Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013399.t1 | XP_003602463.1 | 97.8 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 1.10E-169 | 605.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013399.t1 | Q9FLC0 | 73.0 | 318 | 82 | 1 | 9 | 322 | 7 | 324 | 2.4e-125 | 449.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013399.t1 | G7J9S2 | 97.8 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 7.8e-170 | 605.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene98878 | MS.gene013399 | PPI |
MS.gene41565 | MS.gene013399 | PPI |
MS.gene009689 | MS.gene013399 | PPI |
MS.gene26286 | MS.gene013399 | PPI |
MS.gene049488 | MS.gene013399 | PPI |
MS.gene49484 | MS.gene013399 | PPI |
MS.gene38511 | MS.gene013399 | PPI |
MS.gene008562 | MS.gene013399 | PPI |
MS.gene26287 | MS.gene013399 | PPI |
MS.gene017208 | MS.gene013399 | PPI |
MS.gene017207 | MS.gene013399 | PPI |
MS.gene009691 | MS.gene013399 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013399.t1 | MTR_3g094670 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 640 |
MS.gene013399.t1 | MTR_3g094650 | 87.888 | 322 | 39 | 0 | 1 | 322 | 1 | 322 | 0.0 | 577 |
MS.gene013399.t1 | MTR_3g094630 | 91.925 | 322 | 26 | 0 | 1 | 322 | 1 | 322 | 0.0 | 566 |
MS.gene013399.t1 | MTR_5g083860 | 78.914 | 313 | 65 | 1 | 11 | 322 | 13 | 325 | 0.0 | 505 |
MS.gene013399.t1 | MTR_3g466200 | 67.834 | 314 | 100 | 1 | 10 | 322 | 7 | 320 | 4.97e-160 | 449 |
MS.gene013399.t1 | MTR_2g084080 | 66.987 | 312 | 101 | 1 | 11 | 322 | 8 | 317 | 1.01e-152 | 431 |
MS.gene013399.t1 | MTR_2g084020 | 65.325 | 323 | 106 | 3 | 1 | 322 | 1 | 318 | 2.91e-149 | 422 |
MS.gene013399.t1 | MTR_2g084110 | 65.064 | 312 | 107 | 1 | 11 | 322 | 8 | 317 | 6.04e-149 | 421 |
MS.gene013399.t1 | MTR_2g084010 | 65.015 | 323 | 107 | 3 | 1 | 322 | 1 | 318 | 1.45e-147 | 418 |
MS.gene013399.t1 | MTR_2g084090 | 64.744 | 312 | 109 | 1 | 11 | 322 | 8 | 318 | 1.71e-146 | 415 |
MS.gene013399.t1 | MTR_5g074970 | 64.309 | 311 | 108 | 3 | 14 | 322 | 17 | 326 | 9.39e-144 | 409 |
MS.gene013399.t1 | MTR_2g084000 | 61.146 | 314 | 118 | 3 | 11 | 322 | 8 | 319 | 1.26e-137 | 393 |
MS.gene013399.t1 | MTR_7g072510 | 59.236 | 314 | 126 | 1 | 9 | 322 | 1 | 312 | 5.30e-136 | 388 |
MS.gene013399.t1 | MTR_3g466180 | 60.938 | 320 | 123 | 1 | 3 | 322 | 6 | 323 | 1.38e-132 | 380 |
MS.gene013399.t1 | MTR_3g072190 | 60.000 | 315 | 118 | 2 | 14 | 322 | 6 | 318 | 1.63e-132 | 380 |
MS.gene013399.t1 | MTR_4g083710 | 60.127 | 316 | 122 | 4 | 11 | 322 | 9 | 324 | 2.35e-131 | 377 |
MS.gene013399.t1 | MTR_7g072480 | 57.643 | 314 | 131 | 1 | 9 | 322 | 5 | 316 | 5.45e-130 | 373 |
MS.gene013399.t1 | MTR_5g074860 | 58.438 | 320 | 125 | 5 | 6 | 320 | 7 | 323 | 1.03e-126 | 365 |
MS.gene013399.t1 | MTR_1g115900 | 57.742 | 310 | 124 | 5 | 14 | 319 | 12 | 318 | 1.08e-124 | 360 |
MS.gene013399.t1 | MTR_4g074995 | 58.491 | 318 | 116 | 4 | 8 | 322 | 4 | 308 | 1.75e-124 | 359 |
MS.gene013399.t1 | MTR_4g029170 | 58.586 | 297 | 119 | 3 | 28 | 322 | 27 | 321 | 3.72e-123 | 356 |
MS.gene013399.t1 | MTR_4g074990 | 56.646 | 316 | 118 | 5 | 11 | 322 | 5 | 305 | 1.21e-120 | 349 |
MS.gene013399.t1 | MTR_4g029200 | 54.209 | 297 | 134 | 1 | 26 | 322 | 44 | 338 | 4.29e-120 | 349 |
MS.gene013399.t1 | MTR_4g029180 | 57.143 | 294 | 122 | 3 | 31 | 322 | 30 | 321 | 3.01e-118 | 343 |
MS.gene013399.t1 | MTR_7g093370 | 53.846 | 325 | 138 | 5 | 8 | 322 | 49 | 371 | 4.76e-118 | 345 |
MS.gene013399.t1 | MTR_7g026990 | 54.045 | 309 | 138 | 3 | 15 | 322 | 17 | 322 | 8.68e-118 | 342 |
MS.gene013399.t1 | MTR_5g074710 | 54.658 | 322 | 137 | 6 | 7 | 322 | 3 | 321 | 1.69e-117 | 342 |
MS.gene013399.t1 | MTR_5g074760 | 54.969 | 322 | 136 | 6 | 7 | 322 | 3 | 321 | 2.10e-117 | 342 |
MS.gene013399.t1 | MTR_5g074740 | 55.625 | 320 | 130 | 6 | 12 | 322 | 5 | 321 | 8.04e-117 | 340 |
MS.gene013399.t1 | MTR_4g029190 | 52.632 | 304 | 143 | 1 | 20 | 322 | 37 | 340 | 8.16e-117 | 341 |
MS.gene013399.t1 | MTR_3g467600 | 51.562 | 320 | 148 | 4 | 8 | 322 | 7 | 324 | 9.55e-113 | 330 |
MS.gene013399.t1 | MTR_1g054205 | 52.000 | 325 | 141 | 6 | 10 | 322 | 5 | 326 | 5.28e-110 | 323 |
MS.gene013399.t1 | MTR_5g021060 | 51.155 | 303 | 138 | 3 | 28 | 322 | 30 | 330 | 2.25e-108 | 319 |
MS.gene013399.t1 | MTR_4g125940 | 51.829 | 328 | 140 | 6 | 6 | 322 | 9 | 329 | 3.67e-108 | 318 |
MS.gene013399.t1 | MTR_3g072190 | 61.111 | 252 | 96 | 1 | 71 | 322 | 2 | 251 | 1.07e-107 | 314 |
MS.gene013399.t1 | MTR_4g074980 | 53.333 | 315 | 118 | 5 | 11 | 322 | 6 | 294 | 2.31e-107 | 315 |
MS.gene013399.t1 | MTR_5g017850 | 50.157 | 319 | 147 | 4 | 11 | 322 | 13 | 326 | 2.20e-105 | 311 |
MS.gene013399.t1 | MTR_8g076820 | 50.482 | 311 | 144 | 3 | 17 | 319 | 19 | 327 | 3.02e-105 | 311 |
MS.gene013399.t1 | MTR_5g017860 | 48.171 | 328 | 159 | 4 | 4 | 322 | 1 | 326 | 1.08e-103 | 307 |
MS.gene013399.t1 | MTR_4g122640 | 51.171 | 299 | 142 | 2 | 28 | 322 | 38 | 336 | 4.72e-103 | 305 |
