Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86241.t1 | AYA42658.1 | 83.2 | 167 | 27 | 1 | 1 | 166 | 62 | 228 | 6.80E-67 | 263.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86241.t1 | Q9FVC1 | 57.5 | 179 | 63 | 2 | 1 | 166 | 62 | 240 | 9.4e-41 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86241.t1 | A0A385LSS4 | 83.2 | 167 | 27 | 1 | 1 | 166 | 62 | 228 | 4.9e-67 | 263.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene86241 | 0.808169 | 3.53E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene86241 | 0.841327 | 5.08E-58 | -1.69E-46 |
| MS.gene049711 | MS.gene86241 | 0.806053 | 9.91E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene86241 | 0.808198 | 3.48E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene86241 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene86241 | 0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene86241 | 0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene86241 | 0.817274 | 3.59E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene86241 | 0.818148 | 2.28E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene86241 | 0.800057 | 1.72E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene86241 | 0.813555 | 2.41E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene86241 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene86241 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene86241 | 0.807885 | 4.06E-50 | -1.69E-46 |
| MS.gene056638 | MS.gene86241 | 0.81878 | 1.64E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene86241 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene86241 | 0.804366 | 2.24E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene86241 | 0.806926 | 6.49E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene86241 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene86241 | 0.81047 | 1.13E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene86241 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene060697 | MS.gene86241 | 0.8097 | 1.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55353 | MS.gene86241 | PPI |
| MS.gene010053 | MS.gene86241 | PPI |
| MS.gene78610 | MS.gene86241 | PPI |
| MS.gene53154 | MS.gene86241 | PPI |
| MS.gene061528 | MS.gene86241 | PPI |
| MS.gene85927 | MS.gene86241 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86241.t1 | MTR_5g032520 | 92.771 | 166 | 12 | 0 | 1 | 166 | 62 | 227 | 9.48e-110 | 312 |
| MS.gene86241.t1 | MTR_5g032150 | 80.838 | 167 | 31 | 1 | 1 | 166 | 1 | 167 | 1.74e-92 | 266 |
| MS.gene86241.t1 | MTR_5g032150 | 80.838 | 167 | 31 | 1 | 1 | 166 | 62 | 228 | 2.54e-92 | 268 |
| MS.gene86241.t1 | MTR_5g066180 | 46.108 | 167 | 82 | 5 | 1 | 164 | 62 | 223 | 7.07e-33 | 116 |
| MS.gene86241.t1 | MTR_4g093970 | 39.157 | 166 | 83 | 3 | 1 | 164 | 88 | 237 | 4.41e-24 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86241.t1 | AT2G22540 | 63.687 | 179 | 52 | 2 | 1 | 166 | 57 | 235 | 3.64e-69 | 209 |
| MS.gene86241.t1 | AT2G22540 | 63.687 | 179 | 52 | 2 | 1 | 166 | 62 | 240 | 5.65e-69 | 209 |
| MS.gene86241.t1 | AT2G22540 | 63.687 | 179 | 52 | 2 | 1 | 166 | 62 | 240 | 5.65e-69 | 209 |
| MS.gene86241.t1 | AT4G24540 | 50.595 | 168 | 66 | 7 | 1 | 163 | 62 | 217 | 8.22e-38 | 129 |
