AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01164

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01164.t1 MTR_2g008710 95.385 325 15 0 1 325 1 325 0.0 619
MS.gene01164.t1 MTR_2g008730 87.692 325 16 1 1 325 1 301 0.0 551
MS.gene01164.t1 MTR_4g114210 60.443 316 122 2 11 325 7 320 7.61e-143 406
MS.gene01164.t1 MTR_2g008160 51.667 300 142 3 28 325 25 323 6.36e-100 297
MS.gene01164.t1 MTR_2g088770 47.500 320 160 6 10 325 10 325 1.33e-93 281
MS.gene01164.t1 MTR_4g125940 46.749 323 160 6 10 325 12 329 2.05e-90 273
MS.gene01164.t1 MTR_4g046713 45.872 327 165 6 4 325 7 326 4.51e-90 272
MS.gene01164.t1 MTR_5g022870 44.025 318 164 4 11 325 10 316 1.33e-89 271
MS.gene01164.t1 MTR_1g025980 44.479 317 164 4 8 321 7 314 3.74e-89 270
MS.gene01164.t1 MTR_1g086320 43.620 337 171 7 1 325 4 333 3.06e-88 268
MS.gene01164.t1 MTR_7g086820 45.515 301 152 5 28 325 21 312 3.11e-88 267
MS.gene01164.t1 MTR_2g040000 47.195 303 148 5 31 325 33 331 1.49e-87 266
MS.gene01164.t1 MTR_2g029815 44.000 325 170 6 8 325 11 330 2.78e-87 266
MS.gene01164.t1 MTR_1g038680 47.557 307 148 7 28 325 30 332 2.86e-87 265
MS.gene01164.t1 MTR_2g029750 48.185 303 144 5 31 325 33 330 8.92e-87 265
MS.gene01164.t1 MTR_1g086490 43.931 346 164 8 1 325 4 340 1.17e-86 264
MS.gene01164.t1 MTR_2g028980 45.000 320 164 6 13 325 16 330 1.50e-86 264
MS.gene01164.t1 MTR_8g075100 44.918 305 157 3 24 325 23 319 1.90e-86 263
MS.gene01164.t1 MTR_3g092990 44.970 338 161 8 1 325 1 326 2.17e-86 263
MS.gene01164.t1 MTR_2g029830 46.689 302 150 5 31 325 32 329 5.68e-86 263
MS.gene01164.t1 MTR_2g029800 44.371 302 157 5 31 325 33 330 1.50e-85 261
MS.gene01164.t1 MTR_7g107520 45.603 307 156 4 23 325 21 320 2.21e-85 260
MS.gene01164.t1 MTR_4g125940 50.362 276 126 5 57 325 3 274 3.26e-85 258
MS.gene01164.t1 MTR_5g021060 47.508 301 148 5 31 325 34 330 1.11e-84 258
MS.gene01164.t1 MTR_5g017850 43.636 330 177 4 1 325 1 326 2.21e-84 258
MS.gene01164.t1 MTR_2g029740 46.026 302 152 5 31 325 33 330 4.88e-84 258
MS.gene01164.t1 MTR_1g101830 42.901 324 170 5 6 325 10 322 7.82e-84 256
MS.gene01164.t1 MTR_2g029820 45.364 302 154 5 31 325 33 330 8.30e-84 257
MS.gene01164.t1 MTR_5g017860 46.000 300 153 4 31 325 31 326 1.57e-83 255
MS.gene01164.t1 MTR_7g093370 44.207 328 169 7 6 325 50 371 1.71e-83 257
MS.gene01164.t1 MTR_2g008160 46.000 300 124 3 28 325 25 288 3.74e-82 251
MS.gene01164.t1 MTR_1g054205 45.545 303 153 6 31 325 28 326 8.66e-82 251
MS.gene01164.t1 MTR_0155s0040 40.923 325 172 5 8 325 4 315 2.25e-81 249
MS.gene01164.t1 MTR_7g086870 45.515 301 149 5 28 325 23 311 3.76e-81 249
MS.gene01164.t1 MTR_2g029730 44.371 302 157 5 31 325 29 326 1.43e-80 248
MS.gene01164.t1 MTR_2g084080 42.073 328 173 6 3 325 2 317 2.21e-80 247
MS.gene01164.t1 MTR_2g029860 45.033 302 155 5 31 325 33 330 3.26e-80 248
MS.gene01164.t1 MTR_7g072480 42.424 330 171 8 1 325 1 316 1.39e-79 245
MS.gene01164.t1 MTR_8g076820 44.667 300 158 4 31 325 34 330 1.49e-79 245
MS.gene01164.t1 MTR_2g029560 44.040 302 158 5 31 325 28 325 1.67e-79 246
MS.gene01164.t1 MTR_7g072510 43.210 324 162 7 8 325 5 312 1.82e-79 244
MS.gene01164.t1 MTR_4g133800 41.611 298 166 3 29 325 43 333 3.34e-79 244
MS.gene01164.t1 MTR_2g084000 41.033 329 177 6 3 325 2 319 2.25e-78 242
MS.gene01164.t1 MTR_6g027440 42.236 322 174 6 7 325 2 314 9.38e-78 240
MS.gene01164.t1 MTR_2g029850 43.046 302 161 5 31 325 33 330 2.42e-77 241
MS.gene01164.t1 MTR_4g122640 45.545 303 149 9 31 325 42 336 3.53e-77 239
MS.gene01164.t1 MTR_3g094650 41.033 329 171 7 4 325 10 322 6.41e-77 238
MS.gene01164.t1 MTR_2g084110 41.667 324 172 6 7 325 6 317 7.70e-77 238
