Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067952.t1 | XP_013446173.1 | 98.7 | 469 | 6 | 0 | 1 | 469 | 42 | 510 | 8.20E-259 | 902.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067952.t1 | Q9LPV5 | 75.6 | 450 | 110 | 0 | 1 | 450 | 44 | 493 | 9.9e-197 | 687.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067952.t1 | A0A072U314 | 98.7 | 469 | 6 | 0 | 1 | 469 | 42 | 510 | 5.9e-259 | 902.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049452 | MS.gene067952 | 0.803432 | 3.50E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene067952 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene050221 | MS.gene067952 | 0.806073 | 9.82E-50 | -1.69E-46 |
| MS.gene052037 | MS.gene067952 | 0.802109 | 6.56E-49 | -1.69E-46 |
| MS.gene053643 | MS.gene067952 | 0.81566 | 8.25E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene067952 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene067952 | 0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene056444 | MS.gene067952 | 0.888369 | 6.28E-73 | -1.69E-46 |
| MS.gene05686 | MS.gene067952 | 0.815595 | 8.53E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene067952 | 0.803145 | 4.01E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08666 | MS.gene067952 | PPI |
| MS.gene067952 | MS.gene007705 | PPI |
| MS.gene067952 | MS.gene08733 | PPI |
| MS.gene067952 | MS.gene050096 | PPI |
| MS.gene067952 | MS.gene050095 | PPI |
| MS.gene007704 | MS.gene067952 | PPI |
| MS.gene08732 | MS.gene067952 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067952.t1 | MTR_8g069775 | 98.721 | 469 | 6 | 0 | 1 | 469 | 42 | 510 | 0.0 | 938 |
| MS.gene067952.t1 | MTR_4g057890 | 61.325 | 468 | 178 | 2 | 1 | 468 | 62 | 526 | 0.0 | 609 |
| MS.gene067952.t1 | MTR_4g057865 | 61.111 | 468 | 179 | 2 | 1 | 468 | 62 | 526 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067952.t1 | AT1G12940 | 75.556 | 450 | 110 | 0 | 1 | 450 | 44 | 493 | 0.0 | 715 |
| MS.gene067952.t1 | AT5G60770 | 58.686 | 472 | 186 | 3 | 1 | 469 | 62 | 527 | 0.0 | 587 |
| MS.gene067952.t1 | AT1G08090 | 57.749 | 471 | 195 | 2 | 1 | 469 | 62 | 530 | 0.0 | 580 |
| MS.gene067952.t1 | AT1G08100 | 58.022 | 455 | 190 | 1 | 1 | 454 | 60 | 514 | 0.0 | 561 |
| MS.gene067952.t1 | AT5G60780 | 57.537 | 471 | 198 | 1 | 1 | 469 | 69 | 539 | 0.0 | 553 |
| MS.gene067952.t1 | AT3G45060 | 57.962 | 471 | 196 | 1 | 1 | 469 | 72 | 542 | 0.0 | 552 |
| MS.gene067952.t1 | AT5G14570 | 51.209 | 455 | 200 | 3 | 3 | 440 | 41 | 490 | 1.69e-159 | 461 |
Find 80 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGTTGCATCTGTTTC+TGG | 0.074073 | 8.3:-33096745 | MS.gene067952:CDS |
| AGCAGTTCCCATTGCAATTC+TGG | 0.180522 | 8.3:+33096711 | None:intergenic |
| TTCCAGCAGTGTGAAGTTTA+AGG | 0.193334 | 8.3:+33095646 | None:intergenic |
| TGGTTTATTATCTGATTTAA+TGG | 0.218179 | 8.3:-33095574 | MS.gene067952:CDS |
| CTTCTTGTGAGGTTCTTTAC+TGG | 0.225051 | 8.3:-33096589 | MS.gene067952:CDS |
| TTGGAATGAGGGGTAGATTA+TGG | 0.258780 | 8.3:-33095542 | MS.gene067952:CDS |
| GATTTAATGGCTAAGAGATT+TGG | 0.279825 | 8.3:-33095561 | MS.gene067952:CDS |