MS.gene013399.t1 | MTR_2g040000 | 52.273 | 308 | 131 | 5 | 27 | 322 | 28 | 331 | 3.19e-101 | 301 |
MS.gene013399.t1 | MTR_4g074980 | 59.274 | 248 | 97 | 3 | 11 | 254 | 6 | 253 | 1.12e-100 | 296 |
MS.gene013399.t1 | MTR_2g029815 | 47.256 | 328 | 158 | 4 | 4 | 318 | 1 | 326 | 1.87e-99 | 297 |
MS.gene013399.t1 | MTR_2g029800 | 47.561 | 328 | 157 | 4 | 4 | 318 | 1 | 326 | 5.36e-99 | 296 |
MS.gene013399.t1 | MTR_5g014100 | 49.346 | 306 | 138 | 4 | 28 | 319 | 26 | 328 | 2.46e-98 | 293 |
MS.gene013399.t1 | MTR_2g029750 | 48.171 | 328 | 155 | 5 | 4 | 318 | 1 | 326 | 3.44e-98 | 294 |
MS.gene013399.t1 | MTR_1g022970 | 48.684 | 304 | 145 | 3 | 28 | 322 | 46 | 347 | 4.12e-98 | 293 |
MS.gene013399.t1 | MTR_2g029820 | 46.341 | 328 | 161 | 4 | 4 | 318 | 1 | 326 | 2.07e-97 | 292 |
MS.gene013399.t1 | MTR_5g074860 | 50.000 | 320 | 113 | 7 | 6 | 320 | 7 | 284 | 1.14e-96 | 287 |
MS.gene013399.t1 | MTR_2g029560 | 48.220 | 309 | 149 | 4 | 19 | 318 | 15 | 321 | 1.61e-96 | 289 |
MS.gene013399.t1 | MTR_4g125940 | 54.874 | 277 | 110 | 5 | 57 | 322 | 2 | 274 | 1.26e-95 | 284 |
MS.gene013399.t1 | MTR_2g029860 | 48.457 | 324 | 154 | 4 | 10 | 322 | 9 | 330 | 5.58e-95 | 285 |
MS.gene013399.t1 | MTR_2g029740 | 46.341 | 328 | 161 | 5 | 4 | 318 | 1 | 326 | 1.04e-94 | 285 |
MS.gene013399.t1 | MTR_2g029830 | 48.197 | 305 | 147 | 3 | 23 | 318 | 23 | 325 | 1.67e-94 | 284 |
MS.gene013399.t1 | MTR_2g028980 | 48.903 | 319 | 151 | 5 | 9 | 318 | 11 | 326 | 2.16e-93 | 281 |
MS.gene013399.t1 | MTR_4g030890 | 46.405 | 306 | 152 | 4 | 21 | 319 | 93 | 393 | 3.81e-93 | 283 |
MS.gene013399.t1 | MTR_4g031140 | 44.860 | 321 | 161 | 5 | 10 | 319 | 6 | 321 | 3.32e-92 | 278 |
MS.gene013399.t1 | MTR_2g029910 | 45.062 | 324 | 164 | 4 | 8 | 318 | 6 | 328 | 3.85e-92 | 278 |
MS.gene013399.t1 | MTR_5g049280 | 44.051 | 311 | 162 | 5 | 23 | 322 | 28 | 337 | 4.98e-92 | 277 |
MS.gene013399.t1 | MTR_2g029730 | 47.896 | 309 | 150 | 3 | 19 | 318 | 16 | 322 | 6.08e-92 | 278 |
MS.gene013399.t1 | MTR_2g029850 | 45.732 | 328 | 163 | 4 | 4 | 318 | 1 | 326 | 1.92e-89 | 271 |
MS.gene013399.t1 | MTR_0155s0040 | 43.218 | 317 | 172 | 5 | 7 | 322 | 6 | 315 | 3.13e-88 | 267 |
MS.gene013399.t1 | MTR_1g077000 | 42.121 | 330 | 175 | 6 | 2 | 322 | 5 | 327 | 9.06e-88 | 266 |
MS.gene013399.t1 | MTR_7g029030 | 43.887 | 319 | 172 | 4 | 8 | 322 | 5 | 320 | 1.29e-87 | 266 |
MS.gene013399.t1 | MTR_3g092990 | 40.615 | 325 | 182 | 4 | 4 | 319 | 1 | 323 | 2.50e-84 | 257 |
MS.gene013399.t1 | MTR_4g046713 | 41.587 | 315 | 173 | 4 | 12 | 318 | 11 | 322 | 4.07e-83 | 254 |
MS.gene013399.t1 | MTR_2g088770 | 41.772 | 316 | 171 | 6 | 12 | 318 | 10 | 321 | 2.16e-80 | 247 |
MS.gene013399.t1 | MTR_1g025980 | 42.320 | 319 | 170 | 6 | 7 | 318 | 3 | 314 | 2.53e-80 | 247 |
MS.gene013399.t1 | MTR_4g114210 | 43.119 | 327 | 164 | 8 | 11 | 322 | 1 | 320 | 4.42e-80 | 246 |
MS.gene013399.t1 | MTR_1g101830 | 41.066 | 319 | 169 | 8 | 15 | 322 | 12 | 322 | 2.06e-78 | 242 |
MS.gene013399.t1 | MTR_8g075100 | 41.860 | 301 | 156 | 7 | 28 | 319 | 26 | 316 | 1.74e-76 | 237 |
MS.gene013399.t1 | MTR_5g022870 | 40.308 | 325 | 170 | 8 | 9 | 322 | 5 | 316 | 1.79e-76 | 237 |
MS.gene013399.t1 | MTR_7g086820 | 40.404 | 297 | 173 | 3 | 24 | 319 | 16 | 309 | 3.40e-76 | 236 |
MS.gene013399.t1 | MTR_2g029830 | 48.031 | 254 | 121 | 3 | 74 | 318 | 6 | 257 | 1.14e-75 | 234 |
MS.gene013399.t1 | MTR_6g027440 | 39.365 | 315 | 184 | 5 | 11 | 322 | 4 | 314 | 2.24e-74 | 232 |
MS.gene013399.t1 | MTR_1g009750 | 39.812 | 319 | 177 | 6 | 11 | 318 | 10 | 324 | 8.67e-74 | 231 |
MS.gene013399.t1 | MTR_3g092990 | 38.769 | 325 | 177 | 5 | 4 | 319 | 1 | 312 | 1.35e-73 | 229 |
MS.gene013399.t1 | MTR_2g008710 | 40.000 | 325 | 172 | 7 | 10 | 318 | 4 | 321 | 2.69e-73 | 229 |
MS.gene013399.t1 | MTR_5g016010 | 39.275 | 331 | 182 | 7 | 1 | 318 | 1 | 325 | 3.81e-73 | 229 |
MS.gene013399.t1 | MTR_7g107520 | 39.936 | 313 | 175 | 5 | 13 | 318 | 10 | 316 | 1.29e-72 | 227 |
MS.gene013399.t1 | MTR_4g127670 | 41.558 | 308 | 161 | 7 | 27 | 322 | 23 | 323 | 5.94e-71 | 223 |
MS.gene013399.t1 | MTR_1g086320 | 37.888 | 322 | 188 | 3 | 9 | 318 | 8 | 329 | 1.09e-70 | 223 |
MS.gene013399.t1 | MTR_1g038680 | 41.077 | 297 | 164 | 4 | 32 | 318 | 33 | 328 | 3.74e-70 | 221 |
MS.gene013399.t1 | MTR_2g437770 | 40.134 | 299 | 160 | 6 | 28 | 318 | 50 | 337 | 7.04e-70 | 221 |
MS.gene013399.t1 | MTR_4g095450 | 39.506 | 324 | 186 | 6 | 1 | 318 | 1 | 320 | 1.60e-69 | 219 |
MS.gene013399.t1 | MTR_6g043460 | 37.425 | 334 | 191 | 6 | 1 | 322 | 1 | 328 | 5.90e-69 | 219 |
MS.gene013399.t1 | MTR_6g043280 | 38.509 | 322 | 179 | 7 | 9 | 318 | 14 | 328 | 1.09e-68 | 218 |
MS.gene013399.t1 | MTR_2g067440 | 36.556 | 331 | 167 | 7 | 28 | 320 | 60 | 385 | 1.11e-68 | 219 |
MS.gene013399.t1 | MTR_7g086870 | 37.543 | 293 | 176 | 4 | 28 | 319 | 22 | 308 | 5.46e-68 | 215 |
MS.gene013399.t1 | MTR_4g087965 | 39.604 | 303 | 171 | 5 | 27 | 318 | 41 | 342 | 6.72e-68 | 216 |
MS.gene013399.t1 | MTR_2g077990 | 36.667 | 330 | 171 | 6 | 28 | 320 | 76 | 404 | 9.54e-68 | 218 |