Find 36 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGACACCTCACTCAAAT+TGG | 0.183454 | 5.1:+23060189 | MS.gene86241:CDS |
| CCCTCATCTGCCTTAATTGA+TGG | 0.212199 | 5.1:-23058082 | None:intergenic |
| TTGGAGAAGTCTCTTGAAAC+TGG | 0.275036 | 5.1:+23058146 | MS.gene86241:CDS |
| CTCAGAAAAGCCATCAATTA+AGG | 0.306084 | 5.1:+23058072 | MS.gene86241:CDS |
| TCTGGAAGAATTACAACAAT+TGG | 0.380411 | 5.1:+23058127 | MS.gene86241:CDS |
| TCAGACACCTCACTCAAATT+GGG | 0.388618 | 5.1:+23060190 | MS.gene86241:CDS |
| AGAACCGTCGCTAGATTTGC+AGG | 0.407377 | 5.1:+23057186 | MS.gene86241:CDS |
| ACCTGCAGGCTTCCATATGC+TGG | 0.416131 | 5.1:+23061211 | MS.gene86241:intron |
| ACCTACTATCAGCCAGCATA+TGG | 0.423697 | 5.1:-23061223 | None:intergenic |
| TAGGTGACGGACATGTTTAA+TGG | 0.427034 | 5.1:+23060055 | MS.gene86241:intron |
| TCAGGGAGAGAAGATTATGA+TGG | 0.463773 | 5.1:+23058270 | MS.gene86241:intron |
| ATTCTTCCAGACTCAAACCT+TGG | 0.464341 | 5.1:-23058115 | None:intergenic |
| AGATCTCCAAGGTTTGAGTC+TGG | 0.468779 | 5.1:+23058109 | MS.gene86241:CDS |
| TACTGAAGAAGGTCAATCTT+CGG | 0.482196 | 5.1:+23060114 | MS.gene86241:CDS |
| AAGTCTCTTGAAACTGGGTT+GGG | 0.490075 | 5.1:+23058152 | MS.gene86241:CDS |
| ATGTTTAATGGTAAAAGTCT+TGG | 0.495486 | 5.1:+23060067 | MS.gene86241:CDS |
| GAAGTCTCTTGAAACTGGGT+TGG | 0.501534 | 5.1:+23058151 | MS.gene86241:CDS |
| TTTAATGGTAAAAGTCTTGG+AGG | 0.517414 | 5.1:+23060070 | MS.gene86241:CDS |
| GCCATCAATTAAGGCAGATG+AGG | 0.554868 | 5.1:+23058081 | MS.gene86241:CDS |
| CCATCAATTAAGGCAGATGA+GGG | 0.559358 | 5.1:+23058082 | MS.gene86241:CDS |
| GATCAATGAGCTACAAACAA+AGG | 0.563866 | 5.1:+23058294 | MS.gene86241:CDS |
| GAGAACGTGGTTACTGAAGA+AGG | 0.566235 | 5.1:+23060103 | MS.gene86241:CDS |
| AGACCTTGGTTTCAATTACA+CGG | 0.567331 | 5.1:-23058175 | None:intergenic |
| TGGAGAAGTCTCTTGAAACT+GGG | 0.575456 | 5.1:+23058147 | MS.gene86241:CDS |
| CAACTCTACTAGTCCTCCAC+AGG | 0.580687 | 5.1:+23060156 | MS.gene86241:CDS |
| CTTGCAGGGAAGGCAACTGA+TGG | 0.581631 | 5.1:+23059784 | MS.gene86241:intron |
| GAGCTCTCATAGTCCTGTGG+AGG | 0.606403 | 5.1:-23060169 | None:intergenic |
| CAACTGTTCTAGACTGAGCA+AGG | 0.612785 | 5.1:+23058043 | MS.gene86241:CDS |
| TCTGAGCTCTCATAGTCCTG+TGG | 0.617975 | 5.1:-23060172 | None:intergenic |
| GGGCCGTGTAATTGAAACCA+AGG | 0.647098 | 5.1:+23058172 | MS.gene86241:CDS |
| CAGACACCTCACTCAAATTG+GGG | 0.648977 | 5.1:+23060191 | MS.gene86241:CDS |
| AGGAGTTGAATATGAGAACG+TGG | 0.655871 | 5.1:+23060090 | MS.gene86241:CDS |
| AACTAACCCCAATTTGAGTG+AGG | 0.674292 | 5.1:-23060197 | None:intergenic |
| CCAACCTGCAAATCTAGCGA+CGG | 0.687238 | 5.1:-23057190 | None:intergenic |
| ATGAGGGGAGAAGATCTCCA+AGG | 0.693273 | 5.1:+23058098 | MS.gene86241:CDS |
| CATCAATTAAGGCAGATGAG+GGG | 0.712596 | 5.1:+23058083 | MS.gene86241:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATAGAAATTTAAT+AGG | - | chr5.1:23058744-23058763 | None:intergenic | 10.0% |
| !! | ACACAATATTTATATTTATA+AGG | + | chr5.1:23058829-23058848 | MS.gene86241:intron | 10.0% |
| !! | GATAATTTATTATTATAATG+TGG | + | chr5.1:23060488-23060507 | MS.gene86241:intron | 10.0% |
| !! | TACTTTATATATACTTAATT+AGG | - | chr5.1:23058780-23058799 | None:intergenic | 10.0% |
| !! | TTAAATAATTACAAAATCTT+TGG | + | chr5.1:23057898-23057917 | MS.gene86241:intron | 10.0% |
| !!! | AAATTATCTTCTTTTATTTT+TGG | - | chr5.1:23060476-23060495 | None:intergenic | 10.0% |
