AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008562

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008562.t1 MTR_3g466200 96.562 320 11 0 1 320 1 320 0.0 638
MS.gene008562.t1 MTR_5g074970 72.013 318 88 1 4 320 9 326 1.60e-169 474
MS.gene008562.t1 MTR_5g083860 69.579 309 93 1 12 320 18 325 7.91e-161 452
MS.gene008562.t1 MTR_3g094650 67.516 314 101 1 7 320 10 322 3.12e-155 437
MS.gene008562.t1 MTR_3g094670 67.197 314 102 1 7 320 10 322 1.21e-153 433
MS.gene008562.t1 MTR_3g094630 67.197 314 102 1 7 320 10 322 3.52e-150 424
MS.gene008562.t1 MTR_2g084090 58.125 320 132 2 1 320 1 318 2.94e-133 381
MS.gene008562.t1 MTR_2g084080 56.563 320 136 2 1 320 1 317 5.57e-131 375
MS.gene008562.t1 MTR_2g084110 56.250 320 137 2 1 320 1 317 1.45e-129 372
MS.gene008562.t1 MTR_3g072190 59.177 316 119 3 12 320 6 318 8.89e-129 370
MS.gene008562.t1 MTR_7g072480 57.278 316 132 2 5 320 4 316 9.08e-128 367
MS.gene008562.t1 MTR_4g029200 56.410 312 132 3 10 320 30 338 1.41e-127 368
MS.gene008562.t1 MTR_2g084020 56.698 321 135 4 1 320 1 318 2.60e-127 366
MS.gene008562.t1 MTR_4g083710 57.716 324 130 5 3 320 2 324 1.57e-126 365
MS.gene008562.t1 MTR_7g072510 55.128 312 137 2 9 320 4 312 1.72e-126 364
MS.gene008562.t1 MTR_5g074860 57.055 326 127 7 1 317 1 322 3.67e-124 358
MS.gene008562.t1 MTR_2g084010 54.829 321 141 3 1 320 1 318 1.32e-123 357
MS.gene008562.t1 MTR_4g029170 57.962 314 128 3 8 320 11 321 6.96e-123 355
MS.gene008562.t1 MTR_4g074995 57.729 317 115 5 7 320 8 308 9.68e-123 354
MS.gene008562.t1 MTR_4g029190 56.393 305 131 2 17 320 37 340 1.34e-122 355
MS.gene008562.t1 MTR_4g029180 59.524 294 116 2 28 320 30 321 7.13e-120 348
MS.gene008562.t1 MTR_2g084000 54.430 316 138 5 8 320 7 319 2.03e-119 346
MS.gene008562.t1 MTR_3g466180 56.508 315 134 2 6 320 12 323 9.60e-118 342
MS.gene008562.t1 MTR_1g115900 53.894 321 140 5 4 320 5 321 1.02e-116 340
MS.gene008562.t1 MTR_7g026990 53.968 315 139 5 8 320 12 322 2.15e-116 339
MS.gene008562.t1 MTR_5g074740 55.987 309 127 7 17 320 17 321 2.51e-115 336
MS.gene008562.t1 MTR_5g074760 54.062 320 137 8 7 320 6 321 2.92e-115 336
MS.gene008562.t1 MTR_5g074710 55.340 309 129 7 17 320 17 321 1.30e-113 332
MS.gene008562.t1 MTR_4g074990 53.822 314 126 5 10 320 8 305 2.14e-113 330
MS.gene008562.t1 MTR_3g467600 51.393 323 149 6 3 320 5 324 7.04e-111 325
MS.gene008562.t1 MTR_3g072190 62.055 253 93 2 68 320 2 251 8.82e-107 311
MS.gene008562.t1 MTR_7g093370 49.695 328 151 7 4 320 47 371 4.74e-104 309
MS.gene008562.t1 MTR_8g076820 50.658 304 139 4 25 320 30 330 2.18e-102 303
MS.gene008562.t1 MTR_5g021060 50.000 304 141 4 25 320 30 330 3.08e-102 303
MS.gene008562.t1 MTR_4g074980 50.000 314 127 5 10 320 8 294 4.01e-102 301
MS.gene008562.t1 MTR_1g054205 48.438 320 152 6 11 320 10 326 2.95e-100 298
MS.gene008562.t1 MTR_1g022970 51.148 305 137 4 25 320 46 347 9.09e-100 297
MS.gene008562.t1 MTR_2g040000 51.603 312 132 6 22 320 26 331 5.28e-99 295
MS.gene008562.t1 MTR_5g017850 47.188 320 159 3 8 320 10 326 7.74e-99 294
MS.gene008562.t1 MTR_4g125940 49.383 324 148 6 8 320 11 329 1.50e-98 294
MS.gene008562.t1 MTR_5g017860 45.938 320 163 3 8 320 10 326 1.11e-96 289
MS.gene008562.t1 MTR_4g074980 56.680 247 102 4 10 252 8 253 4.18e-96 285
MS.gene008562.t1 MTR_5g049280 45.808 334 154 7 9 320 9 337 7.95e-96 287
MS.gene008562.t1 MTR_2g029830 48.387 310 148 4 20 320 23 329 1.02e-95 287
MS.gene008562.t1 MTR_5g074860 49.387 326 113 9 1 317 1 283 1.02e-95 285
MS.gene008562.t1 MTR_5g014100 49.038 312 143 4 22 320 23 331 1.75e-95 286
MS.gene008562.t1 MTR_2g029730 47.170 318 156 4 12 320 12 326 2.61e-95 286
MS.gene008562.t1 MTR_2g028980 50.162 309 142 5 21 320 25 330 2.85e-95 286
MS.gene008562.t1 MTR_2g029750 47.531 324 154 6 10 320 10 330 3.63e-95 286
MS.gene008562.t1 MTR_2g029800 48.148 324 152 5 10 320 10 330 4.46e-95 286
MS.gene008562.t1 MTR_4g122640 48.333 300 150 3 25 320 38 336 2.29e-94 283
MS.gene008562.t1 MTR_2g029860 47.500 320 153 5 13 320 14 330 2.92e-94 283
MS.gene008562.t1 MTR_2g029815 47.077 325 156 5 9 320 9 330 2.96e-94 283
MS.gene008562.t1 MTR_2g029850 47.706 327 155 5 7 320 7 330 2.31e-93 281
MS.gene008562.t1 MTR_2g029560 46.178 314 157 5 16 320 15 325 2.99e-93 281
MS.gene008562.t1 MTR_2g029820 46.154 325 159 5 9 320 9 330 2.35e-92 279
MS.gene008562.t1 MTR_4g031140 46.254 307 152 5 21 320 24 324 4.98e-91 275
MS.gene008562.t1 MTR_2g029740 45.679 324 160 6 10 320 10 330 1.65e-89 271
MS.gene008562.t1 MTR_4g030890 45.484 310 156 5 18 320 93 396 2.31e-89 273
MS.gene008562.t1 MTR_4g125940 51.799 278 118 6 54 320 2 274 5.64e-88 265
MS.gene008562.t1 MTR_2g029910 44.753 324 164 5 10 320 11 332 8.88e-88 267
MS.gene008562.t1 MTR_1g101830 40.122 329 181 6 1 320 1 322 8.46e-84 256
MS.gene008562.t1 MTR_2g088770 43.478 322 168 7 8 320 9 325 2.11e-83 255
MS.gene008562.t1 MTR_0155s0040 42.763 304 165 5 18 320 20 315 9.23e-81 248
MS.gene008562.t1 MTR_1g077000 42.056 321 169 6 9 320 15 327 9.45e-81 248
MS.gene008562.t1 MTR_4g046713 41.692 331 177 7 1 320 1 326 4.46e-80 246
MS.gene008562.t1 MTR_2g029830 47.876 259 123 4 71 320 6 261 5.16e-77 237
MS.gene008562.t1 MTR_3g092990 40.248 323 182 4 6 320 7 326 4.10e-76 236
MS.gene008562.t1 MTR_1g086320 41.212 330 181 5 3 320 5 333 4.81e-76 236
MS.gene008562.t1 MTR_7g029030 39.938 323 174 6 8 320 8 320 5.77e-76 236
MS.gene008562.t1 MTR_5g022870 40.187 321 175 8 7 320 6 316 2.65e-75 234
MS.gene008562.t1 MTR_1g025980 40.000 315 174 6 9 316 8 314 2.25e-74 231
MS.gene008562.t1 MTR_8g075100 41.914 303 160 7 25 320 26 319 3.81e-74 231
