AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26287

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26287.t1 MTR_5g074970 96.933 326 9 1 1 325 1 326 0.0 642
MS.gene26287.t1 MTR_3g466200 71.698 318 88 2 9 325 4 320 2.67e-168 471
MS.gene26287.t1 MTR_3g094650 65.432 324 106 5 3 325 4 322 3.68e-149 422
MS.gene26287.t1 MTR_5g083860 64.444 315 109 3 12 325 13 325 1.44e-145 413
MS.gene26287.t1 MTR_3g094670 63.722 317 111 4 10 325 9 322 7.26e-137 391
MS.gene26287.t1 MTR_4g029170 61.610 323 119 3 5 325 2 321 6.47e-135 386
MS.gene26287.t1 MTR_3g094630 63.666 311 110 3 16 325 14 322 3.32e-133 382
MS.gene26287.t1 MTR_4g029200 59.667 300 116 3 27 325 43 338 1.53e-129 373
MS.gene26287.t1 MTR_3g072190 59.248 319 118 5 15 325 4 318 1.68e-127 367
MS.gene26287.t1 MTR_4g029180 63.390 295 103 3 33 325 30 321 2.02e-126 364
MS.gene26287.t1 MTR_4g029190 58.766 308 119 5 22 325 37 340 4.08e-126 364
MS.gene26287.t1 MTR_7g072510 58.013 312 126 3 15 325 5 312 4.76e-126 363
MS.gene26287.t1 MTR_2g084080 58.280 314 124 4 15 325 8 317 6.75e-125 360
MS.gene26287.t1 MTR_7g072480 60.000 310 119 3 17 325 11 316 3.21e-124 358
MS.gene26287.t1 MTR_4g083710 57.006 314 131 4 15 325 12 324 1.26e-123 357
MS.gene26287.t1 MTR_5g074860 58.182 330 126 8 1 324 1 324 3.92e-123 356
MS.gene26287.t1 MTR_2g084110 57.325 314 127 4 15 325 8 317 1.87e-121 352
MS.gene26287.t1 MTR_5g074740 56.522 322 129 8 10 325 5 321 1.09e-120 350
MS.gene26287.t1 MTR_3g466180 58.462 325 124 5 7 325 4 323 1.15e-120 350
MS.gene26287.t1 MTR_5g074760 55.901 322 131 8 10 325 5 321 1.44e-119 347
MS.gene26287.t1 MTR_4g074995 55.732 314 122 5 15 325 9 308 1.83e-119 346
MS.gene26287.t1 MTR_3g467600 55.937 320 131 7 12 325 9 324 6.41e-119 345
MS.gene26287.t1 MTR_2g084090 56.230 313 132 4 15 325 9 318 2.09e-118 344
MS.gene26287.t1 MTR_5g074710 55.215 326 133 9 6 325 3 321 5.20e-117 340
MS.gene26287.t1 MTR_1g115900 53.495 329 141 6 1 325 1 321 1.09e-116 340
MS.gene26287.t1 MTR_2g084020 55.625 320 135 5 9 325 3 318 1.66e-116 339
MS.gene26287.t1 MTR_7g026990 55.152 330 135 8 1 325 1 322 1.45e-115 337
MS.gene26287.t1 MTR_2g084010 56.766 303 125 4 25 325 20 318 1.79e-114 334
MS.gene26287.t1 MTR_4g074990 52.885 312 131 3 15 325 9 305 5.57e-113 330
MS.gene26287.t1 MTR_2g084000 53.943 317 138 5 13 325 7 319 2.89e-111 326
MS.gene26287.t1 MTR_3g072190 62.205 254 91 3 73 325 2 251 5.61e-105 307
MS.gene26287.t1 MTR_5g021060 53.268 306 128 5 30 325 30 330 7.60e-105 310
MS.gene26287.t1 MTR_5g017850 50.467 321 147 4 13 325 10 326 1.10e-104 309
MS.gene26287.t1 MTR_5g017860 50.156 321 148 4 13 325 10 326 3.13e-104 308
MS.gene26287.t1 MTR_1g054205 49.533 321 147 6 16 325 10 326 8.39e-103 305