| TTGACTTATGGTTATTGTTT+TGG | 0.287818 | 8.3:-33095723 | MS.gene067952:CDS |
| GGAATCATTGCTGCAAGTTT+TGG | 0.302049 | 8.3:-33095627 | MS.gene067952:CDS |
| GGTGGGTGGGGTAACCTTGG+TGG | 0.319262 | 8.3:-33096005 | MS.gene067952:CDS |
| GGAAAATATATTAAGAATAA+TGG | 0.321070 | 8.3:+33094148 | None:intergenic |
| TTAAGGTTGTCACGGATTAT+AGG | 0.361381 | 8.3:+33096793 | None:intergenic |
| AGAAAGAGGAATAACTCTAA+TGG | 0.367970 | 8.3:-33094197 | MS.gene067952:CDS |
| AATGGGAACTGCTTGTGATT+TGG | 0.383228 | 8.3:-33096701 | MS.gene067952:CDS |
| AACCTTAAACTTCACACTGC+TGG | 0.383716 | 8.3:-33095648 | MS.gene067952:CDS |
| ATCCTTTGAAGAAAATTAGT+TGG | 0.392329 | 8.3:+33094233 | None:intergenic |
| TATCCGTTGCTGTTAGGTTA+AGG | 0.394367 | 8.3:+33096776 | None:intergenic |
| AACCTAACAGCAACGGATAT+AGG | 0.398418 | 8.3:-33096772 | MS.gene067952:CDS |
| AGGTCCTTAGGAGTCATATC+AGG | 0.406117 | 8.3:-33094295 | MS.gene067952:CDS |
| GAAAGAGGAATAACTCTAAT+GGG | 0.408051 | 8.3:-33094196 | MS.gene067952:CDS |
| CATGGTGTGTTAAATTATAG+AGG | 0.409317 | 8.3:-33095759 | MS.gene067952:CDS |
| GCTGCTTGTGGAATGACATT+TGG | 0.409888 | 8.3:-33095408 | MS.gene067952:CDS |
| TATCATAGCTTAAAGAAATC+AGG | 0.412558 | 8.3:-33095819 | MS.gene067952:CDS |
| TCTATTATCAATTCTCCTAC+TGG | 0.423158 | 8.3:-33096616 | MS.gene067952:CDS |
| TTCCTATATCCGTTGCTGTT+AGG | 0.424382 | 8.3:+33096770 | None:intergenic |
| CACAGAAGAAGATTACTATA+TGG | 0.427355 | 8.3:-33094083 | MS.gene067952:CDS |
| TCAGGTGGGTGGGGTAACCT+TGG | 0.436260 | 8.3:-33096008 | MS.gene067952:intron |
| GGAAGAGCAAATGGTTTCTC+AGG | 0.441053 | 8.3:-33096499 | MS.gene067952:intron |
| TGCTAGCATTTCATCTATCA+TGG | 0.442197 | 8.3:-33096867 | MS.gene067952:CDS |
| GGGTGGGGTAACCTTGGTGG+AGG | 0.446755 | 8.3:-33096002 | MS.gene067952:CDS |
| TGCAACTATTTCAGGTCCTT+AGG | 0.448649 | 8.3:-33094307 | MS.gene067952:intron |
| ACTGTTGTTGGAAGAGCAAA+TGG | 0.454937 | 8.3:-33096508 | MS.gene067952:CDS |
| TCCTTTGAAGAAAATTAGTT+GGG | 0.459131 | 8.3:+33094234 | None:intergenic |
| GGCTAAGAGATTTGGAATGA+GGG | 0.467670 | 8.3:-33095553 | MS.gene067952:CDS |
| AAGCTATGATAATTACCATC+TGG | 0.469954 | 8.3:+33095831 | None:intergenic |
| TGGATTTGTCAAACGTTGGC+TGG | 0.472815 | 8.3:-33095513 | MS.gene067952:CDS |
| GGGGTAGATTATGGTGTTTG+TGG | 0.475044 | 8.3:-33095533 | MS.gene067952:CDS |
| TGGCTAAGAGATTTGGAATG+AGG | 0.480994 | 8.3:-33095554 | MS.gene067952:CDS |
| ACATACCTTCTTGAGACAAA+AGG | 0.496721 | 8.3:+33095378 | None:intergenic |
| TTCAGCTATGATATTGTCAA+TGG | 0.501509 | 8.3:+33095689 | None:intergenic |
| GATAATAGTAGAAGTGAAAG+AGG | 0.507879 | 8.3:-33094001 | MS.gene067952:CDS |
| AAGATTACTATATGGCTGAA+TGG | 0.518793 | 8.3:-33094075 | MS.gene067952:CDS |
| AACTCAAAGGAGAGGGAGAA+AGG | 0.520853 | 8.3:-33094052 | MS.gene067952:CDS |
| TAAGGTGCATATTATGATCA+TGG | 0.523894 | 8.3:+33094171 | None:intergenic |
| CATTCCTGATATGACTCCTA+AGG | 0.529469 | 8.3:+33094291 | None:intergenic |
| CATTTCAACTAGGCCTTCTG+AGG | 0.536507 | 8.3:-33093966 | MS.gene067952:CDS |
| TCAGATAATAAACCACCTCC+TGG | 0.536893 | 8.3:+33095582 | None:intergenic |
| CTGTTAGGTTAAGGTTGTCA+CGG | 0.537447 | 8.3:+33096785 | None:intergenic |