MS.gene008562.t1 MTR_6g043280 43.210 324 166 7 8 320 16 332 1.48e-73 230
MS.gene008562.t1 MTR_2g008710 40.240 333 178 7 1 320 1 325 2.69e-72 226
MS.gene008562.t1 MTR_1g086490 40.237 338 180 7 3 320 5 340 6.25e-72 226
MS.gene008562.t1 MTR_2g437770 40.461 304 161 6 25 320 50 341 8.31e-71 223
MS.gene008562.t1 MTR_4g114210 40.432 324 173 7 9 320 5 320 1.29e-69 219
MS.gene008562.t1 MTR_6g027440 38.535 314 187 4 9 320 5 314 2.09e-68 216
MS.gene008562.t1 MTR_7g086870 40.604 298 167 5 25 320 22 311 3.44e-68 216
MS.gene008562.t1 MTR_1g038680 40.397 302 168 5 29 320 33 332 1.23e-67 215
MS.gene008562.t1 MTR_4g133800 39.465 299 162 6 30 320 46 333 1.49e-67 214
MS.gene008562.t1 MTR_7g086820 39.604 303 170 4 23 320 18 312 3.25e-67 213
MS.gene008562.t1 MTR_1g090760 38.438 320 184 6 11 320 14 330 6.83e-67 213
MS.gene008562.t1 MTR_3g092990 38.390 323 177 5 6 320 7 315 8.24e-66 209
MS.gene008562.t1 MTR_2g077990 37.126 334 171 7 23 319 74 405 3.11e-65 211
MS.gene008562.t1 MTR_4g087965 39.640 333 173 8 9 316 13 342 4.93e-65 208
MS.gene008562.t1 MTR_5g074700 51.770 226 90 8 98 320 5 214 6.46e-65 204
MS.gene008562.t1 MTR_1g066710 36.545 301 186 4 23 320 25 323 1.43e-64 207
MS.gene008562.t1 MTR_4g132490 34.796 319 201 3 7 320 11 327 1.55e-64 207
MS.gene008562.t1 MTR_2g067440 36.170 329 172 7 23 316 58 383 1.69e-64 208
MS.gene008562.t1 MTR_5g016010 37.812 320 182 7 9 316 11 325 2.67e-64 206
MS.gene008562.t1 MTR_7g107520 37.072 321 185 8 9 320 8 320 2.06e-63 203
MS.gene008562.t1 MTR_1g066380 36.213 301 187 4 23 320 25 323 2.07e-63 204
MS.gene008562.t1 MTR_2g078610 36.228 334 174 7 23 319 74 405 3.49e-63 206
MS.gene008562.t1 MTR_6g043460 37.461 323 187 5 8 320 11 328 4.57e-63 203
MS.gene008562.t1 MTR_2g008160 40.000 315 169 7 18 320 17 323 4.83e-63 202
MS.gene008562.t1 MTR_8g062780 38.580 324 185 7 7 320 5 324 1.55e-62 201
MS.gene008562.t1 MTR_6g043240 39.130 299 170 6 25 320 42 331 4.70e-62 201
MS.gene008562.t1 MTR_4g127670 39.159 309 168 7 24 320 23 323 7.75e-62 199
MS.gene008562.t1 MTR_3g072210 55.319 188 79 4 135 320 54 238 9.06e-62 196
MS.gene008562.t1 MTR_1g009750 37.037 324 186 8 9 320 11 328 3.10e-61 198
MS.gene008562.t1 MTR_1g066680 35.216 301 189 5 23 320 25 322 4.90e-61 197
MS.gene008562.t1 MTR_4g095450 37.460 315 185 7 12 319 14 323 5.25e-61 197
MS.gene008562.t1 MTR_1g066640 35.880 301 188 4 23 320 25 323 6.25e-61 197
MS.gene008562.t1 MTR_3g105790 33.739 329 202 4 1 320 1 322 4.63e-60 195
MS.gene008562.t1 MTR_2g078280 36.137 321 166 7 23 306 74 392 6.93e-59 194
MS.gene008562.t1 MTR_0286s0010 34.405 311 193 6 18 320 27 334 1.11e-58 192
MS.gene008562.t1 MTR_6g008075 34.405 311 193 6 18 320 27 334 1.11e-58 192
MS.gene008562.t1 MTR_2g099175 33.131 329 197 5 9 320 13 335 5.13e-57 187
MS.gene008562.t1 MTR_7g072490 42.798 243 82 2 71 313 2 187 1.33e-56 182
MS.gene008562.t1 MTR_4g132110 33.231 325 203 7 4 316 2 324 9.49e-56 184
MS.gene008562.t1 MTR_2g008730 42.449 245 125 5 87 320 62 301 8.83e-55 181
MS.gene008562.t1 MTR_5g033470 35.987 314 186 8 19 320 67 377 4.73e-54 181
MS.gene008562.t1 MTR_4g132110 32.727 330 203 8 4 316 2 329 1.93e-53 178
MS.gene008562.t1 MTR_2g008160 37.338 308 152 7 18 320 17 288 2.04e-52 174
MS.gene008562.t1 MTR_0147s0010 32.177 317 175 6 25 316 77 378 2.22e-52 177
MS.gene008562.t1 MTR_2g067450 35.873 315 164 11 23 316 9 306 4.07e-52 174
MS.gene008562.t1 MTR_1g009750 35.938 320 178 8 9 320 11 311 5.83e-52 174
MS.gene008562.t1 MTR_1g066380 35.686 255 159 4 69 320 3 255 2.59e-50 168
MS.gene008562.t1 MTR_2g008160 47.753 178 88 3 18 195 17 189 2.40e-46 156
MS.gene008562.t1 MTR_3g072260 59.848 132 48 1 7 133 3 134 7.59e-46 152
MS.gene008562.t1 MTR_3g105790 35.537 242 144 3 88 320 8 246 2.28e-41 144
MS.gene008562.t1 MTR_2g029880 40.415 193 93 4 137 320 9 188 1.94e-38 135
MS.gene008562.t1 MTR_2g078560 31.858 226 117 5 130 319 95 319 3.05e-27 108
MS.gene008562.t1 MTR_2g077980 30.072 276 147 8 87 319 11 283 4.55e-27 107
MS.gene008562.t1 MTR_5g074770 53.125 96 42 2 224 317 12 106 4.66e-27 102
MS.gene008562.t1 MTR_7g086790 33.862 189 105 5 72 259 17 186 6.49e-24 97.1
MS.gene008562.t1 MTR_5g058120 36.943 157 89 3 162 316 7 155 3.04e-23 96.7
MS.gene008562.t1 MTR_4g031040 36.095 169 68 5 86 254 3 131 1.06e-22 92.0
MS.gene008562.t1 MTR_4g114220 57.317 82 25 2 51 132 29 100 1.82e-21 89.0
MS.gene008562.t1 MTR_3g462850 38.356 146 70 6 190 320 9 149 8.38e-21 87.4
MS.gene008562.t1 MTR_6g048160 59.722 72 25 2 64 135 22 89 1.00e-20 85.5
MS.gene008562.t1 MTR_3g107060 28.682 258 116 10 57 299 106 310 6.52e-19 85.9
MS.gene008562.t1 MTR_1g098320 47.368 76 40 0 241 316 45 120 2.74e-16 75.1
MS.gene008562.t1 MTR_1g089005 36.090 133 77 3 11 137 2 132 1.69e-15 73.2
MS.gene008562.t1 MTR_2g029930 38.298 94 33 2 21 103 15 94 1.79e-14 68.9
MS.gene008562.t1 MTR_7g086810 31.034 116 54 1 23 138 4 93 9.16e-12 64.3
MS.gene008562.t1 MTR_6g071110 37.736 106 52 3 81 186 70 161 1.47e-11 62.4
MS.gene008562.t1 MTR_7g086785 41.667 72 41 1 71 142 4 74 2.98e-11 60.8
MS.gene008562.t1 MTR_3g086710 50.000 54 27 0 17 70 11 64 5.62e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008562.t1 AT5G05340 69.463 298 90 1 23 320 28 324 3.57e-154 435
MS.gene008562.t1 AT5G58400 64.968 314 110 0 7 320 12 325 3.85e-153 432
MS.gene008562.t1 AT5G58390 66.026 312 106 0 9 320 5 316 1.70e-149 422
MS.gene008562.t1 AT1G14550 53.185 314 141 5 11 320 10 321 2.20e-114 334
MS.gene008562.t1 AT1G14540 50.321 312 150 4 11 320 7 315 4.08e-107 315
MS.gene008562.t1 AT5G06720 47.649 319 155 4 11 320 18 333 3.01e-103 306