| !!! | AATTATCTTCTTTTATTTTT+GGG | - | chr5.1:23060475-23060494 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTTG+AGG | - | chr5.1:23060951-23060970 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTGCATATA+TGG | + | chr5.1:23059110-23059129 | MS.gene86241:intron | 10.0% |
| !!! | TTTTAAAAAGTAATGATTTA+GGG | - | chr5.1:23061110-23061129 | None:intergenic | 10.0% |
| !! | ATTATTTAAACAACTAATGT+CGG | - | chr5.1:23057887-23057906 | None:intergenic | 15.0% |
| !! | ATTTAGTGACAAAATTATAA+AGG | - | chr5.1:23060724-23060743 | None:intergenic | 15.0% |
| !! | TATGTAAAAATGTAAAATTG+AGG | + | chr5.1:23060515-23060534 | MS.gene86241:intron | 15.0% |
| !! | TTTAGTGACAAAATTATAAA+GGG | - | chr5.1:23060723-23060742 | None:intergenic | 15.0% |
| !!! | TATAAATATTGTGTGTTTTT+CGG | - | chr5.1:23058823-23058842 | None:intergenic | 15.0% |
| !!! | TATATACTTAATTAGGATTT+TGG | - | chr5.1:23058773-23058792 | None:intergenic | 15.0% |
| !!! | TGTGTACAATAATTTTTATA+TGG | + | chr5.1:23057939-23057958 | MS.gene86241:intron | 15.0% |
| !! | AAAATTAGTGAAATTTAGAG+AGG | + | chr5.1:23060684-23060703 | MS.gene86241:intron | 20.0% |
| !! | AAAGAAAATCTTGAATAGAT+TGG | + | chr5.1:23057326-23057345 | MS.gene86241:intron | 20.0% |
| !! | AAAGTAGAGAAAAAATAATG+TGG | + | chr5.1:23058495-23058514 | MS.gene86241:intron | 20.0% |
| !! | AAATGTCACATTATATGTTT+GGG | - | chr5.1:23060386-23060405 | None:intergenic | 20.0% |
| !! | AAATTAGTGAAATTTAGAGA+GGG | + | chr5.1:23060685-23060704 | MS.gene86241:intron | 20.0% |
| !! | ACTAAACTATTATTTGATAG+AGG | - | chr5.1:23057563-23057582 | None:intergenic | 20.0% |
| !! | AGACATAGAAAAATGTTATT+TGG | + | chr5.1:23058437-23058456 | MS.gene86241:intron | 20.0% |
| !! | CCGTCATTTAAAAAAAAAAT+GGG | - | chr5.1:23060564-23060583 | None:intergenic | 20.0% |
| !! | GAAAGATTCCATATTATATA+TGG | + | chr5.1:23057632-23057651 | MS.gene86241:intron | 20.0% |
| !! | TAATTACAAAATCTTTGGAT+AGG | + | chr5.1:23057903-23057922 | MS.gene86241:intron | 20.0% |
| !! | TATAAAATCTGGATATAGAA+AGG | - | chr5.1:23059154-23059173 | None:intergenic | 20.0% |
| !! | TATTAGGAAAAGCAAAATTA+AGG | - | chr5.1:23060801-23060820 | None:intergenic | 20.0% |
| !! | TGAAACTATATATAAGGAAA+AGG | + | chr5.1:23058631-23058650 | MS.gene86241:intron | 20.0% |
| !! | TGCACATACTAAAATTAAAT+GGG | - | chr5.1:23060591-23060610 | None:intergenic | 20.0% |
| !! | TGTGATTGAAACTATATATA+AGG | + | chr5.1:23058625-23058644 | MS.gene86241:intron | 20.0% |
| !! | TTAAATTTAAGCATCAAACA+TGG | - | chr5.1:23058002-23058021 | None:intergenic | 20.0% |
| !! | TTGCACATACTAAAATTAAA+TGG | - | chr5.1:23060592-23060611 | None:intergenic | 20.0% |
| !! | TTTAATAGTGAAAAGAAGAA+AGG | + | chr5.1:23060440-23060459 | MS.gene86241:intron | 20.0% |
| !! | TTTGTTAAATAGACACTATT+AGG | - | chr5.1:23060817-23060836 | None:intergenic | 20.0% |
| !!! | AAATAATAAGACCTTTTCAT+AGG | + | chr5.1:23057687-23057706 | MS.gene86241:intron | 20.0% |
| !!! | AATAATAAGACCTTTTCATA+GGG | + | chr5.1:23057688-23057707 | MS.gene86241:intron | 20.0% |
| !!! | ATGTGATGTTATATATGTTT+TGG | - | chr5.1:23059544-23059563 | None:intergenic | 20.0% |
| !!! | ATGTTTAGTCATTTTTTAGT+GGG | - | chr5.1:23060987-23061006 | None:intergenic | 20.0% |
