Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44269.t1 | XP_003613086.1 | 94 | 166 | 10 | 0 | 1 | 166 | 62 | 227 | 2.30E-67 | 265 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44269.t1 | Q9FVC1 | 65.9 | 179 | 48 | 2 | 1 | 166 | 62 | 240 | 1.4e-41 | 170.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44269.t1 | G7JXQ9 | 94.0 | 166 | 10 | 0 | 1 | 166 | 62 | 227 | 1.7e-67 | 265.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene44269 | 0.811641 | 6.33E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene44269 | 0.805493 | 1.30E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene44269 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene44269 | 0.807934 | 3.97E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene44269 | 0.833237 | 5.99E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene44269 | 0.82039 | 7.03E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene44269 | 0.821569 | 3.77E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene44269 | 0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene44269 | 0.805702 | 1.18E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene44269 | 0.817861 | 2.65E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene44269 | 0.834636 | 2.67E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene44269 | 0.802708 | 4.93E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene44269 | 0.832545 | 8.89E-56 | -1.69E-46 |
| MS.gene054775 | MS.gene44269 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene44269 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene44269 | 0.809615 | 1.73E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene44269 | 0.809534 | 1.80E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene44269 | 0.806015 | 1.01E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene44269 | 0.815594 | 8.54E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene44269 | 0.802086 | 6.63E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene44269 | 0.80129 | 9.66E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene44269 | 0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene44269 | 0.825762 | 3.93E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene44269 | 0.809092 | 2.24E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene44269 | 0.805719 | 1.17E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene44269 | 0.807444 | 5.04E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene44269 | 0.811611 | 6.42E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene44269 | 0.836723 | 7.92E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene44269 | 0.810655 | 1.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85927 | MS.gene44269 | PPI |
| MS.gene55353 | MS.gene44269 | PPI |
| MS.gene010053 | MS.gene44269 | PPI |
| MS.gene78610 | MS.gene44269 | PPI |
| MS.gene53154 | MS.gene44269 | PPI |
| MS.gene061528 | MS.gene44269 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44269.t1 | MTR_5g032520 | 93.976 | 166 | 10 | 0 | 1 | 166 | 62 | 227 | 5.25e-111 | 315 |
| MS.gene44269.t1 | MTR_5g032150 | 81.437 | 167 | 30 | 1 | 1 | 166 | 1 | 167 | 4.71e-93 | 267 |
| MS.gene44269.t1 | MTR_5g032150 | 81.437 | 167 | 30 | 1 | 1 | 166 | 62 | 228 | 5.42e-93 | 270 |
| MS.gene44269.t1 | MTR_5g066180 | 46.108 | 167 | 82 | 5 | 1 | 164 | 62 | 223 | 2.60e-33 | 117 |
