Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044476.t1 | XP_013458022.1 | 95.7 | 325 | 14 | 0 | 1 | 325 | 1 | 325 | 1.40E-172 | 615.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044476.t1 | P50288 | 82.4 | 324 | 49 | 2 | 2 | 320 | 3 | 323 | 2.8e-150 | 532.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044476.t1 | A0A072USJ6 | 95.7 | 325 | 14 | 0 | 1 | 325 | 1 | 325 | 1.0e-172 | 615.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044476 | MS.gene00469 | PPI |
| MS.gene044476 | MS.gene062544 | PPI |
| MS.gene044476 | MS.gene012937 | PPI |
| MS.gene015131 | MS.gene044476 | PPI |
| MS.gene34100 | MS.gene044476 | PPI |
| MS.gene38687 | MS.gene044476 | PPI |
| MS.gene32919 | MS.gene044476 | PPI |
| MS.gene63165 | MS.gene044476 | PPI |
| MS.gene044476 | MS.gene058167 | PPI |
| MS.gene044081 | MS.gene044476 | PPI |
| MS.gene24445 | MS.gene044476 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044476.t1 | MTR_4g109920 | 95.692 | 325 | 14 | 0 | 1 | 325 | 1 | 325 | 0.0 | 640 |
| MS.gene044476.t1 | MTR_4g109900 | 93.538 | 325 | 20 | 1 | 1 | 325 | 1 | 324 | 0.0 | 625 |
| MS.gene044476.t1 | MTR_3g102370 | 60.062 | 323 | 120 | 3 | 2 | 319 | 3 | 321 | 5.02e-133 | 381 |
| MS.gene044476.t1 | MTR_1g094030 | 59.877 | 324 | 119 | 3 | 1 | 319 | 2 | 319 | 3.08e-131 | 377 |
| MS.gene044476.t1 | MTR_1g018760 | 58.514 | 323 | 128 | 2 | 2 | 319 | 3 | 324 | 1.10e-130 | 375 |
| MS.gene044476.t1 | MTR_8g031580 | 30.035 | 283 | 156 | 7 | 5 | 254 | 23 | 296 | 1.83e-26 | 107 |
| MS.gene044476.t1 | MTR_8g031580 | 30.035 | 283 | 156 | 7 | 5 | 254 | 23 | 296 | 5.67e-26 | 107 |
| MS.gene044476.t1 | MTR_3g008180 | 28.740 | 254 | 152 | 9 | 67 | 295 | 77 | 326 | 2.00e-15 | 76.6 |
| MS.gene044476.t1 | MTR_8g031580 | 26.601 | 203 | 110 | 6 | 85 | 254 | 1 | 197 | 2.09e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044476.t1 | AT5G08100 | 76.012 | 321 | 69 | 1 | 1 | 321 | 2 | 314 | 1.22e-177 | 494 |
| MS.gene044476.t1 | AT3G16150 | 58.514 | 323 | 128 | 2 | 2 | 319 | 3 | 324 | 4.69e-133 | 382 |
| MS.gene044476.t1 | AT5G08100 | 76.033 | 242 | 50 | 1 | 80 | 321 | 1 | 234 | 5.71e-130 | 370 |
| MS.gene044476.t1 | AT4G00590 | 25.672 | 335 | 204 | 8 | 5 | 297 | 15 | 346 | 1.73e-22 | 97.4 |
| MS.gene044476.t1 | AT4G00590 | 25.538 | 325 | 202 | 9 | 5 | 297 | 15 | 331 | 1.72e-18 | 85.9 |
| MS.gene044476.t1 | AT5G61540 | 29.258 | 229 | 133 | 8 | 67 | 270 | 80 | 304 | 5.33e-16 | 78.2 |
| MS.gene044476.t1 | AT5G61540 | 28.205 | 234 | 136 | 10 | 90 | 295 | 1 | 230 | 1.18e-12 | 67.4 |
| MS.gene044476.t1 | AT5G61540 | 28.205 | 234 | 136 | 10 | 90 | 295 | 1 | 230 | 1.18e-12 | 67.4 |
Find 80 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATACGCCTAATATTTATT+TGG | 0.199041 | 8.1:+15786891 | MS.gene044476:CDS |