| !!! | ATTTTCACAGCTTTTAAAAT+AGG | + | chr5.1:23059212-23059231 | MS.gene86241:intron | 20.0% |
| !!! | ATTTTTCTATGTCTAAACAA+CGG | - | chr5.1:23058431-23058450 | None:intergenic | 20.0% |
| !!! | CCATTTTTTTTTTAAATGAC+GGG | + | chr5.1:23060562-23060581 | MS.gene86241:intron | 20.0% |
| !!! | CCCATTTTTTTTTTAAATGA+CGG | + | chr5.1:23060561-23060580 | MS.gene86241:intron | 20.0% |
| !!! | TCTGTTAGTATTTTTACTAA+AGG | - | chr5.1:23057792-23057811 | None:intergenic | 20.0% |
| !!! | TCTTTTCACTATTAAAGTTT+TGG | - | chr5.1:23060436-23060455 | None:intergenic | 20.0% |
| !!! | TTTTGTCACATATCATTATT+AGG | - | chr5.1:23059920-23059939 | None:intergenic | 20.0% |
| ! | AACTAAATACAATTAGTGGT+GGG | - | chr5.1:23059636-23059655 | None:intergenic | 25.0% |
| ! | ACACAACTAAATACAATTAG+TGG | - | chr5.1:23059640-23059659 | None:intergenic | 25.0% |
| ! | AGAAAAAAAAAGTTTGCATG+AGG | - | chr5.1:23059871-23059890 | None:intergenic | 25.0% |
| ! | ATACTTCATGAGAAAATGTT+GGG | + | chr5.1:23057608-23057627 | MS.gene86241:intron | 25.0% |
| ! | ATGTTTAATGGTAAAAGTCT+TGG | + | chr5.1:23060067-23060086 | MS.gene86241:CDS | 25.0% |
| ! | CAAACATATAATGTGACATT+TGG | + | chr5.1:23060385-23060404 | MS.gene86241:intron | 25.0% |
| ! | CAAATGTCACATTATATGTT+TGG | - | chr5.1:23060387-23060406 | None:intergenic | 25.0% |
| ! | CCAAGTATATAGTAGATATA+TGG | - | chr5.1:23058469-23058488 | None:intergenic | 25.0% |
| ! | CCATATATCTACTATATACT+TGG | + | chr5.1:23058466-23058485 | MS.gene86241:intron | 25.0% |
| ! | CCCGTCATTTAAAAAAAAAA+TGG | - | chr5.1:23060565-23060584 | None:intergenic | 25.0% |
| ! | CTAATTGTATTTAGTTGTGT+TGG | + | chr5.1:23059640-23059659 | MS.gene86241:intron | 25.0% |
| ! | GCGACAAATTAAATTTCATA+GGG | + | chr5.1:23058964-23058983 | MS.gene86241:intron | 25.0% |
| ! | TAAAATCACTTGTATGTGTT+AGG | + | chr5.1:23060036-23060055 | MS.gene86241:intron | 25.0% |
| ! | TAACAAAGGACATTGTATAT+AGG | + | chr5.1:23059296-23059315 | MS.gene86241:intron | 25.0% |
| ! | TGAAACATTTCTCATAGTTT+CGG | + | chr5.1:23057962-23057981 | MS.gene86241:intron | 25.0% |
| !! | AAAACATCTTTCGAATTTTC+AGG | + | chr5.1:23058252-23058271 | MS.gene86241:intron | 25.0% |
| !! | AAACATCTTTCGAATTTTCA+GGG | + | chr5.1:23058253-23058272 | MS.gene86241:intron | 25.0% |
| !! | ATAATAAGACCTTTTCATAG+GGG | + | chr5.1:23057689-23057708 | MS.gene86241:intron | 25.0% |
| !! | TCTATATCCAGATTTTATAG+AGG | + | chr5.1:23059155-23059174 | MS.gene86241:intron | 25.0% |
| !! | TGTCCTTTGTTATGTTATTT+CGG | - | chr5.1:23059288-23059307 | None:intergenic | 25.0% |
| !!! | AACATATGATTTGTGGTTTT+AGG | - | chr5.1:23057475-23057494 | None:intergenic | 25.0% |
| !!! | ATATGTTTTGGTTAGTATGA+TGG | - | chr5.1:23059532-23059551 | None:intergenic | 25.0% |
| !!! | CATGTTTAGTCATTTTTTAG+TGG | - | chr5.1:23060988-23061007 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTGGGTGAAAATT+AGG | - | chr5.1:23060976-23060995 | None:intergenic | 25.0% |
| AAATTACCACACAAAACTCT+TGG | - | chr5.1:23058941-23058960 | None:intergenic | 30.0% | |
| AAGCTAACTGAGTTTCTATT+CGG | - | chr5.1:23057423-23057442 | None:intergenic | 30.0% | |
| AATTACCACACAAAACTCTT+GGG | - | chr5.1:23058940-23058959 | None:intergenic | 30.0% | |
| AGACCGAAATAACATAACAA+AGG | + | chr5.1:23059282-23059301 | MS.gene86241:intron | 30.0% | |
| AGGAAAAGCAAAATTAAGGA+GGG | - | chr5.1:23060797-23060816 | None:intergenic | 30.0% | |