MS.gene008562.t1 AT4G36430 48.693 306 146 4 23 320 28 330 4.40e-103 305
MS.gene008562.t1 AT1G44970 49.518 311 145 4 19 320 39 346 7.99e-103 305
MS.gene008562.t1 AT5G06730 47.649 319 155 5 11 320 19 334 6.15e-102 303
MS.gene008562.t1 AT2G18150 45.428 339 163 5 1 320 1 336 6.48e-102 303
MS.gene008562.t1 AT5G66390 47.403 308 151 4 21 320 29 333 4.31e-101 300
MS.gene008562.t1 AT3G50990 48.220 309 149 5 20 320 36 341 2.16e-99 296
MS.gene008562.t1 AT2G18140 46.624 311 155 4 18 320 28 335 8.94e-98 292
MS.gene008562.t1 AT2G38390 48.297 323 152 7 10 320 14 333 6.02e-96 288
MS.gene008562.t1 AT2G35380 46.667 330 156 6 8 320 9 335 1.48e-95 286
MS.gene008562.t1 AT4G16270 50.000 302 134 6 29 320 54 348 4.12e-95 286
MS.gene008562.t1 AT4G08780 47.134 314 152 5 18 320 17 327 2.62e-93 281
MS.gene008562.t1 AT3G32980 47.588 311 149 5 21 320 27 334 4.11e-93 281
MS.gene008562.t1 AT4G08770 48.089 314 149 5 18 320 17 327 5.43e-93 280
MS.gene008562.t1 AT1G49570 48.684 304 145 4 22 316 45 346 6.23e-93 280
MS.gene008562.t1 AT1G68850 41.791 335 167 6 11 320 4 335 1.03e-92 279
MS.gene008562.t1 AT2G38380 47.678 323 154 7 10 320 14 333 1.13e-92 280
MS.gene008562.t1 AT5G19890 46.914 324 149 7 11 320 13 327 2.89e-90 273
MS.gene008562.t1 AT3G49110 45.597 318 159 5 14 320 22 336 8.76e-87 265
MS.gene008562.t1 AT3G49120 44.892 323 164 5 9 320 16 335 8.87e-87 265
MS.gene008562.t1 AT2G22420 43.125 320 169 5 8 320 6 319 1.32e-86 263
MS.gene008562.t1 AT5G19880 43.653 323 166 6 11 320 10 329 1.42e-85 261
MS.gene008562.t1 AT5G51890 41.463 328 178 6 1 320 1 322 2.29e-82 252
MS.gene008562.t1 AT3G01190 42.249 329 173 7 1 320 1 321 8.72e-82 251
MS.gene008562.t1 AT4G33420 44.089 313 164 6 11 320 21 325 1.32e-81 250
MS.gene008562.t1 AT4G33420 44.089 313 164 6 11 320 68 372 5.34e-81 250
MS.gene008562.t1 AT1G05260 43.210 324 167 8 9 320 7 325 6.09e-79 244
MS.gene008562.t1 AT4G11290 41.049 324 176 6 9 320 6 326 7.76e-78 241
MS.gene008562.t1 AT5G17820 41.121 321 167 7 8 320 7 313 1.49e-77 239
MS.gene008562.t1 AT5G17820 41.121 321 167 7 8 320 60 366 1.80e-76 239
MS.gene008562.t1 AT5G15180 39.877 326 176 8 8 320 11 329 7.44e-75 233
MS.gene008562.t1 AT5G14130 38.679 318 180 5 12 320 19 330 1.17e-74 233
MS.gene008562.t1 AT3G03670 39.815 324 178 5 7 320 5 321 1.48e-74 232
MS.gene008562.t1 AT5G14130 38.679 318 180 5 12 320 60 371 5.83e-74 232
MS.gene008562.t1 AT5G42180 41.083 314 170 7 11 317 9 314 1.71e-73 229
MS.gene008562.t1 AT2G35380 49.798 247 108 5 87 320 4 247 1.82e-73 227
MS.gene008562.t1 AT5G64120 40.468 299 162 6 29 320 39 328 6.92e-73 228
MS.gene008562.t1 AT3G21770 41.424 309 167 7 17 316 21 324 2.58e-72 227
MS.gene008562.t1 AT1G71695 41.137 299 170 4 25 320 44 339 3.53e-72 227
MS.gene008562.t1 AT2G41480 39.450 327 176 8 8 320 10 328 3.65e-71 224
MS.gene008562.t1 AT1G30870 40.850 306 160 6 25 320 51 345 9.44e-70 221
MS.gene008562.t1 AT4G26010 39.557 316 180 5 7 320 3 309 1.48e-69 219
MS.gene008562.t1 AT4G26010 38.941 321 185 5 2 320 26 337 3.32e-69 219
MS.gene008562.t1 AT1G05240 38.411 302 170 6 25 316 26 321 7.39e-69 218
MS.gene008562.t1 AT1G05250 38.411 302 170 6 25 316 26 321 7.39e-69 218
MS.gene008562.t1 AT5G40150 36.634 303 187 4 21 320 28 328 8.84e-68 215
MS.gene008562.t1 AT3G28200 36.304 303 189 4 20 320 16 316 3.05e-67 213
MS.gene008562.t1 AT1G77100 40.557 323 174 8 9 320 4 319 4.04e-67 213
MS.gene008562.t1 AT1G34510 39.297 313 179 7 10 320 6 309 5.38e-67 213
MS.gene008562.t1 AT5G39580 39.688 320 176 8 10 320 8 319 1.27e-66 212
MS.gene008562.t1 AT5G67400 38.629 321 180 7 12 320 14 329 1.09e-65 210
MS.gene008562.t1 AT4G25980 38.769 325 178 7 9 320 10 326 1.40e-65 209
MS.gene008562.t1 AT4G37530 38.217 314 179 6 18 320 20 329 2.34e-65 209
MS.gene008562.t1 AT2G18980 40.061 327 172 9 7 320 8 323 7.50e-65 207
MS.gene008562.t1 AT4G31760 37.304 319 183 6 12 320 15 326 1.61e-64 206
MS.gene008562.t1 AT4G17690 38.000 300 179 5 25 320 26 322 2.51e-64 206
MS.gene008562.t1 AT5G47000 37.975 316 186 6 11 320 19 330 3.04e-64 206
MS.gene008562.t1 AT2G24800 35.505 307 183 5 23 320 29 329 1.74e-62 201
MS.gene008562.t1 AT4G37520 38.387 310 174 7 23 320 25 329 5.31e-62 200
MS.gene008562.t1 AT3G49960 37.695 321 183 8 12 320 14 329 5.49e-62 200
MS.gene008562.t1 AT2G34060 40.717 307 165 9 24 317 41 343 3.32e-61 199
MS.gene008562.t1 AT1G24110 37.578 322 183 8 12 320 6 322 1.31e-60 196
MS.gene008562.t1 AT4G37520 38.065 310 172 8 23 320 25 326 2.97e-60 196
MS.gene008562.t1 AT4G33870 31.325 332 186 5 25 316 68 397 3.62e-60 197
MS.gene008562.t1 AT4G30170 37.942 311 172 6 22 320 24 325 4.48e-60 195
MS.gene008562.t1 AT2G37130 35.880 301 187 5 24 320 29 327 1.98e-59 194
MS.gene008562.t1 AT2G37130 36.455 299 180 6 28 320 2 296 4.57e-59 192
MS.gene008562.t1 AT5G64100 33.333 342 195 7 1 320 1 331 3.96e-57 187
MS.gene008562.t1 AT5G64110 35.671 328 184 7 11 320 12 330 1.76e-56 186
MS.gene008562.t1 AT4G37530 39.924 263 143 6 18 269 20 278 3.58e-55 181
MS.gene008562.t1 AT4G21960 33.123 317 201 5 9 316 9 323 1.12e-54 181
MS.gene008562.t1 AT5G22410 37.134 307 171 9 24 318 27 323 4.12e-54 180
MS.gene008562.t1 AT2G39040 36.422 313 186 7 19 320 40 350 5.32e-54 180
MS.gene008562.t1 AT2G43480 32.808 317 194 5 16 320 26 335 2.76e-52 175
MS.gene008562.t1 AT5G24070 34.471 293 171 6 42 320 50 335 1.02e-51 174
MS.gene008562.t1 AT3G17070 31.962 316 203 4 12 316 21 335 7.43e-49 166
MS.gene008562.t1 AT4G25980 44.324 185 98 3 9 193 55 234 4.37e-45 155
MS.gene008562.t1 AT5G39580 40.183 219 119 5 10 226 8 216 4.81e-43 148
MS.gene008562.t1 AT2G24800 40.828 169 95 2 23 191 29 192 9.39e-38 135