| CACTCTTGGTAGGATCATTT+TGG | 0.204412 | 8.1:-15787871 | None:intergenic |
| AACATTCCTGTTGTATTATA+AGG | 0.204789 | 8.1:-15788256 | None:intergenic |
| CGTTCCGGTGGAAGTGAATA+TGG | 0.211132 | 8.1:-15786347 | None:intergenic |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.246722 | 8.1:+15786867 | MS.gene044476:CDS |
| TGCCGTTTCTTTGGCTCGTT+TGG | 0.294974 | 8.1:+15786861 | MS.gene044476:CDS |
| ATCAGGCAAAAGAAGCAAAT+AGG | 0.299059 | 8.1:+15787710 | MS.gene044476:CDS |
| TGAGAGCTTTGACACCAATT+TGG | 0.303094 | 8.1:-15786406 | None:intergenic |
| TGTTGTGAATGCCGTTTCTT+TGG | 0.303246 | 8.1:+15786852 | MS.gene044476:CDS |
| GCTACTCAGAGGTTGCTATT+TGG | 0.304286 | 8.1:+15788302 | MS.gene044476:CDS |
| CATTTCAACCGTGCCTTTGT+TGG | 0.327791 | 8.1:-15786770 | None:intergenic |
| CTCCGTCACTGCCTCCAAAT+TGG | 0.364282 | 8.1:+15786392 | MS.gene044476:CDS |
| CAACAAAGGCACGGTTGAAA+TGG | 0.373150 | 8.1:+15786771 | MS.gene044476:CDS |
| ATGGTTGCTGTGTCTGCTGC+TGG | 0.378968 | 8.1:+15788220 | MS.gene044476:CDS |
| AACAAGATGGTTGGTCGAAT+TGG | 0.379538 | 8.1:+15788004 | MS.gene044476:CDS |
| TGAAATGGAAGCTTCTATAA+TGG | 0.384855 | 8.1:+15786786 | MS.gene044476:CDS |
| TCAAAAGCCAAATAAATATT+AGG | 0.389516 | 8.1:-15786898 | None:intergenic |
| TCGCGTGGTTGACGGCGTTC+CGG | 0.399989 | 8.1:-15786362 | None:intergenic |
| TTATGTGCAGTTTCTGCAAC+AGG | 0.401688 | 8.1:+15788067 | MS.gene044476:CDS |
| GAGCTTCTTCGCGTGGTTGA+CGG | 0.403682 | 8.1:-15786370 | None:intergenic |
| ATGAAATGTGGTGCTGTGTC+TGG | 0.412256 | 8.1:+15786820 | MS.gene044476:CDS |
| AAATATTGAAAGGCTAAATC+AGG | 0.416374 | 8.1:+15787693 | MS.gene044476:CDS |
| TCAGGCAAAAGAAGCAAATA+GGG | 0.422197 | 8.1:+15787711 | MS.gene044476:CDS |
| CTAGCTTCTGCAACATCAAC+CGG | 0.423930 | 8.1:+15787971 | MS.gene044476:CDS |
| TGGTGTTTCTGTTTCACTCT+TGG | 0.426981 | 8.1:-15787885 | None:intergenic |
| GTTTCTGTTTCACTCTTGGT+AGG | 0.442883 | 8.1:-15787881 | None:intergenic |
| AGAAACTGCACATAATTCAT+TGG | 0.443619 | 8.1:-15788059 | None:intergenic |
| ATTGGCGACACGCCACTCAT+AGG | 0.458956 | 8.1:+15788022 | MS.gene044476:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.462101 | 8.1:+15788280 | MS.gene044476:CDS |
| ATAGCTCTACACGGCGGCGC+CGG | 0.464394 | 8.1:+15786317 | MS.gene044476:CDS |
| GCAATGCCTTATAATACAAC+AGG | 0.464408 | 8.1:+15788250 | MS.gene044476:CDS |
| GCAGTTTCTGCAACAGGTAA+AGG | 0.485743 | 8.1:+15788073 | MS.gene044476:CDS |
| ATTCAAAGGTCTCTCTCTAA+AGG | 0.490069 | 8.1:+15788147 | MS.gene044476:CDS |
| ACAGAAACACCAGTTGCTAA+TGG | 0.490461 | 8.1:+15787896 | MS.gene044476:CDS |
| ACCATACCAACAGTGCCCTT+TGG | 0.495938 | 8.1:-15788202 | None:intergenic |
| CCACACTTCAATGCTGGTAG+AGG | 0.496753 | 8.1:+15786736 | MS.gene044476:CDS |
| ACCAAAGGGCACTGTTGGTA+TGG | 0.498908 | 8.1:+15788201 | MS.gene044476:CDS |