MS.gene013399.t1 | MTR_4g133800 | 38.591 | 298 | 165 | 5 | 29 | 318 | 42 | 329 | 4.93e-67 | 213 |
MS.gene013399.t1 | MTR_2g008160 | 39.677 | 310 | 168 | 8 | 21 | 318 | 17 | 319 | 6.24e-67 | 213 |
MS.gene013399.t1 | MTR_1g086490 | 36.970 | 330 | 187 | 5 | 9 | 318 | 8 | 336 | 8.30e-67 | 213 |
MS.gene013399.t1 | MTR_5g074700 | 51.111 | 225 | 92 | 6 | 101 | 322 | 5 | 214 | 1.02e-66 | 209 |
MS.gene013399.t1 | MTR_3g072210 | 57.219 | 187 | 76 | 3 | 138 | 322 | 54 | 238 | 1.54e-66 | 209 |
MS.gene013399.t1 | MTR_1g090760 | 36.335 | 322 | 189 | 7 | 15 | 322 | 11 | 330 | 3.02e-66 | 211 |
MS.gene013399.t1 | MTR_4g132490 | 34.154 | 325 | 208 | 2 | 3 | 322 | 4 | 327 | 3.72e-66 | 211 |
MS.gene013399.t1 | MTR_2g078610 | 35.736 | 333 | 170 | 8 | 28 | 320 | 76 | 404 | 2.43e-65 | 211 |
MS.gene013399.t1 | MTR_2g099175 | 36.688 | 308 | 176 | 6 | 27 | 322 | 35 | 335 | 4.28e-64 | 206 |
MS.gene013399.t1 | MTR_1g066710 | 35.294 | 306 | 182 | 5 | 26 | 322 | 25 | 323 | 4.58e-63 | 203 |
MS.gene013399.t1 | MTR_1g009750 | 36.909 | 317 | 172 | 7 | 11 | 318 | 10 | 307 | 2.98e-62 | 200 |
MS.gene013399.t1 | MTR_8g062780 | 35.737 | 319 | 190 | 6 | 9 | 318 | 8 | 320 | 7.95e-62 | 200 |
MS.gene013399.t1 | MTR_2g078280 | 35.849 | 318 | 166 | 6 | 28 | 308 | 76 | 392 | 1.02e-61 | 201 |
MS.gene013399.t1 | MTR_0286s0010 | 35.185 | 324 | 189 | 6 | 14 | 322 | 17 | 334 | 4.63e-61 | 198 |
MS.gene013399.t1 | MTR_6g008075 | 35.185 | 324 | 189 | 6 | 14 | 322 | 17 | 334 | 4.63e-61 | 198 |
MS.gene013399.t1 | MTR_1g066380 | 34.426 | 305 | 186 | 4 | 26 | 322 | 25 | 323 | 1.18e-60 | 197 |
MS.gene013399.t1 | MTR_6g043240 | 35.000 | 320 | 188 | 7 | 11 | 318 | 16 | 327 | 3.54e-60 | 196 |
MS.gene013399.t1 | MTR_1g066640 | 35.082 | 305 | 184 | 4 | 26 | 322 | 25 | 323 | 3.63e-60 | 195 |
MS.gene013399.t1 | MTR_2g008730 | 36.923 | 325 | 158 | 7 | 10 | 318 | 4 | 297 | 7.98e-60 | 194 |
MS.gene013399.t1 | MTR_3g105790 | 35.583 | 326 | 191 | 4 | 10 | 322 | 3 | 322 | 1.07e-59 | 194 |
MS.gene013399.t1 | MTR_1g066680 | 34.343 | 297 | 190 | 4 | 26 | 319 | 25 | 319 | 1.10e-59 | 194 |
MS.gene013399.t1 | MTR_7g072490 | 44.628 | 242 | 78 | 2 | 74 | 315 | 2 | 187 | 4.61e-59 | 189 |
MS.gene013399.t1 | MTR_4g132110 | 32.248 | 307 | 204 | 3 | 15 | 318 | 19 | 324 | 1.26e-57 | 189 |
MS.gene013399.t1 | MTR_4g132110 | 31.731 | 312 | 204 | 4 | 15 | 318 | 19 | 329 | 2.57e-55 | 183 |
MS.gene013399.t1 | MTR_2g008160 | 36.842 | 304 | 150 | 8 | 21 | 318 | 17 | 284 | 5.62e-55 | 181 |
MS.gene013399.t1 | MTR_0147s0010 | 32.710 | 321 | 177 | 5 | 25 | 320 | 74 | 380 | 6.88e-55 | 183 |
MS.gene013399.t1 | MTR_5g033470 | 35.987 | 314 | 185 | 7 | 22 | 322 | 67 | 377 | 5.89e-54 | 181 |
MS.gene013399.t1 | MTR_2g067450 | 34.628 | 309 | 175 | 9 | 28 | 320 | 11 | 308 | 8.88e-51 | 171 |
MS.gene013399.t1 | MTR_1g066380 | 33.977 | 259 | 157 | 4 | 72 | 322 | 3 | 255 | 5.43e-47 | 159 |
MS.gene013399.t1 | MTR_3g072260 | 61.719 | 128 | 43 | 2 | 14 | 135 | 6 | 133 | 3.94e-46 | 153 |
MS.gene013399.t1 | MTR_2g008160 | 44.068 | 177 | 95 | 3 | 21 | 197 | 17 | 189 | 4.45e-44 | 150 |
MS.gene013399.t1 | MTR_3g105790 | 36.100 | 241 | 143 | 2 | 91 | 322 | 8 | 246 | 1.97e-40 | 142 |
MS.gene013399.t1 | MTR_2g029880 | 42.553 | 188 | 87 | 4 | 140 | 318 | 9 | 184 | 3.45e-39 | 137 |
MS.gene013399.t1 | MTR_2g077980 | 28.772 | 285 | 156 | 9 | 80 | 320 | 1 | 282 | 1.03e-27 | 109 |
MS.gene013399.t1 | MTR_5g074770 | 53.933 | 89 | 38 | 2 | 234 | 320 | 20 | 107 | 4.79e-27 | 102 |
MS.gene013399.t1 | MTR_2g078560 | 30.180 | 222 | 119 | 5 | 133 | 318 | 95 | 316 | 2.93e-26 | 106 |
MS.gene013399.t1 | MTR_7g086790 | 44.167 | 120 | 63 | 3 | 75 | 194 | 17 | 132 | 2.68e-24 | 98.2 |
MS.gene013399.t1 | MTR_3g462850 | 37.324 | 142 | 77 | 5 | 192 | 322 | 9 | 149 | 5.32e-23 | 93.2 |
MS.gene013399.t1 | MTR_4g031040 | 36.842 | 171 | 69 | 4 | 89 | 259 | 3 | 134 | 9.73e-23 | 92.4 |
MS.gene013399.t1 | MTR_5g058120 | 35.000 | 160 | 94 | 3 | 164 | 321 | 7 | 158 | 1.10e-22 | 95.5 |
MS.gene013399.t1 | MTR_4g114220 | 39.130 | 138 | 60 | 4 | 40 | 169 | 15 | 136 | 1.53e-21 | 89.4 |
MS.gene013399.t1 | MTR_1g089005 | 40.909 | 132 | 71 | 2 | 14 | 139 | 1 | 131 | 3.02e-21 | 89.0 |
MS.gene013399.t1 | MTR_6g048160 | 54.167 | 72 | 29 | 2 | 67 | 138 | 22 | 89 | 9.63e-19 | 80.1 |
MS.gene013399.t1 | MTR_1g098320 | 46.053 | 76 | 41 | 0 | 243 | 318 | 45 | 120 | 2.66e-18 | 80.5 |
MS.gene013399.t1 | MTR_3g107060 | 27.626 | 257 | 119 | 9 | 60 | 301 | 106 | 310 | 6.17e-18 | 83.2 |
MS.gene013399.t1 | MTR_2g029930 | 35.345 | 116 | 43 | 4 | 14 | 111 | 1 | 102 | 4.26e-15 | 70.5 |
MS.gene013399.t1 | MTR_7g086810 | 31.967 | 122 | 57 | 1 | 24 | 145 | 2 | 97 | 6.10e-15 | 73.6 |
MS.gene013399.t1 | MTR_4g073410 | 24.506 | 253 | 137 | 8 | 62 | 304 | 35 | 243 | 1.46e-14 | 73.2 |
MS.gene013399.t1 | MTR_5g022510 | 24.542 | 273 | 151 | 9 | 42 | 304 | 15 | 242 | 3.04e-14 | 72.0 |
MS.gene013399.t1 | MTR_7g086785 | 29.787 | 141 | 93 | 2 | 74 | 214 | 4 | 138 | 1.56e-13 | 67.4 |