MS.gene01164.t1 MTR_2g084010 44.000 300 153 5 31 325 29 318 8.56e-77 238
MS.gene01164.t1 MTR_1g115900 44.040 302 151 6 31 325 31 321 5.02e-76 236
MS.gene01164.t1 MTR_1g077000 41.000 300 161 5 29 325 41 327 5.64e-76 236
MS.gene01164.t1 MTR_4g029170 41.590 327 172 8 6 325 7 321 1.55e-75 235
MS.gene01164.t1 MTR_5g074970 41.742 333 168 8 4 325 9 326 1.84e-75 235
MS.gene01164.t1 MTR_7g029030 40.308 325 179 7 7 325 5 320 2.26e-75 234
MS.gene01164.t1 MTR_4g083710 41.317 334 177 8 1 325 1 324 6.62e-75 233
MS.gene01164.t1 MTR_2g084020 40.854 328 178 6 3 325 2 318 7.24e-75 233
MS.gene01164.t1 MTR_5g083860 42.715 302 155 6 31 325 35 325 8.94e-75 233
MS.gene01164.t1 MTR_4g087965 41.935 341 172 8 4 322 7 343 9.61e-75 234
MS.gene01164.t1 MTR_4g029200 43.333 300 154 5 31 325 50 338 3.19e-74 232
MS.gene01164.t1 MTR_3g072190 41.159 328 177 5 3 325 2 318 4.00e-74 231
MS.gene01164.t1 MTR_2g437770 41.667 300 158 4 31 325 54 341 5.70e-74 231
MS.gene01164.t1 MTR_3g092990 42.604 338 158 9 1 325 1 315 8.66e-74 230
MS.gene01164.t1 MTR_4g029190 41.824 318 164 8 18 325 34 340 1.36e-73 231
MS.gene01164.t1 MTR_2g078610 40.290 345 164 6 15 322 64 403 1.60e-73 233
MS.gene01164.t1 MTR_2g029910 42.574 303 162 6 31 325 34 332 1.85e-73 231
MS.gene01164.t1 MTR_1g009750 40.785 331 184 6 3 325 2 328 2.30e-73 229
MS.gene01164.t1 MTR_1g090760 38.973 331 182 7 6 325 9 330 3.44e-73 229
MS.gene01164.t1 MTR_2g067440 38.841 345 172 6 12 322 45 384 6.81e-73 230
MS.gene01164.t1 MTR_2g084090 40.615 325 175 6 7 325 6 318 8.26e-73 228
MS.gene01164.t1 MTR_2g099175 39.706 340 182 7 3 325 2 335 2.69e-72 227
MS.gene01164.t1 MTR_5g049280 40.653 337 179 12 5 325 6 337 4.40e-72 226
MS.gene01164.t1 MTR_2g077990 40.476 336 158 6 24 322 73 403 1.63e-71 227
MS.gene01164.t1 MTR_4g029180 41.722 302 158 6 31 325 31 321 2.44e-71 224
MS.gene01164.t1 MTR_3g466200 39.640 333 180 7 1 325 1 320 2.45e-71 224
MS.gene01164.t1 MTR_8g062780 42.810 306 156 7 31 325 27 324 3.52e-71 224
MS.gene01164.t1 MTR_1g022970 42.715 302 162 5 31 325 50 347 4.44e-71 224
MS.gene01164.t1 MTR_3g105790 41.846 325 174 5 5 325 9 322 5.74e-71 223
MS.gene01164.t1 MTR_7g026990 41.718 326 168 8 5 325 14 322 8.49e-71 223
MS.gene01164.t1 MTR_4g074995 43.564 303 141 9 31 325 28 308 1.99e-70 221
MS.gene01164.t1 MTR_2g029830 46.743 261 128 5 72 325 5 261 2.06e-70 221
MS.gene01164.t1 MTR_3g094670 40.923 325 169 7 4 321 10 318 5.92e-69 218
MS.gene01164.t1 MTR_2g078280 40.000 325 153 6 24 311 73 392 2.27e-68 219
MS.gene01164.t1 MTR_4g095450 41.196 301 160 6 32 324 32 323 3.50e-68 216
MS.gene01164.t1 MTR_5g014100 41.967 305 164 6 31 325 30 331 5.40e-68 216
MS.gene01164.t1 MTR_6g043240 39.604 303 170 4 25 325 40 331 5.35e-67 214
MS.gene01164.t1 MTR_5g074760 39.394 330 181 9 4 325 3 321 1.36e-66 212
MS.gene01164.t1 MTR_3g466180 43.667 300 153 5 31 325 35 323 2.04e-66 211
MS.gene01164.t1 MTR_3g094630 39.818 329 175 7 4 325 10 322 2.05e-66 211
MS.gene01164.t1 MTR_5g074740 42.244 303 157 8 31 325 29 321 2.27e-66 211
MS.gene01164.t1 MTR_5g016010 36.086 327 196 6 4 322 5 326 3.55e-66 211
MS.gene01164.t1 MTR_4g074990 39.692 325 159 10 9 325 10 305 2.64e-65 208
MS.gene01164.t1 MTR_4g127670 39.216 306 176 5 25 325 23 323 4.31e-65 208
MS.gene01164.t1 MTR_5g074860 40.000 325 171 11 9 321 9 321 6.94e-65 207
MS.gene01164.t1 MTR_4g030890 39.274 303 172 6 28 325 101 396 1.56e-64 209
MS.gene01164.t1 MTR_5g074710 38.182 330 185 9 4 325 3 321 2.55e-64 206
MS.gene01164.t1 MTR_6g043280 37.377 305 176 5 25 325 39 332 5.95e-64 206
MS.gene01164.t1 MTR_6g043460 39.216 306 170 5 25 325 34 328 1.41e-63 205
MS.gene01164.t1 MTR_4g031140 38.614 303 174 6 28 325 29 324 3.23e-63 204