| TGACTATCACCATTAGCAAC+TGG | 0.501796 | 8.1:-15787905 | None:intergenic |
| AAGAGATGTGGCTGCAATGA+TGG | 0.524648 | 8.1:+15788123 | MS.gene044476:CDS |
| GTTCCGGTGGAAGTGAATAT+GGG | 0.527909 | 8.1:-15786346 | None:intergenic |
| CACCAATTTGGAGGCAGTGA+CGG | 0.530368 | 8.1:-15786394 | None:intergenic |
| CGCACACCAAAGGGCACTGT+TGG | 0.530836 | 8.1:+15788196 | MS.gene044476:CDS |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.1:+15786705 | MS.gene044476:intron |
| ATGGAAGCTTCTATAATGGA+TGG | 0.542192 | 8.1:+15786790 | MS.gene044476:CDS |
| CAAGTTCAACGACGTCTAGA+GGG | 0.545254 | 8.1:-15786442 | None:intergenic |
| GTACATGAGCGCACACCAAA+GGG | 0.545609 | 8.1:+15788187 | MS.gene044476:CDS |
| GACACGCCACTCATAGGTGC+TGG | 0.548340 | 8.1:+15788028 | MS.gene044476:CDS |
| GAGCTTTGACACCAATTTGG+AGG | 0.548680 | 8.1:-15786403 | None:intergenic |
| TGTGTAGCTGTTGATAGTAA+TGG | 0.549412 | 8.1:+15787944 | MS.gene044476:CDS |
| CGTGGTTGACGGCGTTCCGG+TGG | 0.549993 | 8.1:-15786359 | None:intergenic |
| AACCAAACGAGCCAAAGAAA+CGG | 0.550876 | 8.1:-15786863 | None:intergenic |
| AATATTCCACACTTCAATGC+TGG | 0.552223 | 8.1:+15786730 | MS.gene044476:CDS |
| CATCTTGTTCACTAATCCAC+CGG | 0.557068 | 8.1:-15787990 | None:intergenic |
| AAAAGAAGCAAATAGGGTCC+AGG | 0.568354 | 8.1:+15787717 | MS.gene044476:CDS |
| GATAGTCAACTCGGAACTGT+TGG | 0.571797 | 8.1:+15787920 | MS.gene044476:CDS |
| TTACTCCAGAAAATATTGAA+AGG | 0.577051 | 8.1:+15787683 | MS.gene044476:CDS |
| GGATTAGTGAACAAGATGGT+TGG | 0.581947 | 8.1:+15787995 | MS.gene044476:CDS |
| GACGTCTAGAGGGGCCATGT+TGG | 0.581967 | 8.1:-15786432 | None:intergenic |
| ACAAGTTCAACGACGTCTAG+AGG | 0.588579 | 8.1:-15786443 | None:intergenic |
| CATCCCATATTCACTTCCAC+CGG | 0.593610 | 8.1:+15786343 | MS.gene044476:CDS |
| TGTACATGAGCGCACACCAA+AGG | 0.600192 | 8.1:+15788186 | MS.gene044476:CDS |
| GGTTCTGTTCTTACCAACAA+AGG | 0.614531 | 8.1:+15786757 | MS.gene044476:CDS |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.615307 | 8.1:-15786377 | None:intergenic |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.1:+15786418 | MS.gene044476:CDS |
| CGGTGGATTAGTGAACAAGA+TGG | 0.646608 | 8.1:+15787991 | MS.gene044476:CDS |
| TATGTTCCAGCACCTATGAG+TGG | 0.651676 | 8.1:-15788034 | None:intergenic |
| GCTAATGGTGATAGTCAACT+CGG | 0.652387 | 8.1:+15787911 | MS.gene044476:CDS |
| AAGTGAATATGGGATGTCGC+CGG | 0.653946 | 8.1:-15786336 | None:intergenic |
| TGTTCTTACCAACAAAGGCA+CGG | 0.657835 | 8.1:+15786762 | MS.gene044476:CDS |
| CGGGACAGTAGCAAGAGATG+TGG | 0.659071 | 8.1:+15788111 | MS.gene044476:CDS |
| AAGTTCAACGACGTCTAGAG+GGG | 0.663048 | 8.1:-15786441 | None:intergenic |
| GATGGAAATACTATGAAATG+TGG | 0.663282 | 8.1:+15786808 | MS.gene044476:CDS |
| GCTTCTGCAACATCAACCGG+TGG | 0.666858 | 8.1:+15787974 | MS.gene044476:CDS |