MS.gene26287.t1 MTR_8g076820 51.792 307 135 4 28 325 28 330 2.34e-102 304
MS.gene26287.t1 MTR_4g125940 51.227 326 140 7 13 325 10 329 6.19e-101 300
MS.gene26287.t1 MTR_7g093370 47.988 323 151 7 15 325 54 371 2.53e-100 300
MS.gene26287.t1 MTR_2g029730 47.962 319 152 5 17 325 12 326 3.16e-99 296
MS.gene26287.t1 MTR_4g074980 50.836 299 119 5 28 325 23 294 9.12e-99 293
MS.gene26287.t1 MTR_2g040000 50.915 328 139 7 14 325 10 331 1.77e-98 294
MS.gene26287.t1 MTR_2g029560 47.095 327 159 6 9 325 3 325 5.01e-98 293
MS.gene26287.t1 MTR_1g022970 50.980 306 136 4 30 325 46 347 2.01e-97 291
MS.gene26287.t1 MTR_2g028980 48.503 334 157 6 3 325 1 330 2.95e-97 291
MS.gene26287.t1 MTR_5g049280 47.447 333 149 9 13 325 11 337 5.68e-97 290
MS.gene26287.t1 MTR_4g122640 51.148 305 138 5 28 325 36 336 1.82e-96 289
MS.gene26287.t1 MTR_2g029800 48.758 322 151 5 14 325 13 330 1.16e-95 287
MS.gene26287.t1 MTR_2g029750 49.096 332 155 5 4 325 3 330 1.24e-95 287
MS.gene26287.t1 MTR_2g029830 49.518 311 143 5 25 325 23 329 9.45e-94 283
MS.gene26287.t1 MTR_2g029820 47.720 329 156 6 8 325 7 330 1.02e-93 283
MS.gene26287.t1 MTR_2g029815 46.914 324 157 6 13 325 11 330 2.60e-93 281
MS.gene26287.t1 MTR_5g074860 49.848 329 114 9 1 323 1 284 1.21e-92 277
MS.gene26287.t1 MTR_2g029740 47.904 334 159 7 3 325 1 330 1.31e-92 280
MS.gene26287.t1 MTR_2g029860 47.077 325 155 7 13 325 11 330 8.21e-92 278
MS.gene26287.t1 MTR_4g125940 53.047 279 113 6 59 325 2 274 6.01e-91 273
MS.gene26287.t1 MTR_5g014100 49.518 311 137 6 30 325 26 331 3.34e-90 273
MS.gene26287.t1 MTR_4g074980 55.172 232 102 2 28 258 23 253 9.79e-90 269
MS.gene26287.t1 MTR_4g030890 46.945 311 150 6 23 325 93 396 6.89e-89 272
MS.gene26287.t1 MTR_2g029850 46.605 324 155 6 14 325 13 330 1.00e-88 270
MS.gene26287.t1 MTR_2g029910 45.342 322 163 5 14 325 14 332 2.52e-88 269
MS.gene26287.t1 MTR_4g031140 46.405 306 149 6 28 325 26 324 3.18e-88 268
MS.gene26287.t1 MTR_0155s0040 43.750 320 169 6 8 325 5 315 5.11e-84 256
MS.gene26287.t1 MTR_1g077000 41.667 336 176 7 1 325 1 327 3.86e-83 254
MS.gene26287.t1 MTR_2g088770 44.688 320 161 8 16 325 12 325 5.72e-83 254
MS.gene26287.t1 MTR_4g046713 41.486 323 175 6 12 325 9 326 6.28e-82 251
MS.gene26287.t1 MTR_1g038680 44.884 303 153 6 34 325 33 332 2.98e-79 244
MS.gene26287.t1 MTR_3g092990 41.667 324 178 4 10 325 6 326 3.13e-78 242
MS.gene26287.t1 MTR_7g029030 42.462 325 174 8 7 325 3 320 3.72e-76 236
MS.gene26287.t1 MTR_1g086320 40.476 336 186 6 1 325 1 333 1.21e-75 236
MS.gene26287.t1 MTR_2g008710 42.154 325 165 9 15 325 10 325 1.86e-75 235
MS.gene26287.t1 MTR_1g101830 39.009 323 181 7 11 325 8 322 8.16e-75 233
