Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004992.t1 | XP_013468900.1 | 95.1 | 507 | 20 | 2 | 1 | 503 | 1 | 506 | 2.60E-250 | 874.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004992.t1 | Q5RB63 | 38.9 | 288 | 163 | 7 | 217 | 496 | 90 | 372 | 2.3e-42 | 174.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004992.t1 | A0A072VMA5 | 95.1 | 507 | 20 | 2 | 1 | 503 | 1 | 506 | 1.8e-250 | 874.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009724 | MS.gene004992 | PPI |
| MS.gene004992 | MS.gene58884 | PPI |
| MS.gene004992 | MS.gene011973 | PPI |
| MS.gene004992 | MS.gene053443 | PPI |
| MS.gene67235 | MS.gene004992 | PPI |
| MS.gene004992 | MS.gene99709 | PPI |
| MS.gene004992 | MS.gene073888 | PPI |
| MS.gene53517 | MS.gene004992 | PPI |
| MS.gene26309 | MS.gene004992 | PPI |
| MS.gene022734 | MS.gene004992 | PPI |
| MS.gene39316 | MS.gene004992 | PPI |
| MS.gene004992 | MS.gene036719 | PPI |
| MS.gene004992 | MS.gene036718 | PPI |
| MS.gene58040 | MS.gene004992 | PPI |
| MS.gene67234 | MS.gene004992 | PPI |
| MS.gene004992 | MS.gene020229 | PPI |
| MS.gene004992 | MS.gene047872 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004992.t1 | MTR_1g078210 | 96.450 | 507 | 13 | 2 | 1 | 503 | 1 | 506 | 0.0 | 992 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004992.t1 | AT5G16260 | 59.339 | 514 | 178 | 9 | 13 | 502 | 11 | 517 | 0.0 | 563 |
Find 123 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCAATTTCTGAATTA+TGG | 0.084752 | 1.4:-64068558 | MS.gene004992:CDS |
| TTCAGTTGTTTCTTCCTTTA+TGG | 0.114821 | 1.4:+64066513 | None:intergenic |
| TGACAGTTGGTTTGAATTAA+AGG | 0.162229 | 1.4:-64066266 | MS.gene004992:CDS |
| CTGGTAGCGCTTTGCCTTAT+GGG | 0.205690 | 1.4:-64066645 | MS.gene004992:CDS |
| ATTTCAGAGCATTTCTTAAA+TGG | 0.211617 | 1.4:-64068637 | MS.gene004992:intron |
| TCTGGTAGCGCTTTGCCTTA+TGG | 0.229159 | 1.4:-64066646 | MS.gene004992:CDS |
| GTCTTCAATTTCTGAATTAT+GGG | 0.244458 | 1.4:-64068557 | MS.gene004992:CDS |
| ATAAGTGGGATAAGAGTCTT+AGG | 0.253904 | 1.4:-64067937 | MS.gene004992:CDS |
| GGCTCTAGCAATCCAACTTT+TGG | 0.263833 | 1.4:-64065136 | MS.gene004992:CDS |
| AACTTCCTCTTCTTTCAAAA+AGG | 0.285902 | 1.4:+64066609 | None:intergenic |
| AAAACGATGAATTCTGAAAA+TGG | 0.309280 | 1.4:-64068926 | None:intergenic |
| TCATCCTCAGGGTGTTGTTT+TGG | 0.326001 | 1.4:-64063347 | MS.gene004992:CDS |
| AAAATGGCAAAAGGAGATTA+AGG | 0.329467 | 1.4:-64068080 | MS.gene004992:CDS |
| ACCTGCAGTTGAAGACGAAT+TGG | 0.334870 | 1.4:+64068513 | None:intergenic |
| GATGTTGGATGGTACGTTCT+TGG | 0.346116 | 1.4:-64068779 | MS.gene004992:CDS |
| ATTGTCTTTGTCAGCTTGCT+TGG | 0.355106 | 1.4:+64064887 | None:intergenic |
| CAAGTGGAAGCTTCGGAATT+CGG | 0.366910 | 1.4:-64068046 | MS.gene004992:CDS |