| GGAGTCATATCAGGAATGAC+AGG | 0.542118 | 8.3:-33094286 | MS.gene067952:CDS |
| GTGTGTTAAATTATAGAGGG+TGG | 0.543363 | 8.3:-33095755 | MS.gene067952:CDS |
| TTTGGTCAAGATTTACCAGA+TGG | 0.543573 | 8.3:-33095846 | MS.gene067952:CDS |
| TCAGGAATGACAGGAGGAGG+AGG | 0.547520 | 8.3:-33094277 | MS.gene067952:CDS |
| CTGAATGGAACTCAAAGGAG+AGG | 0.547602 | 8.3:-33094060 | MS.gene067952:CDS |
| GGAACTGCTTGTGATTTGGT+TGG | 0.550581 | 8.3:-33096697 | MS.gene067952:CDS |
| GCAACGGATATAGGAAATGC+TGG | 0.559363 | 8.3:-33096763 | MS.gene067952:CDS |
| ATATCAGGAATGACAGGAGG+AGG | 0.569761 | 8.3:-33094280 | MS.gene067952:CDS |
| GAAAATTGAACATTTCAACT+AGG | 0.570170 | 8.3:-33093976 | MS.gene067952:CDS |
| AAACTGAGTAGAAACAAAAG+TGG | 0.576179 | 8.3:+33096555 | None:intergenic |
| ATATATTAAGAATAATGGTA+AGG | 0.576979 | 8.3:+33094153 | None:intergenic |
| AGGGAGAAAGGCTCTCATCA+TGG | 0.577211 | 8.3:-33094040 | MS.gene067952:CDS |
| GCTCAACAAAATTCACTGCA+TGG | 0.585027 | 8.3:-33095929 | MS.gene067952:CDS |
| ATAGAAGTGAAGTAAACAGC+AGG | 0.585810 | 8.3:+33096634 | None:intergenic |
| CTCTATAATTTAACACACCA+TGG | 0.586174 | 8.3:+33095760 | None:intergenic |
| TTTGTGGATTTGTCAAACGT+TGG | 0.593191 | 8.3:-33095517 | MS.gene067952:CDS |
| GCTAAGAGATTTGGAATGAG+GGG | 0.599275 | 8.3:-33095552 | MS.gene067952:CDS |
| AATAGTAGAAGTGAAAGAGG+TGG | 0.601395 | 8.3:-33093998 | MS.gene067952:CDS |
| ACAGGAGGAGGAGGAAACGT+TGG | 0.608583 | 8.3:-33094268 | MS.gene067952:CDS |
| TGAATGGAACTCAAAGGAGA+GGG | 0.609630 | 8.3:-33094059 | MS.gene067952:CDS |
| TATGGCTGAATGGAACTCAA+AGG | 0.622357 | 8.3:-33094065 | MS.gene067952:CDS |
| TGTATCAGTGAAAACACAAG+TGG | 0.625394 | 8.3:+33095960 | None:intergenic |
| ATCTCAAAAGTAATTTACCA+TGG | 0.629190 | 8.3:-33095777 | MS.gene067952:CDS |
| ATGGTGTGTTAAATTATAGA+GGG | 0.629408 | 8.3:-33095758 | MS.gene067952:CDS |
| TCACGGATTATAGGAACAAG+TGG | 0.646242 | 8.3:+33096802 | None:intergenic |
| GTCATATCAGGAATGACAGG+AGG | 0.646603 | 8.3:-33094283 | MS.gene067952:CDS |
| CAACCTTAACCTAACAGCAA+CGG | 0.647550 | 8.3:-33096779 | MS.gene067952:CDS |
| GGTGGTGTAACATCCTCAGA+AGG | 0.651845 | 8.3:+33093953 | None:intergenic |
| GTTGTGTTGCTCCTCCACCA+AGG | 0.675542 | 8.3:+33095991 | None:intergenic |
| AAAGCAGCAGAAGCAAGACG+AGG | 0.678632 | 8.3:+33096673 | None:intergenic |
| ATTTGCTCTTCCAACAACAG+TGG | 0.700274 | 8.3:+33096510 | None:intergenic |
| CTCACAAGAAGAAAACCAGT+AGG | 0.723236 | 8.3:+33096601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATGAATAAATT+TGG | + | chr8.3:33094521-33094540 | None:intergenic | 10.0% |
| !!! | AAATTTGTTCATATTAAAAT+TGG | + | chr8.3:33094614-33094633 | None:intergenic | 10.0% |
| !!! | TAAACTTTTAACTTTTTTTA+AGG | - | chr8.3:33094410-33094429 | MS.gene067952:intron | 10.0% |
| !! | ATATATTAAGAATAATGGTA+AGG | + | chr8.3:33096658-33096677 | None:intergenic | 15.0% |
| !! | GGAAAATATATTAAGAATAA+TGG | + | chr8.3:33096663-33096682 | None:intergenic | 15.0% |
| !! | TTAAAAGAATGAAAAATGAA+TGG | + | chr8.3:33095459-33095478 | None:intergenic | 15.0% |
| !!! | AATATGAACAAATTTTATCA+AGG | - | chr8.3:33094619-33094638 | MS.gene067952:intron | 15.0% |