MS.gene01164.t1 MTR_3g467600 41.584 303 160 7 31 325 31 324 2.73e-62 201
MS.gene01164.t1 MTR_1g009750 38.298 329 178 7 3 325 2 311 3.97e-62 200
MS.gene01164.t1 MTR_0147s0010 38.339 313 158 7 31 322 81 379 7.33e-61 199
MS.gene01164.t1 MTR_2g067450 40.323 310 164 9 24 322 8 307 1.50e-60 196
MS.gene01164.t1 MTR_4g074980 39.667 300 142 9 31 325 29 294 4.22e-59 192
MS.gene01164.t1 MTR_0286s0010 37.346 324 189 8 10 325 17 334 6.35e-59 192
MS.gene01164.t1 MTR_6g008075 37.346 324 189 8 10 325 17 334 6.35e-59 192
MS.gene01164.t1 MTR_3g072190 43.678 261 131 5 70 325 2 251 7.15e-59 190
MS.gene01164.t1 MTR_4g132110 35.737 319 189 5 14 325 19 328 1.59e-58 191
MS.gene01164.t1 MTR_1g066710 34.098 305 185 6 28 325 28 323 6.95e-58 189
MS.gene01164.t1 MTR_4g074980 41.897 253 130 7 9 253 10 253 5.84e-57 185
MS.gene01164.t1 MTR_2g008160 51.064 188 81 2 28 214 25 202 6.41e-57 183
MS.gene01164.t1 MTR_4g132110 35.185 324 189 6 14 325 19 333 2.76e-56 186
MS.gene01164.t1 MTR_4g132490 36.013 311 185 6 22 325 24 327 5.51e-56 185
MS.gene01164.t1 MTR_1g066640 33.770 305 186 6 28 325 28 323 6.05e-55 182
MS.gene01164.t1 MTR_5g033470 35.161 310 183 9 28 325 74 377 1.96e-54 182
MS.gene01164.t1 MTR_1g066380 33.770 305 186 6 28 325 28 323 4.00e-53 177
MS.gene01164.t1 MTR_1g066680 33.115 305 187 6 28 325 28 322 3.09e-52 175
MS.gene01164.t1 MTR_3g105790 42.629 251 135 4 79 325 1 246 1.57e-50 168
MS.gene01164.t1 MTR_5g074860 33.846 325 152 12 9 321 9 282 6.60e-44 152
MS.gene01164.t1 MTR_1g066380 33.206 262 159 6 71 325 3 255 2.64e-41 144
MS.gene01164.t1 MTR_5g074700 41.880 234 108 9 96 325 5 214 2.26e-39 138
MS.gene01164.t1 MTR_6g048160 89.552 67 7 0 66 132 22 88 8.78e-37 127
MS.gene01164.t1 MTR_4g114220 60.870 92 28 2 47 136 23 108 9.54e-32 116
MS.gene01164.t1 MTR_2g077980 32.482 274 145 6 86 322 11 281 2.58e-31 119
MS.gene01164.t1 MTR_3g072260 48.837 129 59 3 10 131 6 134 9.46e-31 113
MS.gene01164.t1 MTR_2g078560 33.772 228 113 5 128 322 95 317 1.11e-30 118
MS.gene01164.t1 MTR_2g029880 37.113 194 105 4 135 325 9 188 4.44e-30 114
MS.gene01164.t1 MTR_7g072490 34.263 251 97 8 72 318 1 187 1.45e-29 112
MS.gene01164.t1 MTR_3g072210 38.191 199 101 6 134 325 55 238 2.27e-28 110
MS.gene01164.t1 MTR_7g086790 36.269 193 98 6 74 262 17 188 3.38e-27 105
MS.gene01164.t1 MTR_5g058120 35.928 167 92 3 157 323 6 157 9.68e-25 100
MS.gene01164.t1 MTR_7g086810 38.261 115 49 1 28 142 7 99 3.19e-21 90.9
MS.gene01164.t1 MTR_1g089005 37.879 132 71 2 17 137 3 134 1.94e-20 86.7
MS.gene01164.t1 MTR_3g462850 34.483 145 84 6 187 325 10 149 1.29e-14 70.5
MS.gene01164.t1 MTR_7g086785 39.286 84 48 1 70 150 1 84 1.72e-13 67.0
MS.gene01164.t1 MTR_1g098320 43.902 82 42 1 244 325 47 124 2.23e-12 63.9
MS.gene01164.t1 MTR_4g012865 47.170 53 28 0 28 80 78 130 3.91e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01164.t1 AT2G41480 61.442 319 119 2 8 325 13 328 5.85e-147 417
MS.gene01164.t1 AT5G39580 63.354 322 112 3 5 325 3 319 8.00e-146 414
MS.gene01164.t1 AT5G64120 62.162 333 107 5 5 325 3 328 3.42e-145 412
MS.gene01164.t1 AT5G64100 56.886 334 129 4 3 325 2 331 6.31e-127 366
MS.gene01164.t1 AT5G64110 56.329 316 136 2 10 325 17 330 6.82e-124 358
MS.gene01164.t1 AT4G25980 53.333 300 138 2 28 325 27 326 1.08e-112 330
MS.gene01164.t1 AT3G01190 48.276 319 154 6 9 325 12 321 4.31e-95 285
MS.gene01164.t1 AT1G77100 46.250 320 163 3 9 325 6 319 1.03e-94 284
MS.gene01164.t1 AT4G11290 46.296 324 163 6 8 325 8 326 7.35e-93 279
MS.gene01164.t1 AT5G17820 45.538 325 164 5 1 325 2 313 2.68e-91 275
MS.gene01164.t1 AT5G17820 45.538 325 164 5 1 325 55 366 3.06e-90 274