| AATACACATGTTTATGTCAC+TGG | 0.389054 | 1.4:-64066241 | MS.gene004992:CDS |
| CTTTCTGCTGAAATTTAGCC+AGG | 0.400350 | 1.4:+64065067 | None:intergenic |
| GGCATATAAGCGGGTTCCTC+AGG | 0.404098 | 1.4:-64067915 | MS.gene004992:intron |
| TTCGGCGGTGGTGGTGTAGT+AGG | 0.416732 | 1.4:-64068028 | MS.gene004992:CDS |
| TGTTTCTGCAACTTCCATAA+AGG | 0.417508 | 1.4:-64066527 | MS.gene004992:CDS |
| TCACCATCAGGCGGTGTTGA+AGG | 0.424907 | 1.4:+64067989 | None:intergenic |
| GCTAAGCGATTGGAGCAGTT+TGG | 0.425973 | 1.4:-64061945 | MS.gene004992:CDS |
| ACTAGAAGAAGATGTTAAAG+AGG | 0.441572 | 1.4:-64063614 | MS.gene004992:CDS |
| GTAAATTCTTCTTCACCATC+AGG | 0.442135 | 1.4:+64067977 | None:intergenic |
| ATCTTATCACCAGGTCGAAA+AGG | 0.444235 | 1.4:+64065105 | None:intergenic |
| GTTAAATTCAAGGACAGAAA+AGG | 0.445666 | 1.4:-64063325 | MS.gene004992:CDS |
| GCTTCGGAATTCGGCGGTGG+TGG | 0.446265 | 1.4:-64068037 | MS.gene004992:CDS |
| TAATTAACCATGCCACAGTC+CGG | 0.453104 | 1.4:-64061983 | MS.gene004992:CDS |
| GAAGACGAATTGGGTCTTTG+AGG | 0.461752 | 1.4:+64068523 | None:intergenic |
| AAGACGAATTGGGTCTTTGA+GGG | 0.462016 | 1.4:+64068524 | None:intergenic |
| TGATAGGAGGAGGCCACGTC+TGG | 0.466721 | 1.4:-64066664 | MS.gene004992:intron |
| ACTACCTTGACTGCATCTAT+AGG | 0.470187 | 1.4:+64063574 | None:intergenic |
| AATTAAACCATCATCTTCAC+TGG | 0.472143 | 1.4:+64062001 | None:intergenic |
| TAGCGAAGGACAACAGTTGT+TGG | 0.472530 | 1.4:+64064016 | None:intergenic |
| TGAGGCGCAAGTGGAAGCTT+CGG | 0.475916 | 1.4:-64068053 | MS.gene004992:CDS |
| GTCATCTCTTCAACCCCATA+AGG | 0.479721 | 1.4:+64066631 | None:intergenic |
| CACAATCAACCGCAACCTAC+TGG | 0.481272 | 1.4:-64068893 | MS.gene004992:intron |
| AAAGAGGAATGCACGAAGCT+TGG | 0.484045 | 1.4:-64063598 | MS.gene004992:CDS |
| CAGTAGGTTGCGGTTGATTG+TGG | 0.484700 | 1.4:+64068894 | None:intergenic |
| CCCAATTCGTCTTCAACTGC+AGG | 0.485119 | 1.4:-64068514 | MS.gene004992:intron |
| TTTAATTCAAACCAACTGTC+AGG | 0.485198 | 1.4:+64066268 | None:intergenic |
| GGTTTATTTATCAGGTTTGG+TGG | 0.486619 | 1.4:-64062038 | MS.gene004992:intron |
| CTCTATGTTGATAAAGAGAC+AGG | 0.489825 | 1.4:-64065287 | MS.gene004992:CDS |
| GGTATGTGATAATCATCCTC+AGG | 0.490183 | 1.4:-64063359 | MS.gene004992:CDS |
| AAGGCGCACCATCCAAAAGT+TGG | 0.491090 | 1.4:+64065124 | None:intergenic |
| CCTGCAGTTGAAGACGAATT+GGG | 0.493187 | 1.4:+64068514 | None:intergenic |
| GATTCCGATGTCTGTCTCCC+TGG | 0.495254 | 1.4:-64065085 | MS.gene004992:CDS |
| CAAGTATGGAATTATAAAAG+AGG | 0.501539 | 1.4:-64066096 | MS.gene004992:intron |
| TGGAAGACAAAATGCTTGGA+TGG | 0.504268 | 1.4:-64064839 | MS.gene004992:CDS |
| AATACCAGTGTGGTAGCTGT+TGG | 0.507660 | 1.4:-64066484 | MS.gene004992:CDS |
| AATTAACCATGCCACAGTCC+GGG | 0.512168 | 1.4:-64061982 | MS.gene004992:CDS |
| CTAATAAACCTCCTGACAGT+TGG | 0.516022 | 1.4:-64066279 | MS.gene004992:CDS |