| CCTCTACCAGCATTGAAGTG+TGG | 0.667371 | 8.1:-15786736 | None:intergenic |
| AAGGCGAAGCAATAATACGC+GGG | 0.680912 | 8.1:+15788092 | MS.gene044476:CDS |
| TACTGAAGATGGCTACTCAG+AGG | 0.693227 | 8.1:+15788291 | MS.gene044476:CDS |
| GCTGCAATGATGGAATTCAA+AGG | 0.699018 | 8.1:+15788133 | MS.gene044476:CDS |
| GGTTGGGCAATAGCTCTACA+CGG | 0.703748 | 8.1:+15786308 | MS.gene044476:CDS |
| AAAGGCGAAGCAATAATACG+CGG | 0.736661 | 8.1:+15788091 | MS.gene044476:CDS |
| TGGGCAATAGCTCTACACGG+CGG | 0.798330 | 8.1:+15786311 | MS.gene044476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAACTTATAGAAATAATTT+AGG | + | chr8.1:15787063-15787082 | MS.gene044476:intron | 15.0% |
| !! | ATAAGTAAATTCAATATCAT+AGG | - | chr8.1:15787812-15787831 | None:intergenic | 15.0% |
| !! | TTATAATAATCATTGTTCAT+AGG | + | chr8.1:15786693-15786712 | MS.gene044476:intron | 15.0% |
| !! | TTTAATGTAATTATATGTGT+TGG | - | chr8.1:15786557-15786576 | None:intergenic | 15.0% |
| !!! | AAAGATATTTATTTTTCACA+AGG | - | chr8.1:15787502-15787521 | None:intergenic | 15.0% |
| !!! | CATTATATTAAAGTTTTGTT+TGG | - | chr8.1:15787274-15787293 | None:intergenic | 15.0% |
| !! | AAATACGCCTAATATTTATT+TGG | + | chr8.1:15786891-15786910 | MS.gene044476:CDS | 20.0% |
| !! | AATCAATCTATATATTTGTG+AGG | - | chr8.1:15787838-15787857 | None:intergenic | 20.0% |
| !! | TCAAAAGCCAAATAAATATT+AGG | - | chr8.1:15786901-15786920 | None:intergenic | 20.0% |
| !!! | AATATTTATTTGGCTTTTGA+TGG | + | chr8.1:15786901-15786920 | MS.gene044476:CDS | 20.0% |
| !!! | AGTTTAGAGCTTATATATTA+TGG | + | chr8.1:15787147-15787166 | MS.gene044476:intron | 20.0% |
| ! | AAACAAAGCCTATTGAATAA+TGG | - | chr8.1:15787533-15787552 | None:intergenic | 25.0% |
| ! | AAATATTGAAAGGCTAAATC+AGG | + | chr8.1:15787693-15787712 | MS.gene044476:CDS | 25.0% |
| ! | AAATTCAATATCATAGGAGA+AGG | - | chr8.1:15787806-15787825 | None:intergenic | 25.0% |
| ! | AACATTCCTGTTGTATTATA+AGG | - | chr8.1:15788259-15788278 | None:intergenic | 25.0% |
| ! | AATTCAATATCATAGGAGAA+GGG | - | chr8.1:15787805-15787824 | None:intergenic | 25.0% |
| ! | ACTGGTGAATTTGTAAATAA+TGG | + | chr8.1:15787578-15787597 | MS.gene044476:intron | 25.0% |
| ! | ATACATTCTTTCTGCATTTA+AGG | - | chr8.1:15787450-15787469 | None:intergenic | 25.0% |
| ! | TACATTCTTTCTGCATTTAA+GGG | - | chr8.1:15787449-15787468 | None:intergenic | 25.0% |
| ! | TTACTCCAGAAAATATTGAA+AGG | + | chr8.1:15787683-15787702 | MS.gene044476:CDS | 25.0% |
| ! | TTCTATGAAAGTTATATACC+TGG | - | chr8.1:15787738-15787757 | None:intergenic | 25.0% |
| !!! | TATTTTCTGGAGTAATGAAA+TGG | - | chr8.1:15787678-15787697 | None:intergenic | 25.0% |
| !!! | TTTAGCCTTTCAATATTTTC+TGG | - | chr8.1:15787691-15787710 | None:intergenic | 25.0% |
| ACAAATTCACCAGTAATTCA+AGG | - | chr8.1:15787572-15787591 | None:intergenic | 30.0% | |
