Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009724.t1 | XP_003615951.1 | 99.1 | 233 | 2 | 0 | 1 | 233 | 1 | 233 | 3.50E-101 | 377.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009724.t1 | O22922 | 76.9 | 234 | 51 | 2 | 1 | 233 | 1 | 232 | 2.0e-81 | 303.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009724.t1 | G7K5T4 | 99.1 | 233 | 2 | 0 | 1 | 233 | 1 | 233 | 2.5e-101 | 377.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009724.t1 | MTR_5g074430 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.71e-173 | 476 |
| MS.gene009724.t1 | MTR_5g074430 | 97.863 | 234 | 4 | 1 | 1 | 233 | 1 | 234 | 1.15e-171 | 471 |
| MS.gene009724.t1 | MTR_1g055405 | 94.382 | 178 | 8 | 2 | 57 | 233 | 103 | 279 | 5.37e-108 | 312 |
| MS.gene009724.t1 | MTR_4g084990 | 61.864 | 236 | 80 | 3 | 7 | 233 | 11 | 245 | 1.30e-100 | 292 |
| MS.gene009724.t1 | MTR_4g084990 | 60.256 | 234 | 86 | 2 | 7 | 233 | 11 | 244 | 1.04e-99 | 290 |
| MS.gene009724.t1 | MTR_7g108715 | 57.500 | 160 | 58 | 3 | 83 | 233 | 3 | 161 | 3.89e-56 | 176 |
| MS.gene009724.t1 | MTR_4g084990 | 56.204 | 137 | 60 | 0 | 7 | 143 | 11 | 147 | 8.24e-53 | 169 |
| MS.gene009724.t1 | MTR_3g072860 | 84.810 | 79 | 12 | 0 | 46 | 124 | 62 | 140 | 5.09e-30 | 109 |
| MS.gene009724.t1 | MTR_7g108725 | 64.615 | 65 | 23 | 0 | 7 | 71 | 11 | 75 | 2.18e-25 | 95.9 |
| MS.gene009724.t1 | MTR_4g085040 | 64.615 | 65 | 23 | 0 | 9 | 73 | 13 | 77 | 7.26e-23 | 91.3 |
| MS.gene009724.t1 | MTR_4g085000 | 63.333 | 60 | 22 | 0 | 5 | 64 | 9 | 68 | 1.80e-21 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009724.t1 | AT2G30260 | 69.915 | 236 | 64 | 3 | 1 | 233 | 1 | 232 | 6.58e-124 | 351 |
| MS.gene009724.t1 | AT1G06960 | 72.961 | 233 | 59 | 2 | 1 | 233 | 1 | 229 | 6.23e-122 | 346 |
| MS.gene009724.t1 | AT1G06960 | 70.707 | 198 | 54 | 2 | 36 | 233 | 7 | 200 | 1.45e-96 | 280 |
| MS.gene009724.t1 | AT2G47580 | 56.904 | 239 | 92 | 4 | 5 | 233 | 13 | 250 | 6.09e-87 | 258 |
| MS.gene009724.t1 | AT2G30260 | 68.919 | 148 | 41 | 1 | 1 | 148 | 1 | 143 | 5.74e-72 | 217 |
| MS.gene009724.t1 | AT1G06960 | 74.825 | 143 | 34 | 1 | 1 | 143 | 1 | 141 | 1.93e-70 | 213 |
| MS.gene009724.t1 | AT1G06960 | 82.524 | 103 | 18 | 0 | 1 | 103 | 1 | 103 | 8.16e-63 | 192 |
| MS.gene009724.t1 | AT1G06960 | 66.887 | 151 | 46 | 2 | 83 | 233 | 4 | 150 | 4.87e-62 | 191 |
| MS.gene009724.t1 | AT1G06960 | 75.510 | 98 | 24 | 0 | 36 | 133 | 7 | 104 | 4.87e-45 | 147 |
Find 53 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATGGAAGGATTT+TGG | 0.143011 | 5.3:-58923406 | MS.gene009724:CDS |
| ATTGAGATTCTTAATGTAAA+TGG | 0.200962 | 5.3:+58925423 | None:intergenic |
| CATCTGTCGCACTGCATTAC+TGG | 0.268948 | 5.3:+58923314 | None:intergenic |
| TATTGCTTATTCTCTCAATA+TGG | 0.294966 | 5.3:-58923417 | MS.gene009724:CDS |
| AAACCAGAGAGGATGCTTTC+AGG | 0.319590 | 5.3:-58925466 | None:intergenic |
| TTAATGTAAATGGTTTGATT+TGG | 0.322185 | 5.3:+58925433 | None:intergenic |
| CTTAGCAAAGTTTATAATCA+TGG | 0.324640 | 5.3:+58920014 | None:intergenic |
| GCCTCTTGGGCACCGGACCC+TGG | 0.364979 | 5.3:+58920249 | None:intergenic |
| CTCTATGAACAAAATATTGT+TGG | 0.365120 | 5.3:+58920218 | None:intergenic |
| TGTTGGGAGCAGCTGCCTCT+TGG | 0.368601 | 5.3:+58920235 | None:intergenic |
| GTTGGGAGCAGCTGCCTCTT+GGG | 0.371933 | 5.3:+58920236 | None:intergenic |
| GCACCATGTGTTCCACCATT+AGG | 0.384777 | 5.3:+58920784 | None:intergenic |
| GCCTCATTCCGTCCAGGGTC+CGG | 0.398715 | 5.3:-58920261 | MS.gene009724:CDS |
| ATGTAAATGGTTTGATTTGG+AGG | 0.406769 | 5.3:+58925436 | None:intergenic |
| AAACAATCTTCTGTGCCTAA+TGG | 0.424244 | 5.3:-58920799 | MS.gene009724:CDS |
| AACCAGAGAGGATGCTTTCA+GGG | 0.433914 | 5.3:-58925465 | None:intergenic |
| AGCAGCTGCCTCTTGGGCAC+CGG | 0.444275 | 5.3:+58920242 | None:intergenic |
| ACAATCATCCATGGCAATGC+AGG | 0.453318 | 5.3:-58920070 | MS.gene009724:CDS |
| TCTATGAACAAAATATTGTT+GGG | 0.458630 | 5.3:+58920219 | None:intergenic |
| GACGCCTAAGCTTCGAGGAC+AGG | 0.460104 | 5.3:-58923367 | MS.gene009724:CDS |
| AGAGGGAAGCTTTGTTCCAA+GGG | 0.460175 | 5.3:-58922715 | MS.gene009724:CDS |
| CGCTTGATCGAAGCAAAGCC+AGG | 0.463784 | 5.3:-58920123 | MS.gene009724:CDS |
| TTAGCAAAGTTTATAATCAT+GGG | 0.465775 | 5.3:+58920015 | None:intergenic |
| CATGCCTGTCCTCGAAGCTT+AGG | 0.475388 | 5.3:+58923363 | None:intergenic |
| ACCGGACCCTGGACGGAATG+AGG | 0.501996 | 5.3:+58920260 | None:intergenic |
| AAGCGCACTTCCTTAAAACC+TGG | 0.502688 | 5.3:+58920141 | None:intergenic |
| CAGCAGGCCTCATTCCGTCC+AGG | 0.503368 | 5.3:-58920267 | MS.gene009724:intron |
| CTAAAGACGCCTAAGCTTCG+AGG | 0.510089 | 5.3:-58923372 | MS.gene009724:CDS |
| AAGAGGGAAGCTTTGTTCCA+AGG | 0.510421 | 5.3:-58922716 | MS.gene009724:CDS |
| ATCCTGCCGGTAGTTTCATA+AGG | 0.510992 | 5.3:+58920189 | None:intergenic |
| CTTGGGCACCGGACCCTGGA+CGG | 0.524347 | 5.3:+58920253 | None:intergenic |
| GCTTATTCTCTCAATATGGA+AGG | 0.527328 | 5.3:-58923413 | MS.gene009724:CDS |
| AAATCTACAAATGCGATACC+TGG | 0.531054 | 5.3:+58920105 | None:intergenic |
| TCCAGGGTCCGGTGCCCAAG+AGG | 0.546064 | 5.3:-58920250 | MS.gene009724:CDS |
| AGCAGGCCTCATTCCGTCCA+GGG | 0.559600 | 5.3:-58920266 | MS.gene009724:intron |
| CAATCTTCTGTGCCTAATGG+TGG | 0.560473 | 5.3:-58920796 | MS.gene009724:CDS |
| TGCCTTATGAAACTACCGGC+AGG | 0.562261 | 5.3:-58920191 | MS.gene009724:CDS |
| ATGGCAATGCAGGCTCTACA+AGG | 0.563519 | 5.3:-58920060 | MS.gene009724:CDS |