MS.gene008562.t1 AT3G17070 30.268 261 173 4 67 320 18 276 1.79e-35 130
MS.gene008562.t1 AT4G32320 29.391 279 127 8 36 299 96 319 6.02e-20 89.0
MS.gene008562.t1 AT3G42570 30.693 101 70 0 93 193 49 149 2.39e-13 67.0

Find 59 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCCTTGTTTCCCAGTTAA+AGG 0.132682 3.3:-54156307 None:intergenic
TTCTTATATTGCATTGCTTT+TGG 0.227972 3.3:+54151702 MS.gene008562:CDS
TCTCCTGAGCCACTTGTTCT+AGG 0.244890 3.3:-54156073 None:intergenic
AAGGACATGGTTGCTTTATC+TGG 0.287607 3.3:+54155118 MS.gene008562:CDS
GGAGATAATAAGCCTTTAAC+TGG 0.288260 3.3:+54156295 MS.gene008562:CDS
AGCAATGCAATATAAGAATT+AGG 0.345453 3.3:-54151697 None:intergenic
CTGGGAAACAAGGGGAGATT+AGG 0.373206 3.3:+54156314 MS.gene008562:CDS
AATTGATGCTATAAAATCTA+AGG 0.374906 3.3:+54154133 MS.gene008562:CDS
CCTCTCACCGAATTGTTGTT+AGG 0.386036 3.3:-54154101 None:intergenic
AAGTTGAGATAAGGTTGGTT+AGG 0.432446 3.3:-54155072 None:intergenic
TTTCAGGAGCTCACACAATA+GGG 0.432739 3.3:+54155963 MS.gene008562:intron
GGGAGATTAGGAAGAATTGT+AGG 0.435594 3.3:+54156326 MS.gene008562:CDS
CTCCTGAGCCACTTGTTCTA+GGG 0.446044 3.3:-54156072 None:intergenic
TGTAGCTGCAATGATTAAGA+TGG 0.448563 3.3:+54156273 MS.gene008562:CDS
GAGCTTTAAAAGTTGAGATA+AGG 0.452562 3.3:-54155081 None:intergenic
ATAGTACATTTGCTAAGATA+AGG 0.458266 3.3:+54156038 MS.gene008562:CDS
AGGTTGGTTAGGTTAGATGT+AGG 0.468281 3.3:-54155061 None:intergenic
TGCCCTAGAACAAGTGGCTC+AGG 0.473241 3.3:+54156070 MS.gene008562:CDS
TGCAGCTCCTAACAACAATT+CGG 0.483149 3.3:+54154094 MS.gene008562:CDS
GTTAGGTTAGATGTAGGAGC+TGG 0.487957 3.3:-54155055 None:intergenic
AATTTCACTGCTGCAAACAC+TGG 0.493527 3.3:+54155025 MS.gene008562:CDS
AAAACAAAATAGGGTTGTGA+TGG 0.494547 3.3:+54154026 MS.gene008562:intron
AAGAATCTCATTATCAAAAG+AGG 0.495616 3.3:+54156154 MS.gene008562:CDS
AAGCCTTTAACTGGGAAACA+AGG 0.501073 3.3:+54156304 MS.gene008562:CDS
TTTAAAAGTTGAGATAAGGT+TGG 0.503940 3.3:-54155077 None:intergenic
AGATAAAGCAACCATGTCCT+TGG 0.505640 3.3:-54155116 None:intergenic
ATTTCACTGCTGCAAACACT+GGG 0.508356 3.3:+54155026 MS.gene008562:CDS
CTGAAGAAGTCCCTATAAGA+AGG 0.508590 3.3:-54151729 None:intergenic
TCTGATCAAGTACTCTTCAA+TGG 0.517394 3.3:+54156187 MS.gene008562:CDS
TCAGCACATGAGACCACACC+GGG 0.520500 3.3:-54154170 None:intergenic
GATGACACTTCATCCTTCAA+AGG 0.526121 3.3:+54154062 MS.gene008562:CDS
AGGACTTTCTGCCAAGGACA+TGG 0.532504 3.3:+54155105 MS.gene008562:CDS
GTAGCTGCAATGATTAAGAT+GGG 0.533136 3.3:+54156274 MS.gene008562:CDS
TAATTGTTGTCAAAATGAGT+TGG 0.542091 3.3:-54156127 None:intergenic
TGTTGCTGTCGTTGTATATG+TGG 0.550869 3.3:-54156012 None:intergenic
GGTCTCATGTGCTGATATAG+TGG 0.564157 3.3:+54154178 MS.gene008562:CDS
AGCTACAAAATCAGAGTCAA+AGG 0.564921 3.3:-54156257 None:intergenic
AACAGAATCACGAGCAGTAA+TGG 0.568501 3.3:-54154201 None:intergenic
GCAAGGTGTACAAGTTTCAG+AGG 0.574999 3.3:+54155989 MS.gene008562:CDS
CCTAACAACAATTCGGTGAG+AGG 0.578364 3.3:+54154101 MS.gene008562:CDS
AGCCTTTAACTGGGAAACAA+GGG 0.580782 3.3:+54156305 MS.gene008562:CDS
AAGAACTGCCCTAGAACAAG+TGG 0.582954 3.3:+54156064 MS.gene008562:CDS
CTCACACAATAGGGAGAGCA+AGG 0.588677 3.3:+54155972 MS.gene008562:CDS
AAACAAAATAGGGTTGTGAT+GGG 0.589771 3.3:+54154027 MS.gene008562:intron
TGATGCTATAAAATCTAAGG+TGG 0.606554 3.3:+54154136 MS.gene008562:CDS
AGTCGTGGAAGAAGAGACGA+AGG 0.608143 3.3:-54151861 None:intergenic
AGCTCAAGGACTTTCTGCCA+AGG 0.614786 3.3:+54155099 MS.gene008562:CDS
TTACATCAACAAAGCAGTCG+TGG 0.618609 3.3:-54151876 None:intergenic
AAGTTGGGAGAAGAGATTCA+AGG 0.621582 3.3:+54154996 MS.gene008562:CDS
GCCTTTAACTGGGAAACAAG+GGG 0.634825 3.3:+54156306 MS.gene008562:CDS
GATCAAGTACTCTTCAATGG+TGG 0.638235 3.3:+54156190 MS.gene008562:CDS
ATCAGCACATGAGACCACAC+CGG 0.642740 3.3:-54154171 None:intergenic
AAGGTGGAAGCAATATGCCC+CGG 0.653465 3.3:+54154152 MS.gene008562:CDS
GAGATAATAAGCCTTTAACT+GGG 0.654488 3.3:+54156296 MS.gene008562:CDS
GTTGCCAAAGAAAATCGCAT+CGG 0.655320 3.3:+54151829 MS.gene008562:CDS
GGAAGCAATATGCCCCGGTG+TGG 0.677996 3.3:+54154157 MS.gene008562:CDS
GCAGACTGTTGTTAAAACAG+CGG 0.689081 3.3:+54151807 MS.gene008562:CDS
TTTCACTGCTGCAAACACTG+GGG 0.769355 3.3:+54155027 MS.gene008562:CDS
CAGCACATGAGACCACACCG+GGG 0.839989 3.3:-54154169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTA+TGG - chr3.3:54154871-54154890 None:intergenic 0.0%
!! AAGAAAATAAACAATTAATT+AGG - chr3.3:54152186-54152205 None:intergenic 10.0%
!! AGAAAATAAACAATTAATTA+GGG - chr3.3:54152185-54152204 None:intergenic 10.0%
!!! ATGAATTAACTATTTTTTTA+AGG - chr3.3:54153634-54153653 None:intergenic 10.0%
!!! GTATTTATTTGAAATAAAAA+TGG - chr3.3:54155549-54155568 None:intergenic 10.0%
!!! TAGTAAATAAATATTTTGAT+TGG - chr3.3:54152637-54152656 None:intergenic 10.0%
!!! TTGTTTTAATTTTCAAATAA+TGG - chr3.3:54155180-54155199 None:intergenic 10.0%
!! AAAATTATATGAATCTTTGA+CGG + chr3.3:54155770-54155789 MS.gene008562:intron 15.0%
!! AAGAAAAAAAACTTAAAAGT+CGG + chr3.3:54153710-54153729 MS.gene008562:intron 15.0%
!! ACAATGAAAATTTATAGATA+GGG + chr3.3:54152443-54152462 MS.gene008562:intron 15.0%
!! ATAACTACATAATTGTTATA+CGG + chr3.3:54155345-54155364 MS.gene008562:intron 15.0%
!! TACAATGAAAATTTATAGAT+AGG + chr3.3:54152442-54152461 MS.gene008562:intron 15.0%
!!! AAACATAATTGACAATTTTT+AGG + chr3.3:54154293-54154312 MS.gene008562:intron 15.0%
!!! AAATTTTTCATATCATCTTA+TGG - chr3.3:54153549-54153568 None:intergenic 15.0%
!!! AACATAATTGACAATTTTTA+GGG + chr3.3:54154294-54154313 MS.gene008562:intron 15.0%
!!! ACAACCATTTTAAATATTAT+AGG - chr3.3:54152755-54152774 None:intergenic 15.0%
!!! CTATATATGATCTTATTTTT+AGG + chr3.3:54151916-54151935 MS.gene008562:intron 15.0%