MS.gene01164.t1 AT1G05260 47.020 302 153 5 28 325 27 325 6.33e-90 272
MS.gene01164.t1 AT1G05240 45.333 300 159 4 29 325 28 325 8.87e-90 271
MS.gene01164.t1 AT1G05250 45.333 300 159 4 29 325 28 325 8.87e-90 271
MS.gene01164.t1 AT5G15180 44.410 322 170 5 9 325 12 329 6.04e-89 270
MS.gene01164.t1 AT5G39580 65.979 194 66 0 5 198 3 196 1.39e-87 263
MS.gene01164.t1 AT5G42180 43.450 313 167 3 12 321 8 313 1.33e-85 260
MS.gene01164.t1 AT5G19880 45.427 328 161 8 8 325 10 329 1.69e-85 261
MS.gene01164.t1 AT5G06720 43.902 328 171 6 5 325 12 333 1.06e-84 259
MS.gene01164.t1 AT4G08770 45.426 317 155 9 20 325 18 327 1.04e-83 256
MS.gene01164.t1 AT4G08780 44.479 317 158 8 20 325 18 327 4.65e-83 255
MS.gene01164.t1 AT4G36430 45.033 302 156 5 30 325 33 330 6.14e-83 254
MS.gene01164.t1 AT5G19890 44.667 300 155 4 31 325 34 327 1.95e-82 253
MS.gene01164.t1 AT4G26010 44.237 321 157 7 9 325 7 309 2.59e-82 252
MS.gene01164.t1 AT4G26010 44.237 321 157 7 9 325 35 337 4.17e-82 252
MS.gene01164.t1 AT3G50990 46.179 301 152 5 31 325 45 341 5.40e-82 252
MS.gene01164.t1 AT5G06730 43.385 325 171 6 10 325 14 334 1.20e-81 252
MS.gene01164.t1 AT4G33420 42.056 321 170 5 8 325 18 325 1.97e-81 250
MS.gene01164.t1 AT2G18150 44.040 302 159 5 30 325 39 336 2.14e-81 250
MS.gene01164.t1 AT5G14130 47.000 300 149 5 31 325 36 330 3.39e-81 249
MS.gene01164.t1 AT4G33420 42.056 321 170 5 8 325 65 372 9.04e-81 250
MS.gene01164.t1 AT5G14130 47.000 300 149 5 31 325 77 371 1.07e-80 250
MS.gene01164.t1 AT2G18140 43.854 301 159 5 31 325 39 335 2.21e-79 245
MS.gene01164.t1 AT2G38380 45.425 306 155 6 28 325 32 333 2.81e-79 245
MS.gene01164.t1 AT5G66390 44.186 301 158 5 31 325 37 333 3.68e-79 244
MS.gene01164.t1 AT3G03670 42.679 321 173 4 9 325 8 321 3.88e-79 244
MS.gene01164.t1 AT5G22410 43.421 304 160 6 23 321 25 321 3.89e-79 244
MS.gene01164.t1 AT1G49570 45.016 311 155 7 23 321 40 346 7.12e-79 244
MS.gene01164.t1 AT1G44970 45.695 302 153 5 31 325 49 346 3.85e-78 242
MS.gene01164.t1 AT1G14550 41.641 329 172 8 6 325 4 321 5.34e-78 241
MS.gene01164.t1 AT5G51890 42.236 322 170 7 2 318 5 315 6.61e-78 241
MS.gene01164.t1 AT3G21770 42.809 299 164 5 28 322 30 325 1.18e-77 241
MS.gene01164.t1 AT2G38390 44.118 306 159 6 28 325 32 333 1.21e-77 241
MS.gene01164.t1 AT5G05340 43.312 314 159 6 19 325 23 324 3.81e-77 239
MS.gene01164.t1 AT4G31760 41.925 322 174 4 10 325 12 326 8.62e-77 238
MS.gene01164.t1 AT5G24070 42.809 299 159 5 33 325 43 335 1.70e-76 238
MS.gene01164.t1 AT4G16270 45.033 302 154 6 30 325 53 348 1.56e-75 236
MS.gene01164.t1 AT3G49120 43.607 305 157 7 31 325 36 335 2.34e-75 236
MS.gene01164.t1 AT1G30870 43.894 303 154 4 29 325 53 345 5.56e-75 234
MS.gene01164.t1 AT3G32980 43.279 305 158 8 31 325 35 334 8.02e-74 231
MS.gene01164.t1 AT2G43480 42.617 298 159 5 34 325 44 335 1.00e-72 228
MS.gene01164.t1 AT1G14540 40.549 328 175 8 4 325 2 315 2.36e-72 226
MS.gene01164.t1 AT3G49110 42.295 305 161 7 31 325 37 336 9.59e-72 226
MS.gene01164.t1 AT4G37530 40.523 306 170 5 28 325 28 329 1.59e-71 225
MS.gene01164.t1 AT1G71695 42.208 308 161 6 25 325 42 339 8.80e-71 224
MS.gene01164.t1 AT2G24800 44.333 300 157 5 31 325 35 329 1.14e-70 223
MS.gene01164.t1 AT2G39040 43.689 309 158 7 28 325 47 350 1.54e-70 223
MS.gene01164.t1 AT4G33870 36.858 331 166 5 31 322 72 398 2.00e-70 224
MS.gene01164.t1 AT2G18980 39.450 327 185 6 4 325 5 323 2.98e-70 221
MS.gene01164.t1 AT2G35380 41.964 336 183 7 1 325 1 335 6.32e-69 218
MS.gene01164.t1 AT4G37520 39.216 306 174 5 28 325 28 329 9.14e-69 218
MS.gene01164.t1 AT1G68850 37.092 337 185 10 11 325 4 335 2.68e-68 217
MS.gene01164.t1 AT5G58400 40.361 332 179 7 2 325 5 325 3.10e-68 216