| ATACCAGTGTGGTAGCTGTT+GGG | 0.517744 | 1.4:-64066483 | MS.gene004992:CDS |
| TAAGGAGGCTGAGGCGCAAG+TGG | 0.518541 | 1.4:-64068062 | MS.gene004992:CDS |
| TTCATCAATAGTAACATCCT+CGG | 0.519435 | 1.4:+64066213 | None:intergenic |
| GAAGAATTTACTGATGATGA+TGG | 0.523794 | 1.4:-64067965 | MS.gene004992:CDS |
| CAAGGACAGAAAAGGTGCTC+AGG | 0.526794 | 1.4:-64063317 | MS.gene004992:CDS |
| CAGTTTGGTGAGGAACTTGA+AGG | 0.531731 | 1.4:-64061930 | MS.gene004992:CDS |
| GGTGAAAATGTCGCAGATGT+TGG | 0.532231 | 1.4:-64068794 | MS.gene004992:CDS |
| ATATCAACCCTCATTTCAGC+AGG | 0.537601 | 1.4:+64063983 | None:intergenic |
| TGCACCTCAGAGAAGACATA+AGG | 0.541988 | 1.4:+64068734 | None:intergenic |
| GTGTGGTAGCTGTTGGGAAG+AGG | 0.542110 | 1.4:-64066477 | MS.gene004992:CDS |
| TGTTCAGTCCTGCTGAAATG+AGG | 0.543568 | 1.4:-64063991 | MS.gene004992:CDS |
| GAAGCTTCGGAATTCGGCGG+TGG | 0.544066 | 1.4:-64068040 | MS.gene004992:CDS |
| AGATAAACCAGAAGAAAAGA+AGG | 0.544575 | 1.4:-64066446 | MS.gene004992:intron |
| AGAGGAAGATGCTAAGCGAT+TGG | 0.545342 | 1.4:-64061955 | MS.gene004992:CDS |
| GGAAGACAAAATGCTTGGAT+GGG | 0.546076 | 1.4:-64064838 | MS.gene004992:CDS |
| CTGGCTAAATTTCAGCAGAA+AGG | 0.546970 | 1.4:-64065066 | MS.gene004992:intron |
| TCATCAATAGTAACATCCTC+GGG | 0.547203 | 1.4:+64066214 | None:intergenic |
| TAGCATCTTCCTCTAGATCC+CGG | 0.556991 | 1.4:+64061964 | None:intergenic |
| TGGTAGCGCTTTGCCTTATG+GGG | 0.557580 | 1.4:-64066644 | MS.gene004992:CDS |
| GAGTCTTAGGGCATATAAGC+GGG | 0.570694 | 1.4:-64067924 | MS.gene004992:CDS |
| AAGAATTTACTGATGATGAT+GGG | 0.578013 | 1.4:-64067964 | MS.gene004992:CDS |
| AAGTTGGAAGACAAAATGCT+TGG | 0.578949 | 1.4:-64064843 | MS.gene004992:CDS |
| ATGATGATGGGACATATAAG+TGG | 0.580341 | 1.4:-64067952 | MS.gene004992:CDS |
| CTAGATCCCGGACTGTGGCA+TGG | 0.581437 | 1.4:+64061976 | None:intergenic |
| TAGAATTGATGAATGGAAGA+TGG | 0.583366 | 1.4:-64063288 | MS.gene004992:intron |
| GCATCAGAATCAGTTACTAT+CGG | 0.583746 | 1.4:+64066583 | None:intergenic |
| TAGCGTGTACCAGTAGGTTG+CGG | 0.584652 | 1.4:+64068884 | None:intergenic |
| AAAGGAGATTAAGGAGGCTG+AGG | 0.585827 | 1.4:-64068071 | MS.gene004992:CDS |
| TGCATTGGTTACATATCTCA+AGG | 0.589361 | 1.4:-64065249 | MS.gene004992:intron |
| ATACACATGTTTATGTCACT+GGG | 0.589425 | 1.4:-64066240 | MS.gene004992:CDS |
| AAGCTGACAAAGACAATAGA+CGG | 0.593819 | 1.4:-64064881 | MS.gene004992:CDS |
| GCGTGCATAGAATTGATGAA+TGG | 0.595667 | 1.4:-64063295 | MS.gene004992:CDS |
| GGAGAAAATCAACAACAACT+TGG | 0.602394 | 1.4:-64068758 | MS.gene004992:CDS |
| TATGTCTTCTCTGAGGTGCA+AGG | 0.604699 | 1.4:-64068731 | MS.gene004992:intron |
| GAAGACAAAATGCTTGGATG+GGG | 0.605978 | 1.4:-64064837 | MS.gene004992:intron |
| GCGATTGGAGCAGTTTGGTG+AGG | 0.606680 | 1.4:-64061940 | MS.gene004992:CDS |