!!! GATGATAGTTTTTAATTTAA+GGG + chr3.3:54152802-54152821 MS.gene008562:intron 15.0%
!!! GTTTTATTTTTATCTTTCAA+TGG + chr3.3:54151938-54151957 MS.gene008562:intron 15.0%
!!! TAAATAAATATTTTGATTGG+AGG - chr3.3:54152634-54152653 None:intergenic 15.0%
!!! TGATGATAGTTTTTAATTTA+AGG + chr3.3:54152801-54152820 MS.gene008562:intron 15.0%
!!! TTAATAACATAATTTGTGTA+GGG - chr3.3:54153669-54153688 None:intergenic 15.0%
!!! TTTAATAACATAATTTGTGT+AGG - chr3.3:54153670-54153689 None:intergenic 15.0%
!!! TTTTATTCTTTGAAATTTGA+AGG + chr3.3:54152544-54152563 MS.gene008562:intron 15.0%
!!! TTTTTTTTCTTTTTCTTGTA+TGG - chr3.3:54153701-54153720 None:intergenic 15.0%
!! AAAAAAAAACCCTACAAATA+TGG + chr3.3:54155900-54155919 MS.gene008562:intron 20.0%
!! AAAAAAAACCCTACAAATAT+GGG + chr3.3:54155901-54155920 MS.gene008562:intron 20.0%
!! AAAAAGTAACCAAAACAAAA+AGG - chr3.3:54153450-54153469 None:intergenic 20.0%
!! AAAAGAAAAAATAACTAGCA+AGG + chr3.3:54155609-54155628 MS.gene008562:intron 20.0%
!! AACATGTAATAATCAAAACA+AGG - chr3.3:54153502-54153521 None:intergenic 20.0%
!! AATATTACCATTTGAGAATA+TGG + chr3.3:54154747-54154766 MS.gene008562:intron 20.0%
!! AATTGATGCTATAAAATCTA+AGG + chr3.3:54154133-54154152 MS.gene008562:CDS 20.0%
!! AGAAAAAAAACTTAAAAGTC+GGG + chr3.3:54153711-54153730 MS.gene008562:intron 20.0%
!! CAAGCCTATAATATTTAAAA+TGG + chr3.3:54152748-54152767 MS.gene008562:intron 20.0%
!!! AAAAGAAATTATCAGTTTTG+TGG - chr3.3:54152103-54152122 None:intergenic 20.0%
!!! AAAGAAATTATCAGTTTTGT+GGG - chr3.3:54152102-54152121 None:intergenic 20.0%
!!! AAATTTGAACCTTTTTGTTT+TGG + chr3.3:54153438-54153457 MS.gene008562:intron 20.0%
!!! ATAAAACTGTTTTATCTACA+TGG - chr3.3:54155811-54155830 None:intergenic 20.0%
!!! ATATTTTTTATTCATGACAC+AGG + chr3.3:54151997-54152016 MS.gene008562:intron 20.0%
!!! ATCGTTATTTTTTTGCTTAT+TGG - chr3.3:54152066-54152085 None:intergenic 20.0%
!!! ATTAATCTTTTTGTCTCTTT+TGG + chr3.3:54155202-54155221 MS.gene008562:intron 20.0%
!!! CATTATTTTATAAAAAGGGT+AGG - chr3.3:54154846-54154865 None:intergenic 20.0%
!!! CTACCCTTTTTATAAAATAA+TGG + chr3.3:54154844-54154863 MS.gene008562:intron 20.0%
!!! GAAATATGTTTTTTCACATA+GGG - chr3.3:54155738-54155757 None:intergenic 20.0%
!!! GGACCATTATTTTATAAAAA+GGG - chr3.3:54154850-54154869 None:intergenic 20.0%
!!! TAAATGCTATTTCACAAATT+CGG + chr3.3:54152827-54152846 MS.gene008562:intron 20.0%
!!! TAATAACATAATTTGTGTAG+GGG - chr3.3:54153668-54153687 None:intergenic 20.0%
!!! TCTATTCATGATATTTTATG+TGG + chr3.3:54155939-54155958 MS.gene008562:intron 20.0%
!!! TGAAATATGTTTTTTCACAT+AGG - chr3.3:54155739-54155758 None:intergenic 20.0%
!!! TGGACCATTATTTTATAAAA+AGG - chr3.3:54154851-54154870 None:intergenic 20.0%
!!! TGTTTTTGTATTTTACTGTT+CGG + chr3.3:54152309-54152328 MS.gene008562:intron 20.0%
!!! TTAATTTGTATTTTGTAGCT+TGG + chr3.3:54154953-54154972 MS.gene008562:intron 20.0%
!!! TTCAAGTTATTGATATTTAG+AGG + chr3.3:54153233-54153252 MS.gene008562:intron 20.0%
!!! TTCTTTTTTTCTTAATTGCA+TGG - chr3.3:54155431-54155450 None:intergenic 20.0%
! AAAAAAAACTTAAAAGTCGG+GGG + chr3.3:54153713-54153732 MS.gene008562:intron 25.0%
! AAAATTCAGTGTTAGTAGAT+TGG - chr3.3:54154248-54154267 None:intergenic 25.0%
! AAGAATCTCATTATCAAAAG+AGG + chr3.3:54156154-54156173 MS.gene008562:CDS 25.0%
! AATAATGTCCCATATTTGTA+GGG - chr3.3:54155912-54155931 None:intergenic 25.0%
! AATTAGTCCATATTCTCAAA+TGG - chr3.3:54154757-54154776 None:intergenic 25.0%
! ACATATGCTTTCTTGTATTA+AGG + chr3.3:54152963-54152982 MS.gene008562:intron 25.0%
! ACATCCTTGATTAATATTAG+TGG - chr3.3:54155279-54155298 None:intergenic 25.0%
! AGCAATGCAATATAAGAATT+AGG - chr3.3:54151700-54151719 None:intergenic 25.0%
! CCATAATGATTTCTATGATT+GGG + chr3.3:54155493-54155512 MS.gene008562:intron 25.0%
! CTCACTTTAATCTTTAATGA+TGG + chr3.3:54153353-54153372 MS.gene008562:intron 25.0%
! GAAAAAAAACTTAAAAGTCG+GGG + chr3.3:54153712-54153731 MS.gene008562:intron 25.0%
! GAAATAAAAATGGTTGTTAG+TGG - chr3.3:54155539-54155558 None:intergenic 25.0%
! GCTGTTTGAAAAACAAAATA+GGG + chr3.3:54154017-54154036 MS.gene008562:intron 25.0%
! TAAAATTACCGAAAACCTAA+TGG + chr3.3:54153309-54153328 MS.gene008562:intron 25.0%
! TAACAACTTGAAACCTAAAA+TGG - chr3.3:54153033-54153052 None:intergenic 25.0%
! TAATTGTTGTCAAAATGAGT+TGG - chr3.3:54156130-54156149 None:intergenic 25.0%
! TCCATAATGATTTCTATGAT+TGG + chr3.3:54155492-54155511 MS.gene008562:intron 25.0%
! TTTAAAAGTTGAGATAAGGT+TGG - chr3.3:54155080-54155099 None:intergenic 25.0%
! TTTAATCCTTTGTGTTTGTT+TGG - chr3.3:54154785-54154804 None:intergenic 25.0%
!! AATTATTTAGACCTTTTGCA+TGG - chr3.3:54154464-54154483 None:intergenic 25.0%
!! ATAGTACATTTGCTAAGATA+AGG + chr3.3:54156038-54156057 MS.gene008562:CDS 25.0%
!! TGATATTTTATGTGGTTTTC+AGG + chr3.3:54155947-54155966 MS.gene008562:intron 25.0%
!! TGCTGTTTGAAAAACAAAAT+AGG + chr3.3:54154016-54154035 MS.gene008562:intron 25.0%
!! TTCTTATATTGCATTGCTTT+TGG + chr3.3:54151702-54151721 MS.gene008562:CDS 25.0%
!!! AACATTACTTGAAGTTTTGA+AGG - chr3.3:54153417-54153436 None:intergenic 25.0%
!!! ATATTATAGGCTTGTTTTGA+TGG - chr3.3:54152742-54152761 None:intergenic 25.0%
!!! TGCACTGTTTTAAAAACTTT+AGG - chr3.3:54151790-54151809 None:intergenic 25.0%
AAAAAAACTTAAAAGTCGGG+GGG + chr3.3:54153714-54153733 MS.gene008562:intron 30.0%
AAAACAAAATAGGGTTGTGA+TGG + chr3.3:54154026-54154045 MS.gene008562:intron 30.0%
AAACAAAATAGGGTTGTGAT+GGG + chr3.3:54154027-54154046 MS.gene008562:intron 30.0%
AAATCTCCTCATCATACAAA+TGG - chr3.3:54153201-54153220 None:intergenic 30.0%
AACATCTATACACACACAAA+AGG + chr3.3:54152229-54152248 MS.gene008562:intron 30.0%
