Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012937.t1 | XP_003603098.1 | 97.2 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 1.40E-177 | 632.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012937.t1 | Q8GXG1 | 84.6 | 325 | 47 | 1 | 1 | 322 | 1 | 325 | 8.1e-158 | 557.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012937.t1 | G7J705 | 97.2 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 1.0e-177 | 632.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063515 | MS.gene012937 | PPI |
| MS.gene044476 | MS.gene012937 | PPI |
| MS.gene033042 | MS.gene012937 | PPI |
| MS.gene038825 | MS.gene012937 | PPI |
| MS.gene012937 | MS.gene033041 | PPI |
| MS.gene063514 | MS.gene012937 | PPI |
| MS.gene044475 | MS.gene012937 | PPI |
| MS.gene03345 | MS.gene012937 | PPI |
| MS.gene038824 | MS.gene012937 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012937.t1 | MTR_3g102370 | 97.205 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 0.0 | 644 |
| MS.gene012937.t1 | MTR_1g094030 | 87.578 | 322 | 38 | 1 | 1 | 322 | 1 | 320 | 0.0 | 581 |
| MS.gene012937.t1 | MTR_1g018760 | 86.769 | 325 | 40 | 2 | 1 | 322 | 1 | 325 | 0.0 | 575 |
| MS.gene012937.t1 | MTR_4g109900 | 59.317 | 322 | 123 | 2 | 3 | 321 | 2 | 318 | 2.23e-131 | 377 |
| MS.gene012937.t1 | MTR_4g109920 | 58.385 | 322 | 127 | 3 | 3 | 321 | 2 | 319 | 1.81e-128 | 370 |
| MS.gene012937.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 1.33e-25 | 105 |
| MS.gene012937.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 4.38e-25 | 104 |
| MS.gene012937.t1 | MTR_3g008180 | 28.175 | 252 | 158 | 6 | 67 | 297 | 77 | 326 | 4.92e-16 | 78.2 |
| MS.gene012937.t1 | MTR_8g031580 | 26.201 | 229 | 124 | 6 | 85 | 278 | 1 | 219 | 2.35e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012937.t1 | AT3G16150 | 84.615 | 325 | 47 | 1 | 1 | 322 | 1 | 325 | 0.0 | 568 |
| MS.gene012937.t1 | AT5G08100 | 58.025 | 324 | 121 | 3 | 1 | 321 | 1 | 312 | 2.56e-128 | 369 |
| MS.gene012937.t1 | AT5G08100 | 57.377 | 244 | 90 | 2 | 80 | 321 | 1 | 232 | 1.46e-94 | 280 |
| MS.gene012937.t1 | AT4G00590 | 27.019 | 322 | 174 | 8 | 6 | 282 | 15 | 320 | 2.37e-20 | 91.3 |
| MS.gene012937.t1 | AT5G61540 | 28.947 | 266 | 150 | 9 | 67 | 300 | 80 | 338 | 1.42e-17 | 82.8 |
| MS.gene012937.t1 | AT4G00590 | 26.282 | 312 | 174 | 8 | 6 | 282 | 15 | 305 | 9.17e-17 | 80.9 |
| MS.gene012937.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 9.23e-15 | 73.6 |
| MS.gene012937.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 9.23e-15 | 73.6 |
Find 90 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATGGAGGTTGGAATT+TGG | 0.172718 | 3.4:+89951865 | MS.gene012937:CDS |
| GTTCATGGAGGTTGGAATTT+GGG | 0.266618 | 3.4:+89951866 | MS.gene012937:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 3.4:+89951823 | MS.gene012937:CDS |
| TCTTATTGCTGTGTCTAATA+AGG | 0.277779 | 3.4:+89951782 | MS.gene012937:CDS |
| GCTTCTTCCTGACGGTGTTT+TGG | 0.278911 | 3.4:-89950556 | None:intergenic |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 3.4:+89951824 | MS.gene012937:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.294879 | 3.4:+89951798 | MS.gene012937:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 3.4:+89951759 | MS.gene012937:CDS |
| GGTTGGGCTATTGCTGTTCA+TGG | 0.339677 | 3.4:+89950508 | MS.gene012937:CDS |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 3.4:+89951534 | MS.gene012937:CDS |
| AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 3.4:+89951276 | MS.gene012937:CDS |
| AGAAGATGTGGTGCTGTATC+TGG | 0.390803 | 3.4:+89950992 | MS.gene012937:CDS |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 3.4:-89951248 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 3.4:+89951843 | MS.gene012937:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.407004 | 3.4:+89951799 | MS.gene012937:CDS |
| ATTGCTGTTCATGGCGGCGC+TGG | 0.414973 | 3.4:+89950517 | MS.gene012937:CDS |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 3.4:+89950943 | MS.gene012937:CDS |
| ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 3.4:-89950578 | None:intergenic |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 3.4:+89951813 | MS.gene012937:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 3.4:+89950589 | MS.gene012937:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 3.4:+89951073 | MS.gene012937:CDS |
| CTTATTGCTGTGTCTAATAA+GGG | 0.432612 | 3.4:+89951783 | MS.gene012937:CDS |
| ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 3.4:-89951034 | None:intergenic |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 3.4:-89951247 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 3.4:+89950929 | MS.gene012937:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 3.4:+89951750 | MS.gene012937:CDS |
| AACAAAATGAGTGGTCGAAT+CGG | 0.464428 | 3.4:+89951567 | MS.gene012937:CDS |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 3.4:+89951099 | MS.gene012937:CDS |
| GACGTCGAGTGCGGAAGCAT+TGG | 0.472505 | 3.4:-89950629 | None:intergenic |
| TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 3.4:+89951851 | MS.gene012937:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 3.4:-89951492 | None:intergenic |
| CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 3.4:+89951039 | MS.gene012937:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 3.4:+89951686 | MS.gene012937:CDS |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 3.4:-89951086 | None:intergenic |
| TAATCTTCCAAAACACCGTC+AGG | 0.500540 | 3.4:+89950549 | MS.gene012937:CDS |
| GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 3.4:+89951858 | MS.gene012937:CDS |
| ATCGGTGATTCACCTCTCAT+AGG | 0.503828 | 3.4:+89951585 | MS.gene012937:CDS |
| GTTCATTAGCCCTCCAGTTG+AGG | 0.507804 | 3.4:-89951547 | None:intergenic |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 3.4:+89951447 | MS.gene012937:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.508182 | 3.4:+89951591 | MS.gene012937:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 3.4:-89951092 | None:intergenic |
| GTGTGTGGAGTTTCTTGCAC+TGG | 0.514229 | 3.4:+89951630 | MS.gene012937:CDS |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 3.4:+89951844 | MS.gene012937:CDS |
| GGAGTTTCTTGCACTGGTGA+AGG | 0.536295 | 3.4:+89951636 | MS.gene012937:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 3.4:+89950958 | MS.gene012937:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 3.4:-89950593 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 3.4:+89951092 | MS.gene012937:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 3.4:+89951497 | MS.gene012937:CDS |
| GTTATGGAGTACAAAGGCTA+TGG | 0.546040 | 3.4:+89951702 | MS.gene012937:CDS |
| GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 3.4:-89950564 | None:intergenic |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 3.4:+89951674 | MS.gene012937:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 3.4:+89951238 | MS.gene012937:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 3.4:+89951825 | MS.gene012937:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 3.4:-89951070 | None:intergenic |
| CTATGGACTTCAACAAGCTG+TGG | 0.581002 | 3.4:+89951719 | MS.gene012937:CDS |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 3.4:+89951407 | MS.gene012937:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 3.4:+89951491 | MS.gene012937:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 3.4:+89951654 | MS.gene012937:CDS |
| TGTTCATGGCGGCGCTGGTG+TGG | 0.585081 | 3.4:+89950522 | MS.gene012937:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 3.4:+89951473 | MS.gene012937:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 3.4:-89951069 | None:intergenic |
| CCACGGCCAGAATTGAAAAG+TGG | 0.595287 | 3.4:-89950908 | None:intergenic |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 3.4:+89951751 | MS.gene012937:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 3.4:-89950925 | None:intergenic |
| GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 3.4:+89951537 | MS.gene012937:CDS |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 3.4:+89950934 | MS.gene012937:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 3.4:+89951204 | MS.gene012937:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 3.4:-89951499 | None:intergenic |
| TGTGTCTAATAAGGGTGAAG+TGG | 0.621047 | 3.4:+89951791 | MS.gene012937:CDS |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 3.4:+89950946 | MS.gene012937:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 3.4:+89951093 | MS.gene012937:CDS |
| CTGCTGCAACCTCAACTGGA+GGG | 0.626492 | 3.4:+89951538 | MS.gene012937:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 3.4:-89951068 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 3.4:+89951483 | MS.gene012937:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 3.4:+89950962 | MS.gene012937:CDS |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 3.4:-89951474 | None:intergenic |
| AAGTTCGACGACGTCGAGTG+CGG | 0.645430 | 3.4:-89950638 | None:intergenic |