| MS.gene44269.t1 | MTR_4g093970 | 38.554 | 166 | 84 | 3 | 1 | 164 | 88 | 237 | 1.28e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44269.t1 | AT2G22540 | 64.246 | 179 | 51 | 2 | 1 | 166 | 57 | 235 | 9.09e-70 | 211 |
| MS.gene44269.t1 | AT2G22540 | 64.246 | 179 | 51 | 2 | 1 | 166 | 62 | 240 | 1.41e-69 | 211 |
| MS.gene44269.t1 | AT2G22540 | 64.246 | 179 | 51 | 2 | 1 | 166 | 62 | 240 | 1.41e-69 | 211 |
| MS.gene44269.t1 | AT4G24540 | 50.595 | 168 | 66 | 7 | 1 | 163 | 62 | 217 | 3.74e-38 | 130 |
Find 36 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGACACCTCACTCAAAT+TGG | 0.183454 | 5.4:+22757505 | MS.gene44269:CDS |
| CCCTCATCTGCCTTAATTGA+TGG | 0.212199 | 5.4:-22755453 | None:intergenic |
| TTGGAGAAGTCTCTTGAAAC+TGG | 0.275036 | 5.4:+22755517 | MS.gene44269:CDS |
| CTCAGAAAAGCCATCAATTA+AGG | 0.306084 | 5.4:+22755443 | MS.gene44269:CDS |
| TCTGGAAGAATTACAACAAT+TGG | 0.380411 | 5.4:+22755498 | MS.gene44269:CDS |
| TCAGACACCTCACTCAAATT+GGG | 0.388618 | 5.4:+22757506 | MS.gene44269:CDS |
| AGAACCGTCGCTAGAGTTGC+AGG | 0.391211 | 5.4:+22754616 | MS.gene44269:CDS |
| ACCTGCAGGCTTCCATATGC+TGG | 0.416131 | 5.4:+22758538 | MS.gene44269:intron |
| ACCTACTATCAGCCAGCATA+TGG | 0.423697 | 5.4:-22758550 | None:intergenic |
| TAGGTGACGGACATGTTTAA+TGG | 0.427034 | 5.4:+22757371 | MS.gene44269:intron |
| TCAGGGAGAGAAGATTATGA+TGG | 0.464183 | 5.4:+22755641 | MS.gene44269:intron |
| ATTCTTCCAGACTCAAACCT+TGG | 0.464341 | 5.4:-22755486 | None:intergenic |
| AGATCTCCAAGGTTTGAGTC+TGG | 0.468779 | 5.4:+22755480 | MS.gene44269:CDS |
| AAGTCTCTTGAAACTGGGTT+GGG | 0.490075 | 5.4:+22755523 | MS.gene44269:CDS |
| CACTGAAGAAGGTCAATCTT+CGG | 0.493342 | 5.4:+22757430 | MS.gene44269:CDS |
| ATGTTTAATGGTAAAAGTCT+TGG | 0.495486 | 5.4:+22757383 | MS.gene44269:CDS |
| GAAGTCTCTTGAAACTGGGT+TGG | 0.501534 | 5.4:+22755522 | MS.gene44269:CDS |
| TTTAATGGTAAAAGTCTTGG+AGG | 0.517414 | 5.4:+22757386 | MS.gene44269:CDS |
| GAGAACGTGGTCACTGAAGA+AGG | 0.533782 | 5.4:+22757419 | MS.gene44269:CDS |
| GCCATCAATTAAGGCAGATG+AGG | 0.554868 | 5.4:+22755452 | MS.gene44269:CDS |
| CCATCAATTAAGGCAGATGA+GGG | 0.559358 | 5.4:+22755453 | MS.gene44269:CDS |
| GATCAATGAGCTACAAACAA+AGG | 0.563866 | 5.4:+22755665 | MS.gene44269:CDS |
| AGACCTTGGTTTCAATTACA+CGG | 0.567331 | 5.4:-22755546 | None:intergenic |
| TGGAGAAGTCTCTTGAAACT+GGG | 0.575456 | 5.4:+22755518 | MS.gene44269:CDS |
| CAACTCTACTAGTCCTCCAC+AGG | 0.580687 | 5.4:+22757472 | MS.gene44269:CDS |
| CTTGCAGGGAAGGCAACTGA+TGG | 0.581631 | 5.4:+22757100 | MS.gene44269:intron |
| GAGCTCTCATAGTCCTGTGG+AGG | 0.606403 | 5.4:-22757485 | None:intergenic |
| CAACTGTTCTAGACTGAGCA+AGG | 0.612785 | 5.4:+22755414 | MS.gene44269:CDS |
| TCTGAGCTCTCATAGTCCTG+TGG | 0.617975 | 5.4:-22757488 | None:intergenic |
| GGGCCGTGTAATTGAAACCA+AGG | 0.647098 | 5.4:+22755543 | MS.gene44269:CDS |
| CAGACACCTCACTCAAATTG+GGG | 0.648977 | 5.4:+22757507 | MS.gene44269:CDS |
| CCAACCTGCAACTCTAGCGA+CGG | 0.655662 | 5.4:-22754620 | None:intergenic |
| AACTAACCCCAATTTGAGTG+AGG | 0.674292 | 5.4:-22757513 | None:intergenic |
| ATGAGGGGAGAAGATCTCCA+AGG | 0.693273 | 5.4:+22755469 | MS.gene44269:CDS |
| CATCAATTAAGGCAGATGAG+GGG | 0.712596 | 5.4:+22755454 | MS.gene44269:CDS |
| AGGAGTTGAATATGAGAACG+TGG | 0.723449 | 5.4:+22757406 | MS.gene44269:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACAATATTTATATTTATA+AGG | + | chr5.4:22756169-22756188 | MS.gene44269:intron | 10.0% |