| AGGCAAAGCGCTACCAGACG+TGG | 0.611672 | 1.4:+64066651 | None:intergenic |
| AATTCAGAAATTGAAGACAA+AGG | 0.617573 | 1.4:+64068562 | None:intergenic |
| TGGATTGCTAGAGCCACTGA+TGG | 0.618240 | 1.4:+64065144 | None:intergenic |
| AGACCTTCAACACCGCCTGA+TGG | 0.618261 | 1.4:-64067992 | MS.gene004992:CDS |
| TTATGCTGAGGCTGAAGATG+TGG | 0.619425 | 1.4:-64068113 | MS.gene004992:CDS |
| TGGACCTATAGATGCAGTCA+AGG | 0.623091 | 1.4:-64063578 | MS.gene004992:intron |
| TTGTTATGTAGTTTATGCTG+AGG | 0.623808 | 1.4:-64068125 | MS.gene004992:intron |
| ATACATGCCAGTGAAGATGA+TGG | 0.624024 | 1.4:-64062008 | MS.gene004992:CDS |
| TTCCTCTAGATCCCGGACTG+TGG | 0.624191 | 1.4:+64061971 | None:intergenic |
| GACATCGGAATCTTATCACC+AGG | 0.625827 | 1.4:+64065096 | None:intergenic |
| TGCCACAGTCCGGGATCTAG+AGG | 0.625882 | 1.4:-64061973 | MS.gene004992:CDS |
| TGGTCCTTATGTCTTCTCTG+AGG | 0.627862 | 1.4:-64068738 | MS.gene004992:CDS |
| ATCAACATAGAGCTTAACAC+GGG | 0.630935 | 1.4:+64065298 | None:intergenic |
| AATTCAAACCAACTGTCAGG+AGG | 0.631486 | 1.4:+64066271 | None:intergenic |
| GTTCAGTCCTGCTGAAATGA+GGG | 0.634321 | 1.4:-64063990 | MS.gene004992:intron |
| AGAGTCTTAGGGCATATAAG+CGG | 0.635019 | 1.4:-64067925 | MS.gene004992:CDS |
| TGTATATCAGGAACCATCAG+TGG | 0.638535 | 1.4:-64065157 | MS.gene004992:intron |
| AAAATGTCGCAGATGTTGGA+TGG | 0.645277 | 1.4:-64068790 | MS.gene004992:CDS |
| TAAGTGGGATAAGAGTCTTA+GGG | 0.645357 | 1.4:-64067936 | MS.gene004992:CDS |
| TTTCTGCTGAAATTTAGCCA+GGG | 0.652648 | 1.4:+64065068 | None:intergenic |
| CTTCCCAACAGCTACCACAC+TGG | 0.656887 | 1.4:+64066480 | None:intergenic |
| CAGGACTGAACATATAGCGA+AGG | 0.659719 | 1.4:+64064002 | None:intergenic |
| GTATGTGATAATCATCCTCA+GGG | 0.661661 | 1.4:-64063358 | MS.gene004992:CDS |
| GGTCTGAAGGAAGAACTGAA+TGG | 0.672653 | 1.4:-64068588 | MS.gene004992:CDS |
| TTATGTCACTGGGTTGCCCG+AGG | 0.676437 | 1.4:-64066230 | MS.gene004992:CDS |
| TTAGCCAGGGAGACAGACAT+CGG | 0.680304 | 1.4:+64065081 | None:intergenic |
| ATGGCAAAAGGAGATTAAGG+AGG | 0.680476 | 1.4:-64068077 | MS.gene004992:CDS |
| AATTCTTCTTCACCATCAGG+CGG | 0.682237 | 1.4:+64067980 | None:intergenic |
| TATCAACATAGAGCTTAACA+CGG | 0.691544 | 1.4:+64065297 | None:intergenic |
| GTGGAAGCTTCGGAATTCGG+CGG | 0.702552 | 1.4:-64068043 | MS.gene004992:CDS |
| TGATGATGGGACATATAAGT+GGG | 0.715635 | 1.4:-64067951 | MS.gene004992:CDS |
| TTAACCAAAACAACACCCTG+AGG | 0.735800 | 1.4:+64063343 | None:intergenic |
| TCAACATAGAGCTTAACACG+GGG | 0.786913 | 1.4:+64065299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 64061923 | 64068942 | 64061923 | ID=MS.gene004992 |
| chr1.4 | mRNA | 64061923 | 64068942 | 64061923 | ID=MS.gene004992.t1;Parent=MS.gene004992 |