| AGAAACTGCACATAATTCAT+TGG | - | chr8.1:15788062-15788081 | None:intergenic | 30.0% | |
| AGAATGCGATTAATCAAATG+TGG | + | chr8.1:15787362-15787381 | MS.gene044476:intron | 30.0% | |
| AGAGAAGTCCATTATTCAAT+AGG | + | chr8.1:15787522-15787541 | MS.gene044476:intron | 30.0% | |
| GAGAAGGGAAAAAATACATA+AGG | - | chr8.1:15787790-15787809 | None:intergenic | 30.0% | |
| GAGCTTATATATTATGGAGA+CGG | + | chr8.1:15787153-15787172 | MS.gene044476:intron | 30.0% | |
| GATGGAAATACTATGAAATG+TGG | + | chr8.1:15786808-15786827 | MS.gene044476:CDS | 30.0% | |
| TGAAATGGAAGCTTCTATAA+TGG | + | chr8.1:15786786-15786805 | MS.gene044476:CDS | 30.0% | |
| ! | TCTAAAATGATTACGACAGT+AGG | - | chr8.1:15787032-15787051 | None:intergenic | 30.0% |
| ! | TTCTGCATTTAAGACATGTT+TGG | + | chr8.1:15786984-15787003 | MS.gene044476:intron | 30.0% |
| !! | CATGTTCATAAGTTGTTTTC+AGG | + | chr8.1:15787087-15787106 | MS.gene044476:intron | 30.0% |
| AAACAATCCTGAAGAGCTTA+TGG | - | chr8.1:15787119-15787138 | None:intergenic | 35.0% | |
| AACTAGTCACCTTGAATTAC+TGG | + | chr8.1:15787560-15787579 | MS.gene044476:intron | 35.0% | |
| AATATTCCACACTTCAATGC+TGG | + | chr8.1:15786730-15786749 | MS.gene044476:CDS | 35.0% | |
| AATGTCTTCAATCACGATAC+TGG | + | chr8.1:15787307-15787326 | MS.gene044476:intron | 35.0% | |
| AGTATCGTGATTGAAGACAT+TGG | - | chr8.1:15787308-15787327 | None:intergenic | 35.0% | |
| ATCAGGCAAAAGAAGCAAAT+AGG | + | chr8.1:15787710-15787729 | MS.gene044476:CDS | 35.0% | |
| ATTCAAAGGTCTCTCTCTAA+AGG | + | chr8.1:15788147-15788166 | MS.gene044476:CDS | 35.0% | |
| CAGAAGAGAGCTATTAAACA+TGG | - | chr8.1:15786651-15786670 | None:intergenic | 35.0% | |
| GCAATGCCTTATAATACAAC+AGG | + | chr8.1:15788250-15788269 | MS.gene044476:CDS | 35.0% | |
| TCAGGCAAAAGAAGCAAATA+GGG | + | chr8.1:15787711-15787730 | MS.gene044476:CDS | 35.0% | |
| TTAATCAAATGTGGCTCATG+TGG | + | chr8.1:15787371-15787390 | MS.gene044476:intron | 35.0% | |
| ! | ATGGAAGCTTCTATAATGGA+TGG | + | chr8.1:15786790-15786809 | MS.gene044476:CDS | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.1:15786931-15786950 | MS.gene044476:intron | 35.0% |
| ! | GTTATTTCCATAAGCTCTTC+AGG | + | chr8.1:15787109-15787128 | MS.gene044476:intron | 35.0% |
| ! | TTGGTAGGATCATTTTGGAT+TGG | - | chr8.1:15787869-15787888 | None:intergenic | 35.0% |
| !! | TGTGTAGCTGTTGATAGTAA+TGG | + | chr8.1:15787944-15787963 | MS.gene044476:CDS | 35.0% |
| !!! | AGGATCATTTTGGATTGGTT+GGG | - | chr8.1:15787864-15787883 | None:intergenic | 35.0% |
| !!! | ATCAAGTAGCCTTATTTTGC+AGG | + | chr8.1:15787630-15787649 | MS.gene044476:intron | 35.0% |
| !!! | TAGGATCATTTTGGATTGGT+TGG | - | chr8.1:15787865-15787884 | None:intergenic | 35.0% |
| !!! | TCAAGTAGCCTTATTTTGCA+GGG | + | chr8.1:15787631-15787650 | MS.gene044476:intron | 35.0% |