MS.gene013399.t1 | MTR_7g107500 | 42.500 | 80 | 45 | 1 | 239 | 318 | 15 | 93 | 2.31e-13 | 65.5 |
MS.gene013399.t1 | MTR_4g012865 | 39.437 | 71 | 43 | 0 | 25 | 95 | 74 | 144 | 1.40e-12 | 65.1 |
MS.gene013399.t1 | MTR_0147s0040 | 37.662 | 77 | 48 | 0 | 244 | 320 | 5 | 81 | 3.68e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013399.t1 | AT5G05340 | 76.431 | 297 | 70 | 0 | 26 | 322 | 28 | 324 | 1.04e-170 | 477 |
MS.gene013399.t1 | AT5G58400 | 64.309 | 311 | 109 | 2 | 14 | 322 | 15 | 325 | 4.16e-147 | 417 |
MS.gene013399.t1 | AT5G58390 | 59.365 | 315 | 127 | 1 | 9 | 322 | 2 | 316 | 6.96e-136 | 388 |
MS.gene013399.t1 | AT1G14550 | 56.869 | 313 | 127 | 6 | 9 | 318 | 10 | 317 | 1.94e-121 | 352 |
MS.gene013399.t1 | AT5G06720 | 53.823 | 327 | 139 | 5 | 6 | 322 | 9 | 333 | 3.30e-119 | 347 |
MS.gene013399.t1 | AT1G14540 | 54.341 | 311 | 138 | 3 | 14 | 322 | 7 | 315 | 2.93e-118 | 343 |
MS.gene013399.t1 | AT5G06730 | 51.070 | 327 | 148 | 4 | 6 | 322 | 10 | 334 | 3.96e-115 | 337 |
MS.gene013399.t1 | AT4G36430 | 50.157 | 319 | 149 | 3 | 12 | 322 | 14 | 330 | 5.80e-111 | 325 |
MS.gene013399.t1 | AT3G50990 | 50.606 | 330 | 145 | 5 | 9 | 322 | 14 | 341 | 3.38e-108 | 319 |
MS.gene013399.t1 | AT2G18150 | 49.838 | 309 | 145 | 3 | 22 | 322 | 30 | 336 | 1.06e-107 | 317 |
MS.gene013399.t1 | AT2G18140 | 50.000 | 310 | 145 | 3 | 21 | 322 | 28 | 335 | 1.44e-107 | 317 |
MS.gene013399.t1 | AT5G66390 | 48.148 | 324 | 156 | 4 | 9 | 322 | 12 | 333 | 3.35e-106 | 313 |
MS.gene013399.t1 | AT1G44970 | 51.133 | 309 | 140 | 3 | 20 | 319 | 37 | 343 | 3.41e-103 | 306 |
MS.gene013399.t1 | AT1G49570 | 50.495 | 303 | 140 | 3 | 28 | 321 | 48 | 349 | 2.93e-102 | 304 |
MS.gene013399.t1 | AT5G19890 | 48.765 | 324 | 147 | 6 | 10 | 322 | 12 | 327 | 1.43e-99 | 296 |
MS.gene013399.t1 | AT4G16270 | 50.164 | 305 | 136 | 6 | 28 | 322 | 50 | 348 | 3.63e-97 | 291 |
MS.gene013399.t1 | AT2G35380 | 46.605 | 324 | 157 | 5 | 14 | 322 | 13 | 335 | 7.75e-97 | 290 |
MS.gene013399.t1 | AT5G19880 | 47.385 | 325 | 155 | 6 | 12 | 322 | 7 | 329 | 3.03e-96 | 288 |
MS.gene013399.t1 | AT4G08780 | 47.419 | 310 | 150 | 4 | 24 | 322 | 20 | 327 | 5.50e-96 | 288 |
MS.gene013399.t1 | AT4G08770 | 47.742 | 310 | 149 | 4 | 21 | 319 | 17 | 324 | 1.74e-95 | 286 |
MS.gene013399.t1 | AT2G38390 | 45.317 | 331 | 169 | 5 | 2 | 322 | 5 | 333 | 2.71e-94 | 284 |
MS.gene013399.t1 | AT1G68850 | 43.421 | 304 | 159 | 4 | 28 | 319 | 30 | 332 | 5.63e-94 | 282 |
MS.gene013399.t1 | AT3G32980 | 45.988 | 324 | 162 | 4 | 10 | 322 | 13 | 334 | 9.44e-94 | 282 |
MS.gene013399.t1 | AT2G38380 | 45.152 | 330 | 169 | 5 | 3 | 322 | 6 | 333 | 2.96e-93 | 281 |
MS.gene013399.t1 | AT3G49120 | 45.820 | 323 | 162 | 4 | 11 | 322 | 15 | 335 | 2.10e-91 | 276 |
MS.gene013399.t1 | AT3G49110 | 45.201 | 323 | 164 | 4 | 11 | 322 | 16 | 336 | 5.95e-91 | 275 |
MS.gene013399.t1 | AT2G22420 | 43.344 | 323 | 171 | 4 | 7 | 322 | 2 | 319 | 2.14e-90 | 273 |
MS.gene013399.t1 | AT3G01190 | 41.538 | 325 | 174 | 7 | 7 | 322 | 4 | 321 | 1.72e-82 | 253 |
MS.gene013399.t1 | AT5G42180 | 42.188 | 320 | 166 | 7 | 11 | 320 | 5 | 315 | 2.34e-81 | 249 |
MS.gene013399.t1 | AT5G15180 | 39.941 | 338 | 178 | 8 | 1 | 322 | 1 | 329 | 1.32e-80 | 248 |
MS.gene013399.t1 | AT2G41480 | 41.945 | 329 | 170 | 9 | 8 | 322 | 7 | 328 | 1.59e-79 | 245 |
MS.gene013399.t1 | AT4G33420 | 41.693 | 319 | 175 | 8 | 8 | 322 | 14 | 325 | 6.89e-79 | 243 |
MS.gene013399.t1 | AT4G33420 | 41.693 | 319 | 175 | 8 | 8 | 322 | 61 | 372 | 2.89e-78 | 243 |
MS.gene013399.t1 | AT1G05260 | 39.759 | 332 | 180 | 8 | 4 | 322 | 1 | 325 | 8.48e-78 | 241 |
MS.gene013399.t1 | AT5G17820 | 39.748 | 317 | 172 | 5 | 13 | 322 | 9 | 313 | 1.20e-77 | 240 |
MS.gene013399.t1 | AT5G17820 | 39.748 | 317 | 172 | 5 | 13 | 322 | 62 | 366 | 1.03e-76 | 239 |
MS.gene013399.t1 | AT1G05240 | 40.328 | 305 | 167 | 5 | 28 | 322 | 26 | 325 | 1.17e-76 | 238 |
MS.gene013399.t1 | AT1G05250 | 40.328 | 305 | 167 | 5 | 28 | 322 | 26 | 325 | 1.17e-76 | 238 |
MS.gene013399.t1 | AT5G14130 | 39.062 | 320 | 178 | 6 | 9 | 318 | 14 | 326 | 2.00e-76 | 237 |
MS.gene013399.t1 | AT5G64120 | 42.282 | 298 | 157 | 6 | 32 | 322 | 39 | 328 | 2.01e-76 | 237 |
MS.gene013399.t1 | AT5G14130 | 39.062 | 320 | 178 | 6 | 9 | 318 | 55 | 367 | 3.66e-76 | 238 |
MS.gene013399.t1 | AT5G51890 | 38.629 | 321 | 184 | 6 | 7 | 319 | 4 | 319 | 6.51e-75 | 233 |
MS.gene013399.t1 | AT3G03670 | 39.937 | 318 | 177 | 5 | 14 | 322 | 9 | 321 | 2.78e-74 | 231 |
MS.gene013399.t1 | AT4G11290 | 38.889 | 324 | 183 | 7 | 7 | 318 | 2 | 322 | 1.07e-73 | 230 |
MS.gene013399.t1 | AT2G35380 | 48.980 | 245 | 112 | 4 | 90 | 322 | 4 | 247 | 4.67e-73 | 226 |
MS.gene013399.t1 | AT1G77100 | 42.462 | 325 | 168 | 10 | 11 | 322 | 1 | 319 | 1.58e-72 | 227 |
MS.gene013399.t1 | AT3G21770 | 38.710 | 310 | 173 | 6 | 20 | 318 | 21 | 324 | 2.55e-72 | 227 |
MS.gene013399.t1 | AT4G37530 | 40.777 | 309 | 169 | 6 | 21 | 318 | 20 | 325 | 5.38e-72 | 226 |