| CGAGTGCGGAAGCATTGGAT+CGG | 0.648150 | 3.4:-89950624 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 3.4:-89951597 | None:intergenic |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 3.4:-89951081 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 3.4:+89951494 | MS.gene012937:CDS |
| GATGGTAACAAGAGAAGATG+TGG | 0.682088 | 3.4:+89950980 | MS.gene012937:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 3.4:+89951258 | MS.gene012937:CDS |
| TGGGCTATTGCTGTTCATGG+CGG | 0.684758 | 3.4:+89950511 | MS.gene012937:CDS |
| GCTGCAGTTATGGAGTACAA+AGG | 0.689411 | 3.4:+89951696 | MS.gene012937:CDS |
| ACTTATGCATGTGAAGTGTG+TGG | 0.696667 | 3.4:+89951615 | MS.gene012937:CDS |
| GGGCTAATGAACAAAATGAG+TGG | 0.699843 | 3.4:+89951558 | MS.gene012937:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 3.4:+89950937 | MS.gene012937:CDS |
| TGTGTGGTGGTGGACAGTCA+AGG | 0.729603 | 3.4:+89951507 | MS.gene012937:CDS |
| AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 3.4:+89951854 | MS.gene012937:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATAGATCAAAAAT+TGG | - | chr3.4:89951152-89951171 | None:intergenic | 10.0% |
| !! | AAATTATATTATTGTCATCA+TGG | - | chr3.4:89950795-89950814 | None:intergenic | 15.0% |
| !! | ATTTATATCATTCATAATCA+TGG | + | chr3.4:89950710-89950729 | MS.gene012937:intron | 15.0% |
| !! | GATTATGAATGATATAAATT+AGG | - | chr3.4:89950709-89950728 | None:intergenic | 15.0% |
| !! | TTTATATCATTCATAATCAT+GGG | + | chr3.4:89950711-89950730 | MS.gene012937:intron | 15.0% |
| !!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3.4:89951173-89951192 | MS.gene012937:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3.4:89950694-89950713 | None:intergenic | 20.0% |
| !! | TGAATGATATAAATTAGGTT+AGG | - | chr3.4:89950704-89950723 | None:intergenic | 20.0% |
| !! | TTATTAATGAATGTGTTTGA+TGG | + | chr3.4:89951373-89951392 | MS.gene012937:intron | 20.0% |
| !!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3.4:89950849-89950868 | MS.gene012937:intron | 20.0% |
| !!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3.4:89950848-89950867 | MS.gene012937:intron | 20.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr3.4:89951276-89951295 | MS.gene012937:CDS | 25.0% |
| ! | AACTATAGATTCGAAAATAC+CGG | - | chr3.4:89950824-89950843 | None:intergenic | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr3.4:89951335-89951354 | MS.gene012937:intron | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr3.4:89951825-89951844 | MS.gene012937:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr3.4:89951824-89951843 | MS.gene012937:CDS | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr3.4:89951823-89951842 | MS.gene012937:CDS | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3.4:89951190-89951209 | MS.gene012937:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3.4:89951189-89951208 | MS.gene012937:intron | 25.0% |
| !!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3.4:89950865-89950884 | MS.gene012937:intron | 25.0% |
| CTTATTGCTGTGTCTAATAA+GGG | + | chr3.4:89951783-89951802 | MS.gene012937:CDS | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr3.4:89951407-89951426 | MS.gene012937:intron | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr3.4:89951377-89951396 | MS.gene012937:intron | 30.0% | |
| TCATTCATAATCATGGGAAA+AGG | + | chr3.4:89950717-89950736 | MS.gene012937:intron | 30.0% | |
| TCTTATTGCTGTGTCTAATA+AGG | + | chr3.4:89951782-89951801 | MS.gene012937:CDS | 30.0% | |
| TTTCAGCATACCAACATTAT+CGG | - | chr3.4:89951251-89951270 | None:intergenic | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3.4:89951026-89951045 | None:intergenic | 30.0% |
| AACAAAATGAGTGGTCGAAT+CGG | + | chr3.4:89951567-89951586 | MS.gene012937:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr3.4:89950596-89950615 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr3.4:89951447-89951466 | MS.gene012937:CDS | 35.0% | |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr3.4:89951813-89951832 | MS.gene012937:CDS | 35.0% | |
| GTTTATTACGGAAGAGACAT+GGG | - | chr3.4:89950682-89950701 | None:intergenic | 35.0% | |
| TTCAGCATACCAACATTATC+GGG | - | chr3.4:89951250-89951269 | None:intergenic | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3.4:89951750-89951769 | MS.gene012937:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3.4:89951751-89951770 | MS.gene012937:CDS | 35.0% |
| !! | ACAGATCCACTTTTCAATTC+TGG | + | chr3.4:89950902-89950921 | MS.gene012937:CDS | 35.0% |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr3.4:89951798-89951817 | MS.gene012937:CDS | 40.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr3.4:89950581-89950600 | None:intergenic | 40.0% | |