| ATCTTATATCCCCTATGAAA+AGG | - | chr5.1:23057701-23057720 | None:intergenic | 30.0% | |
| CAAATTCGTTGTAACAATCT+AGG | - | chr5.1:23059062-23059081 | None:intergenic | 30.0% | |
| CAACTAAATACAATTAGTGG+TGG | - | chr5.1:23059637-23059656 | None:intergenic | 30.0% | |
| CAAGCAAGCCATATATAATA+TGG | - | chr5.1:23057643-23057662 | None:intergenic | 30.0% | |
| CAATGACACATTGAATGAAA+TGG | - | chr5.1:23060247-23060266 | None:intergenic | 30.0% | |
| CTAAAGGTGATAATTGAACT+CGG | - | chr5.1:23057776-23057795 | None:intergenic | 30.0% | |
| CTCGAAAAACATATGATTTG+TGG | - | chr5.1:23057482-23057501 | None:intergenic | 30.0% | |
| GATACTTCATGAGAAAATGT+TGG | + | chr5.1:23057607-23057626 | MS.gene86241:intron | 30.0% | |
| GGCGACAAATTAAATTTCAT+AGG | + | chr5.1:23058963-23058982 | MS.gene86241:intron | 30.0% | |
| GGGAATCACATAAAGTATAA+AGG | - | chr5.1:23058920-23058939 | None:intergenic | 30.0% | |
| GTATGTGTATGCATATATGT+AGG | - | chr5.1:23058677-23058696 | None:intergenic | 30.0% | |
| TAATGATGTGATGAAAAGTG+AGG | + | chr5.1:23058523-23058542 | MS.gene86241:intron | 30.0% | |
| TAGGAAAAGCAAAATTAAGG+AGG | - | chr5.1:23060798-23060817 | None:intergenic | 30.0% | |
| TAGGGGATATAAGATTGATT+TGG | + | chr5.1:23057706-23057725 | MS.gene86241:intron | 30.0% | |
| TCAATGTCCTCTATAAAATC+TGG | - | chr5.1:23059165-23059184 | None:intergenic | 30.0% | |
| TCCTACTAATTCATCTCAAA+GGG | - | chr5.1:23060319-23060338 | None:intergenic | 30.0% | |
| TCTGGAAGAATTACAACAAT+TGG | + | chr5.1:23058127-23058146 | MS.gene86241:CDS | 30.0% | |
| TGAACTCTAGACTTTACATA+TGG | + | chr5.1:23060349-23060368 | MS.gene86241:intron | 30.0% | |
| TTACAAAATCTTTGGATAGG+AGG | + | chr5.1:23057906-23057925 | MS.gene86241:intron | 30.0% | |
| TTCCTACTAATTCATCTCAA+AGG | - | chr5.1:23060320-23060339 | None:intergenic | 30.0% | |
| TTTAATGGTAAAAGTCTTGG+AGG | + | chr5.1:23060070-23060089 | MS.gene86241:CDS | 30.0% | |
| ! | GATTTAGGGTAAGAAATAAG+AGG | - | chr5.1:23061096-23061115 | None:intergenic | 30.0% |
| ! | GTGTTGGAATATGTGTTATT+CGG | - | chr5.1:23059603-23059622 | None:intergenic | 30.0% |
| ! | TGTTACAACGAATTTGTTCA+TGG | + | chr5.1:23059066-23059085 | MS.gene86241:intron | 30.0% |
| ! | TGTTGGAATATGTGTTATTC+GGG | - | chr5.1:23059602-23059621 | None:intergenic | 30.0% |
| ! | TTTGTTCATGGAGAGAATTT+TGG | + | chr5.1:23059078-23059097 | MS.gene86241:intron | 30.0% |
| !! | AGAGTTTTGTGTGGTAATTT+TGG | + | chr5.1:23058941-23058960 | MS.gene86241:intron | 30.0% |
| !! | ATAAGATTGATTTGGTGGTT+GGG | + | chr5.1:23057714-23057733 | MS.gene86241:intron | 30.0% |
| !! | GAGTTTTGTGTGGTAATTTT+GGG | + | chr5.1:23058942-23058961 | MS.gene86241:intron | 30.0% |
| !! | TATAAGATTGATTTGGTGGT+TGG | + | chr5.1:23057713-23057732 | MS.gene86241:intron | 30.0% |
| !! | TTTTTAGTCATGTAGCTTAG+TGG | + | chr5.1:23060282-23060301 | MS.gene86241:intron | 30.0% |
| !!! | ATCATACATGTCGTTTTAGT+CGG | - | chr5.1:23059820-23059839 | None:intergenic | 30.0% |
| !!! | ATGTTTGGAAGTTGTTTTTG+AGG | - | chr5.1:23059470-23059489 | None:intergenic | 30.0% |
| !!! | TTTTTCGAGTATCCTATGTA+TGG | + | chr5.1:23057493-23057512 | MS.gene86241:intron | 30.0% |
| AACAAGTGGAGTGATAAAGT+TGG | + | chr5.1:23057748-23057767 | MS.gene86241:intron | 35.0% | |