| !! | ATTAAAAAAGTAATGATTTA+GGG | - | chr5.4:22758405-22758424 | None:intergenic | 10.0% |
| !! | GATAATTTATTATTATAATG+TGG | + | chr5.4:22757805-22757824 | MS.gene44269:intron | 10.0% |
| !! | TACTTTATATATACTTAATT+AGG | - | chr5.4:22756120-22756139 | None:intergenic | 10.0% |
| !! | TTAAATAATTACAAAATCTT+TGG | + | chr5.4:22755272-22755291 | MS.gene44269:intron | 10.0% |
| !!! | AAATTATCTTCTTTTATTTT+TGG | - | chr5.4:22757793-22757812 | None:intergenic | 10.0% |
| !!! | AATTATCTTCTTTTATTTTT+GGG | - | chr5.4:22757792-22757811 | None:intergenic | 10.0% |
| !!! | ATTTTTCTATTTCTAAATAA+CGG | - | chr5.4:22755802-22755821 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAGTAATGATTTT+GGG | - | chr5.4:22758437-22758456 | None:intergenic | 10.0% |
| !!! | TTTTTAAAAAGTAATGATTT+TGG | - | chr5.4:22758438-22758457 | None:intergenic | 10.0% |
| !! | AGAAATAGAAAAATGTTATT+TGG | + | chr5.4:22755808-22755827 | MS.gene44269:intron | 15.0% |
| !! | ATTATTTAAACAACTAATGT+CGG | - | chr5.4:22755261-22755280 | None:intergenic | 15.0% |
| !! | GATTAAAAAAGTAATGATTT+AGG | - | chr5.4:22758406-22758425 | None:intergenic | 15.0% |
| !! | TATGTAAAAATGTAAAATTG+AGG | + | chr5.4:22757832-22757851 | MS.gene44269:intron | 15.0% |
| !!! | TATAAATATTGTGTGTTTTT+CGG | - | chr5.4:22756163-22756182 | None:intergenic | 15.0% |
| !!! | TATATACTTAATTAGGATTT+TGG | - | chr5.4:22756113-22756132 | None:intergenic | 15.0% |
| !!! | TATTTTTATTTTTGCACATA+TGG | + | chr5.4:22756450-22756469 | MS.gene44269:intron | 15.0% |
| !!! | TGTGTACAATAATTTTTATA+TGG | + | chr5.4:22755310-22755329 | MS.gene44269:intron | 15.0% |
| !! | AAAATTAGTGAAATTTAGAG+AGG | + | chr5.4:22758000-22758019 | MS.gene44269:intron | 20.0% |
| !! | AAAGAAAATCTTGAATAGAT+TGG | + | chr5.4:22754756-22754775 | MS.gene44269:intron | 20.0% |
| !! | AAAGTAGAGAAAAAATAATG+TGG | + | chr5.4:22755866-22755885 | MS.gene44269:intron | 20.0% |
| !! | AAATGTCACATTATATGTTT+GGG | - | chr5.4:22757703-22757722 | None:intergenic | 20.0% |
| !! | AAATTAGTGAAATTTAGAGA+GGG | + | chr5.4:22758001-22758020 | MS.gene44269:intron | 20.0% |
| !! | AACTAAATATAATTAGTGGT+GGG | - | chr5.4:22756952-22756971 | None:intergenic | 20.0% |
| !! | ACACAACTAAATATAATTAG+TGG | - | chr5.4:22756956-22756975 | None:intergenic | 20.0% |
| !! | ACTAAACTATTATTTGATAG+AGG | - | chr5.4:22754993-22755012 | None:intergenic | 20.0% |
| !! | CCGTCATTTAAAAAAAAAAT+GGG | - | chr5.4:22757881-22757900 | None:intergenic | 20.0% |
| !! | CTAATTATATTTAGTTGTGT+TGG | + | chr5.4:22756956-22756975 | MS.gene44269:intron | 20.0% |
| !! | GAAAGATTCCATATTATATA+TGG | + | chr5.4:22755062-22755081 | MS.gene44269:intron | 20.0% |
| !! | TAAAAAATCTGGATATAGAA+AGG | - | chr5.4:22756494-22756513 | None:intergenic | 20.0% |
| !! | TAAAAAGATACATCAATCTT+TGG | - | chr5.4:22755727-22755746 | None:intergenic | 20.0% |
| !! | TAATTACAAAATCTTTGGAT+AGG | + | chr5.4:22755277-22755296 | MS.gene44269:intron | 20.0% |
| !! | TATTAGGAAAAGCAAAATTA+AGG | - | chr5.4:22758117-22758136 | None:intergenic | 20.0% |
| !! | TGAAACTATATATAAGGAAA+AGG | + | chr5.4:22756002-22756021 | MS.gene44269:intron | 20.0% |
| !! | TGCACATACTAAAATTAAAT+GGG | - | chr5.4:22757908-22757927 | None:intergenic | 20.0% |
| !! | TGTGATTGAAACTATATATA+AGG | + | chr5.4:22755996-22756015 | MS.gene44269:intron | 20.0% |