| ACTTATGCATGTGAAGTGTG+TGG | + | chr3.4:89951615-89951634 | MS.gene012937:CDS | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3.4:89951799-89951818 | MS.gene012937:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr3.4:89951420-89951439 | MS.gene012937:CDS | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr3.4:89950589-89950608 | MS.gene012937:CDS | 40.0% | |
| GATGGTAACAAGAGAAGATG+TGG | + | chr3.4:89950980-89950999 | MS.gene012937:CDS | 40.0% | |
| GGGCTAATGAACAAAATGAG+TGG | + | chr3.4:89951558-89951577 | MS.gene012937:CDS | 40.0% | |
| GGTTTATTACGGAAGAGACA+TGG | - | chr3.4:89950683-89950702 | None:intergenic | 40.0% | |
| GTTATGGAGTACAAAGGCTA+TGG | + | chr3.4:89951702-89951721 | MS.gene012937:CDS | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr3.4:89951866-89951885 | MS.gene012937:CDS | 40.0% | |
| TAATCTTCCAAAACACCGTC+AGG | + | chr3.4:89950549-89950568 | MS.gene012937:CDS | 40.0% | |
| TGTGTCTAATAAGGGTGAAG+TGG | + | chr3.4:89951791-89951810 | MS.gene012937:CDS | 40.0% | |
| TTCATCACTCCCGATAATGT+TGG | + | chr3.4:89951238-89951257 | MS.gene012937:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr3.4:89951023-89951042 | None:intergenic | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3.4:89951099-89951118 | MS.gene012937:CDS | 40.0% |
| !!! | TGACGGTGTTTTGGAAGATT+AGG | - | chr3.4:89950550-89950569 | None:intergenic | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr3.4:89950946-89950965 | MS.gene012937:CDS | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr3.4:89951089-89951108 | None:intergenic | 45.0% | |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr3.4:89951037-89951056 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr3.4:89951072-89951091 | None:intergenic | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr3.4:89950943-89950962 | MS.gene012937:CDS | 45.0% | |
| ATCGGTGATTCACCTCTCAT+AGG | + | chr3.4:89951585-89951604 | MS.gene012937:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr3.4:89950962-89950981 | MS.gene012937:CDS | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr3.4:89951095-89951114 | None:intergenic | 45.0% | |
| CTATGGACTTCAACAAGCTG+TGG | + | chr3.4:89951719-89951738 | MS.gene012937:CDS | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr3.4:89951654-89951673 | MS.gene012937:CDS | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr3.4:89951696-89951715 | MS.gene012937:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr3.4:89950958-89950977 | MS.gene012937:CDS | 45.0% | |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr3.4:89951865-89951884 | MS.gene012937:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr3.4:89951600-89951619 | None:intergenic | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr3.4:89950934-89950953 | MS.gene012937:CDS | 45.0% | |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr3.4:89951258-89951277 | MS.gene012937:CDS | 45.0% | |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr3.4:89951854-89951873 | MS.gene012937:CDS | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr3.4:89951456-89951475 | None:intergenic | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr3.4:89951426-89951445 | None:intergenic | 45.0% |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr3.4:89951380-89951399 | MS.gene012937:intron | 45.0% |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3.4:89951851-89951870 | MS.gene012937:CDS | 45.0% |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr3.4:89950992-89951011 | MS.gene012937:CDS | 45.0% |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3.4:89951093-89951112 | MS.gene012937:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3.4:89951195-89951214 | MS.gene012937:intron | 45.0% |
| !!! | AATAATATAATTTTTTAATC+CGG | + | chr3.4:89950802-89950821 | MS.gene012937:intron | 5.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3.4:89951686-89951705 | MS.gene012937:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr3.4:89951843-89951862 | MS.gene012937:CDS | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr3.4:89951073-89951092 | MS.gene012937:CDS | 50.0% | |
| CCACGGCCAGAATTGAAAAG+TGG | - | chr3.4:89950911-89950930 | None:intergenic | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr3.4:89951759-89951778 | MS.gene012937:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3.4:89951039-89951058 | MS.gene012937:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr3.4:89951071-89951090 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr3.4:89951073-89951092 | None:intergenic | 50.0% | |