| ACTAACAGTTGTCCATACAT+AGG | - | chr5.1:23057508-23057527 | None:intergenic | 35.0% | |
| AGACCTTGGTTTCAATTACA+CGG | - | chr5.1:23058178-23058197 | None:intergenic | 35.0% | |
| AGAGGTGGAAGGAATAAAAT+TGG | - | chr5.1:23061078-23061097 | None:intergenic | 35.0% | |
| ATGTATGGACAACTGTTAGT+GGG | + | chr5.1:23057508-23057527 | MS.gene86241:intron | 35.0% | |
| CACATATTCCAACACTCATT+CGG | + | chr5.1:23059608-23059627 | MS.gene86241:intron | 35.0% | |
| CTAGACTTTACATATGGCAA+TGG | + | chr5.1:23060355-23060374 | MS.gene86241:intron | 35.0% | |
| CTCAGAAAAGCCATCAATTA+AGG | + | chr5.1:23058072-23058091 | MS.gene86241:CDS | 35.0% | |
| GAAAAATACACATGCAACCT+GGG | - | chr5.1:23060929-23060948 | None:intergenic | 35.0% | |
| GATCAATGAGCTACAAACAA+AGG | + | chr5.1:23058294-23058313 | MS.gene86241:CDS | 35.0% | |
| GATTCAGTTGTGGAAATTCA+AGG | - | chr5.1:23059569-23059588 | None:intergenic | 35.0% | |
| GTAGATAGAATTGAAGACCT+TGG | - | chr5.1:23058192-23058211 | None:intergenic | 35.0% | |
| TACTGAAGAAGGTCAATCTT+CGG | + | chr5.1:23060114-23060133 | MS.gene86241:CDS | 35.0% | |
| TATGTATGGACAACTGTTAG+TGG | + | chr5.1:23057507-23057526 | MS.gene86241:intron | 35.0% | |
| TGAATCACTTATGTGTCTTG+TGG | + | chr5.1:23057234-23057253 | MS.gene86241:intron | 35.0% | |
| TGCATACACATACACAATCT+TGG | + | chr5.1:23058684-23058703 | MS.gene86241:intron | 35.0% | |
| TGCGATCAAGAAATTTGTGA+AGG | + | chr5.1:23060746-23060765 | MS.gene86241:intron | 35.0% | |
| TGTTTGTTTGGATTCAGTTG+TGG | - | chr5.1:23059579-23059598 | None:intergenic | 35.0% | |
| TTAAGGAGGGAAATTAGTGA+CGG | - | chr5.1:23060784-23060803 | None:intergenic | 35.0% | |
| TTAGGGTAAGAAATAAGAGG+TGG | - | chr5.1:23061093-23061112 | None:intergenic | 35.0% | |
| TTTCTATGTCTAAACAACGG+TGG | - | chr5.1:23058428-23058447 | None:intergenic | 35.0% | |
| ! | CGAGTCAAGTTATCTTTTGT+AGG | - | chr5.1:23057400-23057419 | None:intergenic | 35.0% |
| ! | TATTTGCTAACTTTGTACCC+AGG | + | chr5.1:23060909-23060928 | MS.gene86241:intron | 35.0% |
| ! | TTAGTATGATGGTCTTTTGC+AGG | - | chr5.1:23059521-23059540 | None:intergenic | 35.0% |
| !! | ACCCTTTGAGATGAATTAGT+AGG | + | chr5.1:23060315-23060334 | MS.gene86241:intron | 35.0% |
| !! | AGTATCCGAGTCTTATTTGA+AGG | + | chr5.1:23058796-23058815 | MS.gene86241:intron | 35.0% |
| !! | ATTGGTGTTTTTGATGTACG+AGG | - | chr5.1:23059348-23059367 | None:intergenic | 35.0% |
| !! | GGGATATAAGATTGATTTGG+TGG | + | chr5.1:23057709-23057728 | MS.gene86241:intron | 35.0% |
| !! | TAAGATTGATTTGGTGGTTG+GGG | + | chr5.1:23057715-23057734 | MS.gene86241:intron | 35.0% |
| !! | TGGAGGTTTGGATTTGTTTT+CGG | - | chr5.1:23059393-23059412 | None:intergenic | 35.0% |
| !! | TTTGGATTTGTTTTCGGTGT+TGG | - | chr5.1:23059387-23059406 | None:intergenic | 35.0% |
| !!! | AGTTGTTTTTGAGGTCATTC+AGG | - | chr5.1:23059461-23059480 | None:intergenic | 35.0% |
| !!! | TCATACATGTCGTTTTAGTC+GGG | - | chr5.1:23059819-23059838 | None:intergenic | 35.0% |
| AACTAACCCCAATTTGAGTG+AGG | - | chr5.1:23060200-23060219 | None:intergenic | 40.0% | |
| AAGTCTCTTGAAACTGGGTT+GGG | + | chr5.1:23058152-23058171 | MS.gene86241:CDS | 40.0% | |
| AGGAGTTGAATATGAGAACG+TGG | + | chr5.1:23060090-23060109 | MS.gene86241:CDS | 40.0% | |
| ATTCTTCCAGACTCAAACCT+TGG | - | chr5.1:23058118-23058137 | None:intergenic | 40.0% | |