MS.gene01164.t1 AT1G34510 39.252 321 170 7 9 325 10 309 5.75e-68 215
MS.gene01164.t1 AT5G67400 38.182 330 191 6 4 325 5 329 2.70e-67 214
MS.gene01164.t1 AT4G17690 40.728 302 163 6 31 325 30 322 1.45e-66 212
MS.gene01164.t1 AT3G49960 37.160 331 192 7 6 325 4 329 1.69e-66 212
MS.gene01164.t1 AT4G37520 38.562 306 173 6 28 325 28 326 2.14e-66 211
MS.gene01164.t1 AT2G22420 36.562 320 191 6 11 325 7 319 3.33e-66 211
MS.gene01164.t1 AT4G30170 38.614 303 176 5 28 325 28 325 5.03e-66 211
MS.gene01164.t1 AT3G28200 39.474 304 163 7 31 325 25 316 5.90e-66 210
MS.gene01164.t1 AT5G40150 39.474 304 168 7 29 325 34 328 1.01e-64 207
MS.gene01164.t1 AT5G47000 37.994 329 187 7 6 325 10 330 2.22e-64 207
MS.gene01164.t1 AT2G34060 40.461 304 167 7 31 324 46 345 1.07e-63 205
MS.gene01164.t1 AT5G58390 36.778 329 187 7 5 325 1 316 2.10e-62 201
MS.gene01164.t1 AT4G25980 57.669 163 68 1 28 189 72 234 7.34e-62 199
MS.gene01164.t1 AT4G37530 40.711 253 142 4 28 272 28 280 3.52e-59 192
MS.gene01164.t1 AT1G24110 37.954 303 174 7 31 325 26 322 3.43e-57 188
MS.gene01164.t1 AT3G17070 35.650 331 193 8 3 321 13 335 2.22e-55 184
MS.gene01164.t1 AT4G21960 35.505 307 182 5 26 325 30 327 1.63e-54 181
MS.gene01164.t1 AT2G37130 33.443 305 186 7 29 325 1 296 7.76e-49 165
MS.gene01164.t1 AT2G37130 33.443 305 186 7 29 325 32 327 1.62e-48 165
MS.gene01164.t1 AT2G35380 41.532 248 135 5 85 325 3 247 1.94e-47 160
MS.gene01164.t1 AT2G24800 53.165 158 73 1 31 187 35 192 3.91e-46 157
MS.gene01164.t1 AT3G17070 35.985 264 149 8 69 321 18 272 1.03e-40 144
MS.gene01164.t1 AT3G42570 37.143 105 64 2 85 187 43 147 1.73e-13 67.4

Find 66 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACATTTAACGTAGAATT+TGG 0.149018 2.1:+73994949 MS.gene01164:CDS
AATGGAGGGTAGTTTGTTTA+AGG 0.178556 2.1:+73993680 None:intergenic
TGTTAACTCTGATTCTTCTT+TGG 0.220724 2.1:+73993830 MS.gene01164:CDS
CTTAGTTGGCAAGTTCCTAC+TGG 0.318941 2.1:+73994391 MS.gene01164:CDS
TCTGATTCTTCTTTGGCTCC+TGG 0.343590 2.1:+73993837 MS.gene01164:CDS
TGCTCGTGATTCCGTTGTTC+TGG 0.344793 2.1:+73994055 MS.gene01164:CDS
CTTTGGCTCCTGGTTTACTT+AGG 0.355089 2.1:+73993847 MS.gene01164:CDS
AAAATAGTGGTGCTACAAAC+AGG 0.361315 2.1:+73994767 MS.gene01164:CDS
GACGCTTCTGTTCTCGTTGC+CGG 0.364100 2.1:+73993903 MS.gene01164:CDS
GACATTTGTGCAAAGATACT+TGG 0.375629 2.1:+73994906 MS.gene01164:CDS
AACAGGGTTGCATTTGATAC+TGG 0.377242 2.1:+73994784 MS.gene01164:CDS
TCTGTTCTCGTTGCCGGCTC+AGG 0.395217 2.1:+73993909 MS.gene01164:CDS
CAAAGATACTTGGGTATAAG+AGG 0.398661 2.1:+73994916 MS.gene01164:CDS
TTTGCAAACCTTGGTTTAAG+AGG 0.405321 2.1:+73993948 MS.gene01164:CDS
CGTAGAATTTGGAAAATCAA+TGG 0.430451 2.1:+73994960 MS.gene01164:CDS
TTGAGAAACTTCACTACAAA+TGG 0.433202 2.1:+73994685 MS.gene01164:CDS
AAACAAAAGTTTGCAGCAAA+AGG 0.445746 2.1:+73994490 MS.gene01164:CDS
TACTATGCTAATTTGAGAAA+CGG 0.447597 2.1:+73994832 MS.gene01164:CDS
ATTATAGGTGGACATACAAT+TGG 0.460057 2.1:+73994631 MS.gene01164:intron
TTGGGTATAAGAGGGTTGCT+TGG 0.466005 2.1:+73994925 MS.gene01164:CDS
AAGCTCGAGGCTGCATGTCC+CGG 0.480410 2.1:+73993999 MS.gene01164:CDS
ATTTAGATCTCTTACCAACT+AGG 0.485780 2.1:-73994537 None:intergenic
TGTAATTGTGAAAGAAATGA+AGG 0.486800 2.1:-73994730 None:intergenic
AACCTTGGACAAAACAATCA+TGG 0.497537 2.1:-73993878 None:intergenic
TGAAAGCAGAACATATCTTC+CGG 0.498490 2.1:-73995029 None:intergenic
TGTAGAGTGGTGGTCTTAGT+TGG 0.498865 2.1:+73994377 MS.gene01164:intron
CAAGACCTTGTCACCCTAGT+TGG 0.504691 2.1:+73994523 MS.gene01164:CDS
CTTCAAAACCTCTTAAACCA+AGG 0.505092 2.1:-73993956 None:intergenic
ACACTTTGTCCTCAAAATAG+TGG 0.511975 2.1:+73994754 MS.gene01164:CDS
AAAACAGCATTTGCAAACCT+TGG 0.514744 2.1:+73993939 MS.gene01164:CDS