MS.gene013399.t1 | AT2G18980 | 38.602 | 329 | 183 | 7 | 5 | 322 | 3 | 323 | 7.73e-72 | 225 |
MS.gene013399.t1 | AT4G37520 | 40.461 | 304 | 167 | 6 | 26 | 318 | 25 | 325 | 3.30e-71 | 224 |
MS.gene013399.t1 | AT4G30170 | 40.584 | 308 | 165 | 6 | 26 | 322 | 25 | 325 | 3.80e-71 | 224 |
MS.gene013399.t1 | AT1G71695 | 40.134 | 299 | 172 | 4 | 28 | 322 | 44 | 339 | 5.41e-71 | 224 |
MS.gene013399.t1 | AT5G67400 | 38.838 | 327 | 182 | 6 | 7 | 318 | 2 | 325 | 8.09e-71 | 223 |
MS.gene013399.t1 | AT5G40150 | 39.333 | 300 | 176 | 4 | 23 | 318 | 27 | 324 | 9.44e-71 | 223 |
MS.gene013399.t1 | AT4G26010 | 39.414 | 307 | 177 | 5 | 14 | 319 | 8 | 306 | 1.26e-70 | 222 |
MS.gene013399.t1 | AT4G26010 | 39.414 | 307 | 177 | 5 | 14 | 319 | 36 | 334 | 1.77e-70 | 222 |
MS.gene013399.t1 | AT4G33870 | 34.125 | 337 | 179 | 4 | 25 | 320 | 65 | 399 | 2.32e-70 | 224 |
MS.gene013399.t1 | AT4G37520 | 40.132 | 304 | 165 | 7 | 26 | 318 | 25 | 322 | 2.50e-69 | 219 |
MS.gene013399.t1 | AT3G49960 | 37.920 | 327 | 185 | 6 | 7 | 318 | 2 | 325 | 3.11e-69 | 219 |
MS.gene013399.t1 | AT5G47000 | 37.500 | 328 | 193 | 5 | 1 | 318 | 1 | 326 | 3.19e-69 | 219 |
MS.gene013399.t1 | AT3G28200 | 37.458 | 299 | 182 | 4 | 23 | 318 | 16 | 312 | 3.88e-68 | 216 |
MS.gene013399.t1 | AT5G39580 | 39.628 | 323 | 174 | 9 | 9 | 322 | 9 | 319 | 8.81e-68 | 215 |
MS.gene013399.t1 | AT4G17690 | 38.079 | 302 | 183 | 3 | 20 | 318 | 18 | 318 | 4.03e-67 | 213 |
MS.gene013399.t1 | AT4G31760 | 36.890 | 328 | 190 | 4 | 4 | 322 | 7 | 326 | 7.86e-67 | 213 |
MS.gene013399.t1 | AT1G30870 | 38.361 | 305 | 168 | 6 | 28 | 322 | 51 | 345 | 1.06e-66 | 213 |
MS.gene013399.t1 | AT2G34060 | 39.869 | 306 | 172 | 5 | 25 | 319 | 39 | 343 | 1.69e-66 | 213 |
MS.gene013399.t1 | AT1G34510 | 37.419 | 310 | 185 | 6 | 14 | 322 | 8 | 309 | 4.45e-66 | 210 |
MS.gene013399.t1 | AT4G25980 | 36.875 | 320 | 182 | 8 | 12 | 318 | 10 | 322 | 7.89e-66 | 210 |
MS.gene013399.t1 | AT1G24110 | 35.737 | 319 | 193 | 5 | 14 | 322 | 6 | 322 | 1.99e-65 | 209 |
MS.gene013399.t1 | AT2G24800 | 37.908 | 306 | 176 | 3 | 26 | 322 | 29 | 329 | 2.66e-65 | 209 |
MS.gene013399.t1 | AT2G39040 | 38.978 | 313 | 177 | 7 | 22 | 322 | 40 | 350 | 1.56e-63 | 205 |
MS.gene013399.t1 | AT5G64100 | 36.061 | 330 | 179 | 7 | 11 | 318 | 8 | 327 | 9.36e-61 | 197 |
MS.gene013399.t1 | AT4G21960 | 33.555 | 301 | 196 | 3 | 21 | 318 | 24 | 323 | 2.45e-60 | 196 |
MS.gene013399.t1 | AT4G37530 | 41.221 | 262 | 140 | 5 | 21 | 271 | 20 | 278 | 2.82e-60 | 194 |
MS.gene013399.t1 | AT5G64110 | 39.799 | 299 | 162 | 6 | 30 | 318 | 36 | 326 | 1.80e-59 | 194 |
MS.gene013399.t1 | AT2G37130 | 32.899 | 307 | 201 | 4 | 20 | 322 | 22 | 327 | 5.38e-57 | 187 |
MS.gene013399.t1 | AT2G43480 | 33.648 | 318 | 189 | 7 | 19 | 322 | 26 | 335 | 2.83e-56 | 186 |
MS.gene013399.t1 | AT2G37130 | 33.108 | 296 | 193 | 4 | 31 | 322 | 2 | 296 | 1.75e-55 | 182 |
MS.gene013399.t1 | AT5G24070 | 33.762 | 311 | 184 | 7 | 26 | 322 | 33 | 335 | 3.40e-55 | 183 |
MS.gene013399.t1 | AT5G22410 | 34.242 | 330 | 195 | 11 | 3 | 319 | 2 | 322 | 5.46e-52 | 174 |
MS.gene013399.t1 | AT3G17070 | 32.895 | 304 | 195 | 4 | 25 | 320 | 35 | 337 | 2.43e-51 | 173 |
MS.gene013399.t1 | AT5G39580 | 37.931 | 232 | 132 | 5 | 9 | 240 | 9 | 228 | 1.65e-45 | 155 |
MS.gene013399.t1 | AT4G25980 | 40.217 | 184 | 106 | 3 | 12 | 195 | 55 | 234 | 1.34e-41 | 146 |
MS.gene013399.t1 | AT2G24800 | 43.452 | 168 | 91 | 1 | 26 | 193 | 29 | 192 | 9.79e-40 | 140 |
MS.gene013399.t1 | AT3G17070 | 32.046 | 259 | 166 | 5 | 70 | 320 | 18 | 274 | 1.00e-37 | 135 |
MS.gene013399.t1 | AT3G42570 | 37.634 | 93 | 57 | 1 | 104 | 195 | 57 | 149 | 2.17e-15 | 72.8 |
MS.gene013399.t1 | AT4G35970 | 25.591 | 254 | 132 | 9 | 62 | 304 | 33 | 240 | 3.36e-14 | 72.0 |
MS.gene013399.t1 | AT4G35970 | 26.923 | 234 | 114 | 9 | 62 | 284 | 33 | 220 | 5.14e-13 | 67.8 |
Find 79 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCTATTTGTCCTCATAAT+AGG | 0.171617 | 3.4:+86100331 | MS.gene013399:CDS |
TCCCCTGACCCTACCGTGTT+TGG | 0.267936 | 3.4:-86101460 | None:intergenic |
TTCAACAGTGGAAGAGAGTT+TGG | 0.286032 | 3.4:-86100401 | None:intergenic |
GATGACACATCAAACTTTAC+TGG | 0.290470 | 3.4:+86100747 | MS.gene013399:CDS |
CATTCTGGCCTCGTTTGATA+TGG | 0.290982 | 3.4:-86100440 | None:intergenic |
CCACGAGCAGAGTTTCTATT+CGG | 0.318939 | 3.4:-86100786 | None:intergenic |
AGGACCATTAACTCTTAGTT+AGG | 0.328701 | 3.4:-86101739 | None:intergenic |
ACATTGAGGTGAGTGTATTA+AGG | 0.335570 | 3.4:-86101157 | None:intergenic |
TTCTATTTGTCCTCATAATA+GGG | 0.335750 | 3.4:+86100332 | MS.gene013399:CDS |
GAGGATGGAAGCACCCATTC+TGG | 0.361253 | 3.4:-86100455 | None:intergenic |
CCCCTGACCCTACCGTGTTT+GGG | 0.371616 | 3.4:-86101459 | None:intergenic |
TAGATTAACCATGATCAGTT+TGG | 0.380143 | 3.4:+86100309 | MS.gene013399:CDS |
TGACTAGGTGCGCACACAAT+TGG | 0.387097 | 3.4:+86101349 | MS.gene013399:intron |
TGCCCAAACACGGTAGGGTC+AGG | 0.389460 | 3.4:+86101457 | MS.gene013399:CDS |