| !!! | CTTTTTTTAAGGTTTAAATA+TGG | - | chr8.3:33094421-33094440 | MS.gene067952:intron | 15.0% |
| !!! | GCATTTTCTATTTTAATATT+TGG | - | chr8.3:33094944-33094963 | MS.gene067952:intron | 15.0% |
| !! | AAAATCGTTCAAAATTGTTT+AGG | - | chr8.3:33096292-33096311 | MS.gene067952:intron | 20.0% |
| !! | AATAAAACTCATAACACTTA+AGG | - | chr8.3:33095576-33095595 | MS.gene067952:CDS | 20.0% |
| !! | ATGATAGTTTCTAACAAATT+AGG | + | chr8.3:33096185-33096204 | None:intergenic | 20.0% |
| !! | CAATATGAATAAATTTGGTA+GGG | + | chr8.3:33094516-33094535 | None:intergenic | 20.0% |
| !! | TAAAAGAACCACAAATTTAA+TGG | - | chr8.3:33096159-33096178 | MS.gene067952:intron | 20.0% |
| !! | TCAATATGAATAAATTTGGT+AGG | + | chr8.3:33094517-33094536 | None:intergenic | 20.0% |
| !! | TCCAAATTTCTCTTATAAAT+AGG | + | chr8.3:33096334-33096353 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr8.3:33096330-33096349 | MS.gene067952:intron | 20.0% |
| !! | TGGTTTATTATCTGATTTAA+TGG | - | chr8.3:33095234-33095253 | MS.gene067952:intron | 20.0% |
| !!! | ATTGGTCTTTATAATATTCA+TGG | + | chr8.3:33094596-33094615 | None:intergenic | 20.0% |
| !!! | CCAAAATTTCTCTTTTAAAT+AGG | - | chr8.3:33096413-33096432 | MS.gene067952:intron | 20.0% |
| !!! | CCTATTTAAAAGAGAAATTT+TGG | + | chr8.3:33096416-33096435 | None:intergenic | 20.0% |
| !!! | CTTAATATATTTTCCACAAT+GGG | - | chr8.3:33096668-33096687 | MS.gene067952:CDS | 20.0% |
| !!! | TCTTAATATATTTTCCACAA+TGG | - | chr8.3:33096667-33096686 | MS.gene067952:CDS | 20.0% |
| !!! | TGTGGTTCTTTTATTTATTA+AGG | + | chr8.3:33096152-33096171 | None:intergenic | 20.0% |
| !!! | TTAATATATTTTCCACAATG+GGG | - | chr8.3:33096669-33096688 | MS.gene067952:CDS | 20.0% |
| !!! | TTATGAGTTTTATTGAATCT+GGG | + | chr8.3:33095570-33095589 | None:intergenic | 20.0% |
| !!! | TTTTATGGTATTGAATCTTT+TGG | - | chr8.3:33095671-33095690 | MS.gene067952:CDS | 20.0% |
| ! | AAATTAGGCCATTAAATTTG+TGG | + | chr8.3:33096170-33096189 | None:intergenic | 25.0% |
| ! | ATCTCAAAAGTAATTTACCA+TGG | - | chr8.3:33095031-33095050 | MS.gene067952:intron | 25.0% |
| ! | ATGGTGTGTTAAATTATAGA+GGG | - | chr8.3:33095050-33095069 | MS.gene067952:intron | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | chr8.3:33096329-33096348 | None:intergenic | 25.0% |
| ! | CAAAAAGTTGTGATATTGTT+TGG | - | chr8.3:33095756-33095775 | MS.gene067952:CDS | 25.0% |
| ! | GAAAATTGAACATTTCAACT+AGG | - | chr8.3:33096832-33096851 | MS.gene067952:CDS | 25.0% |
| ! | TAAACTAACTATTGATCGAA+TGG | + | chr8.3:33096026-33096045 | None:intergenic | 25.0% |
| ! | TATCATAGCTTAAAGAAATC+AGG | - | chr8.3:33094989-33095008 | MS.gene067952:intron | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | - | chr8.3:33096354-33096373 | MS.gene067952:intron | 25.0% |
| ! | TGAAAGAAAAACTTGTAACA+CGG | - | chr8.3:33096267-33096286 | MS.gene067952:intron | 25.0% |
| ! | TTAACATATGCAACTATTTC+AGG | - | chr8.3:33096493-33096512 | MS.gene067952:intron | 25.0% |
| !! | ATCCTTTGAAGAAAATTAGT+TGG | + | chr8.3:33096578-33096597 | None:intergenic | 25.0% |
| !! | ATTTCTCTTTTAAATAGGAC+CGG | - | chr8.3:33096418-33096437 | MS.gene067952:intron | 25.0% |