| TAAGCTTCGAGGACAGGCAT+GGG | 0.574433 | 5.3:-58923361 | MS.gene009724:CDS |
| CTAAGCTTCGAGGACAGGCA+TGG | 0.581122 | 5.3:-58923362 | MS.gene009724:CDS |
| GATTGTATTGCTAAAGAAGA+GGG | 0.592319 | 5.3:-58922732 | MS.gene009724:CDS |
| GAGCATTTCGAGCATCCTGC+CGG | 0.593424 | 5.3:+58920176 | None:intergenic |
| TTGTAGAGCCTGCATTGCCA+TGG | 0.596181 | 5.3:+58920062 | None:intergenic |
| AGCGCACTTCCTTAAAACCT+GGG | 0.597463 | 5.3:+58920142 | None:intergenic |
| GTGCCTAATGGTGGAACACA+TGG | 0.600600 | 5.3:-58920787 | MS.gene009724:CDS |
| ATGCTCTTCGAACAATACCC+AGG | 0.603681 | 5.3:-58920159 | MS.gene009724:CDS |
| AGATGAGGCACAATCATCCA+TGG | 0.621792 | 5.3:-58920079 | MS.gene009724:CDS |
| AATTTGCCTTATGAAACTAC+CGG | 0.623907 | 5.3:-58920195 | MS.gene009724:CDS |
| AATGAAAAGATCAAGAAAGA+CGG | 0.624809 | 5.3:-58925403 | MS.gene009724:intron |
| GGAACACATGGTGCAAGTAA+TGG | 0.626001 | 5.3:-58920775 | MS.gene009724:CDS |
| AGATTGTATTGCTAAAGAAG+AGG | 0.631624 | 5.3:-58922733 | MS.gene009724:CDS |
| ACCAGAGAGGATGCTTTCAG+GGG | 0.636302 | 5.3:-58925464 | None:intergenic |
| ACACATGGTGCAAGTAATGG+TGG | 0.721642 | 5.3:-58920772 | MS.gene009724:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTAAATATTTATACATA+AGG | + | chr5.3:58921276-58921295 | None:intergenic | 10.0% |
| !!! | AAAATTTAGTTTAATTTAAC+TGG | - | chr5.3:58920352-58920371 | MS.gene009724:intron | 10.0% |
| !!! | AAATTTAGTTTAATTTAACT+GGG | - | chr5.3:58920353-58920372 | MS.gene009724:intron | 10.0% |
| !!! | TGTATATACTTTATATTTTA+AGG | - | chr5.3:58924120-58924139 | MS.gene009724:intron | 10.0% |
| !! | AAATAATAATTCAAAAAGTG+AGG | + | chr5.3:58922843-58922862 | None:intergenic | 15.0% |
| !! | AAATTAATGTTTAGTACAAA+AGG | + | chr5.3:58923464-58923483 | None:intergenic | 15.0% |
| !! | ATATAACAGATCATATATAT+AGG | - | chr5.3:58921086-58921105 | MS.gene009724:intron | 15.0% |
| !! | ATGATATATCAAATAATTCT+TGG | + | chr5.3:58921301-58921320 | None:intergenic | 15.0% |
| !! | CAAAAATGATAGAAAATATT+AGG | - | chr5.3:58922990-58923009 | MS.gene009724:intron | 15.0% |
| !! | TAAAAAGTTAATGAAAATTG+TGG | - | chr5.3:58920875-58920894 | MS.gene009724:intron | 15.0% |
| !! | TAATAATCAACATAGATTAA+AGG | + | chr5.3:58924730-58924749 | None:intergenic | 15.0% |
| !! | TAGAAAAGTAAGAAAAAAAT+GGG | + | chr5.3:58920111-58920130 | None:intergenic | 15.0% |
| !! | TATAACAGATCATATATATA+GGG | - | chr5.3:58921087-58921106 | MS.gene009724:intron | 15.0% |
| !!! | CACTTTTTGAATTATTATTT+GGG | - | chr5.3:58922843-58922862 | MS.gene009724:intron | 15.0% |
| !!! | CTAATATTTTCTATCATTTT+TGG | + | chr5.3:58922992-58923011 | None:intergenic | 15.0% |
| !!! | TCACTTTTTGAATTATTATT+TGG | - | chr5.3:58922842-58922861 | MS.gene009724:intron | 15.0% |
| !!! | TGTTTTTTGTTGAATTATTA+GGG | - | chr5.3:58920251-58920270 | MS.gene009724:CDS | 15.0% |
| !! | ATAAATCATGTACACAAAAT+AGG | + | chr5.3:58924021-58924040 | None:intergenic | 20.0% |
| !! | ATACAAGTCCAATATATATA+TGG | + | chr5.3:58921848-58921867 | None:intergenic | 20.0% |
| !! | ATATATATATTGGACTTGTA+TGG | - | chr5.3:58921847-58921866 | MS.gene009724:intron | 20.0% |
| !! | ATATATCATTGTCATATGTA+CGG | - | chr5.3:58921312-58921331 | MS.gene009724:intron | 20.0% |
| !! | ATTGAGATTCTTAATGTAAA+TGG | + | chr5.3:58920042-58920061 | None:intergenic | 20.0% |
| !! | ATTTAACAAAATTAGAGAAG+AGG | + | chr5.3:58923649-58923668 | None:intergenic | 20.0% |
| !! | GTAGAAAAGTAAGAAAAAAA+TGG | + | chr5.3:58920112-58920131 | None:intergenic | 20.0% |
| !! | TAATATAACCAACAATAGAT+TGG | + | chr5.3:58920701-58920720 | None:intergenic | 20.0% |
| !! | TACAAGTCCAATATATATAT+GGG | + | chr5.3:58921847-58921866 | None:intergenic | 20.0% |
| !! | TCTATGAACAAAATATTGTT+GGG | + | chr5.3:58925246-58925265 | None:intergenic | 20.0% |
| !! | TGTATTACAAAATTCAATGT+TGG | - | chr5.3:58921227-58921246 | MS.gene009724:intron | 20.0% |
| !! | TGTTAAACGTTGTTAAATAA+CGG | - | chr5.3:58924806-58924825 | MS.gene009724:intron | 20.0% |
| !! | TTAATGTAAATGGTTTGATT+TGG | + | chr5.3:58920032-58920051 | None:intergenic | 20.0% |
| !! | TTAGCAAAGTTTATAATCAT+GGG | + | chr5.3:58925450-58925469 | None:intergenic | 20.0% |
| !!! | AAATTCATTATTTTGCAATG+TGG | - | chr5.3:58923905-58923924 | MS.gene009724:intron | 20.0% |
| !!! | AATAAGAACCTTTAATTTGA+TGG | - | chr5.3:58920911-58920930 | MS.gene009724:intron | 20.0% |
| !!! | ATATTATGTTTAGCTTTCTT+TGG | - | chr5.3:58922492-58922511 | MS.gene009724:intron | 20.0% |
| !!! | ATCATTGTATAACTTTTTAC+CGG | + | chr5.3:58921124-58921143 | None:intergenic | 20.0% |
| !!! | GCTTTTATGTATTATTCATA+AGG | - | chr5.3:58920441-58920460 | MS.gene009724:intron | 20.0% |
| !!! | GTGTTTTTTGTTGAATTATT+AGG | - | chr5.3:58920250-58920269 | MS.gene009724:CDS | 20.0% |
| !!! | TATGGTTAGAAATTTTAACT+GGG | - | chr5.3:58920224-58920243 | MS.gene009724:CDS | 20.0% |
| !!! | TTATGGTTAGAAATTTTAAC+TGG | - | chr5.3:58920223-58920242 | MS.gene009724:CDS | 20.0% |
| !!! | TTCTCTAATTTTGTTAAATG+TGG | - | chr5.3:58923650-58923669 | MS.gene009724:intron | 20.0% |
| !!! | TTGCTTTTTACTACTTTTTT+AGG | - | chr5.3:58920139-58920158 | MS.gene009724:CDS | 20.0% |
| ! | AAAAATAAGCCAATCCAAAT+GGG | - | chr5.3:58920581-58920600 | MS.gene009724:intron | 25.0% |
| ! | AATGAAAAGATCAAGAAAGA+CGG | - | chr5.3:58920059-58920078 | MS.gene009724:CDS | 25.0% |