| !! | TTAAATTTAAGCATCAAACA+TGG | - | chr5.4:22755373-22755392 | None:intergenic | 20.0% |
| !! | TTGCACATACTAAAATTAAA+TGG | - | chr5.4:22757909-22757928 | None:intergenic | 20.0% |
| !! | TTTAATAGTGAAAAGAAGAA+AGG | + | chr5.4:22757757-22757776 | MS.gene44269:intron | 20.0% |
| !! | TTTGTTAAATAGACACTATT+AGG | - | chr5.4:22758133-22758152 | None:intergenic | 20.0% |
| !!! | AAATAATAAGACCTTTTCAT+AGG | + | chr5.4:22755117-22755136 | MS.gene44269:intron | 20.0% |
| !!! | AATAATAAGACCTTTTCATA+GGG | + | chr5.4:22755118-22755137 | MS.gene44269:intron | 20.0% |
| !!! | ATGTTTAGTCATTTTTTAGT+GGG | - | chr5.4:22758296-22758315 | None:intergenic | 20.0% |
| !!! | ATTTGGTGACAAAATTATAA+AGG | - | chr5.4:22758040-22758059 | None:intergenic | 20.0% |
| !!! | ATTTTCACAGCTTTTAAAAT+AGG | + | chr5.4:22756552-22756571 | MS.gene44269:intron | 20.0% |
| !!! | CCATTTTTTTTTTAAATGAC+GGG | + | chr5.4:22757879-22757898 | MS.gene44269:intron | 20.0% |
| !!! | CCCATTTTTTTTTTAAATGA+CGG | + | chr5.4:22757878-22757897 | MS.gene44269:intron | 20.0% |
| !!! | TCTGTTAGTATTTTTACTAA+AGG | - | chr5.4:22755222-22755241 | None:intergenic | 20.0% |
| !!! | TCTTTTCACTATTAAAGTTT+TGG | - | chr5.4:22757753-22757772 | None:intergenic | 20.0% |
| !!! | TTAGGAAGTTTTTTTTTTTG+AGG | - | chr5.4:22758267-22758286 | None:intergenic | 20.0% |
| !!! | TTTGGTGACAAAATTATAAA+GGG | - | chr5.4:22758039-22758058 | None:intergenic | 20.0% |
| !!! | TTTTGTCACATATCATTATT+AGG | - | chr5.4:22757236-22757255 | None:intergenic | 20.0% |
| ! | ATACTTCATGAGAAAATGTT+GGG | + | chr5.4:22755038-22755057 | MS.gene44269:intron | 25.0% |
| ! | ATGTTTAATGGTAAAAGTCT+TGG | + | chr5.4:22757383-22757402 | MS.gene44269:CDS | 25.0% |
| ! | CAAACATATAATGTGACATT+TGG | + | chr5.4:22757702-22757721 | MS.gene44269:intron | 25.0% |
| ! | CAAATGTCACATTATATGTT+TGG | - | chr5.4:22757704-22757723 | None:intergenic | 25.0% |
| ! | CAACTAAATATAATTAGTGG+TGG | - | chr5.4:22756953-22756972 | None:intergenic | 25.0% |
| ! | CAAGCAAACCATATATAATA+TGG | - | chr5.4:22755073-22755092 | None:intergenic | 25.0% |
| ! | CCAAGTATATAGTAGATATA+TGG | - | chr5.4:22755840-22755859 | None:intergenic | 25.0% |
| ! | CCATATATCTACTATATACT+TGG | + | chr5.4:22755837-22755856 | MS.gene44269:intron | 25.0% |
| ! | CCCGTCATTTAAAAAAAAAA+TGG | - | chr5.4:22757882-22757901 | None:intergenic | 25.0% |
| ! | GCGACAAATTAAATTTCATA+GGG | + | chr5.4:22756304-22756323 | MS.gene44269:intron | 25.0% |
| ! | TAAAATCACTTGTATGTGTT+AGG | + | chr5.4:22757352-22757371 | MS.gene44269:intron | 25.0% |
| ! | TAACAAAGGACATTGTATAT+AGG | + | chr5.4:22756636-22756655 | MS.gene44269:intron | 25.0% |
| ! | TGAAACATTTCTCATAGTTT+CGG | + | chr5.4:22755333-22755352 | MS.gene44269:intron | 25.0% |
| !! | ATAATAAGACCTTTTCATAG+GGG | + | chr5.4:22755119-22755138 | MS.gene44269:intron | 25.0% |
| !! | ATGTGATGTTATGTATGTTT+TGG | - | chr5.4:22756860-22756879 | None:intergenic | 25.0% |
| !! | TGTCCTTTGTTATGTTATTT+CGG | - | chr5.4:22756628-22756647 | None:intergenic | 25.0% |
| !!! | AACATATGATTTGTGGTTTT+AGG | - | chr5.4:22754905-22754924 | None:intergenic | 25.0% |
| !!! | CATGTTTAGTCATTTTTTAG+TGG | - | chr5.4:22758297-22758316 | None:intergenic | 25.0% |
| !!! | TCTATATCCAGATTTTTTAG+AGG | + | chr5.4:22756495-22756514 | MS.gene44269:intron | 25.0% |