| AAAAGAAGCAAATAGGGTCC+AGG | + | chr8.1:15787717-15787736 | MS.gene044476:CDS | 40.0% | |
| AAAGGCGAAGCAATAATACG+CGG | + | chr8.1:15788091-15788110 | MS.gene044476:CDS | 40.0% | |
| AACCAAACGAGCCAAAGAAA+CGG | - | chr8.1:15786866-15786885 | None:intergenic | 40.0% | |
| ACAGAAACACCAGTTGCTAA+TGG | + | chr8.1:15787896-15787915 | MS.gene044476:CDS | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.1:15786418-15786437 | MS.gene044476:CDS | 40.0% | |
| CATCTTGTTCACTAATCCAC+CGG | - | chr8.1:15787993-15788012 | None:intergenic | 40.0% | |
| CTTTCTGCATTTAAGGGTCA+GGG | - | chr8.1:15787443-15787462 | None:intergenic | 40.0% | |
| GCTAATGGTGATAGTCAACT+CGG | + | chr8.1:15787911-15787930 | MS.gene044476:CDS | 40.0% | |
| GGTTCTGTTCTTACCAACAA+AGG | + | chr8.1:15786757-15786776 | MS.gene044476:CDS | 40.0% | |
| GTTTCTGTTTCACTCTTGGT+AGG | - | chr8.1:15787884-15787903 | None:intergenic | 40.0% | |
| TCTTTCTGCATTTAAGGGTC+AGG | - | chr8.1:15787444-15787463 | None:intergenic | 40.0% | |
| TGACTATCACCATTAGCAAC+TGG | - | chr8.1:15787908-15787927 | None:intergenic | 40.0% | |
| TGCGATGTGATCGCAATTAT+GGG | - | chr8.1:15787397-15787416 | None:intergenic | 40.0% | |
| TGTTCTTACCAACAAAGGCA+CGG | + | chr8.1:15786762-15786781 | MS.gene044476:CDS | 40.0% | |
| TTATGTGCAGTTTCTGCAAC+AGG | + | chr8.1:15788067-15788086 | MS.gene044476:CDS | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.1:15786705-15786724 | MS.gene044476:intron | 40.0% | |
| ! | AACAAGATGGTTGGTCGAAT+TGG | + | chr8.1:15788004-15788023 | MS.gene044476:CDS | 40.0% |
| ! | CACTCTTGGTAGGATCATTT+TGG | - | chr8.1:15787874-15787893 | None:intergenic | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.1:15788133-15788152 | MS.gene044476:CDS | 40.0% |
| ! | GGATTAGTGAACAAGATGGT+TGG | + | chr8.1:15787995-15788014 | MS.gene044476:CDS | 40.0% |
| ! | TGAGAGCTTTGACACCAATT+TGG | - | chr8.1:15786409-15786428 | None:intergenic | 40.0% |
| ! | TGGTGTTTCTGTTTCACTCT+TGG | - | chr8.1:15787888-15787907 | None:intergenic | 40.0% |
| ! | TGTTGTGAATGCCGTTTCTT+TGG | + | chr8.1:15786852-15786871 | MS.gene044476:CDS | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.1:15786867-15786886 | MS.gene044476:CDS | 40.0% |
| !! | TATATGTGTTGGTGTCGTGT+CGG | - | chr8.1:15786546-15786565 | None:intergenic | 40.0% |
| !!! | AAGTAGCCTTATTTTGCAGG+GGG | + | chr8.1:15787633-15787652 | MS.gene044476:intron | 40.0% |
| !!! | CAAGTAGCCTTATTTTGCAG+GGG | + | chr8.1:15787632-15787651 | MS.gene044476:intron | 40.0% |
| AAGAGATGTGGCTGCAATGA+TGG | + | chr8.1:15788123-15788142 | MS.gene044476:CDS | 45.0% | |
| AAGGCGAAGCAATAATACGC+GGG | + | chr8.1:15788092-15788111 | MS.gene044476:CDS | 45.0% | |
| AAGTGAATATGGGATGTCGC+CGG | - | chr8.1:15786339-15786358 | None:intergenic | 45.0% | |
| AAGTTCAACGACGTCTAGAG+GGG | - | chr8.1:15786444-15786463 | None:intergenic | 45.0% | |
