAATGATCGTAGATTA+TGG | + | chr8.3:14985514-14985533 | MS.gene038825:intron | 20.0% |
| !! | TCATAATAATCATTGTTCAT+AGG | + | chr8.3:14984662-14984681 | MS.gene038825:intron | 20.0% |
| !!! | CATTTTCTTTTATGAAAACT+TGG | + | chr8.3:14984560-14984579 | MS.gene038825:intron | 20.0% |
| ! | GAATGCATAAAGAAATACAT+AGG | + | chr8.3:14985420-14985439 | MS.gene038825:intron | 25.0% |
| ! | TACTATGAAAGTTATATACC+TGG | - | chr8.3:14985661-14985680 | None:intergenic | 25.0% |
| ! | TATTCAATATGATAGGAGAA+GGG | - | chr8.3:14985729-14985748 | None:intergenic | 25.0% |
| ! | TCAAAAGCTAGATAAATATG+AGG | - | chr8.3:14984870-14984889 | None:intergenic | 25.0% |
| ! | TTATTCAATATGATAGGAGA+AGG | - | chr8.3:14985730-14985749 | None:intergenic | 25.0% |
| ! | TTCATTACTCCAGAAAATAT+TGG | + | chr8.3:14985602-14985621 | MS.gene038825:CDS | 25.0% |
| !! | ATTCACTAACATAACCATTT+TGG | + | chr8.3:14984996-14985015 | MS.gene038825:intron | 25.0% |
| !! | TTTTATGAAAACTTGGTATC+CGG | + | chr8.3:14984567-14984586 | MS.gene038825:intron | 25.0% |
| !!! | AATATCATTTTGGATTGGTT+GGG | - | chr8.3:14985787-14985806 | None:intergenic | 25.0% |
| !!! | ATCATATATCCTTATTTTGC+AGG | + | chr8.3:14985553-14985572 | MS.gene038825:intron | 25.0% |
| !!! | CATATTTATCTAGCTTTTGA+TGG | + | chr8.3:14984870-14984889 | MS.gene038825:CDS | 25.0% |
| !!! | TAATATCATTTTGGATTGGT+TGG | - | chr8.3:14985788-14985807 | None:intergenic | 25.0% |
| !!! | TATTTTCTGGAGTAATGAAA+TGG | - | chr8.3:14985601-14985620 | None:intergenic | 25.0% |
| !!! | TCATATATCCTTATTTTGCA+GGG | + | chr8.3:14985554-14985573 | MS.gene038825:intron | 25.0% |
| !!! | TTGGTAATATCATTTTGGAT+TGG | - | chr8.3:14985792-14985811 | None:intergenic | 25.0% |
| AAATATTGGAAGGCTAAATC+AGG | + | chr8.3:14985616-14985635 | MS.gene038825:CDS | 30.0% | |
| AACATTCCTGGTGTATTATA+AGG | - | chr8.3:14986182-14986201 | None:intergenic | 30.0% | |
| AATCCAAACAAATCCTACAA+GGG | - | chr8.3:14984961-14984980 | None:intergenic | 30.0% | |
| ACTATCGTGATTGAAAACAT+TGG | - | chr8.3:14985262-14985281 | None:intergenic | 30.0% | |
| ATTCAAAGGTCTTTCTCTAA+AGG | + | chr8.3:14986070-14986089 | MS.gene038825:CDS | 30.0% | |
| ATTCAATATGATAGGAGAAG+GGG | - | chr8.3:14985728-14985747 | None:intergenic | 30.0% | |
| CAGAAGAAAGTTCAAATAGA+CGG | - | chr8.3:14984627-14984646 | None:intergenic | 30.0% | |
| GATGGAAATACTATGAAATG+CGG | + | chr8.3:14984777-14984796 | MS.gene038825:CDS | 30.0% | |
| TGAAATGGAAGCTTCTATAA+TGG | + | chr8.3:14984755-14984774 | MS.gene038825:CDS | 30.0% | |
| TTACTCCAGAAAATATTGGA+AGG | + | chr8.3:14985606-14985625 | MS.gene038825:CDS | 30.0% | |
| TTTCTATAAGTTCCCACAAA+CGG | - | chr8.3:14985025-14985044 | None:intergenic | 30.0% | |