MS.gene26287.t1 MTR_2g029830 49.231 260 118 5 76 325 6 261 1.50e-74 231
MS.gene26287.t1 MTR_1g025980 42.902 317 162 8 15 321 7 314 4.04e-74 231
MS.gene26287.t1 MTR_6g027440 40.064 312 181 4 16 325 7 314 3.08e-73 229
MS.gene26287.t1 MTR_6g043280 43.377 302 155 7 30 325 41 332 1.00e-72 228
MS.gene26287.t1 MTR_5g022870 41.325 317 168 6 17 325 10 316 1.02e-72 228
MS.gene26287.t1 MTR_4g087965 42.651 347 168 9 1 321 1 342 1.03e-72 228
MS.gene26287.t1 MTR_1g086490 39.701 335 183 6 8 325 8 340 6.83e-72 226
MS.gene26287.t1 MTR_4g114210 41.479 311 160 7 28 325 19 320 9.25e-72 225
MS.gene26287.t1 MTR_8g075100 40.446 314 159 7 25 325 21 319 5.87e-70 221
MS.gene26287.t1 MTR_2g437770 40.328 305 160 7 30 325 50 341 6.12e-70 221
MS.gene26287.t1 MTR_4g133800 40.333 300 158 7 35 325 46 333 9.68e-70 220
MS.gene26287.t1 MTR_7g107520 39.812 319 175 8 15 325 11 320 2.98e-68 216
MS.gene26287.t1 MTR_7g086820 39.274 303 169 5 26 322 16 309 4.81e-68 215
MS.gene26287.t1 MTR_3g092990 39.506 324 174 5 10 325 6 315 1.13e-66 212
MS.gene26287.t1 MTR_5g074700 53.097 226 87 8 103 325 5 214 3.10e-66 207
MS.gene26287.t1 MTR_7g086870 38.255 298 174 5 30 325 22 311 4.82e-65 207
MS.gene26287.t1 MTR_1g090760 37.160 331 189 8 11 325 3 330 9.98e-65 207
MS.gene26287.t1 MTR_3g072210 58.947 190 71 6 139 325 53 238 1.26e-64 204
MS.gene26287.t1 MTR_6g043460 37.651 332 188 8 1 321 1 324 1.77e-64 207
MS.gene26287.t1 MTR_0286s0010 38.272 324 179 9 17 325 17 334 1.17e-63 205
MS.gene26287.t1 MTR_6g008075 38.272 324 179 9 17 325 17 334 1.17e-63 205
MS.gene26287.t1 MTR_5g016010 38.318 321 177 9 16 321 11 325 5.90e-63 203
MS.gene26287.t1 MTR_2g008160 40.312 320 161 9 23 325 17 323 6.64e-63 202
MS.gene26287.t1 MTR_4g095450 40.566 318 173 10 13 321 10 320 1.08e-62 202
MS.gene26287.t1 MTR_8g062780 38.390 323 185 6 13 325 6 324 1.39e-62 202
MS.gene26287.t1 MTR_2g077990 38.739 333 165 10 28 323 74 404 2.43e-62 204
MS.gene26287.t1 MTR_4g127670 41.479 311 158 11 29 325 23 323 7.87e-62 200
MS.gene26287.t1 MTR_2g078610 37.838 333 168 9 28 323 74 404 1.15e-61 202
MS.gene26287.t1 MTR_2g067440 36.747 332 172 8 28 324 58 386 1.40e-61 201
MS.gene26287.t1 MTR_6g043240 35.965 342 191 8 1 325 1 331 5.40e-61 198
MS.gene26287.t1 MTR_5g033470 36.156 307 185 4 29 325 72 377 5.69e-61 199
MS.gene26287.t1 MTR_3g105790 35.583 326 190 6 11 325 6 322 7.96e-60 194
MS.gene26287.t1 MTR_1g009750 36.858 331 190 7 9 325 3 328 3.63e-59 193
MS.gene26287.t1 MTR_2g099175 37.134 307 177 6 29 325 35 335 8.49e-59 192
MS.gene26287.t1 MTR_2g008730 44.715 246 118 6 92 325 62 301 2.22e-58 190
MS.gene26287.t1 MTR_4g132110 35.202 321 201 5 10 325 10 328 1.38e-57 189
MS.gene26287.t1 MTR_2g078280 38.318 321 159 10 28 311 74 392 3.38e-57 190