AAGCAAGGTGCACAACCTTT+AGG | 0.406716 | 3.4:+86101374 | MS.gene013399:CDS |
AAGGACTTGGTCACATTGTC+AGG | 0.407167 | 3.4:+86101203 | MS.gene013399:CDS |
CACGAGCAGAGTTTCTATTC+GGG | 0.419229 | 3.4:-86100785 | None:intergenic |
AGGGTCAGGGGACAACAATT+TGG | 0.431667 | 3.4:+86101471 | MS.gene013399:CDS |
TGGTCTTTCTAGCAAGGACT+TGG | 0.435885 | 3.4:+86101190 | MS.gene013399:CDS |
AGTGTATTAAGGTTTGAAGT+TGG | 0.441285 | 3.4:-86101146 | None:intergenic |
ACCTCAATGTTTAGTGCTGT+TGG | 0.451105 | 3.4:+86101170 | MS.gene013399:CDS |
TCAACAGTGGAAGAGAGTTT+GGG | 0.456236 | 3.4:-86100400 | None:intergenic |
TGCTGTTGGTCTTTCTAGCA+AGG | 0.464803 | 3.4:+86101184 | MS.gene013399:CDS |
CGTCACTGCTATGATAAAGA+TGG | 0.465008 | 3.4:+86101660 | MS.gene013399:CDS |
CATATCAAACGAGGCCAGAA+TGG | 0.468938 | 3.4:+86100441 | MS.gene013399:CDS |
TAAGGTTTGAAGTTGGTGTC+GGG | 0.472983 | 3.4:-86101139 | None:intergenic |
AGTACTGTAGCCACTCACTA+TGG | 0.474377 | 3.4:-86101611 | None:intergenic |
CATTGGCACTCCCTATTATG+AGG | 0.477774 | 3.4:-86100342 | None:intergenic |
CAGGATCAAATGGAGAGATC+AGG | 0.478815 | 3.4:+86101701 | MS.gene013399:CDS |
TGTTGAATCCACAGTGCAAT+CGG | 0.483225 | 3.4:+86100417 | MS.gene013399:CDS |
TAATTTGCATGATAGCTTGG+TGG | 0.486043 | 3.4:+86101044 | MS.gene013399:intron |
AAATAGAACCAAACTGATCA+TGG | 0.488287 | 3.4:-86100317 | None:intergenic |
AGTCCTCTCACAGGATCAAA+TGG | 0.488459 | 3.4:+86101691 | MS.gene013399:CDS |
GATAGCTTGGTGGCCCAACC+TGG | 0.492782 | 3.4:+86101054 | MS.gene013399:intron |
GTTTGTAGAAAGTTGTGCAT+TGG | 0.497733 | 3.4:-86100359 | None:intergenic |
CAAGAACCTTGTTCAAAACA+AGG | 0.498516 | 3.4:+86101540 | MS.gene013399:CDS |
AGCAGATTGACTAGCCGTCT+TGG | 0.506189 | 3.4:-86101102 | None:intergenic |
AACGGAGTCTGCGGCAGCGA+TGG | 0.508742 | 3.4:-86100886 | None:intergenic |
GTTGTAGATTCGTGTCCTAA+AGG | 0.511429 | 3.4:-86101389 | None:intergenic |
AGCAAATGAAGTATCTATGT+TGG | 0.515266 | 3.4:-86101416 | None:intergenic |
TTAAGGTTTGAAGTTGGTGT+CGG | 0.519708 | 3.4:-86101140 | None:intergenic |
ATATCAAACGAGGCCAGAAT+GGG | 0.522633 | 3.4:+86100442 | MS.gene013399:CDS |
CCAACCTGGAACGTAAAACT+TGG | 0.525815 | 3.4:+86101068 | MS.gene013399:CDS |
GCCACTCACTATGGAGTTGG+TGG | 0.526661 | 3.4:-86101602 | None:intergenic |
GTAGTTGTTGTCAAAAGAAG+TGG | 0.535285 | 3.4:-86101515 | None:intergenic |
TCAGCACATGATACAACGCC+AGG | 0.549232 | 3.4:-86100855 | None:intergenic |
GCCCAAACACGGTAGGGTCA+GGG | 0.551388 | 3.4:+86101458 | MS.gene013399:CDS |
GCCGTAGAGAATGTATGTCC+TGG | 0.552010 | 3.4:+86100837 | MS.gene013399:CDS |
TTGCAATTATAGGGATGTGA+TGG | 0.558828 | 3.4:+86100711 | MS.gene013399:intron |
CAAATTGCCCAAACACGGTA+GGG | 0.561586 | 3.4:+86101452 | MS.gene013399:CDS |
GTCACTGCTATGATAAAGAT+GGG | 0.562575 | 3.4:+86101661 | MS.gene013399:CDS |
AGTCTGCGGCAGCGATGGCA+AGG | 0.565639 | 3.4:-86100881 | None:intergenic |
GTGGAAGAACAAGCGGAGGA+TGG | 0.566967 | 3.4:-86100470 | None:intergenic |
TCAAATTGCCCAAACACGGT+AGG | 0.579240 | 3.4:+86101451 | MS.gene013399:CDS |
CCGAATAGAAACTCTGCTCG+TGG | 0.583680 | 3.4:+86100786 | MS.gene013399:CDS |
GTGGGAGTCTGAAGATCAAG+AGG | 0.583868 | 3.4:-86101496 | None:intergenic |
AAGAACCTTGTTCAAAACAA+GGG | 0.585836 | 3.4:+86101541 | MS.gene013399:CDS |
TAGTTGTTGTCAAAAGAAGT+GGG | 0.588511 | 3.4:-86101514 | None:intergenic |
GCCAGGACATACATTCTCTA+CGG | 0.589807 | 3.4:-86100838 | None:intergenic |
CCCAAACACGGTAGGGTCAG+GGG | 0.592520 | 3.4:+86101459 | MS.gene013399:CDS |
TGAAGTTGGTGTCGGGATCG+CGG | 0.598618 | 3.4:-86101132 | None:intergenic |
GACTACACTTACAATTGCAA+CGG | 0.601677 | 3.4:-86100904 | None:intergenic |
GGTGATATTAGTCCTCTCAC+AGG | 0.606148 | 3.4:+86101682 | MS.gene013399:CDS |
GTAGCCACTCACTATGGAGT+TGG | 0.614655 | 3.4:-86101605 | None:intergenic |
TCTCCATTTGATCCTGTGAG+AGG | 0.617319 | 3.4:-86101694 | None:intergenic |
TACAATTGCAACGGAGTCTG+CGG | 0.621872 | 3.4:-86100895 | None:intergenic |
AGCAATCGTGGAAGAACAAG+CGG | 0.622282 | 3.4:-86100477 | None:intergenic |
CGCACACAATTGGACAAGCA+AGG | 0.634921 | 3.4:+86101359 | MS.gene013399:CDS |
ACCAACAGCACTAAACATTG+AGG | 0.638042 | 3.4:-86101171 | None:intergenic |
ACAATCAAATTGCCCAAACA+CGG | 0.642398 | 3.4:+86101447 | MS.gene013399:CDS |
CATAGCAGTGACGAAATCTG+AGG | 0.651727 | 3.4:-86101650 | None:intergenic |
TCCACCAACTCCATAGTGAG+TGG | 0.659928 | 3.4:+86101601 | MS.gene013399:CDS |
TGCAATTATAGGGATGTGAT+GGG | 0.661471 | 3.4:+86100712 | MS.gene013399:intron |
TTACATTGACAAAGCAATCG+TGG | 0.667907 | 3.4:-86100489 | None:intergenic |
TGGAAGAAGAGACGCCAAGA+CGG | 0.677274 | 3.4:+86101088 | MS.gene013399:CDS |
TTGCACTGTGGATTCAACAG+TGG | 0.709638 | 3.4:-86100413 | None:intergenic |
GCAATCGGCCATATCAAACG+AGG | 0.717823 | 3.4:+86100432 | MS.gene013399:CDS |
AATCGTGGAAGAACAAGCGG+AGG | 0.718893 | 3.4:-86100474 | None:intergenic |
TGATATGGCCGATTGCACTG+TGG | 0.749810 | 3.4:-86100425 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATATAATTTCTCATTT+GGG | + | chr3.4:86101281-86101300 | MS.gene013399:intron | 10.0% |