CTGGTACTGATGGTGAAATC+CGG 0.518299 2.1:+73995010 MS.gene01164:CDS
TTTAGATCTCTTACCAACTA+GGG 0.521835 2.1:-73994536 None:intergenic
AGAAATGAAGGGTCTATTGA+AGG 0.524815 2.1:-73994718 None:intergenic
CAGAGACGGACGCGTGTCAC+AGG 0.525113 2.1:+73994417 MS.gene01164:CDS
GAACAGAAGCGTCACAACCT+TGG 0.526096 2.1:-73993893 None:intergenic
AACGGAATCACGAGCAGCAA+GGG 0.540446 2.1:-73994048 None:intergenic
TTAGTTGGCAAGTTCCTACT+GGG 0.543556 2.1:+73994392 MS.gene01164:CDS
AGCAACATTGGAGTGAAGAC+TGG 0.545709 2.1:+73994991 MS.gene01164:CDS
AAGAAGAATCAGAGTTAACA+TGG 0.553242 2.1:-73993827 None:intergenic
GTTCCTACTGGGCGCAGAGA+CGG 0.561016 2.1:+73994403 MS.gene01164:CDS
CGTCCGTCTCTGCGCCCAGT+AGG 0.568492 2.1:-73994406 None:intergenic
GCTAATTTGAGAAACGGACG+TGG 0.577742 2.1:+73994838 MS.gene01164:CDS
ATCAACAGAATCACTAGGCG+CGG 0.581056 2.1:-73994461 None:intergenic
ACATTTGTGCAAAGATACTT+GGG 0.583884 2.1:+73994907 MS.gene01164:CDS
AATACATTAGTGCATGGACA+AGG 0.588441 2.1:+73993735 MS.gene01164:CDS
TTCAATCTGATCAAGCATTG+TGG 0.589362 2.1:+73994866 MS.gene01164:CDS
CAACGGAATCACGAGCAGCA+AGG 0.592899 2.1:-73994049 None:intergenic
TGTAACTGTGGACTTAACAA+TGG 0.607392 2.1:-73993802 None:intergenic
GTAATTGTGAAAGAAATGAA+GGG 0.614696 2.1:-73994729 None:intergenic
AAGTGCATCCTAAGTAAACC+AGG 0.621031 2.1:-73993855 None:intergenic
CATGGACAAGGGACACGTGT+AGG 0.625095 2.1:+73993747 MS.gene01164:CDS
ATCAGCACAAGAAACAACAC+CGG 0.631870 2.1:-73994018 None:intergenic
AAATAGTGGTGCTACAAACA+GGG 0.634740 2.1:+73994768 MS.gene01164:CDS
TCAACAGAATCACTAGGCGC+GGG 0.638917 2.1:-73994460 None:intergenic
AAAGATACTTGGGTATAAGA+GGG 0.648121 2.1:+73994917 MS.gene01164:CDS
TCAGCACAAGAAACAACACC+GGG 0.649313 2.1:-73994017 None:intergenic
TCTTACCAACTAGGGTGACA+AGG 0.661482 2.1:-73994528 None:intergenic
ATTGTGAATACATTAGTGCA+TGG 0.665947 2.1:+73993729 MS.gene01164:CDS
GTTAACATGGGATGTAACTG+TGG 0.675622 2.1:-73993814 None:intergenic
TTAGATAATTACCAGAACAA+CGG 0.678980 2.1:-73994066 None:intergenic
AGAAGAATCAGAGTTAACAT+GGG 0.684342 2.1:-73993826 None:intergenic
TGCACATCAACAGAATCACT+AGG 0.689909 2.1:-73994466 None:intergenic
GGAGTGAAGACTGGTACTGA+TGG 0.699391 2.1:+73995000 MS.gene01164:CDS
TGATGCTAAGACAAAGCTCG+AGG 0.701217 2.1:+73993986 MS.gene01164:CDS
ATGTATGCAATGTAGAGTGG+TGG 0.712684 2.1:+73994367 MS.gene01164:intron
ATACATTAGTGCATGGACAA+GGG 0.712858 2.1:+73993736 MS.gene01164:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCTATGAATATATTAT+AGG + chr2.1:73994616-73994635 MS.gene01164:intron 10.0%
!!! ATATTGATCTTTAATTTTGA+TGG - chr2.1:73994204-73994223 None:intergenic 15.0%
!! ATTGCATACATAAATCAATT+AGG - chr2.1:73994358-73994377 None:intergenic 20.0%
!! TTAACATTTAACGTAGAATT+TGG + chr2.1:73994949-73994968 MS.gene01164:CDS 20.0%
!! TTCTATGAATATATTATAGG+TGG + chr2.1:73994619-73994638 MS.gene01164:intron 20.0%
!!! AAGTTCAAAATTTGTTGAAA+TGG + chr2.1:73994331-73994350 MS.gene01164:intron 20.0%
! GTAATTGTGAAAGAAATGAA+GGG - chr2.1:73994732-73994751 None:intergenic 25.0%
! TACTATGCTAATTTGAGAAA+CGG + chr2.1:73994832-73994851 MS.gene01164:CDS 25.0%
! TGTAATTGTGAAAGAAATGA+AGG - chr2.1:73994733-73994752 None:intergenic 25.0%
! TTAGATAATTACCAGAACAA+CGG - chr2.1:73994069-73994088 None:intergenic 25.0%
!! TTCAATATGTAATTCTAGAG+TGG - chr2.1:73994581-73994600 None:intergenic 25.0%
!!! GTGTTTCTTTTACTTGTTTT+TGG + chr2.1:73993705-73993724 MS.gene01164:CDS 25.0%
AAACAAAAGTTTGCAGCAAA+AGG + chr2.1:73994490-73994509 MS.gene01164:CDS 30.0%
AAAGATACTTGGGTATAAGA+GGG + chr2.1:73994917-73994936 MS.gene01164:CDS 30.0%
AAGAAGAATCAGAGTTAACA+TGG - chr2.1:73993830-73993849 None:intergenic 30.0%
ACATTTGTGCAAAGATACTT+GGG + chr2.1:73994907-73994926 MS.gene01164:CDS 30.0%