| ! | ACAAGTCCAATATATATATG+GGG | + | chr5.3:58921846-58921865 | None:intergenic | 25.0% |
| ! | AGTATATCAGTGTAATACAT+GGG | - | chr5.3:58921166-58921185 | MS.gene009724:intron | 25.0% |
| ! | ATAATCCCTAATTTGAATGA+GGG | + | chr5.3:58924418-58924437 | None:intergenic | 25.0% |
| ! | ATATAACAGATCCTATATGT+AGG | - | chr5.3:58921142-58921161 | MS.gene009724:intron | 25.0% |
| ! | ATATGTTTCAATTTAACTCG+TGG | - | chr5.3:58925089-58925108 | MS.gene009724:intron | 25.0% |
| ! | ATTGAGAGTAATATAAGAAG+AGG | - | chr5.3:58923167-58923186 | MS.gene009724:intron | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr5.3:58920402-58920421 | None:intergenic | 25.0% |
| ! | CAATTCAACCATCAAATTAA+AGG | + | chr5.3:58920922-58920941 | None:intergenic | 25.0% |
| ! | CAATTCACAACACTAAAATT+GGG | - | chr5.3:58924991-58925010 | MS.gene009724:intron | 25.0% |
| ! | CAGTATAACTTTAATACCAT+AGG | + | chr5.3:58922198-58922217 | None:intergenic | 25.0% |
| ! | CTCTATGAACAAAATATTGT+TGG | + | chr5.3:58925247-58925266 | None:intergenic | 25.0% |
| ! | CTTAGCAAAGTTTATAATCA+TGG | + | chr5.3:58925451-58925470 | None:intergenic | 25.0% |
| ! | GAAAAAAATGGGAATGTAAA+CGG | + | chr5.3:58920100-58920119 | None:intergenic | 25.0% |
| ! | GAATTCTTGGTTAAACATTA+TGG | - | chr5.3:58922392-58922411 | MS.gene009724:intron | 25.0% |
| ! | GCTTATTATGTATGAGAAAA+GGG | - | chr5.3:58920603-58920622 | MS.gene009724:intron | 25.0% |
| ! | GGTTGAATTGATGAAATTAA+GGG | - | chr5.3:58920932-58920951 | MS.gene009724:intron | 25.0% |
| ! | GTACACAAATTAACAGATAT+AGG | + | chr5.3:58922221-58922240 | None:intergenic | 25.0% |
| ! | TAAAAATAAGCCAATCCAAA+TGG | - | chr5.3:58920580-58920599 | MS.gene009724:intron | 25.0% |
| ! | TAATTTCTCTTAATGTCCAT+TGG | - | chr5.3:58922323-58922342 | MS.gene009724:intron | 25.0% |
| ! | TACAAAATTCAATGTTGGAT+GGG | - | chr5.3:58921232-58921251 | MS.gene009724:intron | 25.0% |
| ! | TACGTAATATTGTGAAATAG+CGG | - | chr5.3:58924903-58924922 | MS.gene009724:intron | 25.0% |
| ! | TATAACAGATCCTATATGTA+GGG | - | chr5.3:58921143-58921162 | MS.gene009724:intron | 25.0% |
| ! | TATATCATTGTCATATGTAC+GGG | - | chr5.3:58921313-58921332 | MS.gene009724:intron | 25.0% |
| ! | TATTAGAGAAACTATCAAGA+AGG | - | chr5.3:58921614-58921633 | MS.gene009724:intron | 25.0% |
| ! | TATTATTCATAAGGTTGTCA+AGG | - | chr5.3:58920450-58920469 | MS.gene009724:intron | 25.0% |
| ! | TATTGCTTATTCTCTCAATA+TGG | - | chr5.3:58922045-58922064 | MS.gene009724:intron | 25.0% |
| ! | TGGTTGAATTGATGAAATTA+AGG | - | chr5.3:58920931-58920950 | MS.gene009724:intron | 25.0% |
| ! | TTACAAAATTCAATGTTGGA+TGG | - | chr5.3:58921231-58921250 | MS.gene009724:intron | 25.0% |
| ! | TTCAAAGGGATAAATGATAA+TGG | + | chr5.3:58922888-58922907 | None:intergenic | 25.0% |
| ! | TTCTAATGAATGACTAGTAT+TGG | + | chr5.3:58922969-58922988 | None:intergenic | 25.0% |
| ! | TTGAGAGTAATATAAGAAGA+GGG | - | chr5.3:58923168-58923187 | MS.gene009724:intron | 25.0% |
| !! | ACCATAGGTTTTTCATAAAA+TGG | + | chr5.3:58922183-58922202 | None:intergenic | 25.0% |
| !! | ATCATTGCATAACTTTTTAC+CGG | + | chr5.3:58921068-58921087 | None:intergenic | 25.0% |
| !! | CCATAGGTTTTTCATAAAAT+GGG | + | chr5.3:58922182-58922201 | None:intergenic | 25.0% |
| !! | CGTTAGTTTCTTTATTGAAT+TGG | - | chr5.3:58924564-58924583 | MS.gene009724:intron | 25.0% |
| !! | GTTTCTCTAATAGTTTTTGT+AGG | + | chr5.3:58921606-58921625 | None:intergenic | 25.0% |
| !! | TTATAATCATGGGATTTTGA+GGG | + | chr5.3:58925440-58925459 | None:intergenic | 25.0% |
| !! | TTCTAATGCTGAATGTTTTT+AGG | - | chr5.3:58920318-58920337 | MS.gene009724:intron | 25.0% |
| !! | TTGAATTATTAGGGTAGTTT+TGG | - | chr5.3:58920260-58920279 | MS.gene009724:CDS | 25.0% |
| !! | TTTATAATCATGGGATTTTG+AGG | + | chr5.3:58925441-58925460 | None:intergenic | 25.0% |
| !! | TTTCTACCATCTTTTCTAAT+AGG | + | chr5.3:58921483-58921502 | None:intergenic | 25.0% |
| !!! | ACTACTTTTTTAGGTTTCAA+CGG | - | chr5.3:58920148-58920167 | MS.gene009724:CDS | 25.0% |
| !!! | ATTTGTAGATTTTGAAGATG+AGG | - | chr5.3:58925368-58925387 | MS.gene009724:intron | 25.0% |
| !!! | TCGTTGAATAACTTTTTTAC+TGG | - | chr5.3:58921199-58921218 | MS.gene009724:intron | 25.0% |
| AAAAAGAAACAAGAGGAGAA+AGG | - | chr5.3:58922775-58922794 | MS.gene009724:intron | 30.0% | |
| AAAACGTGATAAAACACAAC+AGG | + | chr5.3:58922256-58922275 | None:intergenic | 30.0% | |
| AAACTCCCTCATTCAAATTA+GGG | - | chr5.3:58924410-58924429 | MS.gene009724:intron | 30.0% | |
| AAATGTACTCTTATATCAGC+AGG | - | chr5.3:58925179-58925198 | MS.gene009724:intron | 30.0% | |
| AACTTGCAAACAAAGACTAA+AGG | + | chr5.3:58923030-58923049 | None:intergenic | 30.0% | |
| AAGAATGAGAATGAAAGATG+TGG | - | chr5.3:58922554-58922573 | MS.gene009724:intron | 30.0% | |
| AATTTGCCTTATGAAACTAC+CGG | - | chr5.3:58925267-58925286 | MS.gene009724:intron | 30.0% | |
| AGATTGTATTGCTAAAGAAG+AGG | - | chr5.3:58922729-58922748 | MS.gene009724:CDS | 30.0% | |
| AGTAATATAAGAAGAGGGAA+AGG | - | chr5.3:58923173-58923192 | MS.gene009724:intron | 30.0% | |
| ATATTGTGAAATAGCGGTTA+TGG | - | chr5.3:58924909-58924928 | MS.gene009724:intron | 30.0% | |
| GAAATGACAACATTAGAGAA+AGG | - | chr5.3:58921447-58921466 | MS.gene009724:intron | 30.0% | |
| GAGTATATCAGTGTAATACA+TGG | - | chr5.3:58921165-58921184 | MS.gene009724:intron | 30.0% | |
| GATAATCCCTAATTTGAATG+AGG | + | chr5.3:58924419-58924438 | None:intergenic | 30.0% | |