!! | CAAATATATAATTTCTCATT+TGG | + | chr3.4:86101280-86101299 | MS.gene013399:intron | 15.0% |
!! | TGTTATAAATGAAATTAATG+AGG | - | chr3.4:86100526-86100545 | None:intergenic | 15.0% |
!!! | AAGTGTTTTTAAAATGTATA+TGG | - | chr3.4:86100549-86100568 | None:intergenic | 15.0% |
! | AAATATAAGCAAAACAGCAT+AGG | - | chr3.4:86101256-86101275 | None:intergenic | 25.0% |
! | GGTATCTTAATTAATTGACT+AGG | + | chr3.4:86101334-86101353 | MS.gene013399:intron | 25.0% |
! | TTCTATTTGTCCTCATAATA+GGG | + | chr3.4:86100332-86100351 | MS.gene013399:CDS | 25.0% |
!!! | TCACTTAATTTACTTTTGCA+TGG | - | chr3.4:86100990-86101009 | None:intergenic | 25.0% |
!!! | TTTTAATTTGCATGATAGCT+TGG | + | chr3.4:86101041-86101060 | MS.gene013399:intron | 25.0% |
AAATAGAACCAAACTGATCA+TGG | - | chr3.4:86100320-86100339 | None:intergenic | 30.0% | |
AAGAACCTTGTTCAAAACAA+GGG | + | chr3.4:86101541-86101560 | MS.gene013399:CDS | 30.0% | |
GTTCTATTTGTCCTCATAAT+AGG | + | chr3.4:86100331-86100350 | MS.gene013399:CDS | 30.0% | |
GTTTACTCATTGTGCTTATA+AGG | - | chr3.4:86100676-86100695 | None:intergenic | 30.0% | |
TAGATTAACCATGATCAGTT+TGG | + | chr3.4:86100309-86100328 | MS.gene013399:CDS | 30.0% | |
TAGTTGTTGTCAAAAGAAGT+GGG | - | chr3.4:86101517-86101536 | None:intergenic | 30.0% | |
TTAAATCTTCTCGAAGACAA+TGG | - | chr3.4:86100604-86100623 | None:intergenic | 30.0% | |
! | AGCAAATGAAGTATCTATGT+TGG | - | chr3.4:86101419-86101438 | None:intergenic | 30.0% |
! | AGTGTATTAAGGTTTGAAGT+TGG | - | chr3.4:86101149-86101168 | None:intergenic | 30.0% |
! | TCAGACCAACAACTTTTTAA+CGG | + | chr3.4:86101574-86101593 | MS.gene013399:CDS | 30.0% |
! | TTATGCTGCTTGCAATTATA+GGG | + | chr3.4:86100702-86100721 | MS.gene013399:intron | 30.0% |
! | TTTATGCTGCTTGCAATTAT+AGG | + | chr3.4:86100701-86100720 | MS.gene013399:intron | 30.0% |
AAATCTGAGGAAAAAGAGCT+TGG | - | chr3.4:86101640-86101659 | None:intergenic | 35.0% | |
ACAATCAAATTGCCCAAACA+CGG | + | chr3.4:86101447-86101466 | MS.gene013399:CDS | 35.0% | |
ACATTGAGGTGAGTGTATTA+AGG | - | chr3.4:86101160-86101179 | None:intergenic | 35.0% | |
CAAGAACCTTGTTCAAAACA+AGG | + | chr3.4:86101540-86101559 | MS.gene013399:CDS | 35.0% | |
CAGGTACAATTGCAATGATT+TGG | + | chr3.4:86101222-86101241 | MS.gene013399:intron | 35.0% | |
GAAATTAATGAGGCATGAGA+AGG | - | chr3.4:86100516-86100535 | None:intergenic | 35.0% | |
GACTACACTTACAATTGCAA+CGG | - | chr3.4:86100907-86100926 | None:intergenic | 35.0% | |
GATGACACATCAAACTTTAC+TGG | + | chr3.4:86100747-86100766 | MS.gene013399:CDS | 35.0% | |
GTAGTTGTTGTCAAAAGAAG+TGG | - | chr3.4:86101518-86101537 | None:intergenic | 35.0% | |
GTCACTGCTATGATAAAGAT+GGG | + | chr3.4:86101661-86101680 | MS.gene013399:CDS | 35.0% | |
GTTTGTAGAAAGTTGTGCAT+TGG | - | chr3.4:86100362-86100381 | None:intergenic | 35.0% | |
TGCAATTATAGGGATGTGAT+GGG | + | chr3.4:86100712-86100731 | MS.gene013399:intron | 35.0% | |
TTACATTGACAAAGCAATCG+TGG | - | chr3.4:86100492-86100511 | None:intergenic | 35.0% | |
TTGCAATTATAGGGATGTGA+TGG | + | chr3.4:86100711-86100730 | MS.gene013399:intron | 35.0% | |
! | TAATTTGCATGATAGCTTGG+TGG | + | chr3.4:86101044-86101063 | MS.gene013399:intron | 35.0% |
!! | TTAAGGTTTGAAGTTGGTGT+CGG | - | chr3.4:86101143-86101162 | None:intergenic | 35.0% |
ACCAACAGCACTAAACATTG+AGG | - | chr3.4:86101174-86101193 | None:intergenic | 40.0% | |
ACCTCAATGTTTAGTGCTGT+TGG | + | chr3.4:86101170-86101189 | MS.gene013399:CDS | 40.0% | |
ATATCAAACGAGGCCAGAAT+GGG | + | chr3.4:86100442-86100461 | MS.gene013399:CDS | 40.0% | |
ATCCGCCGTTAAAAAGTTGT+TGG | - | chr3.4:86101582-86101601 | None:intergenic | 40.0% | |
CGTCACTGCTATGATAAAGA+TGG | + | chr3.4:86101660-86101679 | MS.gene013399:CDS | 40.0% | |
GTTGTAGATTCGTGTCCTAA+AGG | - | chr3.4:86101392-86101411 | None:intergenic | 40.0% | |
TCAACAGTGGAAGAGAGTTT+GGG | - | chr3.4:86100403-86100422 | None:intergenic | 40.0% | |
TGTTGAATCCACAGTGCAAT+CGG | + | chr3.4:86100417-86100436 | MS.gene013399:CDS | 40.0% | |
TTCAACAGTGGAAGAGAGTT+TGG | - | chr3.4:86100404-86100423 | None:intergenic | 40.0% | |
! | CAAGTTTTACGTTCCAGGTT+GGG | - | chr3.4:86101070-86101089 | None:intergenic | 40.0% |
! | GACCAACAACTTTTTAACGG+CGG | + | chr3.4:86101577-86101596 | MS.gene013399:CDS | 40.0% |
! | TCTTCCAAGTTTTACGTTCC+AGG | - | chr3.4:86101075-86101094 | None:intergenic | 40.0% |
!! | TAAGGTTTGAAGTTGGTGTC+GGG | - | chr3.4:86101142-86101161 | None:intergenic | 40.0% |
!!! | GAAGACCCTTGTTTTGAACA+AGG | - | chr3.4:86101549-86101568 | None:intergenic | 40.0% |
AAGCAAGGTGCACAACCTTT+AGG | + | chr3.4:86101374-86101393 | MS.gene013399:CDS | 45.0% | |
AGCAATCGTGGAAGAACAAG+CGG | - | chr3.4:86100480-86100499 | None:intergenic | 45.0% | |
AGTACTGTAGCCACTCACTA+TGG | - | chr3.4:86101614-86101633 | None:intergenic | 45.0% | |
AGTCCTCTCACAGGATCAAA+TGG | + | chr3.4:86101691-86101710 | MS.gene013399:CDS | 45.0% | |
CAAATTGCCCAAACACGGTA+GGG | + | chr3.4:86101452-86101471 | MS.gene013399:CDS | 45.0% | |
CACGAGCAGAGTTTCTATTC+GGG | - | chr3.4:86100788-86100807 | None:intergenic | 45.0% | |