MS.gene26287.t1 MTR_4g132490 34.385 317 197 5 16 325 15 327 1.71e-56 186
MS.gene26287.t1 MTR_1g066380 35.430 302 190 4 27 325 24 323 4.17e-56 185
MS.gene26287.t1 MTR_1g066640 36.545 301 186 4 28 325 25 323 4.64e-56 185
MS.gene26287.t1 MTR_1g066680 35.880 301 187 5 28 325 25 322 2.97e-55 183
MS.gene26287.t1 MTR_4g132110 34.663 326 201 6 10 325 10 333 3.26e-55 183
MS.gene26287.t1 MTR_0147s0010 34.375 320 170 7 30 324 77 381 5.24e-55 184
MS.gene26287.t1 MTR_2g067450 37.013 308 176 8 28 324 9 309 7.21e-55 181
MS.gene26287.t1 MTR_1g066710 35.548 301 189 4 28 325 25 323 1.62e-54 181
MS.gene26287.t1 MTR_7g072490 45.082 244 75 3 76 318 2 187 1.63e-54 177
MS.gene26287.t1 MTR_2g008160 38.065 310 139 9 23 321 17 284 6.18e-52 173
MS.gene26287.t1 MTR_1g009750 34.043 329 185 8 9 325 3 311 1.12e-48 165
MS.gene26287.t1 MTR_1g066380 35.686 255 159 4 74 325 3 255 1.39e-45 155
MS.gene26287.t1 MTR_2g008160 45.506 178 92 3 23 200 17 189 1.44e-44 151
MS.gene26287.t1 MTR_3g072260 56.489 131 51 1 15 139 5 135 1.08e-43 147
MS.gene26287.t1 MTR_3g105790 37.500 240 134 5 97 325 12 246 1.93e-40 142
MS.gene26287.t1 MTR_2g029880 39.691 194 93 5 142 325 9 188 1.30e-36 131
MS.gene26287.t1 MTR_2g077980 31.273 275 143 10 92 323 11 282 2.56e-26 105
MS.gene26287.t1 MTR_5g074770 54.255 94 39 3 234 324 16 108 1.75e-25 98.6
MS.gene26287.t1 MTR_5g058120 35.256 156 93 3 167 321 7 155 2.56e-24 99.8
MS.gene26287.t1 MTR_4g114220 56.098 82 26 2 56 137 29 100 3.02e-23 94.0
MS.gene26287.t1 MTR_6g048160 65.714 70 20 2 69 138 22 87 6.23e-23 91.3
MS.gene26287.t1 MTR_2g078560 31.390 223 116 8 135 321 95 316 3.14e-22 95.5
MS.gene26287.t1 MTR_4g031040 36.471 170 67 5 91 260 3 131 3.46e-22 90.9
MS.gene26287.t1 MTR_3g462850 39.726 146 68 7 195 325 9 149 1.97e-20 86.7
MS.gene26287.t1 MTR_1g089005 37.879 132 75 2 16 141 1 131 2.00e-19 84.0
MS.gene26287.t1 MTR_7g086790 40.496 121 67 3 77 197 17 132 2.95e-19 84.7
MS.gene26287.t1 MTR_3g107060 27.863 262 113 7 64 306 108 312 4.22e-19 86.7
MS.gene26287.t1 MTR_1g098320 36.036 111 70 1 216 325 14 124 2.77e-17 77.8
MS.gene26287.t1 MTR_3g086710 55.556 54 24 0 22 75 11 64 2.44e-13 65.5
MS.gene26287.t1 MTR_2g029930 35.870 92 34 2 28 108 17 94 4.31e-13 65.1
MS.gene26287.t1 MTR_7g086810 30.328 122 59 1 26 147 2 97 2.74e-12 65.9
MS.gene26287.t1 MTR_4g012865 39.706 68 41 0 30 97 77 144 5.79e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26287.t1 AT5G05340 65.886 299 99 3 28 325 28 324 5.91e-141 401
MS.gene26287.t1 AT5G58390 65.705 312 105 2 15 325 6 316 6.00e-141 401
MS.gene26287.t1 AT5G58400 62.420 314 116 2 13 325 13 325 7.98e-140 399
MS.gene26287.t1 AT1G14550 55.836 317 131 5 15 325 8 321 7.39e-119 345