| !! | TAAAAAATGTTTTCTCAGGT+GGG | - | chr8.3:33094786-33094805 | MS.gene067952:intron | 25.0% |
| !! | TCAAGATTTTCAAAAGAAAG+AGG | - | chr8.3:33096597-33096616 | MS.gene067952:CDS | 25.0% |
| !! | TCCTTTGAAGAAAATTAGTT+GGG | + | chr8.3:33096577-33096596 | None:intergenic | 25.0% |
| !! | TGCTTAAAAAATGTTTTCTC+AGG | - | chr8.3:33094782-33094801 | MS.gene067952:intron | 25.0% |
| !! | TTAAAAAATGTTTTCTCAGG+TGG | - | chr8.3:33094785-33094804 | MS.gene067952:intron | 25.0% |
| !! | TTGACTTATGGTTATTGTTT+TGG | - | chr8.3:33095085-33095104 | MS.gene067952:intron | 25.0% |
| !! | TTTTCACTGATACAAGATTT+TGG | - | chr8.3:33094857-33094876 | MS.gene067952:intron | 25.0% |
| !!! | GGTTCTTTTATTTATTAAGG+TGG | + | chr8.3:33096149-33096168 | None:intergenic | 25.0% |
| !!! | GTTATGAGTTTTATTGAATC+TGG | + | chr8.3:33095571-33095590 | None:intergenic | 25.0% |
| !!! | TGGTCTTATACAATTTTTTG+TGG | - | chr8.3:33095691-33095710 | MS.gene067952:CDS | 25.0% |
| !!! | TTTGATTTGCTGAAAAATGA+AGG | + | chr8.3:33095891-33095910 | None:intergenic | 25.0% |
| AAACTGAGTAGAAACAAAAG+TGG | + | chr8.3:33094256-33094275 | None:intergenic | 30.0% | |
| AAATAGAACAGCACAACATA+AGG | - | chr8.3:33095628-33095647 | MS.gene067952:CDS | 30.0% | |
| AAGATTACTATATGGCTGAA+TGG | - | chr8.3:33096733-33096752 | MS.gene067952:CDS | 30.0% | |
| AAGCTATGATAATTACCATC+TGG | + | chr8.3:33094980-33094999 | None:intergenic | 30.0% | |
| AGAAAGAGGAATAACTCTAA+TGG | - | chr8.3:33096611-33096630 | MS.gene067952:CDS | 30.0% | |
| CACAGAAGAAGATTACTATA+TGG | - | chr8.3:33096725-33096744 | MS.gene067952:CDS | 30.0% | |
| CATGGTGTGTTAAATTATAG+AGG | - | chr8.3:33095049-33095068 | MS.gene067952:intron | 30.0% | |
| CTCTATAATTTAACACACCA+TGG | + | chr8.3:33095051-33095070 | None:intergenic | 30.0% | |
| GAAAGAGGAATAACTCTAAT+GGG | - | chr8.3:33096612-33096631 | MS.gene067952:CDS | 30.0% | |
| GATAATAGTAGAAGTGAAAG+AGG | - | chr8.3:33096807-33096826 | MS.gene067952:CDS | 30.0% | |
| GATTTAATGGCTAAGAGATT+TGG | - | chr8.3:33095247-33095266 | MS.gene067952:intron | 30.0% | |
| TAAGGTGCATATTATGATCA+TGG | + | chr8.3:33096640-33096659 | None:intergenic | 30.0% | |
| TCAAAGATTGCAAAAATGCT+GGG | + | chr8.3:33094922-33094941 | None:intergenic | 30.0% | |
| TCATTCTTATGAGACTTGAT+TGG | - | chr8.3:33096221-33096240 | MS.gene067952:intron | 30.0% | |
| TCTATTATCAATTCTCCTAC+TGG | - | chr8.3:33094192-33094211 | MS.gene067952:CDS | 30.0% | |
| TGAAAAATGAAGGATAGGAT+TGG | + | chr8.3:33095881-33095900 | None:intergenic | 30.0% | |
| TGTAAAACTGTTTCAAAGAC+AGG | + | chr8.3:33095831-33095850 | None:intergenic | 30.0% | |
| TTCAGCTATGATATTGTCAA+TGG | + | chr8.3:33095122-33095141 | None:intergenic | 30.0% | |
| TTTGCTGAAAAATGAAGGAT+AGG | + | chr8.3:33095886-33095905 | None:intergenic | 30.0% | |
| ! | ACCCAACTAATTTTCTTCAA+AGG | - | chr8.3:33096573-33096592 | MS.gene067952:CDS | 30.0% |
| ! | ATATCACAACTTTTTGTCAC+AGG | + | chr8.3:33095752-33095771 | None:intergenic | 30.0% |
| ! | GAGTACGTGACAAATTTTTA+TGG | - | chr8.3:33095656-33095675 | MS.gene067952:CDS | 30.0% |
| !!! | CTTTTGTTTCTACTCAGTTT+TGG | - | chr8.3:33094256-33094275 | MS.gene067952:CDS | 30.0% |