CAGGATCAAATGGAGAGATC+AGG | + | chr3.4:86101701-86101720 | MS.gene013399:CDS | 45.0% | |
CATAGCAGTGACGAAATCTG+AGG | - | chr3.4:86101653-86101672 | None:intergenic | 45.0% | |
CATATCAAACGAGGCCAGAA+TGG | + | chr3.4:86100441-86100460 | MS.gene013399:CDS | 45.0% | |
CATTCTGGCCTCGTTTGATA+TGG | - | chr3.4:86100443-86100462 | None:intergenic | 45.0% | |
CATTGGCACTCCCTATTATG+AGG | - | chr3.4:86100345-86100364 | None:intergenic | 45.0% | |
CCAACCTGGAACGTAAAACT+TGG | + | chr3.4:86101068-86101087 | MS.gene013399:CDS | 45.0% | |
CCACGAGCAGAGTTTCTATT+CGG | - | chr3.4:86100789-86100808 | None:intergenic | 45.0% | |
GCCAGGACATACATTCTCTA+CGG | - | chr3.4:86100841-86100860 | None:intergenic | 45.0% | |
GGTGATATTAGTCCTCTCAC+AGG | + | chr3.4:86101682-86101701 | MS.gene013399:CDS | 45.0% | |
TACAATTGCAACGGAGTCTG+CGG | - | chr3.4:86100898-86100917 | None:intergenic | 45.0% | |
TCAAATTGCCCAAACACGGT+AGG | + | chr3.4:86101451-86101470 | MS.gene013399:CDS | 45.0% | |
TCTCCATTTGATCCTGTGAG+AGG | - | chr3.4:86101697-86101716 | None:intergenic | 45.0% | |
TTGCACTGTGGATTCAACAG+TGG | - | chr3.4:86100416-86100435 | None:intergenic | 45.0% | |
! | AAGGACTTGGTCACATTGTC+AGG | + | chr3.4:86101203-86101222 | MS.gene013399:CDS | 45.0% |
! | CCAAGTTTTACGTTCCAGGT+TGG | - | chr3.4:86101071-86101090 | None:intergenic | 45.0% |
! | TGGTCTTTCTAGCAAGGACT+TGG | + | chr3.4:86101190-86101209 | MS.gene013399:CDS | 45.0% |
!! | TGCTGTTGGTCTTTCTAGCA+AGG | + | chr3.4:86101184-86101203 | MS.gene013399:CDS | 45.0% |
!!! | TAATTTTCAAATAATTAATT+TGG | + | chr3.4:86101313-86101332 | MS.gene013399:intron | 5.0% |
AATCGTGGAAGAACAAGCGG+AGG | - | chr3.4:86100477-86100496 | None:intergenic | 50.0% | |
AGGGTCAGGGGACAACAATT+TGG | + | chr3.4:86101471-86101490 | MS.gene013399:CDS | 50.0% | |
CCGAATAGAAACTCTGCTCG+TGG | + | chr3.4:86100786-86100805 | MS.gene013399:CDS | 50.0% | |
CGCACACAATTGGACAAGCA+AGG | + | chr3.4:86101359-86101378 | MS.gene013399:CDS | 50.0% | |
GCAATCGGCCATATCAAACG+AGG | + | chr3.4:86100432-86100451 | MS.gene013399:CDS | 50.0% | |
GCCGTAGAGAATGTATGTCC+TGG | + | chr3.4:86100837-86100856 | MS.gene013399:CDS | 50.0% | |
GTAGCCACTCACTATGGAGT+TGG | - | chr3.4:86101608-86101627 | None:intergenic | 50.0% | |
GTGGGAGTCTGAAGATCAAG+AGG | - | chr3.4:86101499-86101518 | None:intergenic | 50.0% | |
TCAGCACATGATACAACGCC+AGG | - | chr3.4:86100858-86100877 | None:intergenic | 50.0% | |
TCCACCAACTCCATAGTGAG+TGG | + | chr3.4:86101601-86101620 | MS.gene013399:CDS | 50.0% | |
TGACTAGGTGCGCACACAAT+TGG | + | chr3.4:86101349-86101368 | MS.gene013399:intron | 50.0% | |
TGATATGGCCGATTGCACTG+TGG | - | chr3.4:86100428-86100447 | None:intergenic | 50.0% | |
TGGAAGAAGAGACGCCAAGA+CGG | + | chr3.4:86101088-86101107 | MS.gene013399:CDS | 50.0% | |
! | AGCAGATTGACTAGCCGTCT+TGG | - | chr3.4:86101105-86101124 | None:intergenic | 50.0% |
GCCACTCACTATGGAGTTGG+TGG | - | chr3.4:86101605-86101624 | None:intergenic | 55.0% | |
GTGGAAGAACAAGCGGAGGA+TGG | - | chr3.4:86100473-86100492 | None:intergenic | 55.0% | |
!! | GAGGATGGAAGCACCCATTC+TGG | - | chr3.4:86100458-86100477 | None:intergenic | 55.0% |
!! | TGAAGTTGGTGTCGGGATCG+CGG | - | chr3.4:86101135-86101154 | None:intergenic | 55.0% |
CCCAAACACGGTAGGGTCAG+GGG | + | chr3.4:86101459-86101478 | MS.gene013399:CDS | 60.0% | |
CCCCTGACCCTACCGTGTTT+GGG | - | chr3.4:86101462-86101481 | None:intergenic | 60.0% | |
GCCCAAACACGGTAGGGTCA+GGG | + | chr3.4:86101458-86101477 | MS.gene013399:CDS | 60.0% | |
TCCCCTGACCCTACCGTGTT+TGG | - | chr3.4:86101463-86101482 | None:intergenic | 60.0% | |
TGCCCAAACACGGTAGGGTC+AGG | + | chr3.4:86101457-86101476 | MS.gene013399:CDS | 60.0% | |
! | GATAGCTTGGTGGCCCAACC+TGG | + | chr3.4:86101054-86101073 | MS.gene013399:intron | 60.0% |
AACGGAGTCTGCGGCAGCGA+TGG | - | chr3.4:86100889-86100908 | None:intergenic | 65.0% | |
AGTCTGCGGCAGCGATGGCA+AGG | - | chr3.4:86100884-86100903 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 86100289 | 86101747 | 86100289 | ID=MS.gene013399 |
chr3.4 | mRNA | 86100289 | 86101747 | 86100289 | ID=MS.gene013399.t1;Parent=MS.gene013399 |
chr3.4 | exon | 86100289 | 86100507 | 86100289 | ID=MS.gene013399.t1.exon1;Parent=MS.gene013399.t1 |
chr3.4 | CDS | 86100289 | 86100507 | 86100289 | ID=cds.MS.gene013399.t1;Parent=MS.gene013399.t1 |
chr3.4 | exon | 86100723 | 86100914 | 86100723 | ID=MS.gene013399.t1.exon2;Parent=MS.gene013399.t1 |
chr3.4 | CDS | 86100723 | 86100914 | 86100723 | ID=cds.MS.gene013399.t1;Parent=MS.gene013399.t1 |
chr3.4 | exon | 86101059 | 86101224 | 86101059 | ID=MS.gene013399.t1.exon3;Parent=MS.gene013399.t1 |
chr3.4 | CDS | 86101059 | 86101224 | 86101059 | ID=cds.MS.gene013399.t1;Parent=MS.gene013399.t1 |
chr3.4 | exon | 86101356 | 86101747 | 86101356 | ID=MS.gene013399.t1.exon4;Parent=MS.gene013399.t1 |
chr3.4 | CDS | 86101356 | 86101747 | 86101356 | ID=cds.MS.gene013399.t1;Parent=MS.gene013399.t1 |
Gene Sequence |
Protein sequence |