| CACTTGTATGTGTTAGGTGA+CGG | + | chr5.1:23060042-23060061 | MS.gene86241:intron | 40.0% | |
| CATCAATTAAGGCAGATGAG+GGG | + | chr5.1:23058083-23058102 | MS.gene86241:CDS | 40.0% | |
| CCATCAATTAAGGCAGATGA+GGG | + | chr5.1:23058082-23058101 | MS.gene86241:CDS | 40.0% | |
| GAATAGATTGGTACCACTGA+AGG | + | chr5.1:23057338-23057357 | MS.gene86241:intron | 40.0% | |
| GGAAAAATACACATGCAACC+TGG | - | chr5.1:23060930-23060949 | None:intergenic | 40.0% | |
| GGCTTGAATGAGGTCTTTAT+TGG | - | chr5.1:23059366-23059385 | None:intergenic | 40.0% | |
| GGTAAGAAATAAGAGGTGGA+AGG | - | chr5.1:23061089-23061108 | None:intergenic | 40.0% | |
| GTCATTCAGGATGAAGTTTG+AGG | - | chr5.1:23059448-23059467 | None:intergenic | 40.0% | |
| TCAGACACCTCACTCAAATT+GGG | + | chr5.1:23060190-23060209 | MS.gene86241:CDS | 40.0% | |
| TCAGGGAGAGAAGATTATGA+TGG | + | chr5.1:23058270-23058289 | MS.gene86241:intron | 40.0% | |
| TCGGTCCTTCAAATAAGACT+CGG | - | chr5.1:23058804-23058823 | None:intergenic | 40.0% | |
| TGGAGAAGTCTCTTGAAACT+GGG | + | chr5.1:23058147-23058166 | MS.gene86241:CDS | 40.0% | |
| TTAGCTTCTCAAATGTGCGA+GGG | + | chr5.1:23057436-23057455 | MS.gene86241:intron | 40.0% | |
| TTGGAGAAGTCTCTTGAAAC+TGG | + | chr5.1:23058146-23058165 | MS.gene86241:CDS | 40.0% | |
| ! | GTGTTATTCGGGTGTTTGTT+TGG | - | chr5.1:23059591-23059610 | None:intergenic | 40.0% |
| ! | TGGTCTTTTGCAGGAGTTTT+TGG | - | chr5.1:23059512-23059531 | None:intergenic | 40.0% |
| !! | TAGGTGACGGACATGTTTAA+TGG | + | chr5.1:23060055-23060074 | MS.gene86241:intron | 40.0% |
| !! | TATATGGCTTGCTTGCGTTA+AGG | + | chr5.1:23057648-23057667 | MS.gene86241:intron | 40.0% |
| !! | TGATTCCCAAGAGTTTTGTG+TGG | + | chr5.1:23058932-23058951 | MS.gene86241:intron | 40.0% |
| AACAGCAGAAACCACACTTG+AGG | + | chr5.1:23059416-23059435 | MS.gene86241:intron | 45.0% | |
| ACAACTCTCACTGAACTTGC+AGG | + | chr5.1:23059769-23059788 | MS.gene86241:intron | 45.0% | |
| AGATCTCCAAGGTTTGAGTC+TGG | + | chr5.1:23058109-23058128 | MS.gene86241:CDS | 45.0% | |
| CAACTCTCACTGAACTTGCA+GGG | + | chr5.1:23059770-23059789 | MS.gene86241:intron | 45.0% | |
| CAGACACCTCACTCAAATTG+GGG | + | chr5.1:23060191-23060210 | MS.gene86241:CDS | 45.0% | |
| CATGTACTATTTGCACCTGC+AGG | + | chr5.1:23061197-23061216 | MS.gene86241:intron | 45.0% | |
| CCCTCATCTGCCTTAATTGA+TGG | - | chr5.1:23058085-23058104 | None:intergenic | 45.0% | |
| CTCAGACACCTCACTCAAAT+TGG | + | chr5.1:23060189-23060208 | MS.gene86241:CDS | 45.0% | |
| GAAGTCTCTTGAAACTGGGT+TGG | + | chr5.1:23058151-23058170 | MS.gene86241:CDS | 45.0% | |
| GAGAACGTGGTTACTGAAGA+AGG | + | chr5.1:23060103-23060122 | MS.gene86241:CDS | 45.0% | |
| GCCATCAATTAAGGCAGATG+AGG | + | chr5.1:23058081-23058100 | MS.gene86241:CDS | 45.0% | |
| GCGGACGATAGATAGATGTT+TGG | - | chr5.1:23059485-23059504 | None:intergenic | 45.0% | |
| GTGTGGTTTCTGCTGTTATG+TGG | - | chr5.1:23059413-23059432 | None:intergenic | 45.0% | |
| TCTGCTGTTATGTGGAGGTT+TGG | - | chr5.1:23059405-23059424 | None:intergenic | 45.0% | |
| TGGTTTCTGCTGTTATGTGG+AGG | - | chr5.1:23059410-23059429 | None:intergenic | 45.0% | |
| ! | CAACTGTTCTAGACTGAGCA+AGG | + | chr5.1:23058043-23058062 | MS.gene86241:CDS | 45.0% |
| ! | GTTAGCTTCTCAAATGTGCG+AGG | + | chr5.1:23057435-23057454 | MS.gene86241:intron | 45.0% |
| !! | TTTCGGTGTTGGCTTGAATG+AGG | - | chr5.1:23059376-23059395 | None:intergenic | 45.0% |