| GATTCACCTCTCATAGGTGC+TGG | + | chr3.4:89951591-89951610 | MS.gene012937:CDS | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr3.4:89950929-89950948 | MS.gene012937:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr3.4:89951844-89951863 | MS.gene012937:CDS | 50.0% | |
| GTGTGTGGAGTTTCTTGCAC+TGG | + | chr3.4:89951630-89951649 | MS.gene012937:CDS | 50.0% | |
| GTTCATTAGCCCTCCAGTTG+AGG | - | chr3.4:89951550-89951569 | None:intergenic | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr3.4:89950937-89950956 | MS.gene012937:CDS | 50.0% | |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr3.4:89950928-89950947 | None:intergenic | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3.4:89951092-89951111 | MS.gene012937:CDS | 50.0% |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3.4:89951858-89951877 | MS.gene012937:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3.4:89950567-89950586 | None:intergenic | 50.0% |
| ! | GCTTCTTCCTGACGGTGTTT+TGG | - | chr3.4:89950559-89950578 | None:intergenic | 50.0% |
| ! | GGAGTTTCTTGCACTGGTGA+AGG | + | chr3.4:89951636-89951655 | MS.gene012937:CDS | 50.0% |
| ! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3.4:89950508-89950527 | MS.gene012937:CDS | 50.0% |
| ! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3.4:89950511-89950530 | MS.gene012937:CDS | 50.0% |
| !! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3.4:89950908-89950927 | MS.gene012937:CDS | 50.0% |
| AAGTTCGACGACGTCGAGTG+CGG | - | chr3.4:89950641-89950660 | None:intergenic | 55.0% | |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr3.4:89951538-89951557 | MS.gene012937:CDS | 55.0% | |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr3.4:89951477-89951496 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr3.4:89951674-89951693 | MS.gene012937:CDS | 55.0% | |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3.4:89951534-89951553 | MS.gene012937:CDS | 55.0% |
| !! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3.4:89950627-89950646 | None:intergenic | 55.0% |
| !! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3.4:89951507-89951526 | MS.gene012937:CDS | 55.0% |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3.4:89951204-89951223 | MS.gene012937:intron | 55.0% |
| ACCACACATCCGACGGTCTC+CGG | - | chr3.4:89951495-89951514 | None:intergenic | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr3.4:89951483-89951502 | MS.gene012937:CDS | 60.0% | |
| GCCGATGAGCATTTACGCGC+CGG | + | chr3.4:89951473-89951492 | MS.gene012937:CDS | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr3.4:89951537-89951556 | MS.gene012937:CDS | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr3.4:89951502-89951521 | None:intergenic | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3.4:89950517-89950536 | MS.gene012937:CDS | 60.0% |
| ! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3.4:89950632-89950651 | None:intergenic | 60.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr3.4:89951084-89951103 | None:intergenic | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr3.4:89951497-89951516 | MS.gene012937:CDS | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr3.4:89951494-89951513 | MS.gene012937:CDS | 65.0% | |
| !! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3.4:89950522-89950541 | MS.gene012937:CDS | 65.0% |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr3.4:89951491-89951510 | MS.gene012937:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89950502 | 89951893 | 89950502 | ID=MS.gene012937 |
| chr3.4 | mRNA | 89950502 | 89951893 | 89950502 | ID=MS.gene012937.t1;Parent=MS.gene012937 |
| chr3.4 | exon | 89950502 | 89950663 | 89950502 | ID=MS.gene012937.t1.exon1;Parent=MS.gene012937.t1 |
| chr3.4 | CDS | 89950502 | 89950663 | 89950502 | ID=cds.MS.gene012937.t1;Parent=MS.gene012937.t1 |
| chr3.4 | exon | 89950887 | 89951120 | 89950887 | ID=MS.gene012937.t1.exon2;Parent=MS.gene012937.t1 |
| chr3.4 | CDS | 89950887 | 89951120 | 89950887 | ID=cds.MS.gene012937.t1;Parent=MS.gene012937.t1 |
| chr3.4 | exon | 89951211 | 89951297 | 89951211 | ID=MS.gene012937.t1.exon3;Parent=MS.gene012937.t1 |
| chr3.4 | CDS | 89951211 | 89951297 | 89951211 | ID=cds.MS.gene012937.t1;Parent=MS.gene012937.t1 |
| chr3.4 | exon | 89951408 | 89951893 | 89951408 | ID=MS.gene012937.t1.exon4;Parent=MS.gene012937.t1 |
| chr3.4 | CDS | 89951408 | 89951893 | 89951408 | ID=cds.MS.gene012937.t1;Parent=MS.gene012937.t1 |
| Gene Sequence |
| Protein sequence |