| ! | AAATACATAGGTTTCTGAGA+AGG | + | chr8.3:14985432-14985451 | MS.gene038825:intron | 30.0% |
| ! | AATGTTTTCAATCACGATAG+TGG | + | chr8.3:14985261-14985280 | MS.gene038825:intron | 30.0% |
| ! | TTTCTTAAGTTTTCCCTTGT+AGG | + | chr8.3:14984945-14984964 | MS.gene038825:intron | 30.0% |
| !! | CACTCTTGGTAATATCATTT+TGG | - | chr8.3:14985797-14985816 | None:intergenic | 30.0% |
| !! | TTTAGCCTTCCAATATTTTC+TGG | - | chr8.3:14985614-14985633 | None:intergenic | 30.0% |
| !!! | ATATATCCTTATTTTGCAGG+GGG | + | chr8.3:14985556-14985575 | MS.gene038825:intron | 30.0% |
| !!! | CATATATCCTTATTTTGCAG+GGG | + | chr8.3:14985555-14985574 | MS.gene038825:intron | 30.0% |
| AATATTCCACACTTCAATGC+TGG | + | chr8.3:14984699-14984718 | MS.gene038825:CDS | 35.0% | |
| AGAAACTGCACATAATTCGT+TGG | - | chr8.3:14985985-14986004 | None:intergenic | 35.0% | |
| AGAAAGTTCAAATAGACGGT+AGG | - | chr8.3:14984623-14984642 | None:intergenic | 35.0% | |
| AGAAGGGGAAAAAACACATT+AGG | - | chr8.3:14985713-14985732 | None:intergenic | 35.0% | |
| ATCAGGCAAAAGAAGCAAAT+AGG | + | chr8.3:14985633-14985652 | MS.gene038825:CDS | 35.0% | |
| GAATCCAAACAAATCCTACA+AGG | - | chr8.3:14984962-14984981 | None:intergenic | 35.0% | |
| GTGTATTGCAATCGTAATCA+AGG | - | chr8.3:14985354-14985373 | None:intergenic | 35.0% | |
| TCAGGCAAAAGAAGCAAATA+GGG | + | chr8.3:14985634-14985653 | MS.gene038825:CDS | 35.0% | |
| TGACTATCACCATTAGCAAA+TGG | - | chr8.3:14985831-14985850 | None:intergenic | 35.0% | |
| ! | AACAAAATGGTTGGTCGAAT+TGG | + | chr8.3:14985927-14985946 | MS.gene038825:CDS | 35.0% |
| ! | ACAGAAACACCATTTGCTAA+TGG | + | chr8.3:14985819-14985838 | MS.gene038825:CDS | 35.0% |
| ! | ATGGAAGCTTCTATAATGGA+TGG | + | chr8.3:14984759-14984778 | MS.gene038825:CDS | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.3:14984900-14984919 | MS.gene038825:intron | 35.0% |
| ! | GGATTAGTGAACAAAATGGT+TGG | + | chr8.3:14985918-14985937 | MS.gene038825:CDS | 35.0% |
| ! | TTTCCCTTGTAGGATTTGTT+TGG | + | chr8.3:14984955-14984974 | MS.gene038825:intron | 35.0% |
| !! | GGTATTCTGAAGTTGCAATT+TGG | + | chr8.3:14986225-14986244 | MS.gene038825:CDS | 35.0% |
| !! | TGGTGGATTAGTGAACAAAA+TGG | + | chr8.3:14985914-14985933 | MS.gene038825:CDS | 35.0% |
| !! | TGTTGTCAATGCTGTTTCTT+TGG | + | chr8.3:14984821-14984840 | MS.gene038825:CDS | 35.0% |
| AAAACTTGGTATCCGGTCTA+AGG | + | chr8.3:14984574-14984593 | MS.gene038825:intron | 40.0% | |
| AAAAGAAGCAAATAGGGTCC+AGG | + | chr8.3:14985640-14985659 | MS.gene038825:CDS | 40.0% | |
| AACTAGTCACCTTGAATTGC+TGG | + | chr8.3:14985483-14985502 | MS.gene038825:intron | 40.0% | |