| ACAAGTTCAACGACGTCTAG+AGG | - | chr8.1:15786446-15786465 | None:intergenic | 45.0% | |
| CAAGTTCAACGACGTCTAGA+GGG | - | chr8.1:15786445-15786464 | None:intergenic | 45.0% | |
| CATCCCATATTCACTTCCAC+CGG | + | chr8.1:15786343-15786362 | MS.gene044476:CDS | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.1:15786773-15786792 | None:intergenic | 45.0% | |
| CTAGCTTCTGCAACATCAAC+CGG | + | chr8.1:15787971-15787990 | MS.gene044476:CDS | 45.0% | |
| CTGCGATGTGATCGCAATTA+TGG | - | chr8.1:15787398-15787417 | None:intergenic | 45.0% | |
| GATAGTCAACTCGGAACTGT+TGG | + | chr8.1:15787920-15787939 | MS.gene044476:CDS | 45.0% | |
| GCACAAACACTCCACAGTTT+AGG | + | chr8.1:15786505-15786524 | MS.gene044476:intron | 45.0% | |
| GCAGTTTCTGCAACAGGTAA+AGG | + | chr8.1:15788073-15788092 | MS.gene044476:CDS | 45.0% | |
| GTTCCGGTGGAAGTGAATAT+GGG | - | chr8.1:15786349-15786368 | None:intergenic | 45.0% | |
| TACTGAAGATGGCTACTCAG+AGG | + | chr8.1:15788291-15788310 | MS.gene044476:CDS | 45.0% | |
| TATGTTCCAGCACCTATGAG+TGG | - | chr8.1:15788037-15788056 | None:intergenic | 45.0% | |
| TCTCAACCCCCTGCAAAATA+AGG | - | chr8.1:15787642-15787661 | None:intergenic | 45.0% | |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.1:15788280-15788299 | MS.gene044476:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.1:15786771-15786790 | MS.gene044476:CDS | 45.0% |
| ! | GAGCTTTGACACCAATTTGG+AGG | - | chr8.1:15786406-15786425 | None:intergenic | 45.0% |
| ! | GCTACTCAGAGGTTGCTATT+TGG | + | chr8.1:15788302-15788321 | MS.gene044476:CDS | 45.0% |
| !! | ATGAAATGTGGTGCTGTGTC+TGG | + | chr8.1:15786820-15786839 | MS.gene044476:CDS | 45.0% |
| !! | CGGTGGATTAGTGAACAAGA+TGG | + | chr8.1:15787991-15788010 | MS.gene044476:CDS | 45.0% |
| !!! | TTTGGCTTTTGATGGTGCTG+AGG | + | chr8.1:15786909-15786928 | MS.gene044476:CDS | 45.0% |
| ACCATACCAACAGTGCCCTT+TGG | - | chr8.1:15788205-15788224 | None:intergenic | 50.0% | |
| CACCAATTTGGAGGCAGTGA+CGG | - | chr8.1:15786397-15786416 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | + | chr8.1:15786736-15786755 | MS.gene044476:CDS | 50.0% | |
| CGTTCCGGTGGAAGTGAATA+TGG | - | chr8.1:15786350-15786369 | None:intergenic | 50.0% | |
| GTACATGAGCGCACACCAAA+GGG | + | chr8.1:15788187-15788206 | MS.gene044476:CDS | 50.0% | |
| GTCACTGTTCATGTCGTGTC+TGG | + | chr8.1:15786614-15786633 | MS.gene044476:intron | 50.0% | |
| TCCACAGTTTAGGCTTGTCC+CGG | + | chr8.1:15786515-15786534 | MS.gene044476:intron | 50.0% | |
| TGTACATGAGCGCACACCAA+AGG | + | chr8.1:15788186-15788205 | MS.gene044476:CDS | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | - | chr8.1:15786739-15786758 | None:intergenic | 50.0% |
| ! | GGTTGGGCAATAGCTCTACA+CGG | + | chr8.1:15786308-15786327 | MS.gene044476:CDS | 50.0% |