AGAAGAATCAGAGTTAACAT+GGG - chr2.1:73993829-73993848 None:intergenic 30.0%
ATGGTAAAAATGAGCAACAT+TGG + chr2.1:73994979-73994998 MS.gene01164:CDS 30.0%
ATTATAGGTGGACATACAAT+TGG + chr2.1:73994631-73994650 MS.gene01164:intron 30.0%
ATTGTGAATACATTAGTGCA+TGG + chr2.1:73993729-73993748 MS.gene01164:CDS 30.0%
ATTTAGATCTCTTACCAACT+AGG - chr2.1:73994540-73994559 None:intergenic 30.0%
CGTAGAATTTGGAAAATCAA+TGG + chr2.1:73994960-73994979 MS.gene01164:CDS 30.0%
TGTTAACTCTGATTCTTCTT+TGG + chr2.1:73993830-73993849 MS.gene01164:CDS 30.0%
TTGAGAAACTTCACTACAAA+TGG + chr2.1:73994685-73994704 MS.gene01164:CDS 30.0%
TTTAGATCTCTTACCAACTA+GGG - chr2.1:73994539-73994558 None:intergenic 30.0%
TTTATGTATGCAATGTAGAG+TGG + chr2.1:73994364-73994383 MS.gene01164:intron 30.0%
AAAACAGCATTTGCAAACCT+TGG + chr2.1:73993939-73993958 MS.gene01164:CDS 35.0%
AACCTTGGACAAAACAATCA+TGG - chr2.1:73993881-73993900 None:intergenic 35.0%
AATACATTAGTGCATGGACA+AGG + chr2.1:73993735-73993754 MS.gene01164:CDS 35.0%
ACACTTTGTCCTCAAAATAG+TGG + chr2.1:73994754-73994773 MS.gene01164:CDS 35.0%
AGAAATGAAGGGTCTATTGA+AGG - chr2.1:73994721-73994740 None:intergenic 35.0%
ATACATTAGTGCATGGACAA+GGG + chr2.1:73993736-73993755 MS.gene01164:CDS 35.0%
CAAAGATACTTGGGTATAAG+AGG + chr2.1:73994916-73994935 MS.gene01164:CDS 35.0%
CTTCAAAACCTCTTAAACCA+AGG - chr2.1:73993959-73993978 None:intergenic 35.0%
GACATTTGTGCAAAGATACT+TGG + chr2.1:73994906-73994925 MS.gene01164:CDS 35.0%
TGAAAGCAGAACATATCTTC+CGG - chr2.1:73995032-73995051 None:intergenic 35.0%
TGTAACTGTGGACTTAACAA+TGG - chr2.1:73993805-73993824 None:intergenic 35.0%
TTTGCAAACCTTGGTTTAAG+AGG + chr2.1:73993948-73993967 MS.gene01164:CDS 35.0%
! TTCAATCTGATCAAGCATTG+TGG + chr2.1:73994866-73994885 MS.gene01164:CDS 35.0%
! TTTGTAGCACCACTATTTTG+AGG - chr2.1:73994766-73994785 None:intergenic 35.0%
!! AAAATAGTGGTGCTACAAAC+AGG + chr2.1:73994767-73994786 MS.gene01164:CDS 35.0%
!! AAATAGTGGTGCTACAAACA+GGG + chr2.1:73994768-73994787 MS.gene01164:CDS 35.0%
!! TTCCATGATTGTTTTGTCCA+AGG + chr2.1:73993876-73993895 MS.gene01164:CDS 35.0%
!!! GTTTGCAAATGCTGTTTTCT+CGG - chr2.1:73993937-73993956 None:intergenic 35.0%
AACAGGGTTGCATTTGATAC+TGG + chr2.1:73994784-73994803 MS.gene01164:CDS 40.0%
AAGTGCATCCTAAGTAAACC+AGG - chr2.1:73993858-73993877 None:intergenic 40.0%
ATCAGCACAAGAAACAACAC+CGG - chr2.1:73994021-73994040 None:intergenic 40.0%
ATGTATGCAATGTAGAGTGG+TGG + chr2.1:73994367-73994386 MS.gene01164:intron 40.0%
GTTAACATGGGATGTAACTG+TGG - chr2.1:73993817-73993836 None:intergenic 40.0%
TGCACATCAACAGAATCACT+AGG - chr2.1:73994469-73994488 None:intergenic 40.0%
TTAGTTGGCAAGTTCCTACT+GGG + chr2.1:73994392-73994411 MS.gene01164:CDS 40.0%
AGCAACATTGGAGTGAAGAC+TGG + chr2.1:73994991-73995010 MS.gene01164:CDS 45.0%
ATCAACAGAATCACTAGGCG+CGG - chr2.1:73994464-73994483 None:intergenic 45.0%
CTTAGTTGGCAAGTTCCTAC+TGG + chr2.1:73994391-73994410 MS.gene01164:CDS 45.0%
GCTAATTTGAGAAACGGACG+TGG + chr2.1:73994838-73994857 MS.gene01164:CDS 45.0%
TCAGCACAAGAAACAACACC+GGG - chr2.1:73994020-73994039 None:intergenic 45.0%
TCTTACCAACTAGGGTGACA+AGG - chr2.1:73994531-73994550 None:intergenic 45.0%
TGATGCTAAGACAAAGCTCG+AGG + chr2.1:73993986-73994005 MS.gene01164:CDS 45.0%
TTGGGTATAAGAGGGTTGCT+TGG + chr2.1:73994925-73994944 MS.gene01164:CDS 45.0%
! CTTTGGCTCCTGGTTTACTT+AGG + chr2.1:73993847-73993866 MS.gene01164:CDS 45.0%
! TCTGATTCTTCTTTGGCTCC+TGG + chr2.1:73993837-73993856 MS.gene01164:CDS 45.0%
! TGTAGAGTGGTGGTCTTAGT+TGG + chr2.1:73994377-73994396 MS.gene01164:intron 45.0%
!! CTGGTACTGATGGTGAAATC+CGG + chr2.1:73995010-73995029 MS.gene01164:CDS 45.0%