| !!! | GGTGTTTTTTGTGTGATTTT+GGG | - | chr8.3:33095316-33095335 | MS.gene067952:intron | 30.0% |
| !!! | TGGATTTTAGCTTTGACTTA+TGG | - | chr8.3:33095073-33095092 | MS.gene067952:intron | 30.0% |
| !!! | TGGTGTTTTTTGTGTGATTT+TGG | - | chr8.3:33095315-33095334 | MS.gene067952:intron | 30.0% |
| !!! | TTATGGTTATTGTTTTGGTG+TGG | - | chr8.3:33095090-33095109 | MS.gene067952:intron | 30.0% |
| AATAGTAGAAGTGAAAGAGG+TGG | - | chr8.3:33096810-33096829 | MS.gene067952:CDS | 35.0% | |
| ACATACCTTCTTGAGACAAA+AGG | + | chr8.3:33095433-33095452 | None:intergenic | 35.0% | |
| AGTGCTCATTACATTGTCAA+TGG | - | chr8.3:33096101-33096120 | MS.gene067952:intron | 35.0% | |
| ATAGAAGTGAAGTAAACAGC+AGG | + | chr8.3:33094177-33094196 | None:intergenic | 35.0% | |
| ATGTTATGTTATACTCCCTC+CGG | + | chr8.3:33096440-33096459 | None:intergenic | 35.0% | |
| GTCAAAGATTGCAAAAATGC+TGG | + | chr8.3:33094923-33094942 | None:intergenic | 35.0% | |
| GTGTGTTAAATTATAGAGGG+TGG | - | chr8.3:33095053-33095072 | MS.gene067952:intron | 35.0% | |
| TCATTTCTCAAAGACCAACT+AGG | + | chr8.3:33096250-33096269 | None:intergenic | 35.0% | |
| TGCTAGCATTTCATCTATCA+TGG | - | chr8.3:33093941-33093960 | MS.gene067952:CDS | 35.0% | |
| TGTATCAGTGAAAACACAAG+TGG | + | chr8.3:33094851-33094870 | None:intergenic | 35.0% | |
| TTTGGTCAAGATTTACCAGA+TGG | - | chr8.3:33094962-33094981 | MS.gene067952:intron | 35.0% | |
| TTTGTGGATTTGTCAAACGT+TGG | - | chr8.3:33095291-33095310 | MS.gene067952:intron | 35.0% | |
| ! | ATATATTTTCCACAATGGGG+TGG | - | chr8.3:33096672-33096691 | MS.gene067952:CDS | 35.0% |
| ! | ATGTTTTCTACCACTGTTGT+TGG | - | chr8.3:33094288-33094307 | MS.gene067952:CDS | 35.0% |
| ! | GGTGGTTAATCTCATTTTCA+AGG | + | chr8.3:33096131-33096150 | None:intergenic | 35.0% |
| ! | GTTTTTGCCAGAATTGCAAT+GGG | - | chr8.3:33094090-33094109 | MS.gene067952:CDS | 35.0% |
| ! | TCTGTGACTTTTGTAGATGA+TGG | + | chr8.3:33096711-33096730 | None:intergenic | 35.0% |
| ! | TTAAGGTTGTCACGGATTAT+AGG | + | chr8.3:33094018-33094037 | None:intergenic | 35.0% |
| ! | TTGTTCCTTTTGTCTCAAGA+AGG | - | chr8.3:33095425-33095444 | MS.gene067952:CDS | 35.0% |
| !! | TGTTTTTGCCAGAATTGCAA+TGG | - | chr8.3:33094089-33094108 | MS.gene067952:CDS | 35.0% |
| !!! | AATGTTTTTTCTAGACCAGG+AGG | - | chr8.3:33095211-33095230 | MS.gene067952:intron | 35.0% |
| !!! | GCTAATGTTTTTTCTAGACC+AGG | - | chr8.3:33095208-33095227 | MS.gene067952:intron | 35.0% |
| AACCTAACAGCAACGGATAT+AGG | - | chr8.3:33094036-33094055 | MS.gene067952:CDS | 40.0% | |
| AACCTTAAACTTCACACTGC+TGG | - | chr8.3:33095160-33095179 | MS.gene067952:intron | 40.0% | |
| AATGGGAACTGCTTGTGATT+TGG | - | chr8.3:33094107-33094126 | MS.gene067952:CDS | 40.0% | |
| ACAGGACAAACTGAAGACAA+GGG | + | chr8.3:33095813-33095832 | None:intergenic | 40.0% | |
| ACTGTTGTTGGAAGAGCAAA+TGG | - | chr8.3:33094300-33094319 | MS.gene067952:intron | 40.0% | |
| ATTTGCTCTTCCAACAACAG+TGG | + | chr8.3:33094301-33094320 | None:intergenic | 40.0% | |
| CAACCTTAACCTAACAGCAA+CGG | - | chr8.3:33094029-33094048 | MS.gene067952:CDS | 40.0% | |
| CATTCCTGATATGACTCCTA+AGG | + | chr8.3:33096520-33096539 | None:intergenic | 40.0% | |