| chr1.4 | exon | 64068894 | 64068942 | 64068894 | ID=MS.gene004992.t1.exon1;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64068894 | 64068942 | 64068894 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64068732 | 64068815 | 64068732 | ID=MS.gene004992.t1.exon2;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64068732 | 64068815 | 64068732 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64068515 | 64068652 | 64068515 | ID=MS.gene004992.t1.exon3;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64068515 | 64068652 | 64068515 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64067916 | 64068136 | 64067916 | ID=MS.gene004992.t1.exon4;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64067916 | 64068136 | 64067916 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64066447 | 64066680 | 64066447 | ID=MS.gene004992.t1.exon5;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64066447 | 64066680 | 64066447 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64066213 | 64066305 | 64066213 | ID=MS.gene004992.t1.exon6;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64066213 | 64066305 | 64066213 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64066097 | 64066135 | 64066097 | ID=MS.gene004992.t1.exon7;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64066097 | 64066135 | 64066097 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64065250 | 64065339 | 64065250 | ID=MS.gene004992.t1.exon8;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64065250 | 64065339 | 64065250 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64065067 | 64065169 | 64065067 | ID=MS.gene004992.t1.exon9;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64065067 | 64065169 | 64065067 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64064838 | 64064924 | 64064838 | ID=MS.gene004992.t1.exon10;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64064838 | 64064924 | 64064838 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64063991 | 64064067 | 64063991 | ID=MS.gene004992.t1.exon11;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64063991 | 64064067 | 64063991 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64063579 | 64063659 | 64063579 | ID=MS.gene004992.t1.exon12;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64063579 | 64063659 | 64063579 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64063289 | 64063380 | 64063289 | ID=MS.gene004992.t1.exon13;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64063289 | 64063380 | 64063289 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| chr1.4 | exon | 64061923 | 64062046 | 64061923 | ID=MS.gene004992.t1.exon14;Parent=MS.gene004992.t1 |
| chr1.4 | CDS | 64061923 | 64062046 | 64061923 | ID=cds.MS.gene004992.t1;Parent=MS.gene004992.t1 |
| Gene Sequence |
| Protein sequence |