| AAGTTCAATGACGTCTAGAG+GGG | - | chr8.3:14984507-14984526 | None:intergenic | 40.0% | |
| ACAAGTTCAATGACGTCTAG+AGG | - | chr8.3:14984509-14984528 | None:intergenic | 40.0% | |
| AGAAATCCACCAGCAATTCA+AGG | - | chr8.3:14985495-14985514 | None:intergenic | 40.0% | |
| ATCGCAGAGACGTAAAAACT+CGG | + | chr8.3:14985380-14985399 | MS.gene038825:intron | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.3:14984481-14984500 | MS.gene038825:CDS | 40.0% | |
| CAAGTTCAATGACGTCTAGA+GGG | - | chr8.3:14984508-14984527 | None:intergenic | 40.0% | |
| CTAAGGAACAATTAACCCAG+AGG | + | chr8.3:14984591-14984610 | MS.gene038825:intron | 40.0% | |
| GAGATGTGATCAATCAAACG+TGG | + | chr8.3:14985319-14985338 | MS.gene038825:intron | 40.0% | |
| GATAGTCATCTTGGAACTGT+TGG | + | chr8.3:14985843-14985862 | MS.gene038825:CDS | 40.0% | |
| GCAATGCCTTATAATACACC+AGG | + | chr8.3:14986173-14986192 | MS.gene038825:CDS | 40.0% | |
| GCTAATGGTGATAGTCATCT+TGG | + | chr8.3:14985834-14985853 | MS.gene038825:CDS | 40.0% | |
| GCTCTCGAGGATATGTTATA+TGG | + | chr8.3:14985090-14985109 | MS.gene038825:intron | 40.0% | |
| GGGTTAATTGTTCCTTAGAC+CGG | - | chr8.3:14984589-14984608 | None:intergenic | 40.0% | |
| GGTTCTGTTCTTACCAACAA+AGG | + | chr8.3:14984726-14984745 | MS.gene038825:CDS | 40.0% | |
| TATGTGCAGTTTCTGCAACA+GGG | + | chr8.3:14985991-14986010 | MS.gene038825:CDS | 40.0% | |
| TGCATTCTTTCTGCACTTAG+AGG | - | chr8.3:14985407-14985426 | None:intergenic | 40.0% | |
| TGTTCTTACCAACAAAGGCA+CGG | + | chr8.3:14984731-14984750 | MS.gene038825:CDS | 40.0% | |
| TTATGTGCAGTTTCTGCAAC+AGG | + | chr8.3:14985990-14986009 | MS.gene038825:CDS | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.3:14984674-14984693 | MS.gene038825:intron | 40.0% | |
| ! | ACCATTTTGGATACCGTTTG+TGG | + | chr8.3:14985009-14985028 | MS.gene038825:intron | 40.0% |
| ! | CCATTTTGGATACCGTTTGT+GGG | + | chr8.3:14985010-14985029 | MS.gene038825:intron | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.3:14986056-14986075 | MS.gene038825:CDS | 40.0% |
| ! | TGGTGTTTCTGTTTCACTCT+TGG | - | chr8.3:14985811-14985830 | None:intergenic | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.3:14984836-14984855 | MS.gene038825:CDS | 40.0% |
| !! | TGTGTAGCTGTTGATAGCTA+CGG | + | chr8.3:14985867-14985886 | MS.gene038825:CDS | 40.0% |
| AACATATCCTCGAGAGCTCA+TGG | - | chr8.3:14985087-14985106 | None:intergenic | 45.0% | |
| ACTAAACCAACAGTGCCCAT+TGG | - | chr8.3:14986128-14986147 | None:intergenic | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.3:14984742-14984761 | None:intergenic | 45.0% | |
| CCCACAAACGGTATCCAAAA+TGG | - | chr8.3:14985013-14985032 | None:intergenic | 45.0% | |