| CTCACAAGAAGAAAACCAGT+AGG | + | chr8.3:33094210-33094229 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr8.3:33096325-33096344 | None:intergenic | 40.0% | |
| CTGTTAGGTTAAGGTTGTCA+CGG | + | chr8.3:33094026-33094045 | None:intergenic | 40.0% | |
| CTTCTTGTGAGGTTCTTTAC+TGG | - | chr8.3:33094219-33094238 | MS.gene067952:CDS | 40.0% | |
| GCTCAACAAAATTCACTGCA+TGG | - | chr8.3:33094879-33094898 | MS.gene067952:intron | 40.0% | |
| TATGGCTGAATGGAACTCAA+AGG | - | chr8.3:33096743-33096762 | MS.gene067952:CDS | 40.0% | |
| TCAGATAATAAACCACCTCC+TGG | + | chr8.3:33095229-33095248 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr8.3:33096326-33096345 | None:intergenic | 40.0% | |
| TGAATGGAACTCAAAGGAGA+GGG | - | chr8.3:33096749-33096768 | MS.gene067952:CDS | 40.0% | |
| TTCCAGCAGTGTGAAGTTTA+AGG | + | chr8.3:33095165-33095184 | None:intergenic | 40.0% | |
| TTGGAATGAGGGGTAGATTA+TGG | - | chr8.3:33095266-33095285 | MS.gene067952:intron | 40.0% | |
| ! | AAAATGTTTTCTCAGGTGGG+TGG | - | chr8.3:33094789-33094808 | MS.gene067952:intron | 40.0% |
| ! | AAATGTTTTCTCAGGTGGGT+GGG | - | chr8.3:33094790-33094809 | MS.gene067952:intron | 40.0% |
| ! | CTCTTTTAAATAGGACCGGA+GGG | - | chr8.3:33096422-33096441 | MS.gene067952:intron | 40.0% |
| ! | GCTAAGAGATTTGGAATGAG+GGG | - | chr8.3:33095256-33095275 | MS.gene067952:intron | 40.0% |
| ! | GGAATCATTGCTGCAAGTTT+TGG | - | chr8.3:33095181-33095200 | MS.gene067952:intron | 40.0% |
| ! | GGCTAAGAGATTTGGAATGA+GGG | - | chr8.3:33095255-33095274 | MS.gene067952:intron | 40.0% |
| ! | GTTTTTGTTCAAGCTGCTTG+TGG | - | chr8.3:33095388-33095407 | MS.gene067952:CDS | 40.0% |
| ! | TATCCGTTGCTGTTAGGTTA+AGG | + | chr8.3:33094035-33094054 | None:intergenic | 40.0% |
| ! | TCACGGATTATAGGAACAAG+TGG | + | chr8.3:33094009-33094028 | None:intergenic | 40.0% |
| ! | TCTCTTTTAAATAGGACCGG+AGG | - | chr8.3:33096421-33096440 | MS.gene067952:intron | 40.0% |
| ! | TGCAACTATTTCAGGTCCTT+AGG | - | chr8.3:33096501-33096520 | MS.gene067952:CDS | 40.0% |
| ! | TGGCTAAGAGATTTGGAATG+AGG | - | chr8.3:33095254-33095273 | MS.gene067952:intron | 40.0% |
| ! | TTCCTATATCCGTTGCTGTT+AGG | + | chr8.3:33094041-33094060 | None:intergenic | 40.0% |
| !!! | CATTGCTGCAAGTTTTGGTT+TGG | - | chr8.3:33095186-33095205 | MS.gene067952:intron | 40.0% |
| !!! | CTACTGGTTTTCTTCTTGTG+AGG | - | chr8.3:33094208-33094227 | MS.gene067952:CDS | 40.0% |
| !!! | TGGGTACGAATTTTGATTCG+AGG | + | chr8.3:33095551-33095570 | None:intergenic | 40.0% |
| !!! | TGTGTGATTTTGGGACTTGT+TGG | - | chr8.3:33095325-33095344 | MS.gene067952:intron | 40.0% |
| AAAAACATGCCACCCCATTG+TGG | + | chr8.3:33096684-33096703 | None:intergenic | 45.0% | |
| AACTCAAAGGAGAGGGAGAA+AGG | - | chr8.3:33096756-33096775 | MS.gene067952:CDS | 45.0% | |
| AGCAGTTCCCATTGCAATTC+TGG | + | chr8.3:33094100-33094119 | None:intergenic | 45.0% | |
| AGGTCCTTAGGAGTCATATC+AGG | - | chr8.3:33096513-33096532 | MS.gene067952:CDS | 45.0% | |
| ATATCAGGAATGACAGGAGG+AGG | - | chr8.3:33096528-33096547 | MS.gene067952:CDS | 45.0% | |
| CATTTCAACTAGGCCTTCTG+AGG | - | chr8.3:33096842-33096861 | MS.gene067952:CDS | 45.0% | |