| GATTGTATTGCTAAAGAAGA+GGG | - | chr5.3:58922730-58922749 | MS.gene009724:CDS | 30.0% | |
| GCAATTCACAACACTAAAAT+TGG | - | chr5.3:58924990-58925009 | MS.gene009724:intron | 30.0% | |
| GGCTTATTATGTATGAGAAA+AGG | - | chr5.3:58920602-58920621 | MS.gene009724:intron | 30.0% | |
| TAAACTCCCTCATTCAAATT+AGG | - | chr5.3:58924409-58924428 | MS.gene009724:intron | 30.0% | |
| TAACCAAGAATTCTTACAAG+CGG | + | chr5.3:58922385-58922404 | None:intergenic | 30.0% | |
| TCAAAAAGTGAGGATGATTA+TGG | + | chr5.3:58922833-58922852 | None:intergenic | 30.0% | |
| TCATACATAATAAGCCCATT+TGG | + | chr5.3:58920598-58920617 | None:intergenic | 30.0% | |
| TCTCTACTCAACAAATTATG+AGG | + | chr5.3:58923604-58923623 | None:intergenic | 30.0% | |
| TGGGTTAACTTAATAAGGTT+GGG | + | chr5.3:58923854-58923873 | None:intergenic | 30.0% | |
| TTAATCTTGACGTATGATAG+AGG | - | chr5.3:58921813-58921832 | MS.gene009724:intron | 30.0% | |
| TTGAATTGCCAATCTATTGT+TGG | - | chr5.3:58920690-58920709 | MS.gene009724:intron | 30.0% | |
| TTTGCAAGTTAGGAGATAAA+GGG | - | chr5.3:58923040-58923059 | MS.gene009724:intron | 30.0% | |
| ! | AATAGCAGTTTGTTCAAACT+CGG | + | chr5.3:58924959-58924978 | None:intergenic | 30.0% |
| ! | CAAAATTAGAGAAGAGGTAT+AGG | + | chr5.3:58923643-58923662 | None:intergenic | 30.0% |
| ! | CCCATTTTATGAAAAACCTA+TGG | - | chr5.3:58922179-58922198 | MS.gene009724:intron | 30.0% |
| ! | TATAATCATGGGATTTTGAG+GGG | + | chr5.3:58925439-58925458 | None:intergenic | 30.0% |
| ! | TATCATTTATCCCTTTGAAG+TGG | - | chr5.3:58922889-58922908 | MS.gene009724:intron | 30.0% |
| ! | TTAGTCTTTGTTTGCAAGTT+AGG | - | chr5.3:58923030-58923049 | MS.gene009724:intron | 30.0% |
| ! | TTGCTCTTGATTTTCCATTT+CGG | - | chr5.3:58921873-58921892 | MS.gene009724:intron | 30.0% |
| ! | TTGTTTTCGTATGAAGTTAC+GGG | - | chr5.3:58922609-58922628 | MS.gene009724:intron | 30.0% |
| ! | TTTCAGAAGCATATCATTGA+TGG | + | chr5.3:58922657-58922676 | None:intergenic | 30.0% |
| ! | TTTTGAGCTAACCTATCATT+AGG | - | chr5.3:58923684-58923703 | MS.gene009724:intron | 30.0% |
| !! | ACTAGTGGGTTAACTTAATA+AGG | + | chr5.3:58923859-58923878 | None:intergenic | 30.0% |
| !! | ATATAGGGAGTATCTATATC+CGG | - | chr5.3:58921102-58921121 | MS.gene009724:intron | 30.0% |
| !! | ATGTAAATGGTTTGATTTGG+AGG | + | chr5.3:58920029-58920048 | None:intergenic | 30.0% |
| !! | CTTGTTTTCGTATGAAGTTA+CGG | - | chr5.3:58922608-58922627 | MS.gene009724:intron | 30.0% |
| !! | TTATTTTATGAAGTCTCGCA+TGG | - | chr5.3:58920849-58920868 | MS.gene009724:intron | 30.0% |
| !! | TTGGTTCTGATTGGTTTATT+TGG | - | chr5.3:58923809-58923828 | MS.gene009724:intron | 30.0% |
| !! | TTTGAAATCTTTTGTCCTGT+TGG | - | chr5.3:58922515-58922534 | MS.gene009724:intron | 30.0% |
| !!! | GTAATTGGATTTTGTTTTGC+TGG | - | chr5.3:58921905-58921924 | MS.gene009724:intron | 30.0% |
| AAACAATCTTCTGTGCCTAA+TGG | - | chr5.3:58924663-58924682 | MS.gene009724:intron | 35.0% | |
| AAACTAGACTTAGGTGGTTT+GGG | - | chr5.3:58921500-58921519 | MS.gene009724:intron | 35.0% | |
| AAATCTACAAATGCGATACC+TGG | + | chr5.3:58925360-58925379 | None:intergenic | 35.0% | |
| AACACTAAAATTGGGTCATC+GGG | - | chr5.3:58924999-58925018 | MS.gene009724:intron | 35.0% | |
| AACAGACATTACCACTTCAA+AGG | + | chr5.3:58922903-58922922 | None:intergenic | 35.0% | |
| AAGGAAGAAGGAAAGAGAAA+TGG | + | chr5.3:58924449-58924468 | None:intergenic | 35.0% | |
| ACAAGATCAGAAAGTGATGA+TGG | + | chr5.3:58924530-58924549 | None:intergenic | 35.0% | |
| ACAGAATTCATGATGTCCAA+TGG | + | chr5.3:58922342-58922361 | None:intergenic | 35.0% | |
| ACAGACATTACCACTTCAAA+GGG | + | chr5.3:58922902-58922921 | None:intergenic | 35.0% | |
| ACAGCTTAACAGTTTATGTC+TGG | + | chr5.3:58924103-58924122 | None:intergenic | 35.0% | |
| ACATGAATTGAGAGAAGACT+TGG | + | chr5.3:58923233-58923252 | None:intergenic | 35.0% | |
| ACGTACTAAATAGCGTATCA+GGG | + | chr5.3:58924888-58924907 | None:intergenic | 35.0% | |
| ACTACAAAATCGCCCATATT+TGG | + | chr5.3:58924378-58924397 | None:intergenic | 35.0% | |
| AGATGGTAGAAACTAGACTT+AGG | - | chr5.3:58921491-58921510 | MS.gene009724:intron | 35.0% | |
| AGTCAAATCACTAGAGGTAA+GGG | - | chr5.3:58921576-58921595 | MS.gene009724:intron | 35.0% | |
| AGTTAGGAGAGTAGATTAGT+GGG | - | chr5.3:58921552-58921571 | MS.gene009724:intron | 35.0% | |
| ATAAGAAGAGGGAAAGGATA+TGG | - | chr5.3:58923179-58923198 | MS.gene009724:intron | 35.0% | |
| ATATTGAACATACTGCCAAC+AGG | + | chr5.3:58922533-58922552 | None:intergenic | 35.0% | |
| ATTACGTTGCTTGAGAGTTA+TGG | - | chr5.3:58920206-58920225 | MS.gene009724:CDS | 35.0% | |
| ATTGTGCCTCATATATTGCT+TGG | - | chr5.3:58923391-58923410 | MS.gene009724:CDS | 35.0% | |
| CAACACTAAAATTGGGTCAT+CGG | - | chr5.3:58924998-58925017 | MS.gene009724:intron | 35.0% | |
| CAACTGATATGCAACTAACT+TGG | - | chr5.3:58923758-58923777 | MS.gene009724:intron | 35.0% | |
| CAAGATCAGAAAGTGATGAT+GGG | + | chr5.3:58924529-58924548 | None:intergenic | 35.0% | |
| CATAATAAGCCCATTTGGAT+TGG | + | chr5.3:58920593-58920612 | None:intergenic | 35.0% | |
| CTAACTCCCAAAAAAACCTT+CGG | - | chr5.3:58923296-58923315 | MS.gene009724:CDS | 35.0% | |
| CTACAAAATCGCCCATATTT+GGG | + | chr5.3:58924377-58924396 | None:intergenic | 35.0% | |
| CTGATATACTCCCTACATAT+AGG | + | chr5.3:58921156-58921175 | None:intergenic | 35.0% | |
| GAACTCAAGAAATGTATTGG+AGG | + | chr5.3:58924353-58924372 | None:intergenic | 35.0% | |