AAGGATGCAATTACATATTC+AGG - chr3.3:54154657-54154676 None:intergenic 30.0%
AGTCATCAACAAATCCAATT+AGG + chr3.3:54154719-54154738 MS.gene008562:intron 30.0%
ATATGACAATCATTCATACC+CGG - chr3.3:54152474-54152493 None:intergenic 30.0%
CAATAATGTCCCATATTTGT+AGG - chr3.3:54155913-54155932 None:intergenic 30.0%
CCAACCACTAATATTAATCA+AGG + chr3.3:54155272-54155291 MS.gene008562:intron 30.0%
CCCAATCATAGAAATCATTA+TGG - chr3.3:54155496-54155515 None:intergenic 30.0%
CCTTGATTAATATTAGTGGT+TGG - chr3.3:54155275-54155294 None:intergenic 30.0%
GAGATAATAAGCCTTTAACT+GGG + chr3.3:54156296-54156315 MS.gene008562:CDS 30.0%
GATAGATATATACATGCACA+TGG + chr3.3:54153382-54153401 MS.gene008562:intron 30.0%
GCATTAGCATAGTGATAAAA+AGG + chr3.3:54153766-54153785 MS.gene008562:intron 30.0%
GTCATATTTGCACAAAATTG+TGG - chr3.3:54154401-54154420 None:intergenic 30.0%
TCAACGACAGAAATACAATT+CGG - chr3.3:54152356-54152375 None:intergenic 30.0%
TCTAATAGTGTTTATACCCA+GGG - chr3.3:54152128-54152147 None:intergenic 30.0%
TGATGCTATAAAATCTAAGG+TGG + chr3.3:54154136-54154155 MS.gene008562:CDS 30.0%
TTCTAATAGTGTTTATACCC+AGG - chr3.3:54152129-54152148 None:intergenic 30.0%
! AATCTTTTTGTCTCTTTTGG+AGG + chr3.3:54155205-54155224 MS.gene008562:intron 30.0%
! ATCTTTTTGTCTCTTTTGGA+GGG + chr3.3:54155206-54155225 MS.gene008562:intron 30.0%
! ATTTGTATTTTGTAGCTTGG+AGG + chr3.3:54154956-54154975 MS.gene008562:intron 30.0%
! GCAATTTAAAACCATGCAAA+AGG + chr3.3:54154450-54154469 MS.gene008562:intron 30.0%
! GGTAATATTGATGACCTAAT+TGG - chr3.3:54154736-54154755 None:intergenic 30.0%
! TGAGAATATGGACTAATTCT+TGG + chr3.3:54154759-54154778 MS.gene008562:intron 30.0%
! TGATAATTTCTTTTGTCCCT+GGG + chr3.3:54152109-54152128 MS.gene008562:intron 30.0%
! TTGTATTTTACTGTTCGGAT+TGG + chr3.3:54152314-54152333 MS.gene008562:intron 30.0%
! TTTTACGTGTGCATCTTTTT+TGG - chr3.3:54153294-54153313 None:intergenic 30.0%
!! AGTTTTAACAAGTGAATCAG+TGG - chr3.3:54156218-54156237 None:intergenic 30.0%
!! CTTTTTGGAAGGTAAAAGTT+GGG + chr3.3:54154981-54155000 MS.gene008562:CDS 30.0%
!! GAGCTTTAAAAGTTGAGATA+AGG - chr3.3:54155084-54155103 None:intergenic 30.0%
!! TTTTGGTCTTCCTTCTTATA+GGG + chr3.3:54151719-54151738 MS.gene008562:CDS 30.0%
!!! ATCTCAACTTTTAAAGCTCA+AGG + chr3.3:54155085-54155104 MS.gene008562:CDS 30.0%
!!! TTTACGTGTGCATCTTTTTT+GGG - chr3.3:54153293-54153312 None:intergenic 30.0%
AAATGGTTGTTAGTGGTAGT+TGG - chr3.3:54155532-54155551 None:intergenic 35.0%
AACGACTCAGATTATCTTAC+TGG + chr3.3:54154585-54154604 MS.gene008562:intron 35.0%
ACAAGGTTGTTGTACTACTT+CGG + chr3.3:54153741-54153760 MS.gene008562:intron 35.0%
ACATGTTATACACATGCACA+AGG + chr3.3:54153515-54153534 MS.gene008562:intron 35.0%
AGCTACAAAATCAGAGTCAA+AGG - chr3.3:54156260-54156279 None:intergenic 35.0%
ATATACATGCACATGGATGA+TGG + chr3.3:54153389-54153408 MS.gene008562:intron 35.0%
ATATGACCTTTCAAGCCATT+AGG - chr3.3:54153327-54153346 None:intergenic 35.0%
ATTATGAATGATTACGACCG+TGG + chr3.3:54154615-54154634 MS.gene008562:intron 35.0%
ATTTATAGATAGGGATGACC+CGG + chr3.3:54152452-54152471 MS.gene008562:intron 35.0%
CAAAAATGCATGTGCTATGT+AGG - chr3.3:54153128-54153147 None:intergenic 35.0%
CAAAAGCTAACCAATCACAA+CGG - chr3.3:54152291-54152310 None:intergenic 35.0%
CATGTTGCAAAAAACACATG+CGG + chr3.3:54154522-54154541 MS.gene008562:intron 35.0%
CATTGACCATTTGTATGATG+AGG + chr3.3:54153192-54153211 MS.gene008562:intron 35.0%
GAGCAAAAGACTATTTCAGT+TGG - chr3.3:54152720-54152739 None:intergenic 35.0%
GATGAACACATCATCTCAAT+TGG - chr3.3:54155471-54155490 None:intergenic 35.0%
GCTACATGTATGAATCTTGT+TGG - chr3.3:54155664-54155683 None:intergenic 35.0%
GGAGATAATAAGCCTTTAAC+TGG + chr3.3:54156295-54156314 MS.gene008562:CDS 35.0%
GTAGCTGCAATGATTAAGAT+GGG + chr3.3:54156274-54156293 MS.gene008562:CDS 35.0%
TATACACAATCCGTTGTGAT+TGG + chr3.3:54152278-54152297 MS.gene008562:intron 35.0%
TATGACAATCATTCATACCC+GGG - chr3.3:54152473-54152492 None:intergenic 35.0%
TATTAAGGTGTACTCTTGAG+TGG + chr3.3:54152978-54152997 MS.gene008562:intron 35.0%
TCTGATCAAGTACTCTTCAA+TGG + chr3.3:54156187-54156206 MS.gene008562:CDS 35.0%
TGGTGTAAGTGTGTAGTAAA+TGG + chr3.3:54152028-54152047 MS.gene008562:intron 35.0%
TGTAGCTGCAATGATTAAGA+TGG + chr3.3:54156273-54156292 MS.gene008562:CDS 35.0%
! AAAGGGTAGGATTACTCTTT+TGG - chr3.3:54154833-54154852 None:intergenic 35.0%
! AAGTTGAGATAAGGTTGGTT+AGG - chr3.3:54155075-54155094 None:intergenic 35.0%
! AGTCAAAGGTCTTTTCATTC+TGG - chr3.3:54156246-54156265 None:intergenic 35.0%
! CCAACTTTTACCTTCCAAAA+AGG - chr3.3:54154983-54155002 None:intergenic 35.0%
! CTGATAATTTCTTTTGTCCC+TGG + chr3.3:54152108-54152127 MS.gene008562:intron 35.0%
! CTTCTGCAACTTTTTGGATT+TGG - chr3.3:54154697-54154716 None:intergenic 35.0%
! CTTTCAAGCCATTAGGTTTT+CGG - chr3.3:54153320-54153339 None:intergenic 35.0%
! GACTTTCTTCTGCAACTTTT+TGG - chr3.3:54154703-54154722 None:intergenic 35.0%
! TTTGGGTTAAAACAGTTGAG+CGG + chr3.3:54155700-54155719 MS.gene008562:intron 35.0%
!! AAAACAGTTGAGCGGATTTT+TGG + chr3.3:54155708-54155727 MS.gene008562:intron 35.0%
!! CCTTTTTGGAAGGTAAAAGT+TGG + chr3.3:54154980-54154999 MS.gene008562:CDS 35.0%
!! CTTTTGGTCTTCCTTCTTAT+AGG + chr3.3:54151718-54151737 MS.gene008562:CDS 35.0%
AACAGAATCACGAGCAGTAA+TGG - chr3.3:54154204-54154223 None:intergenic 40.0%
AACCTAAAATGGTTACCGTC+TGG - chr3.3:54153022-54153041 None:intergenic 40.0%
AAGCCTTTAACTGGGAAACA+AGG + chr3.3:54156304-54156323 MS.gene008562:CDS 40.0%
AAGTTGGGAGAAGAGATTCA+AGG + chr3.3:54154996-54155015 MS.gene008562:CDS 40.0%
AATTACATATTCAGGCCGTC+AGG - chr3.3:54154649-54154668 None:intergenic 40.0%