| !!! | TTTCTATTTCTAAATAACGG+TGG | - | chr5.4:22755799-22755818 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTGGGTGAAAATT+AGG | - | chr5.4:22758285-22758304 | None:intergenic | 25.0% |
| AAATTACCACACAAAACTCT+TGG | - | chr5.4:22756281-22756300 | None:intergenic | 30.0% | |
| AAGCTAACTGAGTTTCTATT+CGG | - | chr5.4:22754853-22754872 | None:intergenic | 30.0% | |
| AATTACCACACAAAACTCTT+GGG | - | chr5.4:22756280-22756299 | None:intergenic | 30.0% | |
| AATTCCTTGATCGCAAAATT+TGG | - | chr5.4:22758057-22758076 | None:intergenic | 30.0% | |
| AGAAAAAAAAAGTCTGCATG+AGG | - | chr5.4:22757187-22757206 | None:intergenic | 30.0% | |
| AGACCGAAATAACATAACAA+AGG | + | chr5.4:22756622-22756641 | MS.gene44269:intron | 30.0% | |
| AGGAAAAGCAAAATTAAGGA+GGG | - | chr5.4:22758113-22758132 | None:intergenic | 30.0% | |
| ATCTTATATCCCCTATGAAA+AGG | - | chr5.4:22755131-22755150 | None:intergenic | 30.0% | |
| CAATGACACATTGAATGAAA+TGG | - | chr5.4:22757563-22757582 | None:intergenic | 30.0% | |
| CTCGAAAAACATATGATTTG+TGG | - | chr5.4:22754912-22754931 | None:intergenic | 30.0% | |
| GATACTTCATGAGAAAATGT+TGG | + | chr5.4:22755037-22755056 | MS.gene44269:intron | 30.0% | |
| GGCGACAAATTAAATTTCAT+AGG | + | chr5.4:22756303-22756322 | MS.gene44269:intron | 30.0% | |
| GGGAATCACATAAAGTATAA+AGG | - | chr5.4:22756260-22756279 | None:intergenic | 30.0% | |
| GTAATACACATACACAATCT+TGG | + | chr5.4:22756024-22756043 | MS.gene44269:intron | 30.0% | |
| TAATGATGTGATGAAAAGTG+AGG | + | chr5.4:22755894-22755913 | MS.gene44269:intron | 30.0% | |
| TAGGAAAAGCAAAATTAAGG+AGG | - | chr5.4:22758114-22758133 | None:intergenic | 30.0% | |
| TCTGGAAGAATTACAACAAT+TGG | + | chr5.4:22755498-22755517 | MS.gene44269:CDS | 30.0% | |
| TGAACTCTAGACTTTACATA+TGG | + | chr5.4:22757666-22757685 | MS.gene44269:intron | 30.0% | |
| TGTTTATTTGGATTCAGTTG+TGG | - | chr5.4:22756895-22756914 | None:intergenic | 30.0% | |
| TTACAAAATCTTTGGATAGG+AGG | + | chr5.4:22755280-22755299 | MS.gene44269:intron | 30.0% | |
| TTTAATGGTAAAAGTCTTGG+AGG | + | chr5.4:22757386-22757405 | MS.gene44269:CDS | 30.0% | |
| ! | GTGTTGGAATATGTGTTATT+CGG | - | chr5.4:22756919-22756938 | None:intergenic | 30.0% |
| ! | TGTTGGAATATGTGTTATTC+GGG | - | chr5.4:22756918-22756937 | None:intergenic | 30.0% |
| !! | AGAGTTTTGTGTGGTAATTT+TGG | + | chr5.4:22756281-22756300 | MS.gene44269:intron | 30.0% |
| !! | GAGTTTTGTGTGGTAATTTT+GGG | + | chr5.4:22756282-22756301 | MS.gene44269:intron | 30.0% |
| !! | TTTTTAGTCATGTAGCTTAG+TGG | + | chr5.4:22757598-22757617 | MS.gene44269:intron | 30.0% |
| !!! | AAAACATCTTTCGAGTTTTC+AGG | + | chr5.4:22755623-22755642 | MS.gene44269:intron | 30.0% |
| !!! | AAACATCTTTCGAGTTTTCA+GGG | + | chr5.4:22755624-22755643 | MS.gene44269:intron | 30.0% |
| !!! | ATCATACATGTCGTTTTAGT+CGG | - | chr5.4:22757136-22757155 | None:intergenic | 30.0% |
| !!! | ATGTTTGGAAGTTGTTTTTG+AGG | - | chr5.4:22756786-22756805 | None:intergenic | 30.0% |
| !!! | GTATGTTTTGGTTAGTATGA+TGG | - | chr5.4:22756848-22756867 | None:intergenic | 30.0% |
| !!! | TTTTTCGAGTATCCTATGTA+TGG | + | chr5.4:22754923-22754942 | MS.gene44269:intron | 30.0% |
| AACAAGTGGAGTGATAAAGT+TGG | + | chr5.4:22755178-22755197 | MS.gene44269:intron | 35.0% | |
| ACTAACAGTTGTCCATACAT+AGG | - | chr5.4:22754938-22754957 | None:intergenic | 35.0% | |
| AGACCTTGGTTTCAATTACA+CGG | - | chr5.4:22755549-22755568 | None:intergenic | 35.0% | |
| ATGTATGGACAACTGTTAGT+GGG | + | chr5.4:22754938-22754957 | MS.gene44269:intron | 35.0% | |