| !!! | TGCAGGAGTTTTTGGTGTAG+CGG | - | chr5.1:23059504-23059523 | None:intergenic | 45.0% |
| AGAACCGTCGCTAGATTTGC+AGG | + | chr5.1:23057186-23057205 | MS.gene86241:CDS | 50.0% | |
| ATGAGGGGAGAAGATCTCCA+AGG | + | chr5.1:23058098-23058117 | MS.gene86241:CDS | 50.0% | |
| CAACTCTACTAGTCCTCCAC+AGG | + | chr5.1:23060156-23060175 | MS.gene86241:CDS | 50.0% | |
| CCAACCTGCAAATCTAGCGA+CGG | - | chr5.1:23057193-23057212 | None:intergenic | 50.0% | |
| GGGCCGTGTAATTGAAACCA+AGG | + | chr5.1:23058172-23058191 | MS.gene86241:CDS | 50.0% | |
| TCTCACTGAACTTGCAGGGA+AGG | + | chr5.1:23059774-23059793 | MS.gene86241:intron | 50.0% | |
| TCTGAGCTCTCATAGTCCTG+TGG | - | chr5.1:23060175-23060194 | None:intergenic | 50.0% | |
| ! | TGAGGCTTTTGCCTCAAGTG+TGG | - | chr5.1:23059430-23059449 | None:intergenic | 50.0% |
| !! | ACCACTGAAGGTATCTGTGC+TGG | + | chr5.1:23057350-23057369 | MS.gene86241:intron | 50.0% |
| !! | TGAAGGTATCTGTGCTGGCA+TGG | + | chr5.1:23057355-23057374 | MS.gene86241:intron | 50.0% |
| ACCTGCAGGCTTCCATATGC+TGG | + | chr5.1:23061211-23061230 | MS.gene86241:intron | 55.0% | |
| CCGTCGCTAGATTTGCAGGT+TGG | + | chr5.1:23057190-23057209 | MS.gene86241:intron | 55.0% | |
| CTTGCAGGGAAGGCAACTGA+TGG | + | chr5.1:23059784-23059803 | MS.gene86241:intron | 55.0% | |
| GAGCTCTCATAGTCCTGTGG+AGG | - | chr5.1:23060172-23060191 | None:intergenic | 55.0% | |
| GCCAGCACAGATACCTTCAG+TGG | - | chr5.1:23057354-23057373 | None:intergenic | 55.0% | |
| GCTTCTCAAATGTGCGAGGG+TGG | + | chr5.1:23057439-23057458 | MS.gene86241:intron | 55.0% | |
| GGTGGGATCCGAATGAGTGT+TGG | - | chr5.1:23059619-23059638 | None:intergenic | 55.0% | |
| GCCAGCATATGGAAGCCTGC+AGG | - | chr5.1:23061215-23061234 | None:intergenic | 60.0% | |
| GGGGCGCGAGAGCTAACAAG+TGG | + | chr5.1:23057734-23057753 | MS.gene86241:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 23057130 | 23061237 | 23057130 | ID=MS.gene86241 |
| chr5.1 | mRNA | 23057130 | 23061237 | 23057130 | ID=MS.gene86241.t1;Parent=MS.gene86241 |
| chr5.1 | exon | 23057130 | 23057207 | 23057130 | ID=MS.gene86241.t1.exon1;Parent=MS.gene86241.t1 |
| chr5.1 | CDS | 23057130 | 23057207 | 23057130 | ID=cds.MS.gene86241.t1;Parent=MS.gene86241.t1 |
| chr5.1 | exon | 23058029 | 23058193 | 23058029 | ID=MS.gene86241.t1.exon2;Parent=MS.gene86241.t1 |
| chr5.1 | CDS | 23058029 | 23058193 | 23058029 | ID=cds.MS.gene86241.t1;Parent=MS.gene86241.t1 |
| chr5.1 | exon | 23058274 | 23058315 | 23058274 | ID=MS.gene86241.t1.exon3;Parent=MS.gene86241.t1 |
| chr5.1 | CDS | 23058274 | 23058315 | 23058274 | ID=cds.MS.gene86241.t1;Parent=MS.gene86241.t1 |
| chr5.1 | exon | 23059791 | 23059832 | 23059791 | ID=MS.gene86241.t1.exon4;Parent=MS.gene86241.t1 |
| chr5.1 | CDS | 23059791 | 23059832 | 23059791 | ID=cds.MS.gene86241.t1;Parent=MS.gene86241.t1 |
| chr5.1 | exon | 23060058 | 23060212 | 23060058 | ID=MS.gene86241.t1.exon5;Parent=MS.gene86241.t1 |
| chr5.1 | CDS | 23060058 | 23060212 | 23060058 | ID=cds.MS.gene86241.t1;Parent=MS.gene86241.t1 |
| chr5.1 | exon | 23061219 | 23061237 | 23061219 | ID=MS.gene86241.t1.exon6;Parent=MS.gene86241.t1 |
| chr5.1 | CDS | 23061219 | 23061237 | 23061219 | ID=cds.MS.gene86241.t1;Parent=MS.gene86241.t1 |
| Gene Sequence |
| Protein sequence |