MS.gene26287.t1 AT1G14540 50.784 319 150 5 10 325 1 315 4.67e-106 313
MS.gene26287.t1 AT5G06720 49.848 329 144 6 14 325 9 333 6.99e-105 310
MS.gene26287.t1 AT5G06730 47.633 338 160 7 1 325 1 334 2.65e-104 310
MS.gene26287.t1 AT4G36430 51.961 306 134 5 29 325 29 330 1.16e-103 307
MS.gene26287.t1 AT3G50990 50.968 310 139 5 25 325 36 341 1.14e-102 305
MS.gene26287.t1 AT1G44970 50.000 312 142 4 24 325 39 346 4.74e-102 303
MS.gene26287.t1 AT5G66390 49.836 305 140 4 30 325 33 333 1.59e-101 302
MS.gene26287.t1 AT2G18150 51.827 301 132 5 34 325 40 336 9.16e-101 300
MS.gene26287.t1 AT2G18140 50.331 302 137 5 33 325 38 335 3.78e-96 288
MS.gene26287.t1 AT4G16270 52.145 303 126 7 34 325 54 348 8.94e-96 288
MS.gene26287.t1 AT1G49570 50.658 304 137 5 28 321 46 346 1.57e-93 282
MS.gene26287.t1 AT4G08770 47.799 318 144 7 23 325 17 327 5.94e-93 280
MS.gene26287.t1 AT5G19890 47.164 335 154 8 4 325 3 327 6.30e-93 280
MS.gene26287.t1 AT1G68850 43.713 334 162 7 16 325 4 335 3.20e-92 278
MS.gene26287.t1 AT5G19880 47.077 325 154 7 15 325 9 329 7.92e-92 277
MS.gene26287.t1 AT2G38390 47.742 310 145 7 28 325 29 333 1.13e-91 277
MS.gene26287.t1 AT4G08780 46.855 318 147 7 23 325 17 327 2.18e-91 276
MS.gene26287.t1 AT2G35380 45.536 336 171 4 1 325 1 335 2.33e-91 276
MS.gene26287.t1 AT2G38380 47.419 310 146 7 28 325 29 333 9.82e-90 272
MS.gene26287.t1 AT3G32980 46.417 321 150 8 21 325 20 334 9.99e-90 272
MS.gene26287.t1 AT3G49110 47.516 322 145 8 21 325 22 336 1.07e-89 272
MS.gene26287.t1 AT3G49120 46.497 314 148 7 26 325 28 335 1.22e-87 267
MS.gene26287.t1 AT3G01190 43.750 320 159 10 17 325 12 321 1.80e-82 253
MS.gene26287.t1 AT2G22420 43.125 320 166 6 15 325 7 319 1.07e-81 251
MS.gene26287.t1 AT4G33420 43.168 322 170 7 8 325 13 325 2.43e-80 247
MS.gene26287.t1 AT4G33420 43.168 322 170 7 8 325 60 372 1.29e-79 247
MS.gene26287.t1 AT1G05260 43.125 320 164 9 17 325 13 325 2.42e-78 242
MS.gene26287.t1 AT1G71695 43.854 301 159 5 30 325 44 339 3.16e-78 243
MS.gene26287.t1 AT3G03670 40.062 322 178 6 13 325 6 321 1.16e-76 238
MS.gene26287.t1 AT5G17820 40.187 321 170 7 13 325 7 313 1.36e-75 235
MS.gene26287.t1 AT4G11290 40.994 322 174 8 15 325 10 326 1.73e-75 235
MS.gene26287.t1 AT5G15180 40.237 338 178 11 3 325 1 329 5.22e-75 234
MS.gene26287.t1 AT5G51890 39.564 321 179 7 13 325 9 322 1.12e-74 233
MS.gene26287.t1 AT5G64120 41.333 300 158 7 34 325 39 328 1.49e-74 233
MS.gene26287.t1 AT5G17820 40.187 321 170 7 13 325 60 366 1.78e-74 234
MS.gene26287.t1 AT2G41480 40.000 335 175 10 8 325 3 328 2.00e-73 230
MS.gene26287.t1 AT1G05240 40.391 307 165 7 30 325 26 325 6.41e-72 226
MS.gene26287.t1 AT1G05250 40.391 307 165 7 30 325 26 325 6.41e-72 226