| CAAATTCGTTGCAACAATCT+AGG | - | chr5.4:22756402-22756421 | None:intergenic | 35.0% | |
| CACATATTCCAACACTCATT+CGG | + | chr5.4:22756924-22756943 | MS.gene44269:intron | 35.0% | |
| CCCTACTAATTCATCTCAAA+GGG | - | chr5.4:22757635-22757654 | None:intergenic | 35.0% | |
| CTCAGAAAAGCCATCAATTA+AGG | + | chr5.4:22755443-22755462 | MS.gene44269:CDS | 35.0% | |
| GAAAAATACACATGCAACCT+GGG | - | chr5.4:22758245-22758264 | None:intergenic | 35.0% | |
| GATCAATGAGCTACAAACAA+AGG | + | chr5.4:22755665-22755684 | MS.gene44269:CDS | 35.0% | |
| GATTCAGTTGTGGAAATTCA+AGG | - | chr5.4:22756885-22756904 | None:intergenic | 35.0% | |
| GTAGATAGAATTGAAGACCT+TGG | - | chr5.4:22755563-22755582 | None:intergenic | 35.0% | |
| TAGGGGATATAAGATTGACT+TGG | + | chr5.4:22755136-22755155 | MS.gene44269:intron | 35.0% | |
| TATGTATGGACAACTGTTAG+TGG | + | chr5.4:22754937-22754956 | MS.gene44269:intron | 35.0% | |
| TCCCTACTAATTCATCTCAA+AGG | - | chr5.4:22757636-22757655 | None:intergenic | 35.0% | |
| TGAATCACTTATGTGTCTTG+TGG | + | chr5.4:22754664-22754683 | MS.gene44269:intron | 35.0% | |
| TTAAGGAGGGAAATTAGTGA+CGG | - | chr5.4:22758100-22758119 | None:intergenic | 35.0% | |
| ! | CGAGTCAAGTTATCTTTTGT+AGG | - | chr5.4:22754830-22754849 | None:intergenic | 35.0% |
| ! | GTGTTATTCGGGTGTTTATT+TGG | - | chr5.4:22756907-22756926 | None:intergenic | 35.0% |
| ! | TAGTATGATGGTCTTTTGCA+GGG | - | chr5.4:22756836-22756855 | None:intergenic | 35.0% |
| ! | TATTTGCTAACTTTGTACCC+AGG | + | chr5.4:22758225-22758244 | MS.gene44269:intron | 35.0% |
| ! | TCAGTGTCCTCTAAAAAATC+TGG | - | chr5.4:22756505-22756524 | None:intergenic | 35.0% |
| ! | TGTTGCAACGAATTTGTTCA+TGG | + | chr5.4:22756406-22756425 | MS.gene44269:intron | 35.0% |
| ! | TTAGTATGATGGTCTTTTGC+AGG | - | chr5.4:22756837-22756856 | None:intergenic | 35.0% |
| ! | TTTGTTCATGGAGAGGATTT+TGG | + | chr5.4:22756418-22756437 | MS.gene44269:intron | 35.0% |
| !! | ACCCTTTGAGATGAATTAGT+AGG | + | chr5.4:22757631-22757650 | MS.gene44269:intron | 35.0% |
| !! | AGTAACCGAGTCTTATTTGA+AGG | + | chr5.4:22756136-22756155 | MS.gene44269:intron | 35.0% |
| !! | ATAAGATTGACTTGGTGGTT+GGG | + | chr5.4:22755144-22755163 | MS.gene44269:intron | 35.0% |
| !! | ATTGGTGTTTTTGATGTACG+AGG | - | chr5.4:22756688-22756707 | None:intergenic | 35.0% |
| !! | CCCTTTGAGATGAATTAGTA+GGG | + | chr5.4:22757632-22757651 | MS.gene44269:intron | 35.0% |
| !! | TATAAGATTGACTTGGTGGT+TGG | + | chr5.4:22755143-22755162 | MS.gene44269:intron | 35.0% |
| !! | TATATGGTTTGCTTGCGTTA+AGG | + | chr5.4:22755078-22755097 | MS.gene44269:intron | 35.0% |
| !! | TCAAGTGTGGAACTTGTTTT+CGG | - | chr5.4:22756733-22756752 | None:intergenic | 35.0% |
| !!! | AGTTGTTTTTGAGGTCATTC+AGG | - | chr5.4:22756777-22756796 | None:intergenic | 35.0% |
| AACTAACCCCAATTTGAGTG+AGG | - | chr5.4:22757516-22757535 | None:intergenic | 40.0% | |
| AAGTCTCTTGAAACTGGGTT+GGG | + | chr5.4:22755523-22755542 | MS.gene44269:CDS | 40.0% | |
| AGGAGTTGAATATGAGAACG+TGG | + | chr5.4:22757406-22757425 | MS.gene44269:CDS | 40.0% | |
| ATTCTTCCAGACTCAAACCT+TGG | - | chr5.4:22755489-22755508 | None:intergenic | 40.0% | |
| CACTGAAGAAGGTCAATCTT+CGG | + | chr5.4:22757430-22757449 | MS.gene44269:CDS | 40.0% | |
| CACTTGTATGTGTTAGGTGA+CGG | + | chr5.4:22757358-22757377 | MS.gene44269:intron | 40.0% | |