| CTGAATGGAACTCAAAGGAG+AGG | - | chr8.3:33096748-33096767 | MS.gene067952:CDS | 45.0% | |
| GACAGGACAAACTGAAGACA+AGG | + | chr8.3:33095814-33095833 | None:intergenic | 45.0% | |
| GACTTGATTGGAGACCTAGT+TGG | - | chr8.3:33096233-33096252 | MS.gene067952:intron | 45.0% | |
| GCAACGGATATAGGAAATGC+TGG | - | chr8.3:33094045-33094064 | MS.gene067952:CDS | 45.0% | |
| GCTGCTTGTGGAATGACATT+TGG | - | chr8.3:33095400-33095419 | MS.gene067952:CDS | 45.0% | |
| GGAAGAGCAAATGGTTTCTC+AGG | - | chr8.3:33094309-33094328 | MS.gene067952:intron | 45.0% | |
| GGAGTCATATCAGGAATGAC+AGG | - | chr8.3:33096522-33096541 | MS.gene067952:CDS | 45.0% | |
| GGGGTAGATTATGGTGTTTG+TGG | - | chr8.3:33095275-33095294 | MS.gene067952:intron | 45.0% | |
| GTCATATCAGGAATGACAGG+AGG | - | chr8.3:33096525-33096544 | MS.gene067952:CDS | 45.0% | |
| TGGATTTGTCAAACGTTGGC+TGG | - | chr8.3:33095295-33095314 | MS.gene067952:intron | 45.0% | |
| ! | AATGTTTTCTCAGGTGGGTG+GGG | - | chr8.3:33094791-33094810 | MS.gene067952:intron | 45.0% |
| ! | TGTTTAGGATGTACTCCCTC+CGG | - | chr8.3:33096307-33096326 | MS.gene067952:intron | 45.0% |
| !! | GGAACTGCTTGTGATTTGGT+TGG | - | chr8.3:33094111-33094130 | MS.gene067952:CDS | 45.0% |
| !!! | CAATGGGGTGGCATGTTTTT+TGG | - | chr8.3:33096684-33096703 | MS.gene067952:CDS | 45.0% |
| !!! | GTTTTTTCTAGACCAGGAGG+TGG | - | chr8.3:33095214-33095233 | MS.gene067952:intron | 45.0% |
| AAAGCAGCAGAAGCAAGACG+AGG | + | chr8.3:33094138-33094157 | None:intergenic | 50.0% | |
| AGGGAGAAAGGCTCTCATCA+TGG | - | chr8.3:33096768-33096787 | MS.gene067952:CDS | 50.0% | |
| GGTGGTGTAACATCCTCAGA+AGG | + | chr8.3:33096858-33096877 | None:intergenic | 50.0% | |
| !! | GCTGGTGTTGCATCTGTTTC+TGG | - | chr8.3:33094063-33094082 | MS.gene067952:CDS | 50.0% |
| ACAGGAGGAGGAGGAAACGT+TGG | - | chr8.3:33096540-33096559 | MS.gene067952:CDS | 55.0% | |
| TCAGGAATGACAGGAGGAGG+AGG | - | chr8.3:33096531-33096550 | MS.gene067952:CDS | 55.0% | |
| ! | GTTGTGTTGCTCCTCCACCA+AGG | + | chr8.3:33094820-33094839 | None:intergenic | 55.0% |
| TCAGGTGGGTGGGGTAACCT+TGG | - | chr8.3:33094800-33094819 | MS.gene067952:intron | 60.0% | |
| GGGTGGGGTAACCTTGGTGG+AGG | - | chr8.3:33094806-33094825 | MS.gene067952:intron | 65.0% | |
| GGTGGGTGGGGTAACCTTGG+TGG | - | chr8.3:33094803-33094822 | MS.gene067952:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 33093940 | 33096890 | 33093940 | ID=MS.gene067952 |
| chr8.3 | mRNA | 33093940 | 33096890 | 33093940 | ID=MS.gene067952.t1;Parent=MS.gene067952 |
| chr8.3 | exon | 33096500 | 33096890 | 33096500 | ID=MS.gene067952.t1.exon1;Parent=MS.gene067952.t1 |
| chr8.3 | CDS | 33096500 | 33096890 | 33096500 | ID=cds.MS.gene067952.t1;Parent=MS.gene067952.t1 |
| chr8.3 | exon | 33095384 | 33096026 | 33095384 | ID=MS.gene067952.t1.exon2;Parent=MS.gene067952.t1 |
| chr8.3 | CDS | 33095384 | 33096026 | 33095384 | ID=cds.MS.gene067952.t1;Parent=MS.gene067952.t1 |
| chr8.3 | exon | 33093940 | 33094315 | 33093940 | ID=MS.gene067952.t1.exon3;Parent=MS.gene067952.t1 |
| chr8.3 | CDS | 33093940 | 33094315 | 33093940 | ID=cds.MS.gene067952.t1;Parent=MS.gene067952.t1 |
| Gene Sequence |
| Protein sequence |