AATTTCACTGCTGCAAACAC+TGG + chr3.3:54155025-54155044 MS.gene008562:CDS 40.0%
ACGACAGAAATACAATTCGG+AGG - chr3.3:54152353-54152372 None:intergenic 40.0%
AGATAAAGCAACCATGTCCT+TGG - chr3.3:54155119-54155138 None:intergenic 40.0%
AGCCTTTAACTGGGAAACAA+GGG + chr3.3:54156305-54156324 MS.gene008562:CDS 40.0%
AGGGAGACACGATTTAGTTA+TGG + chr3.3:54155225-54155244 MS.gene008562:intron 40.0%
AGTGTGTAGTAAATGGCTGT+TGG + chr3.3:54152035-54152054 MS.gene008562:intron 40.0%
ATTTCACTGCTGCAAACACT+GGG + chr3.3:54155026-54155045 MS.gene008562:CDS 40.0%
CGAAAACCTAATGGCTTGAA+AGG + chr3.3:54153318-54153337 MS.gene008562:intron 40.0%
CTGAAGAAGTCCCTATAAGA+AGG - chr3.3:54151732-54151751 None:intergenic 40.0%
GATCAAGTACTCTTCAATGG+TGG + chr3.3:54156190-54156209 MS.gene008562:CDS 40.0%
GATGACACTTCATCCTTCAA+AGG + chr3.3:54154062-54154081 MS.gene008562:CDS 40.0%
GCAGACTGTTGTTAAAACAG+CGG + chr3.3:54151807-54151826 MS.gene008562:CDS 40.0%
GGGAGATTAGGAAGAATTGT+AGG + chr3.3:54156326-54156345 MS.gene008562:CDS 40.0%
GTTGCCAAAGAAAATCGCAT+CGG + chr3.3:54151829-54151848 MS.gene008562:CDS 40.0%
TCATGACACAGGAAAAACTG+TGG + chr3.3:54152008-54152027 MS.gene008562:intron 40.0%
TCTTGGCCAAACAAACACAA+AGG + chr3.3:54154776-54154795 MS.gene008562:intron 40.0%
TGCAGCTCCTAACAACAATT+CGG + chr3.3:54154094-54154113 MS.gene008562:CDS 40.0%
TGTTGCTGTCGTTGTATATG+TGG - chr3.3:54156015-54156034 None:intergenic 40.0%
TTACATCAACAAAGCAGTCG+TGG - chr3.3:54151879-54151898 None:intergenic 40.0%
TTTATAGATAGGGATGACCC+GGG + chr3.3:54152453-54152472 MS.gene008562:intron 40.0%
TTTCAGGAGCTCACACAATA+GGG + chr3.3:54155963-54155982 MS.gene008562:intron 40.0%
! AAGGACATGGTTGCTTTATC+TGG + chr3.3:54155118-54155137 MS.gene008562:CDS 40.0%
! AGGTTGGTTAGGTTAGATGT+AGG - chr3.3:54155064-54155083 None:intergenic 40.0%
! TAATTTGTGTAGGGGAGATG+AGG - chr3.3:54153660-54153679 None:intergenic 40.0%
! TGCAGTTTTCTCTCCTTTGA+AGG - chr3.3:54154078-54154097 None:intergenic 40.0%
!! TGTTCGGATTGGTTTGTTCT+AGG + chr3.3:54152325-54152344 MS.gene008562:intron 40.0%
!! TTTTCAGGAGCTCACACAAT+AGG + chr3.3:54155962-54155981 MS.gene008562:intron 40.0%
!!! TGTGCATCTTTTTTGGGACA+AGG - chr3.3:54153287-54153306 None:intergenic 40.0%
AAAAGTCGGGGGGATATACA+AGG + chr3.3:54153724-54153743 MS.gene008562:intron 45.0%
AAGAACTGCCCTAGAACAAG+TGG + chr3.3:54156064-54156083 MS.gene008562:CDS 45.0%
GCAAGGTGTACAAGTTTCAG+AGG + chr3.3:54155989-54156008 MS.gene008562:CDS 45.0%
GCCTTTAACTGGGAAACAAG+GGG + chr3.3:54156306-54156325 MS.gene008562:CDS 45.0%
GTTAGGTTAGATGTAGGAGC+TGG - chr3.3:54155058-54155077 None:intergenic 45.0%
TTTCACTGCTGCAAACACTG+GGG + chr3.3:54155027-54155046 MS.gene008562:CDS 45.0%
! CCTAACAACAATTCGGTGAG+AGG + chr3.3:54154101-54154120 MS.gene008562:CDS 45.0%
! CCTCTCACCGAATTGTTGTT+AGG - chr3.3:54154104-54154123 None:intergenic 45.0%
! GGTCTCATGTGCTGATATAG+TGG + chr3.3:54154178-54154197 MS.gene008562:CDS 45.0%
! TCCCCTTGTTTCCCAGTTAA+AGG - chr3.3:54156310-54156329 None:intergenic 45.0%
! TGCTCCGATGCGATTTTCTT+TGG - chr3.3:54151836-54151855 None:intergenic 45.0%
! TGTAGCTTGGAGGTCCTTTT+TGG + chr3.3:54154966-54154985 MS.gene008562:intron 45.0%
! TTTGACGTGTGCAGTTGGTA+TGG - chr3.3:54153264-54153283 None:intergenic 45.0%
AAGGTGGAAGCAATATGCCC+CGG + chr3.3:54154152-54154171 MS.gene008562:CDS 50.0%
AGCTCAAGGACTTTCTGCCA+AGG + chr3.3:54155099-54155118 MS.gene008562:CDS 50.0%
AGGACTTTCTGCCAAGGACA+TGG + chr3.3:54155105-54155124 MS.gene008562:CDS 50.0%
AGGTGTACTCTTGAGTGGTG+TGG + chr3.3:54152983-54153002 MS.gene008562:intron 50.0%
AGTCGTGGAAGAAGAGACGA+AGG - chr3.3:54151864-54151883 None:intergenic 50.0%
AGTGGTGTGGTGTGTGACTA+TGG + chr3.3:54152996-54153015 MS.gene008562:intron 50.0%
ATCAGCACATGAGACCACAC+CGG - chr3.3:54154174-54154193 None:intergenic 50.0%
CAAGGTTTGACGTGTGCAGT+TGG - chr3.3:54153269-54153288 None:intergenic 50.0%
CTCACACAATAGGGAGAGCA+AGG + chr3.3:54155972-54155991 MS.gene008562:CDS 50.0%
CTCCTGAGCCACTTGTTCTA+GGG - chr3.3:54156075-54156094 None:intergenic 50.0%
CTGGGAAACAAGGGGAGATT+AGG + chr3.3:54156314-54156333 MS.gene008562:CDS 50.0%
TCTCCTGAGCCACTTGTTCT+AGG - chr3.3:54156076-54156095 None:intergenic 50.0%
TGCATCCTTGAGTCGTTGCA+GGG + chr3.3:54154668-54154687 MS.gene008562:intron 50.0%
TTGCATCCTTGAGTCGTTGC+AGG + chr3.3:54154667-54154686 MS.gene008562:intron 50.0%
! ACCGTGGATTTGAGACCTGA+CGG + chr3.3:54154631-54154650 MS.gene008562:intron 50.0%
! GCTTGGAGGTCCTTTTTGGA+AGG + chr3.3:54154970-54154989 MS.gene008562:intron 50.0%
! GGCCAGACGGTAACCATTTT+AGG + chr3.3:54153017-54153036 MS.gene008562:intron 50.0%
GCCGTCAGGTCTCAAATCCA+CGG - chr3.3:54154635-54154654 None:intergenic 55.0%
GGATTCCCTGCAACGACTCA+AGG - chr3.3:54154676-54154695 None:intergenic 55.0%
GGTGTGTGACTATGGCCAGA+CGG + chr3.3:54153004-54153023 MS.gene008562:intron 55.0%
TCAGCACATGAGACCACACC+GGG - chr3.3:54154173-54154192 None:intergenic 55.0%
TGCCCTAGAACAAGTGGCTC+AGG + chr3.3:54156070-54156089 MS.gene008562:CDS 55.0%
CAGCACATGAGACCACACCG+GGG - chr3.3:54154172-54154191 None:intergenic 60.0%
GGAAGCAATATGCCCCGGTG+TGG + chr3.3:54154157-54154176 MS.gene008562:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 54151685 54156360 54151685 ID=MS.gene008562
chr3.3 mRNA 54151685 54156360 54151685 ID=MS.gene008562.t1;Parent=MS.gene008562
chr3.3 exon 54151685 54151894 54151685 ID=MS.gene008562.t1.exon1;Parent=MS.gene008562.t1
chr3.3 CDS 54151685 54151894 54151685 ID=cds.MS.gene008562.t1;Parent=MS.gene008562.t1
chr3.3 exon 54154038 54154229 54154038 ID=MS.gene008562.t1.exon2;Parent=MS.gene008562.t1