| GAGGATGATTATGGTTTGAA+AGG | + | chr5.3:58922824-58922843 | None:intergenic | 35.0% | |
| GCATTTCTTAGTTGGACAAT+GGG | - | chr5.3:58920375-58920394 | MS.gene009724:intron | 35.0% | |
| GCTTATTCTCTCAATATGGA+AGG | - | chr5.3:58922049-58922068 | MS.gene009724:intron | 35.0% | |
| GGAGAAGAAAAAGAAACAAG+AGG | - | chr5.3:58922768-58922787 | MS.gene009724:intron | 35.0% | |
| GGATCTAGATATCTATGAGT+TGG | - | chr5.3:58921635-58921654 | MS.gene009724:intron | 35.0% | |
| GTAAACTCTATGCAATCTAG+AGG | + | chr5.3:58924783-58924802 | None:intergenic | 35.0% | |
| GTAGCACCTATTAGAAAAGA+TGG | - | chr5.3:58921474-58921493 | MS.gene009724:intron | 35.0% | |
| GTTCAACTGAACCATATTTC+TGG | - | chr5.3:58923785-58923804 | MS.gene009724:intron | 35.0% | |
| GTTTGCAAGTTAGGAGATAA+AGG | - | chr5.3:58923039-58923058 | MS.gene009724:intron | 35.0% | |
| GTTTGTTTGGGAGTTAAAGA+GGG | + | chr5.3:58924492-58924511 | None:intergenic | 35.0% | |
| TAACCACCAAGCAATATATG+AGG | + | chr5.3:58923400-58923419 | None:intergenic | 35.0% | |
| TACAAAATCGCCCATATTTG+GGG | + | chr5.3:58924376-58924395 | None:intergenic | 35.0% | |
| TACGTACTAAATAGCGTATC+AGG | + | chr5.3:58924889-58924908 | None:intergenic | 35.0% | |
| TAGTTAGGAGAGTAGATTAG+TGG | - | chr5.3:58921551-58921570 | MS.gene009724:intron | 35.0% | |
| TCAGAACCAAACCAGAAATA+TGG | + | chr5.3:58923799-58923818 | None:intergenic | 35.0% | |
| TCTAAAAACACACCCAAACA+AGG | + | chr5.3:58923105-58923124 | None:intergenic | 35.0% | |
| TCTTACAAGCGGCTATATTT+GGG | + | chr5.3:58922374-58922393 | None:intergenic | 35.0% | |
| TTAACTGGGCATTTCTTAGT+TGG | - | chr5.3:58920367-58920386 | MS.gene009724:intron | 35.0% | |
| TTCTTACAAGCGGCTATATT+TGG | + | chr5.3:58922375-58922394 | None:intergenic | 35.0% | |
| TTTGTTTGGGAGTTAAAGAG+GGG | + | chr5.3:58924491-58924510 | None:intergenic | 35.0% | |
| ! | AATGTATTGGAGGAAGCTTT+TGG | + | chr5.3:58924343-58924362 | None:intergenic | 35.0% |
| ! | ACTGAGCAGAATTAGTTCTT+TGG | + | chr5.3:58923737-58923756 | None:intergenic | 35.0% |
| ! | ATAGGTTAGCTCAAAAAGCT+TGG | + | chr5.3:58923680-58923699 | None:intergenic | 35.0% |
| ! | CATAACTTTTTACCGGATAC+AGG | + | chr5.3:58921061-58921080 | None:intergenic | 35.0% |
| ! | CTCTCAATATGGAAGGATTT+TGG | - | chr5.3:58922056-58922075 | MS.gene009724:intron | 35.0% |
| ! | GAGAAGACTTGGAAATGTTT+TGG | + | chr5.3:58923222-58923241 | None:intergenic | 35.0% |
| ! | GCATACTTAAGGGTTTGTTT+GGG | + | chr5.3:58924504-58924523 | None:intergenic | 35.0% |
| ! | GTGGGTTAACTTAATAAGGT+TGG | + | chr5.3:58923855-58923874 | None:intergenic | 35.0% |
| ! | TGCTCTTGATTTTCCATTTC+GGG | - | chr5.3:58921874-58921893 | MS.gene009724:intron | 35.0% |
| ! | TGTTTCTTTTTCTTCTCCCT+TGG | + | chr5.3:58922766-58922785 | None:intergenic | 35.0% |
| ! | TGTTTTCGTATGAAGTTACG+GGG | - | chr5.3:58922610-58922629 | MS.gene009724:intron | 35.0% |
| ! | TTGGAGAAAGACATGGTTTT+CGG | - | chr5.3:58921654-58921673 | MS.gene009724:intron | 35.0% |
| ! | TTTTTGCTGGAGAGAAAATC+AGG | + | chr5.3:58924755-58924774 | None:intergenic | 35.0% |
| !! | AACTGTGAGTTTTGTGATAC+AGG | - | chr5.3:58921032-58921051 | MS.gene009724:intron | 35.0% |
| !! | ACTGAACCATATTTCTGGTT+TGG | - | chr5.3:58923790-58923809 | MS.gene009724:intron | 35.0% |
| !! | ATTTCTGGTTTGGTTCTGAT+TGG | - | chr5.3:58923800-58923819 | MS.gene009724:intron | 35.0% |
| !! | CCTAGTTTTCCATATTGTGT+GGG | + | chr5.3:58923995-58924014 | None:intergenic | 35.0% |
| !! | TGTTCTATTTGTTGTCGTTG+TGG | - | chr5.3:58922002-58922021 | MS.gene009724:intron | 35.0% |
| !!! | AATGCATCCGAAGGTTTTTT+TGG | + | chr5.3:58923306-58923325 | None:intergenic | 35.0% |
| !!! | ACATGGGGTGGATTTTTTTT+AGG | + | chr5.3:58923967-58923986 | None:intergenic | 35.0% |
| !!! | ATGCATCCGAAGGTTTTTTT+GGG | + | chr5.3:58923305-58923324 | None:intergenic | 35.0% |
| !!! | ATTTTGTTTTGCTGGTCTTG+GGG | - | chr5.3:58921913-58921932 | MS.gene009724:intron | 35.0% |
| !!! | GATTTTGTTTTGCTGGTCTT+GGG | - | chr5.3:58921912-58921931 | MS.gene009724:intron | 35.0% |
| !!! | GGTAGTTTTGGATTTGTGTT+AGG | - | chr5.3:58920272-58920291 | MS.gene009724:intron | 35.0% |
| !!! | TTGTTTGGGTGTGTTTTTAG+AGG | - | chr5.3:58923104-58923123 | MS.gene009724:intron | 35.0% |
| !!! | TTTTAGGTTTCAACGGTTCT+TGG | - | chr5.3:58920155-58920174 | MS.gene009724:CDS | 35.0% |
| AAGAGGAGAAAGGTGAAGAA+TGG | - | chr5.3:58922785-58922804 | MS.gene009724:intron | 40.0% | |
| AATTAAGCGTAGCAGAGATG+AGG | - | chr5.3:58921373-58921392 | MS.gene009724:intron | 40.0% | |
| ACAAAATCGCCCATATTTGG+GGG | + | chr5.3:58924375-58924394 | None:intergenic | 40.0% | |
| ACCAGAACAGACCTAATGAT+AGG | + | chr5.3:58923698-58923717 | None:intergenic | 40.0% | |
| ACCTATCATTAGGTCTGTTC+TGG | - | chr5.3:58923694-58923713 | MS.gene009724:intron | 40.0% | |
| AGGATGTTGCATACTTGCAT+TGG | - | chr5.3:58921393-58921412 | MS.gene009724:intron | 40.0% | |
| ATTACAATATCCCCCCGAAA+TGG | + | chr5.3:58921890-58921909 | None:intergenic | 40.0% | |
| CACTAGTAGTCAACATGTCA+CGG | - | chr5.3:58923872-58923891 | MS.gene009724:intron | 40.0% | |
| CACTGTAAGATAACTTGAGC+AGG | + | chr5.3:58922286-58922305 | None:intergenic | 40.0% | |
| CCCACACAATATGGAAAACT+AGG | - | chr5.3:58923992-58924011 | MS.gene009724:intron | 40.0% | |
| CTCGGTCCCCATATATATAT+TGG | - | chr5.3:58921837-58921856 | MS.gene009724:intron | 40.0% | |
| GAAACTAGACTTAGGTGGTT+TGG | - | chr5.3:58921499-58921518 | MS.gene009724:intron | 40.0% | |