AACGGAATCACGAGCAGCAA+GGG - chr2.1:73994051-73994070 None:intergenic 50.0%
CAAGACCTTGTCACCCTAGT+TGG + chr2.1:73994523-73994542 MS.gene01164:CDS 50.0%
TCAACAGAATCACTAGGCGC+GGG - chr2.1:73994463-73994482 None:intergenic 50.0%
TGCTCGTGATTCCGTTGTTC+TGG + chr2.1:73994055-73994074 MS.gene01164:CDS 50.0%
! GGAGTGAAGACTGGTACTGA+TGG + chr2.1:73995000-73995019 MS.gene01164:CDS 50.0%
!! GAACAGAAGCGTCACAACCT+TGG - chr2.1:73993896-73993915 None:intergenic 50.0%
CAACGGAATCACGAGCAGCA+AGG - chr2.1:73994052-73994071 None:intergenic 55.0%
CATGGACAAGGGACACGTGT+AGG + chr2.1:73993747-73993766 MS.gene01164:CDS 55.0%
GACGCTTCTGTTCTCGTTGC+CGG + chr2.1:73993903-73993922 MS.gene01164:CDS 55.0%
!!! TGTTTTCTCGGTGCCTGAGC+CGG - chr2.1:73993925-73993944 None:intergenic 55.0%
AAGCTCGAGGCTGCATGTCC+CGG + chr2.1:73993999-73994018 MS.gene01164:CDS 60.0%
GTTCCTACTGGGCGCAGAGA+CGG + chr2.1:73994403-73994422 MS.gene01164:CDS 60.0%
!! TCTGTTCTCGTTGCCGGCTC+AGG + chr2.1:73993909-73993928 MS.gene01164:CDS 60.0%
CAGAGACGGACGCGTGTCAC+AGG + chr2.1:73994417-73994436 MS.gene01164:CDS 65.0%
CGTCCGTCTCTGCGCCCAGT+AGG - chr2.1:73994409-73994428 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 73993681 73995056 73993681 ID=MS.gene01164
chr2.1 mRNA 73993681 73995056 73993681 ID=MS.gene01164.t1;Parent=MS.gene01164
chr2.1 exon 73993681 73994076 73993681 ID=MS.gene01164.t1.exon1;Parent=MS.gene01164.t1
chr2.1 CDS 73993681 73994076 73993681 ID=cds.MS.gene01164.t1;Parent=MS.gene01164.t1
chr2.1 exon 73994382 73994544 73994382 ID=MS.gene01164.t1.exon2;Parent=MS.gene01164.t1
chr2.1 CDS 73994382 73994544 73994382 ID=cds.MS.gene01164.t1;Parent=MS.gene01164.t1
chr2.1 exon 73994638 73995056 73994638 ID=MS.gene01164.t1.exon3;Parent=MS.gene01164.t1
chr2.1 CDS 73994638 73995056 73994638 ID=cds.MS.gene01164.t1;Parent=MS.gene01164.t1
Gene Sequence

>MS.gene01164

ATGGAGGGTAGTTTGTTTAAGGTTGTGTTTCTTTTACTTGTTTTTGGTATTGTGAATACATTAGTGCATGGACAAGGGACACGTGTAGGATTCTATTCAAGTACATGTTCTCAAGCAGAATCCATTGTTAAGTCCACAGTTACATCCCATGTTAACTCTGATTCTTCTTTGGCTCCTGGTTTACTTAGGATGCACTTCCATGATTGTTTTGTCCAAGGTTGTGACGCTTCTGTTCTCGTTGCCGGCTCAGGCACCGAGAAAACAGCATTTGCAAACCTTGGTTTAAGAGGTTTTGAAGTAATTGATGATGCTAAGACAAAGCTCGAGGCTGCATGTCCCGGTGTTGTTTCTTGTGCTGATATTCTTGCCCTTGCTGCTCGTGATTCCGTTGTTCTGGTAATTATCTAACTTAACTATATATTGTACAAATCATAGTAAAGAAGATACTGCTAGAAAATGTTGAATTAGTTACACAAATATAAATTTTATGTTCATGAATTTAGTCAAATATCTATTAGAACCATCAAAATTAAAGATCAATATTCATTTTTTTTTATATTAATAATTTAGTCATCTAACTTAACTATATAATAGTACAGAAAATTCGATCAATAAAATTGACATAAGTTGAATATATTACTTAGTGTAAGAAGTTCAAAATTTGTTGAAATGGACCTAATTGATTTATGTATGCAATGTAGAGTGGTGGTCTTAGTTGGCAAGTTCCTACTGGGCGCAGAGACGGACGCGTGTCACAGGCTTCTGATGTCAATAACTTGCCCGCGCCTAGTGATTCTGTTGATGTGCAGAAACAAAAGTTTGCAGCAAAAGGTCTTAACACTCAAGACCTTGTCACCCTAGTTGGTAAGAGATCTAAATATTTTCAAAATTTATGTACCACTCTAGAATTACATATTGAAGTTGCATTCACATTAATATTCTATGAATATATTATAGGTGGACATACAATTGGTACAACAGCATGTCAATTCTTCAGCAACAGATTGAGAAACTTCACTACAAATGGTGCAGCTGATCCTTCAATAGACCCTTCATTTCTTTCACAATTACAAACACTTTGTCCTCAAAATAGTGGTGCTACAAACAGGGTTGCATTTGATACTGGAAGTCAAAACAAATTTGATAATTCTTACTATGCTAATTTGAGAAACGGACGTGGAGTTCTTCAATCTGATCAAGCATTGTGGAATGATGCTTCGACAAAGACATTTGTGCAAAGATACTTGGGTATAAGAGGGTTGCTTGGATTAACATTTAACGTAGAATTTGGAAAATCAATGGTAAAAATGAGCAACATTGGAGTGAAGACTGGTACTGATGGTGAAATCCGGAAGATATGTTCTGCTTTCAACTAA
Protein sequence

>MS.gene01164.t1

MEGSLFKVVFLLLVFGIVNTLVHGQGTRVGFYSSTCSQAESIVKSTVTSHVNSDSSLAPGLLRMHFHDCFVQGCDASVLVAGSGTEKTAFANLGLRGFEVIDDAKTKLEAACPGVVSCADILALAARDSVVLSGGLSWQVPTGRRDGRVSQASDVNNLPAPSDSVDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFSNRLRNFTTNGAADPSIDPSFLSQLQTLCPQNSGATNRVAFDTGSQNKFDNSYYANLRNGRGVLQSDQALWNDASTKTFVQRYLGIRGLLGLTFNVEFGKSMVKMSNIGVKTGTDGEIRKICSAFN