chr3.3 CDS 54154038 54154229 54154038 ID=cds.MS.gene008562.t1;Parent=MS.gene008562.t1
chr3.3 exon 54154971 54155139 54154971 ID=MS.gene008562.t1.exon3;Parent=MS.gene008562.t1
chr3.3 CDS 54154971 54155139 54154971 ID=cds.MS.gene008562.t1;Parent=MS.gene008562.t1
chr3.3 exon 54155969 54156360 54155969 ID=MS.gene008562.t1.exon4;Parent=MS.gene008562.t1
chr3.3 CDS 54155969 54156360 54155969 ID=cds.MS.gene008562.t1;Parent=MS.gene008562.t1
Gene Sequence

>MS.gene008562

ATGGCACATTCTCCTAATTCTTATATTGCATTGCTTTTGGTCTTCCTTCTTATAGGGACTTCTTCAGCTCAACTTTCTGAGAACTTTTATTCTAAGAAATGTCCTAAAGTTTTTAAAACAGTGCAGACTGTTGTTAAAACAGCGGTTGCCAAAGAAAATCGCATCGGAGCATCTCTCCTTCGTCTCTTCTTCCACGACTGCTTTGTTGATGTAACGTACTTGCTATTCTATCTATATATGATCTTATTTTTAGGTTTTATTTTTATCTTTCAATGGTAGATTGATTTATTGAACTAACTTTTGCATGTCAATATATTTTTTATTCATGACACAGGAAAAACTGTGGTGTAAGTGTGTAGTAAATGGCTGTTGGATTTTCCAATAAGCAAAAAAATAACGATTTTCACTTCTATACCCACAAAACTGATAATTTCTTTTGTCCCTGGGTATAAACACTATTAGAAAGATTGCATTATTATTATTTTTTTCAAATTTAACCCTAATTAATTGTTTATTTTCTTGAAATATGAAAAATCAATATTAAAACATCTATACACACACAAAAGGTAATTTAATAATATTTATACACAAATTATACACAATCCGTTGTGATTGGTTAGCTTTTGTTTTTGTATTTTACTGTTCGGATTGGTTTGTTCTAGGAACCTCCGAATTGTATTTCTGTCGTTGACTATTTCGTGTTTGTGTGTGCGTATATATATTACACTATCAATTTTTCTTAATATATGTGAACAAATACAATGAAAATTTATAGATAGGGATGACCCGGGTATGAATGATTGTCATATAATTTTTTTTAGTAAATAGACAATTTTTTTGCTTCTATAGTAAACTGACATTTTATTCTTTGAAATTTGAAGGTTCTAAAATTTACGAAATAGCGATTAGTCACTTAACTAATAGAAAAATATCAATTAATTTAGCACCTCCAATCAAAATATTTATTTACTAAACATTTTTTTTTAGCAATATTTACTAAACATATATCATGATCAATGAAAGACACACATGCCAACTGAAATAGTCTTTTGCTCCATCAAAACAAGCCTATAATATTTAAAATGGTTGTACAAAGATTGAGAAAAATGATTCAATTGATGATAGTTTTTAATTTAAGGGACTAAATGCTATTTCACAAATTCGGAAAACTAAATTAATCGATCTTTACAATTTTAAAAGACTATATTAATTTACAATTTTAAAAGACTATATTAAATGCTTTTTTTGCTAAAATCTCACAAAAGACAAATATACATAACATATGCTTTCTTGTATTAAGGTGTACTCTTGAGTGGTGTGGTGTGTGACTATGGCCAGACGGTAACCATTTTAGGTTTCAAGTTGTTATCTTGTTGTACAAAAAATATATCTATAATTTTCATCTTTAACAATGAAAACGTTTGTGAGTATAAAATAGTACCTACATAGCACATGCATTTTTGTTTTATTATCTTGTTGTATATGTATATATATGCTATGCTATGATCATTGACCATTTGTATGATGAGGAGATTTTTTCAATCGCTTTTCAAGTTATTGATATTTAGAGGATTTGCCATACCAACTGCACACGTCAAACCTTGTCCCAAAAAAGATGCACACGTAAAATTACCGAAAACCTAATGGCTTGAAAGGTCATATATATAACTCACTTTAATCTTTAATGATGGTATATAGATAGATATATACATGCACATGGATGATGGATCCTTCAAAACTTCAAGTAATGTTTAAATTTGAACCTTTTTGTTTTGGTTACTTTTTTTGTTACTTTTTTTTTTGTTACATTTGAGCCTTGTTTTGATTATTACATGTTATACACATGCACAAGGATATACTACCATAAGATGATATGAAAAATTTCACTATTTAAATATTCATTTTTCATCTTTAATAAATAGATATGATTAATTAATTAATTTTTTCCTTAAAAAAATAGTTAATTCATTTTCCTCATCTCCCCTACACAAATTATGTTATTAAATTATAAGTCCATACAAGAAAAAGAAAAAAAACTTAAAAGTCGGGGGGATATACAAGGTTGTTGTACTACTTCGGATGCATTAGCATAGTGATAAAAAGGTCGACGTTTCGAACGTCGCTCTCAACATAATATTAACAATAATAATAGTTCTCGTTTTAAAAGAAAACACTTGTGTTCGAACATCACTCTCAACATAATATTAACAATACTAATAGTTCTCGTTTCAAAAGAGAACACTTACAACACTTCAAAATATTTTCAATTTTTAATCTAATTACTTATTGTAATGCTTCTCTATAATATTTTACTAGTTACATAAATTATCATGCTGTTTGAAAAACAAAATAGGGTTGTGATGGGTCAATACTACTTGATGACACTTCATCCTTCAAAGGAGAGAAAACTGCAGCTCCTAACAACAATTCGGTGAGAGGTTATGAAGTAATTGATGCTATAAAATCTAAGGTGGAAGCAATATGCCCCGGTGTGGTCTCATGTGCTGATATAGTGGCCATTACTGCTCGTGATTCTGTTGTGATTGTAAGTACTTCAAAACCAATCTACTAACACTGAATTTTAGCAACTTTTTTGTCACTAATCTTTAAACATAATTGACAATTTTTAGGGTTAGATTATATTTTTAGTACTTTAACTTGATTTTCAGTTTCAATAAGTCTTTTTTTGTGTTAATACATCAGCATCATATTTCCACAATTTTGTGCAAATATGACATATGCTATTGCAATTGTGATTGCAGACTGCAATTTAAAACCATGCAAAAGGTCTAAATAATTAACGAAGAGATATTCAAATTTTATATAAGTCTAATATGCATGTTGCAAAAAACACATGCGGTTGCTAGTAATTTTACTTCTTAGTCGTTAATCGAAGATTGAACGACTCAGATTATCTTACTGGCAAACTAATTATGAATGATTACGACCGTGGATTTGAGACCTGACGGCCTGAATATGTAATTGCATCCTTGAGTCGTTGCAGGGAATCCAAATCCAAAAAGTTGCAGAAGAAAGTCATCAACAAATCCAATTAGGTCATCAATATTACCATTTGAGAATATGGACTAATTCTTGGCCAAACAAACACAAAGGATTAAATTAAATTTAAAATGAAATTAAATGACCAAAAGAGTAATCCTACCCTTTTTATAAAATAATGGTCCATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTGTTTTCTGATAATATATTTAATTTGTATTTTGTAGCTTGGAGGTCCTTTTTGGAAGGTAAAAGTTGGGAGAAGAGATTCAAGGACAGCTAATTTCACTGCTGCAAACACTGGGGTGATTCCAGCTCCTACATCTAACCTAACCAACCTTATCTCAACTTTTAAAGCTCAAGGACTTTCTGCCAAGGACATGGTTGCTTTATCTGGTAATATTTAACTTTTTGATTTCTCATTTTTTTTCTTCCATTATTTGAAAATTAAAACAATTATTAATCTTTTTGTCTCTTTTGGAGGGAGACACGATTTAGTTATGGTTTTGCATGTAACAACTGTTTTAACCAACCACTAATATTAATCAAGGATGTGACATTTAAACAACTAAATAGTTTATTTTATTTTTGAAGTAAAACAATAACTACATAATTGTTATACGGCGTGAAACGTCTATTTTTAAGTCTAAAGTCAGATCATGATCATAAATAAATAGCTTAAAGCCATGCAATTAAGAAAAAAAGAAATGAAAATTGTGTTTAACCAATTGAGATGATGTGTTCATCTTCCATAATGATTTCTATGATTGGGAAATTAAAGTAAACCAACTACCACTAACAACCATTTTTATTTCAAATAAATACTAGAAATATAACTAACAATTTTTCAACAAAAAAAAAAAGTAAAAGAAAAAATAACTAGCAAGGAATTGTATAAATAAATAAATAAATATTAGCCAACAAGATTCATACATGTAGCCAAGTGTCTGTAATTTTTTGGGTTAAAACAGTTGAGCGGATTTTTGGTTTACCCTATGTGAAAAAACATATTTCAACTGTCATTTGAAAATTATATGAATCTTTGACGGTGAACACAATAGTATCCATGTAGATAAAACAGTTTTATTTTAAAGAAACGAATAAAAAAACATTAAGAGTATTATATATTTTTATTGATAAGATGATGAAGAAGAAGAAAAAAAAACCCTACAAATATGGGACATTATTGAATGAGTCTATTCATGATATTTTATGTGGTTTTCAGGAGCTCACACAATAGGGAGAGCAAGGTGTACAAGTTTCAGAGGCCACATATACAACGACAGCAACATTGATAGTACATTTGCTAAGATAAGGCAAAAGAACTGCCCTAGAACAAGTGGCTCAGGAGACAACAATCTAGCAAATCTAGACTTGAGAACTCCAACTCATTTTGACAACAATTACTACAAGAATCTCATTATCAAAAGAGGACTACTTCATTCTGATCAAGTACTCTTCAATGGTGGAACCACTGATTCACTTGTTAAAACTTATAGCCAGAATGAAAAGACCTTTGACTCTGATTTTGTAGCTGCAATGATTAAGATGGGAGATAATAAGCCTTTAACTGGGAAACAAGGGGAGATTAGGAAGAATTGTAGGAGCTTGAATTAG
Protein sequence

>MS.gene008562.t1

MAHSPNSYIALLLVFLLIGTSSAQLSENFYSKKCPKVFKTVQTVVKTAVAKENRIGASLLRLFFHDCFVDGCDGSILLDDTSSFKGEKTAAPNNNSVRGYEVIDAIKSKVEAICPGVVSCADIVAITARDSVVILGGPFWKVKVGRRDSRTANFTAANTGVIPAPTSNLTNLISTFKAQGLSAKDMVALSGAHTIGRARCTSFRGHIYNDSNIDSTFAKIRQKNCPRTSGSGDNNLANLDLRTPTHFDNNYYKNLIIKRGLLHSDQVLFNGGTTDSLVKTYSQNEKTFDSDFVAAMIKMGDNKPLTGKQGEIRKNCRSLN