| GACAACATTAGAGAAAGGTG+AGG | - | chr5.3:58921452-58921471 | MS.gene009724:intron | 40.0% | |
| GAGTCAAATCACTAGAGGTA+AGG | - | chr5.3:58921575-58921594 | MS.gene009724:intron | 40.0% | |
| GGCATTTCTTAGTTGGACAA+TGG | - | chr5.3:58920374-58920393 | MS.gene009724:intron | 40.0% | |
| GGGGAACTCAAGAAATGTAT+TGG | + | chr5.3:58924356-58924375 | None:intergenic | 40.0% | |
| GTGAGTATGTGAGAAAGAGA+GGG | - | chr5.3:58923558-58923577 | MS.gene009724:intron | 40.0% | |
| GTGTTGTGAATTGCAGATTG+TGG | + | chr5.3:58924984-58925003 | None:intergenic | 40.0% | |
| GTTAGGAGAGTAGATTAGTG+GGG | - | chr5.3:58921553-58921572 | MS.gene009724:intron | 40.0% | |
| TAGCCGCTTGTAAGAATTCT+TGG | - | chr5.3:58922379-58922398 | MS.gene009724:intron | 40.0% | |
| TCGAAGAGTAACTTTGAGCA+GGG | + | chr5.3:58920985-58921004 | None:intergenic | 40.0% | |
| TCTGTACAGCTGAGAAAAAG+AGG | - | chr5.3:58924625-58924644 | MS.gene009724:intron | 40.0% | |
| TCTTGAGTTCCCCCAAATAT+GGG | - | chr5.3:58924363-58924382 | MS.gene009724:intron | 40.0% | |
| TGAGTATGTGAGAAAGAGAG+GGG | - | chr5.3:58923559-58923578 | MS.gene009724:intron | 40.0% | |
| TGATACAGGTATCCTGTATC+CGG | - | chr5.3:58921046-58921065 | MS.gene009724:intron | 40.0% | |
| TGCTTAGGGTAAAAGGAAGA+AGG | + | chr5.3:58924461-58924480 | None:intergenic | 40.0% | |
| TGGTAGAAACTAGACTTAGG+TGG | - | chr5.3:58921494-58921513 | MS.gene009724:intron | 40.0% | |
| TGTCATATGTACGGGACAAA+GGG | - | chr5.3:58921321-58921340 | MS.gene009724:intron | 40.0% | |
| TGTGAGTATGTGAGAAAGAG+AGG | - | chr5.3:58923557-58923576 | MS.gene009724:intron | 40.0% | |
| TTCTTGAGTTCCCCCAAATA+TGG | - | chr5.3:58924362-58924381 | MS.gene009724:intron | 40.0% | |
| TTGACGTATGATAGAGGACT+CGG | - | chr5.3:58921819-58921838 | MS.gene009724:intron | 40.0% | |
| TTGTCATATGTACGGGACAA+AGG | - | chr5.3:58921320-58921339 | MS.gene009724:intron | 40.0% | |
| TTGTGAAATAGCGGTTATGG+AGG | - | chr5.3:58924912-58924931 | MS.gene009724:intron | 40.0% | |
| TTTCGGGGGGATATTGTAAT+TGG | - | chr5.3:58921890-58921909 | MS.gene009724:intron | 40.0% | |
| ! | AGTTTTCCATATTGTGTGGG+AGG | + | chr5.3:58923992-58924011 | None:intergenic | 40.0% |
| ! | ATGATGGGAGGCATACTTAA+GGG | + | chr5.3:58924514-58924533 | None:intergenic | 40.0% |
| ! | CGAACAATACCCAGGTTTTA+AGG | - | chr5.3:58925311-58925330 | MS.gene009724:intron | 40.0% |
| ! | CTATGAGTTGGAGAAAGACA+TGG | - | chr5.3:58921647-58921666 | MS.gene009724:intron | 40.0% |
| ! | CTCTTGATTTTCCATTTCGG+GGG | - | chr5.3:58921876-58921895 | MS.gene009724:intron | 40.0% |
| ! | GCTCTTGATTTTCCATTTCG+GGG | - | chr5.3:58921875-58921894 | MS.gene009724:intron | 40.0% |
| ! | GGCATACTTAAGGGTTTGTT+TGG | + | chr5.3:58924505-58924524 | None:intergenic | 40.0% |
| ! | GGTTTGTTTGGGAGTTAAAG+AGG | + | chr5.3:58924493-58924512 | None:intergenic | 40.0% |
| ! | GTGACATGTTGACTACTAGT+GGG | + | chr5.3:58923873-58923892 | None:intergenic | 40.0% |
| ! | GTTTTCCATATTGTGTGGGA+GGG | + | chr5.3:58923991-58924010 | None:intergenic | 40.0% |
| ! | TATTGGAGGAAGCTTTTGGA+GGG | + | chr5.3:58924339-58924358 | None:intergenic | 40.0% |
| ! | TCTAGAGGCAAAGTTTTTGC+TGG | + | chr5.3:58924768-58924787 | None:intergenic | 40.0% |
| ! | TCTTGATTTTCCATTTCGGG+GGG | - | chr5.3:58921877-58921896 | MS.gene009724:intron | 40.0% |
| ! | TGGGCGATTTTGTAGTATGA+AGG | - | chr5.3:58924382-58924401 | MS.gene009724:intron | 40.0% |
| ! | TGGTTTTCGGTAGAACACTA+TGG | - | chr5.3:58921667-58921686 | MS.gene009724:intron | 40.0% |
| !! | GCCTAGTTTTCCATATTGTG+TGG | + | chr5.3:58923996-58924015 | None:intergenic | 40.0% |
| !!! | AGGTTTTTTTGGGAGTTAGG+TGG | + | chr5.3:58923295-58923314 | None:intergenic | 40.0% |
| !!! | CGAAGGTTTTTTTGGGAGTT+AGG | + | chr5.3:58923298-58923317 | None:intergenic | 40.0% |
| !!! | GGATTTTGTTTTGCTGGTCT+TGG | - | chr5.3:58921911-58921930 | MS.gene009724:intron | 40.0% |
| !!! | GGGGTGGATTTTTTTTAGGT+GGG | + | chr5.3:58923963-58923982 | None:intergenic | 40.0% |
| !!! | GGGTGGATTTTTTTTAGGTG+GGG | + | chr5.3:58923962-58923981 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTTTTTAGGTGG+GGG | + | chr5.3:58923961-58923980 | None:intergenic | 40.0% |
| !!! | TGGGGTGGATTTTTTTTAGG+TGG | + | chr5.3:58923964-58923983 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTGCTGGTCTTGG+GGG | - | chr5.3:58921914-58921933 | MS.gene009724:intron | 40.0% |
| !!! | TTTTTTTTAGGTGGGGGATG+AGG | + | chr5.3:58923955-58923974 | None:intergenic | 40.0% |
| AAAGGGAGGTGAGAGCTTTA+GGG | - | chr5.3:58923057-58923076 | MS.gene009724:intron | 45.0% | |
| AAGCGCACTTCCTTAAAACC+TGG | + | chr5.3:58925324-58925343 | None:intergenic | 45.0% | |
| ACAATCATCCATGGCAATGC+AGG | - | chr5.3:58925392-58925411 | MS.gene009724:intron | 45.0% | |
| ACACATGGTGCAAGTAATGG+TGG | - | chr5.3:58924690-58924709 | MS.gene009724:intron | 45.0% | |
| AGATGAGGCACAATCATCCA+TGG | - | chr5.3:58925383-58925402 | MS.gene009724:intron | 45.0% | |
| AGCGCACTTCCTTAAAACCT+GGG | + | chr5.3:58925323-58925342 | None:intergenic | 45.0% | |
| ATATGTACGGGACAAAGGGT+TGG | - | chr5.3:58921325-58921344 | MS.gene009724:intron | 45.0% | |
| ATATTGTGTGGGAGGGAACA+TGG | + | chr5.3:58923984-58924003 | None:intergenic | 45.0% | |
| ATCCTGCCGGTAGTTTCATA+AGG | + | chr5.3:58925276-58925295 | None:intergenic | 45.0% | |
| ATGCTCTTCGAACAATACCC+AGG | - | chr5.3:58925303-58925322 | MS.gene009724:intron | 45.0% | |