| ! | TGCCGTTTCTTTGGCTCGTT+TGG | + | chr8.1:15786861-15786880 | MS.gene044476:CDS | 50.0% |
| !! | ACCAAAGGGCACTGTTGGTA+TGG | + | chr8.1:15788201-15788220 | MS.gene044476:CDS | 50.0% |
| ACCGGGACAAGCCTAAACTG+TGG | - | chr8.1:15786519-15786538 | None:intergenic | 55.0% | |
| ATGGTTGCTGTGTCTGCTGC+TGG | + | chr8.1:15788220-15788239 | MS.gene044476:CDS | 55.0% | |
| ATTGGCGACACGCCACTCAT+AGG | + | chr8.1:15788022-15788041 | MS.gene044476:CDS | 55.0% | |
| CGGGACAGTAGCAAGAGATG+TGG | + | chr8.1:15788111-15788130 | MS.gene044476:CDS | 55.0% | |
| CTCCGTCACTGCCTCCAAAT+TGG | + | chr8.1:15786392-15786411 | MS.gene044476:CDS | 55.0% | |
| GAGCTTCTTCGCGTGGTTGA+CGG | - | chr8.1:15786373-15786392 | None:intergenic | 55.0% | |
| GCTTCTGCAACATCAACCGG+TGG | + | chr8.1:15787974-15787993 | MS.gene044476:CDS | 55.0% | |
| ! | TGGGCAATAGCTCTACACGG+CGG | + | chr8.1:15786311-15786330 | MS.gene044476:CDS | 55.0% |
| GACACGCCACTCATAGGTGC+TGG | + | chr8.1:15788028-15788047 | MS.gene044476:CDS | 60.0% | |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.1:15786435-15786454 | None:intergenic | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.1:15786380-15786399 | None:intergenic | 60.0% | |
| !! | CGCACACCAAAGGGCACTGT+TGG | + | chr8.1:15788196-15788215 | MS.gene044476:CDS | 60.0% |
| !! | TGGTGTCGTGTCGGTGTCAC+CGG | - | chr8.1:15786537-15786556 | None:intergenic | 60.0% |
| TCGCGTGGTTGACGGCGTTC+CGG | - | chr8.1:15786365-15786384 | None:intergenic | 65.0% | |
| ! | ATAGCTCTACACGGCGGCGC+CGG | + | chr8.1:15786317-15786336 | MS.gene044476:CDS | 65.0% |
| !! | GGTGTCGTGTCGGTGTCACC+GGG | - | chr8.1:15786536-15786555 | None:intergenic | 65.0% |
| CGTGGTTGACGGCGTTCCGG+TGG | - | chr8.1:15786362-15786381 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 15786305 | 15788345 | 15786305 | ID=MS.gene044476 |
| chr8.1 | mRNA | 15786305 | 15788345 | 15786305 | ID=MS.gene044476.t1;Parent=MS.gene044476 |
| chr8.1 | exon | 15786305 | 15786466 | 15786305 | ID=MS.gene044476.t1.exon1;Parent=MS.gene044476.t1 |
| chr8.1 | CDS | 15786305 | 15786466 | 15786305 | ID=cds.MS.gene044476.t1;Parent=MS.gene044476.t1 |
| chr8.1 | exon | 15786715 | 15786948 | 15786715 | ID=MS.gene044476.t1.exon2;Parent=MS.gene044476.t1 |
| chr8.1 | CDS | 15786715 | 15786948 | 15786715 | ID=cds.MS.gene044476.t1;Parent=MS.gene044476.t1 |
| chr8.1 | exon | 15787652 | 15787738 | 15787652 | ID=MS.gene044476.t1.exon3;Parent=MS.gene044476.t1 |
| chr8.1 | CDS | 15787652 | 15787738 | 15787652 | ID=cds.MS.gene044476.t1;Parent=MS.gene044476.t1 |
| chr8.1 | exon | 15787851 | 15788345 | 15787851 | ID=MS.gene044476.t1.exon4;Parent=MS.gene044476.t1 |
| chr8.1 | CDS | 15787851 | 15788345 | 15787851 | ID=cds.MS.gene044476.t1;Parent=MS.gene044476.t1 |
| Gene Sequence |
| Protein sequence |