| CTAGCTTCAGCAACATCAAC+TGG | + | chr8.3:14985894-14985913 | MS.gene038825:CDS | 45.0% | |
| CTTATTTCCATGAGCTCTCG+AGG | + | chr8.3:14985077-14985096 | MS.gene038825:intron | 45.0% | |
| GAGAGCTCATGGAAATAAGC+TGG | - | chr8.3:14985076-14985095 | None:intergenic | 45.0% | |
| TAGTCACCTTGAATTGCTGG+TGG | + | chr8.3:14985486-14985505 | MS.gene038825:intron | 45.0% | |
| TATGTTCCAGCACCTATGAG+TGG | - | chr8.3:14985960-14985979 | None:intergenic | 45.0% | |
| TCAATCAAACGTGGCTCATG+TGG | + | chr8.3:14985328-14985347 | MS.gene038825:intron | 45.0% | |
| TCTCAACCCCCTGCAAAATA+AGG | - | chr8.3:14985565-14985584 | None:intergenic | 45.0% | |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.3:14986203-14986222 | MS.gene038825:CDS | 45.0% |
| ! | ATAGGCGAAGCACTAATACG+CGG | + | chr8.3:14986014-14986033 | MS.gene038825:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.3:14984740-14984759 | MS.gene038825:CDS | 45.0% |
| ! | GAGCTTGTGCTACTGAAGAT+GGG | + | chr8.3:14986204-14986223 | MS.gene038825:CDS | 45.0% |
| ! | TCTGAGAAGGAGCATACATG+TGG | + | chr8.3:14985445-14985464 | MS.gene038825:intron | 45.0% |
| !! | ATGAAATGCGGTGCTGTTTC+TGG | + | chr8.3:14984789-14984808 | MS.gene038825:CDS | 45.0% |
| !! | GCACAAGCTCTAAACATTCC+TGG | - | chr8.3:14986194-14986213 | None:intergenic | 45.0% |
| !! | TGCTGTTTCTTTGGCTCGTT+TGG | + | chr8.3:14984830-14984849 | MS.gene038825:CDS | 45.0% |
| !!! | TCTAGCTTTTGATGGAGCTG+AGG | + | chr8.3:14984878-14984897 | MS.gene038825:CDS | 45.0% |
| AAGAGACGTGGCTGCAATGA+TGG | + | chr8.3:14986046-14986065 | MS.gene038825:CDS | 50.0% | |
| AGACGGTAGGATTAGACCTC+TGG | - | chr8.3:14984610-14984629 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | + | chr8.3:14984705-14984724 | MS.gene038825:CDS | 50.0% | |
| CTTCCGGTGGAAGTGAACAT+GGG | - | chr8.3:14984412-14984431 | None:intergenic | 50.0% | |
| GACGGTAGGATTAGACCTCT+GGG | - | chr8.3:14984609-14984628 | None:intergenic | 50.0% | |
| GCAGTTTCTGCAACAGGGAT+AGG | + | chr8.3:14985996-14986015 | MS.gene038825:CDS | 50.0% | |
| GCTTCAGCAACATCAACTGG+TGG | + | chr8.3:14985897-14985916 | MS.gene038825:CDS | 50.0% | |
| TTAGTTGCTGTGTCTGCTGC+TGG | + | chr8.3:14986143-14986162 | MS.gene038825:CDS | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | - | chr8.3:14984708-14984727 | None:intergenic | 50.0% |
| ! | TAGGCGAAGCACTAATACGC+GGG | + | chr8.3:14986015-14986034 | MS.gene038825:CDS | 50.0% |
| ! | TGAGAGCTTTGACACCGATC+TGG | - | chr8.3:14984472-14984491 | None:intergenic | 50.0% |
| ATTGGCGACACGCCACTCAT+AGG | + | chr8.3:14985945-14985964 | MS.gene038825:CDS | 55.0% | |
| CACCGATCTGGAGGCAATGA+CGG | - | chr8.3:14984460-14984479 | None:intergenic | 55.0% | |