| ATGTTCCCTCCCACACAATA+TGG | - | chr5.3:58923983-58924002 | MS.gene009724:intron | 45.0% | |
| CAAACTCGGCTACACAACAA+TGG | + | chr5.3:58924945-58924964 | None:intergenic | 45.0% | |
| CAATCTTCTGTGCCTAATGG+TGG | - | chr5.3:58924666-58924685 | MS.gene009724:intron | 45.0% | |
| CTCGAAGAGTAACTTTGAGC+AGG | + | chr5.3:58920986-58921005 | None:intergenic | 45.0% | |
| CTCTAGTTGCGAGTTTGTAG+TGG | - | chr5.3:58924151-58924170 | MS.gene009724:intron | 45.0% | |
| GAAAGGAAGATAGTTCCCCA+TGG | + | chr5.3:58923266-58923285 | None:intergenic | 45.0% | |
| GATGTGTGGTAAGACTAGAC+TGG | - | chr5.3:58921415-58921434 | MS.gene009724:intron | 45.0% | |
| GCAAGTTAGGAGATAAAGGG+AGG | - | chr5.3:58923043-58923062 | MS.gene009724:intron | 45.0% | |
| GCATACTTGCATTGGATGTG+TGG | - | chr5.3:58921401-58921420 | MS.gene009724:intron | 45.0% | |
| GGAACACATGGTGCAAGTAA+TGG | - | chr5.3:58924687-58924706 | MS.gene009724:intron | 45.0% | |
| GTGCCTCATATATTGCTTGG+TGG | - | chr5.3:58923394-58923413 | MS.gene009724:CDS | 45.0% | |
| TAAAGGGAGGTGAGAGCTTT+AGG | - | chr5.3:58923056-58923075 | MS.gene009724:intron | 45.0% | |
| TAACGGCTACAGTAGTGCTA+TGG | - | chr5.3:58924823-58924842 | MS.gene009724:intron | 45.0% | |
| TAGTTGCGAGTTTGTAGTGG+AGG | - | chr5.3:58924154-58924173 | MS.gene009724:intron | 45.0% | |
| TATGTGAGAAAGAGAGGGGA+GGG | - | chr5.3:58923563-58923582 | MS.gene009724:intron | 45.0% | |
| TATTGTGTGGGAGGGAACAT+GGG | + | chr5.3:58923983-58924002 | None:intergenic | 45.0% | |
| ! | AGTTGCGAGTTTGTAGTGGA+GGG | - | chr5.3:58924155-58924174 | MS.gene009724:intron | 45.0% |
| ! | AGTTTGTAGTGGAGGGCTTT+GGG | - | chr5.3:58924162-58924181 | MS.gene009724:intron | 45.0% |
| ! | CGTGACATGTTGACTACTAG+TGG | + | chr5.3:58923874-58923893 | None:intergenic | 45.0% |
| ! | GTATTGGAGGAAGCTTTTGG+AGG | + | chr5.3:58924340-58924359 | None:intergenic | 45.0% |
| ! | TCATGTTCGAGTTCCTCCAT+GGG | - | chr5.3:58923247-58923266 | MS.gene009724:intron | 45.0% |
| ! | TGTGTCTGAAATGCATCCGA+AGG | + | chr5.3:58923315-58923334 | None:intergenic | 45.0% |
| ! | TTCATGTTCGAGTTCCTCCA+TGG | - | chr5.3:58923246-58923265 | MS.gene009724:intron | 45.0% |
| !! | AAGAGGGAAGCTTTGTTCCA+AGG | - | chr5.3:58922746-58922765 | MS.gene009724:CDS | 45.0% |
| !! | AGAGGGAAGCTTTGTTCCAA+GGG | - | chr5.3:58922747-58922766 | MS.gene009724:CDS | 45.0% |
| !! | AGGAGAGTGCTTAGGGTAAA+AGG | + | chr5.3:58924468-58924487 | None:intergenic | 45.0% |
| !! | GATCAGAAAGTGATGATGGG+AGG | + | chr5.3:58924526-58924545 | None:intergenic | 45.0% |
| !! | GATGATGGGAGGCATACTTA+AGG | + | chr5.3:58924515-58924534 | None:intergenic | 45.0% |
| AAACACACCCAAACAAGGCG+AGG | + | chr5.3:58923100-58923119 | None:intergenic | 50.0% | |
| AGGAAGATAGTTCCCCATGG+AGG | + | chr5.3:58923263-58923282 | None:intergenic | 50.0% | |
| AGTTGGACAATGGGTCCGTT+TGG | - | chr5.3:58920384-58920403 | MS.gene009724:intron | 50.0% | |
| ATGGCAATGCAGGCTCTACA+AGG | - | chr5.3:58925402-58925421 | MS.gene009724:intron | 50.0% | |
| ATTGTGTGGGAGGGAACATG+GGG | + | chr5.3:58923982-58924001 | None:intergenic | 50.0% | |
| CATCTGTCGCACTGCATTAC+TGG | + | chr5.3:58922151-58922170 | None:intergenic | 50.0% | |
| CTAAAGACGCCTAAGCTTCG+AGG | - | chr5.3:58922090-58922109 | MS.gene009724:intron | 50.0% | |
| GAGTTAGGTGGAGACAGGAA+AGG | + | chr5.3:58923283-58923302 | None:intergenic | 50.0% | |
| GCACCATGTGTTCCACCATT+AGG | + | chr5.3:58924681-58924700 | None:intergenic | 50.0% | |
| GCATGTAGAGAGAAGACCTG+GGG | - | chr5.3:58921522-58921541 | MS.gene009724:intron | 50.0% | |
| GCTATGGCGCTATTGCATAG+CGG | - | chr5.3:58924839-58924858 | MS.gene009724:intron | 50.0% | |
| GGCATGTAGAGAGAAGACCT+GGG | - | chr5.3:58921521-58921540 | MS.gene009724:intron | 50.0% | |
| GTATGTGAGAAAGAGAGGGG+AGG | - | chr5.3:58923562-58923581 | MS.gene009724:intron | 50.0% | |
| GTGGGGAGTCAAATCACTAG+AGG | - | chr5.3:58921570-58921589 | MS.gene009724:intron | 50.0% | |
| GTTTGGGAGTTAAAGAGGGG+AGG | + | chr5.3:58924488-58924507 | None:intergenic | 50.0% | |
| TAAGCTTCGAGGACAGGCAT+GGG | - | chr5.3:58922101-58922120 | MS.gene009724:intron | 50.0% | |
| TGCCTTATGAAACTACCGGC+AGG | - | chr5.3:58925271-58925290 | MS.gene009724:intron | 50.0% | |
| TTAGAGGTGAGCAGTCGAGA+AGG | - | chr5.3:58923120-58923139 | MS.gene009724:intron | 50.0% | |
| TTGTAGAGCCTGCATTGCCA+TGG | + | chr5.3:58925403-58925422 | None:intergenic | 50.0% | |
| TTTGGGAGTTAGGTGGAGAC+AGG | + | chr5.3:58923288-58923307 | None:intergenic | 50.0% | |
| ! | AAGCCTTATCCCACCAAGTG+GGG | + | chr5.3:58921716-58921735 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACCAAGT+GGG | + | chr5.3:58921717-58921736 | None:intergenic | 50.0% |
| ! | CATGTTCGAGTTCCTCCATG+GGG | - | chr5.3:58923248-58923267 | MS.gene009724:intron | 50.0% |
| ! | GAGTTTGTAGTGGAGGGCTT+TGG | - | chr5.3:58924161-58924180 | MS.gene009724:intron | 50.0% |
| ! | GTGCCTAATGGTGGAACACA+TGG | - | chr5.3:58924675-58924694 | MS.gene009724:intron | 50.0% |
| ! | GTTTGTAGTGGAGGGCTTTG+GGG | - | chr5.3:58924163-58924182 | MS.gene009724:intron | 50.0% |
| ! | TTTGTAGTGGAGGGCTTTGG+GGG | - | chr5.3:58924164-58924183 | MS.gene009724:intron | 50.0% |
| !! | AGAGCTTTAGGGAGAGACGA+GGG | - | chr5.3:58923068-58923087 | MS.gene009724:intron | 50.0% |
| !! | GGGAATACCTCGCCTTGTTT+GGG | - | chr5.3:58923090-58923109 | MS.gene009724:intron | 50.0% |