| CATCAATTAAGGCAGATGAG+GGG | + | chr5.4:22755454-22755473 | MS.gene44269:CDS | 40.0% | |
| CCATCAATTAAGGCAGATGA+GGG | + | chr5.4:22755453-22755472 | MS.gene44269:CDS | 40.0% | |
| CTAGACTTTACATATGGCAG+TGG | + | chr5.4:22757672-22757691 | MS.gene44269:intron | 40.0% | |
| GAAAACAAGTTCCACACTTG+AGG | + | chr5.4:22756732-22756751 | MS.gene44269:intron | 40.0% | |
| GAATAGATTGGTACCACTGA+AGG | + | chr5.4:22754768-22754787 | MS.gene44269:intron | 40.0% | |
| GGAAAAATACACATGCAACC+TGG | - | chr5.4:22758246-22758265 | None:intergenic | 40.0% | |
| GGCTTGAATGAGGTCTTTAT+TGG | - | chr5.4:22756706-22756725 | None:intergenic | 40.0% | |
| GTCATTCAGGATGAAGTTTG+AGG | - | chr5.4:22756764-22756783 | None:intergenic | 40.0% | |
| TCAGACACCTCACTCAAATT+GGG | + | chr5.4:22757506-22757525 | MS.gene44269:CDS | 40.0% | |
| TCAGGGAGAGAAGATTATGA+TGG | + | chr5.4:22755641-22755660 | MS.gene44269:intron | 40.0% | |
| TCGGTCCTTCAAATAAGACT+CGG | - | chr5.4:22756144-22756163 | None:intergenic | 40.0% | |
| TGCGATCAAGGAATTTGTGA+AGG | + | chr5.4:22758062-22758081 | MS.gene44269:intron | 40.0% | |
| TGGAGAAGTCTCTTGAAACT+GGG | + | chr5.4:22755518-22755537 | MS.gene44269:CDS | 40.0% | |
| TTAGCTTCTCAAATGTGCGA+GGG | + | chr5.4:22754866-22754885 | MS.gene44269:intron | 40.0% | |
| TTGGAGAAGTCTCTTGAAAC+TGG | + | chr5.4:22755517-22755536 | MS.gene44269:CDS | 40.0% | |
| ! | CAACGAATTTGTTCATGGAG+AGG | + | chr5.4:22756411-22756430 | MS.gene44269:intron | 40.0% |
| ! | GTCACCAAATTTTGCGATCA+AGG | + | chr5.4:22758050-22758069 | MS.gene44269:intron | 40.0% |
| ! | TGGTCTTTTGCAGGGATTTT+TGG | - | chr5.4:22756828-22756847 | None:intergenic | 40.0% |
| !! | GGGATATAAGATTGACTTGG+TGG | + | chr5.4:22755139-22755158 | MS.gene44269:intron | 40.0% |
| !! | TAAGATTGACTTGGTGGTTG+GGG | + | chr5.4:22755145-22755164 | MS.gene44269:intron | 40.0% |
| !! | TAGGTGACGGACATGTTTAA+TGG | + | chr5.4:22757371-22757390 | MS.gene44269:intron | 40.0% |
| !! | TGATTCCCAAGAGTTTTGTG+TGG | + | chr5.4:22756272-22756291 | MS.gene44269:intron | 40.0% |
| ACAACTCTCACTGAACTTGC+AGG | + | chr5.4:22757085-22757104 | MS.gene44269:intron | 45.0% | |
| AGATCTCCAAGGTTTGAGTC+TGG | + | chr5.4:22755480-22755499 | MS.gene44269:CDS | 45.0% | |
| CAACTCTCACTGAACTTGCA+GGG | + | chr5.4:22757086-22757105 | MS.gene44269:intron | 45.0% | |
| CAGACACCTCACTCAAATTG+GGG | + | chr5.4:22757507-22757526 | MS.gene44269:CDS | 45.0% | |
| CATGTACTATTTGCACCTGC+AGG | + | chr5.4:22758524-22758543 | MS.gene44269:intron | 45.0% | |
| CCCTCATCTGCCTTAATTGA+TGG | - | chr5.4:22755456-22755475 | None:intergenic | 45.0% | |
| CTCAGACACCTCACTCAAAT+TGG | + | chr5.4:22757505-22757524 | MS.gene44269:CDS | 45.0% | |
| GAAGTCTCTTGAAACTGGGT+TGG | + | chr5.4:22755522-22755541 | MS.gene44269:CDS | 45.0% | |
| GCCATCAATTAAGGCAGATG+AGG | + | chr5.4:22755452-22755471 | MS.gene44269:CDS | 45.0% | |
| GCGGACGATAGATAGATGTT+TGG | - | chr5.4:22756801-22756820 | None:intergenic | 45.0% | |
| ! | CAACTGTTCTAGACTGAGCA+AGG | + | chr5.4:22755414-22755433 | MS.gene44269:CDS | 45.0% |
| ! | GTTAGCTTCTCAAATGTGCG+AGG | + | chr5.4:22754865-22754884 | MS.gene44269:intron | 45.0% |
| !! | GTGGAACTTGTTTTCGGTGT+TGG | - | chr5.4:22756727-22756746 | None:intergenic | 45.0% |
| !! | TTTCGGTGTTGGCTTGAATG+AGG | - | chr5.4:22756716-22756735 | None:intergenic | 45.0% |
| !!! | TGCAGGGATTTTTGGTGTAG+CGG | - | chr5.4:22756820-22756839 | None:intergenic | 45.0% |