| CGTCCCATGTTCACTTCCAC+CGG | + | chr8.3:14984406-14984425 | MS.gene038825:CDS | 55.0% | |
| CTCCGTCATTGCCTCCAGAT+CGG | + | chr8.3:14984455-14984474 | MS.gene038825:CDS | 55.0% | |
| GCTTCCGGTGGAAGTGAACA+TGG | - | chr8.3:14984413-14984432 | None:intergenic | 55.0% | |
| GTACACGAGCGCATGCCAAT+GGG | + | chr8.3:14986110-14986129 | MS.gene038825:CDS | 55.0% | |
| TGTACACGAGCGCATGCCAA+TGG | + | chr8.3:14986109-14986128 | MS.gene038825:CDS | 55.0% | |
| ! | GAGCTTTGACACCGATCTGG+AGG | - | chr8.3:14984469-14984488 | None:intergenic | 55.0% |
| AGCTTCTTCGCGTGGCTGAC+GGG | - | chr8.3:14984435-14984454 | None:intergenic | 60.0% | |
| CGGGACAGTAGCAAGAGACG+TGG | + | chr8.3:14986034-14986053 | MS.gene038825:CDS | 60.0% | |
| GACACGCCACTCATAGGTGC+TGG | + | chr8.3:14985951-14985970 | MS.gene038825:CDS | 60.0% | |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.3:14984498-14984517 | None:intergenic | 60.0% | |
| GAGCTTCTTCGCGTGGCTGA+CGG | - | chr8.3:14984436-14984455 | None:intergenic | 60.0% | |
| GGCTGGGCAGTAGCACTACA+CGG | + | chr8.3:14984374-14984393 | MS.gene038825:CDS | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.3:14984443-14984462 | None:intergenic | 60.0% | |
| TGGGCAGTAGCACTACACGG+CGG | + | chr8.3:14984377-14984396 | MS.gene038825:CDS | 60.0% | |
| ! | CGCATGCCAATGGGCACTGT+TGG | + | chr8.3:14986119-14986138 | MS.gene038825:CDS | 60.0% |
| GTAGCACTACACGGCGGCGC+TGG | + | chr8.3:14984383-14984402 | MS.gene038825:CDS | 70.0% | |
| !! | TCGCGTGGCTGACGGGCTTC+CGG | - | chr8.3:14984428-14984447 | None:intergenic | 70.0% |
| !! | CGTGGCTGACGGGCTTCCGG+TGG | - | chr8.3:14984425-14984444 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 14984371 | 14986268 | 14984371 | ID=MS.gene038825 |
| chr8.3 | mRNA | 14984371 | 14986268 | 14984371 | ID=MS.gene038825.t1;Parent=MS.gene038825 |
| chr8.3 | exon | 14984371 | 14984529 | 14984371 | ID=MS.gene038825.t1.exon1;Parent=MS.gene038825.t1 |
| chr8.3 | CDS | 14984371 | 14984529 | 14984371 | ID=cds.MS.gene038825.t1;Parent=MS.gene038825.t1 |
| chr8.3 | exon | 14984684 | 14984917 | 14984684 | ID=MS.gene038825.t1.exon2;Parent=MS.gene038825.t1 |
| chr8.3 | CDS | 14984684 | 14984917 | 14984684 | ID=cds.MS.gene038825.t1;Parent=MS.gene038825.t1 |
| chr8.3 | exon | 14985575 | 14985661 | 14985575 | ID=MS.gene038825.t1.exon3;Parent=MS.gene038825.t1 |
| chr8.3 | CDS | 14985575 | 14985661 | 14985575 | ID=cds.MS.gene038825.t1;Parent=MS.gene038825.t1 |
| chr8.3 | exon | 14985774 | 14986268 | 14985774 | ID=MS.gene038825.t1.exon4;Parent=MS.gene038825.t1 |
| chr8.3 | CDS | 14985774 | 14986268 | 14985774 | ID=cds.MS.gene038825.t1;Parent=MS.gene038825.t1 |
| Gene Sequence |
| Protein sequence |