| AAAGAGAGGGGAGGGAAGAG+GGG | - | chr5.3:58923571-58923590 | MS.gene009724:intron | 55.0% | |
| AGAAAGAGAGGGGAGGGAAG+AGG | - | chr5.3:58923569-58923588 | MS.gene009724:intron | 55.0% | |
| CATGCCTGTCCTCGAAGCTT+AGG | + | chr5.3:58922102-58922121 | None:intergenic | 55.0% | |
| CGCTTGATCGAAGCAAAGCC+AGG | - | chr5.3:58925339-58925358 | MS.gene009724:intron | 55.0% | |
| CTAAGCTTCGAGGACAGGCA+TGG | - | chr5.3:58922100-58922119 | MS.gene009724:intron | 55.0% | |
| CTCCTAACTACAGCATCCCC+AGG | + | chr5.3:58921541-58921560 | None:intergenic | 55.0% | |
| CTTATCCCACCAAGTGGGGT+CGG | + | chr5.3:58921712-58921731 | None:intergenic | 55.0% | |
| GAAAGAGAGGGGAGGGAAGA+GGG | - | chr5.3:58923570-58923589 | MS.gene009724:intron | 55.0% | |
| GACCTGGGGATGCTGTAGTT+AGG | - | chr5.3:58921536-58921555 | MS.gene009724:intron | 55.0% | |
| GAGCATTTCGAGCATCCTGC+CGG | + | chr5.3:58925289-58925308 | None:intergenic | 55.0% | |
| GGGCATGTAGAGAGAAGACC+TGG | - | chr5.3:58921520-58921539 | MS.gene009724:intron | 55.0% | |
| GTACGGGACAAAGGGTTGGA+CGG | - | chr5.3:58921329-58921348 | MS.gene009724:intron | 55.0% | |
| GTGGGGGATGAGGAAACTGA+TGG | + | chr5.3:58923945-58923964 | None:intergenic | 55.0% | |
| TCGAGAAGGAGGCTTACGAG+TGG | - | chr5.3:58923134-58923153 | MS.gene009724:intron | 55.0% | |
| TGTATGTAGCCGACCCCACT+TGG | - | chr5.3:58921700-58921719 | MS.gene009724:intron | 55.0% | |
| TTTGGGGGGAGGGAAGTAGA+GGG | - | chr5.3:58924179-58924198 | MS.gene009724:intron | 55.0% | |
| ! | CCAAGCCTTATCCCACCAAG+TGG | + | chr5.3:58921718-58921737 | None:intergenic | 55.0% |
| ! | CCACTTGGTGGGATAAGGCT+TGG | - | chr5.3:58921715-58921734 | MS.gene009724:intron | 55.0% |
| ! | GGGGAATACCTCGCCTTGTT+TGG | - | chr5.3:58923089-58923108 | MS.gene009724:intron | 55.0% |
| !! | AAGAGGGGAGGAGAGTGCTT+AGG | + | chr5.3:58924476-58924495 | None:intergenic | 55.0% |
| !! | AGAGGGGAGGAGAGTGCTTA+GGG | + | chr5.3:58924475-58924494 | None:intergenic | 55.0% |
| !! | AGCTTTAGGGAGAGACGAGG+GGG | - | chr5.3:58923070-58923089 | MS.gene009724:intron | 55.0% |
| !! | GAGAGCTTTAGGGAGAGACG+AGG | - | chr5.3:58923067-58923086 | MS.gene009724:intron | 55.0% |
| !! | GAGCTTTAGGGAGAGACGAG+GGG | - | chr5.3:58923069-58923088 | MS.gene009724:intron | 55.0% |
| !! | TTGTAGTGGAGGGCTTTGGG+GGG | - | chr5.3:58924165-58924184 | MS.gene009724:intron | 55.0% |
| AGCAGGCCTCATTCCGTCCA+GGG | - | chr5.3:58925196-58925215 | MS.gene009724:intron | 60.0% | |
| ATGTAGCCGACCCCACTTGG+TGG | - | chr5.3:58921703-58921722 | MS.gene009724:intron | 60.0% | |
| GACGCCTAAGCTTCGAGGAC+AGG | - | chr5.3:58922095-58922114 | MS.gene009724:intron | 60.0% | |
| GAGGTGAGCAGTCGAGAAGG+AGG | - | chr5.3:58923123-58923142 | MS.gene009724:intron | 60.0% | |
| GTTGGGAGCAGCTGCCTCTT+GGG | + | chr5.3:58925229-58925248 | None:intergenic | 60.0% | |
| TGTAGCCGACCCCACTTGGT+GGG | - | chr5.3:58921704-58921723 | MS.gene009724:intron | 60.0% | |
| TGTTGGGAGCAGCTGCCTCT+TGG | + | chr5.3:58925230-58925249 | None:intergenic | 60.0% | |
| ! | CGACCCCACTTGGTGGGATA+AGG | - | chr5.3:58921710-58921729 | MS.gene009724:intron | 60.0% |
| ! | CTTTGGGGGGAGGGAAGTAG+AGG | - | chr5.3:58924178-58924197 | MS.gene009724:intron | 60.0% |
| ACCGGACCCTGGACGGAATG+AGG | + | chr5.3:58925205-58925224 | None:intergenic | 65.0% | |
| AGCAGCTGCCTCTTGGGCAC+CGG | + | chr5.3:58925223-58925242 | None:intergenic | 65.0% | |
| CAGCAGGCCTCATTCCGTCC+AGG | - | chr5.3:58925195-58925214 | MS.gene009724:intron | 65.0% | |
| GCCTCATTCCGTCCAGGGTC+CGG | - | chr5.3:58925201-58925220 | MS.gene009724:intron | 65.0% | |
| GTGTGGGAGGGAACATGGGG+TGG | + | chr5.3:58923979-58923998 | None:intergenic | 65.0% | |
| !! | AGTGGAGGGCTTTGGGGGGA+GGG | - | chr5.3:58924169-58924188 | MS.gene009724:intron | 65.0% |
| !! | TAGTGGAGGGCTTTGGGGGG+AGG | - | chr5.3:58924168-58924187 | MS.gene009724:intron | 65.0% |
| TCCAGGGTCCGGTGCCCAAG+AGG | - | chr5.3:58925212-58925231 | MS.gene009724:intron | 70.0% | |
| !! | CTTGGGCACCGGACCCTGGA+CGG | + | chr5.3:58925212-58925231 | None:intergenic | 70.0% |
| !! | GCCTCTTGGGCACCGGACCC+TGG | + | chr5.3:58925216-58925235 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 58920008 | 58925476 | 58920008 | ID=MS.gene009724 |
| chr5.3 | mRNA | 58920008 | 58925476 | 58920008 | ID=MS.gene009724.t1;Parent=MS.gene009724 |
| chr5.3 | exon | 58925404 | 58925476 | 58925404 | ID=MS.gene009724.t1.exon1;Parent=MS.gene009724.t1 |
| chr5.3 | CDS | 58925404 | 58925476 | 58925404 | ID=cds.MS.gene009724.t1;Parent=MS.gene009724.t1 |
| chr5.3 | exon | 58923284 | 58923456 | 58923284 | ID=MS.gene009724.t1.exon2;Parent=MS.gene009724.t1 |
| chr5.3 | CDS | 58923284 | 58923456 | 58923284 | ID=cds.MS.gene009724.t1;Parent=MS.gene009724.t1 |
| chr5.3 | exon | 58922688 | 58922781 | 58922688 | ID=MS.gene009724.t1.exon3;Parent=MS.gene009724.t1 |
| chr5.3 | CDS | 58922688 | 58922781 | 58922688 | ID=cds.MS.gene009724.t1;Parent=MS.gene009724.t1 |
| chr5.3 | exon | 58920765 | 58920850 | 58920765 | ID=MS.gene009724.t1.exon4;Parent=MS.gene009724.t1 |
| chr5.3 | CDS | 58920765 | 58920850 | 58920765 | ID=cds.MS.gene009724.t1;Parent=MS.gene009724.t1 |
| chr5.3 | exon | 58920008 | 58920283 | 58920008 | ID=MS.gene009724.t1.exon5;Parent=MS.gene009724.t1 |
| chr5.3 | CDS | 58920008 | 58920283 | 58920008 | ID=cds.MS.gene009724.t1;Parent=MS.gene009724.t1 |
| Gene Sequence |
| Protein sequence |