| !! | AAAAAGAATAAAAAATTAAT+AGG | - | chr5.4:22756084-22756103 | None:intergenic | 5.0% |
| ATGAGGGGAGAAGATCTCCA+AGG | + | chr5.4:22755469-22755488 | MS.gene44269:CDS | 50.0% | |
| CAACTCTACTAGTCCTCCAC+AGG | + | chr5.4:22757472-22757491 | MS.gene44269:CDS | 50.0% | |
| GAGAACGTGGTCACTGAAGA+AGG | + | chr5.4:22757419-22757438 | MS.gene44269:CDS | 50.0% | |
| GGGCCGTGTAATTGAAACCA+AGG | + | chr5.4:22755543-22755562 | MS.gene44269:CDS | 50.0% | |
| TCTCACTGAACTTGCAGGGA+AGG | + | chr5.4:22757090-22757109 | MS.gene44269:intron | 50.0% | |
| TCTGAGCTCTCATAGTCCTG+TGG | - | chr5.4:22757491-22757510 | None:intergenic | 50.0% | |
| ! | TGAGGCTTTTGCCTCAAGTG+TGG | - | chr5.4:22756746-22756765 | None:intergenic | 50.0% |
| !! | ACCACTGAAGGTATCTGTGC+TGG | + | chr5.4:22754780-22754799 | MS.gene44269:intron | 50.0% |
| !! | TGAAGGTATCTGTGCTGGCA+TGG | + | chr5.4:22754785-22754804 | MS.gene44269:intron | 50.0% |
| ACCTGCAGGCTTCCATATGC+TGG | + | chr5.4:22758538-22758557 | MS.gene44269:intron | 55.0% | |
| AGAACCGTCGCTAGAGTTGC+AGG | + | chr5.4:22754616-22754635 | MS.gene44269:CDS | 55.0% | |
| CCAACCTGCAACTCTAGCGA+CGG | - | chr5.4:22754623-22754642 | None:intergenic | 55.0% | |
| CTTGCAGGGAAGGCAACTGA+TGG | + | chr5.4:22757100-22757119 | MS.gene44269:intron | 55.0% | |
| GAGCTCTCATAGTCCTGTGG+AGG | - | chr5.4:22757488-22757507 | None:intergenic | 55.0% | |
| GCCAGCACAGATACCTTCAG+TGG | - | chr5.4:22754784-22754803 | None:intergenic | 55.0% | |
| GCTTCTCAAATGTGCGAGGG+TGG | + | chr5.4:22754869-22754888 | MS.gene44269:intron | 55.0% | |
| GGTGGGATCCGAATGAGTGT+TGG | - | chr5.4:22756935-22756954 | None:intergenic | 55.0% | |
| CCGTCGCTAGAGTTGCAGGT+TGG | + | chr5.4:22754620-22754639 | MS.gene44269:intron | 60.0% | |
| GCCAGCATATGGAAGCCTGC+AGG | - | chr5.4:22758542-22758561 | None:intergenic | 60.0% | |
| GGGGCGCGAGAGCTAACAAG+TGG | + | chr5.4:22755164-22755183 | MS.gene44269:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22754560 | 22758564 | 22754560 | ID=MS.gene44269 |
| chr5.4 | mRNA | 22754560 | 22758564 | 22754560 | ID=MS.gene44269.t1;Parent=MS.gene44269 |
| chr5.4 | exon | 22754560 | 22754637 | 22754560 | ID=MS.gene44269.t1.exon1;Parent=MS.gene44269.t1 |
| chr5.4 | CDS | 22754560 | 22754637 | 22754560 | ID=cds.MS.gene44269.t1;Parent=MS.gene44269.t1 |
| chr5.4 | exon | 22755400 | 22755564 | 22755400 | ID=MS.gene44269.t1.exon2;Parent=MS.gene44269.t1 |
| chr5.4 | CDS | 22755400 | 22755564 | 22755400 | ID=cds.MS.gene44269.t1;Parent=MS.gene44269.t1 |
| chr5.4 | exon | 22755645 | 22755686 | 22755645 | ID=MS.gene44269.t1.exon3;Parent=MS.gene44269.t1 |
| chr5.4 | CDS | 22755645 | 22755686 | 22755645 | ID=cds.MS.gene44269.t1;Parent=MS.gene44269.t1 |
| chr5.4 | exon | 22757107 | 22757148 | 22757107 | ID=MS.gene44269.t1.exon4;Parent=MS.gene44269.t1 |
| chr5.4 | CDS | 22757107 | 22757148 | 22757107 | ID=cds.MS.gene44269.t1;Parent=MS.gene44269.t1 |
| chr5.4 | exon | 22757374 | 22757528 | 22757374 | ID=MS.gene44269.t1.exon5;Parent=MS.gene44269.t1 |
| chr5.4 | CDS | 22757374 | 22757528 | 22757374 | ID=cds.MS.gene44269.t1;Parent=MS.gene44269.t1 |
| chr5.4 | exon | 22758546 | 22758564 | 22758546 | ID=MS.gene44269.t1.exon6;Parent=MS.gene44269.t1 |
| chr5.4 | CDS | 22758546 | 22758564 | 22758546 | ID=cds.MS.gene44269.t1;Parent=MS.gene44269.t1 |
| Gene Sequence |
| Protein sequence |