MS.gene26287.t1 AT3G21770 41.214 313 168 8 22 324 21 327 8.66e-72 226
MS.gene26287.t1 AT5G14130 39.937 318 176 6 17 325 19 330 1.82e-71 225
MS.gene26287.t1 AT4G26010 39.252 321 182 7 5 322 24 334 6.28e-71 224
MS.gene26287.t1 AT4G26010 40.000 310 173 7 16 322 7 306 6.88e-71 223
MS.gene26287.t1 AT5G14130 39.937 318 176 6 17 325 60 371 8.62e-71 224
MS.gene26287.t1 AT1G30870 43.322 307 151 7 30 325 51 345 9.01e-71 224
MS.gene26287.t1 AT5G42180 40.379 317 172 8 15 323 8 315 4.19e-70 221
MS.gene26287.t1 AT5G40150 39.414 307 169 7 28 325 30 328 1.37e-68 217
MS.gene26287.t1 AT3G28200 38.961 308 168 8 28 325 19 316 2.52e-68 216
MS.gene26287.t1 AT5G39580 40.741 324 173 8 11 325 6 319 2.52e-68 216
MS.gene26287.t1 AT5G47000 40.645 310 174 6 22 325 25 330 5.16e-68 216
MS.gene26287.t1 AT2G35380 48.163 245 115 4 92 325 4 247 8.36e-68 213
MS.gene26287.t1 AT1G77100 38.957 326 183 10 8 325 2 319 1.25e-66 212
MS.gene26287.t1 AT2G24800 39.228 311 166 6 28 325 29 329 4.17e-66 211
MS.gene26287.t1 AT4G33870 34.384 349 185 7 18 324 54 400 7.37e-66 213
MS.gene26287.t1 AT1G34510 39.490 314 173 8 17 325 8 309 1.02e-65 209
MS.gene26287.t1 AT4G17690 40.532 301 170 6 30 325 26 322 2.96e-65 209
MS.gene26287.t1 AT5G64110 39.879 331 170 8 14 325 10 330 3.05e-65 209
MS.gene26287.t1 AT5G67400 40.323 310 166 8 25 321 22 325 5.30e-65 208
MS.gene26287.t1 AT4G37530 41.905 315 158 10 23 321 20 325 7.47e-65 207
MS.gene26287.t1 AT2G18980 39.329 328 176 9 11 325 6 323 2.91e-64 206
MS.gene26287.t1 AT5G64100 39.803 304 160 7 33 325 40 331 3.68e-63 203
MS.gene26287.t1 AT4G31760 37.107 318 187 6 15 325 15 326 4.56e-63 203
MS.gene26287.t1 AT4G37520 41.368 307 161 9 28 321 25 325 2.12e-62 201
MS.gene26287.t1 AT4G25980 36.364 341 186 10 1 325 1 326 7.24e-62 200
MS.gene26287.t1 AT4G37520 40.196 306 163 8 28 321 25 322 6.62e-61 197
MS.gene26287.t1 AT3G49960 38.199 322 178 9 13 321 12 325 6.75e-61 197
MS.gene26287.t1 AT4G30170 40.193 311 163 9 28 325 25 325 1.81e-60 196
MS.gene26287.t1 AT2G34060 39.739 307 168 8 29 322 41 343 1.15e-59 195
MS.gene26287.t1 AT1G24110 37.152 323 187 7 15 325 4 322 6.92e-59 192
MS.gene26287.t1 AT2G39040 38.312 308 177 6 29 325 45 350 9.35e-57 187
MS.gene26287.t1 AT5G22410 36.418 335 187 11 1 322 1 322 2.96e-55 183
MS.gene26287.t1 AT4G21960 36.789 299 184 4 30 325 31 327 2.88e-54 181
MS.gene26287.t1 AT4G37530 43.284 268 127 10 23 274 20 278 3.75e-54 179
MS.gene26287.t1 AT5G24070 38.971 272 149 6 64 325 71 335 4.93e-54 180
MS.gene26287.t1 AT2G37130 34.921 315 187 9 20 325 22 327 2.82e-53 178
MS.gene26287.t1 AT2G37130 35.099 302 180 8 33 325 2 296 9.07e-53 176
MS.gene26287.t1 AT2G43480 35.331 317 186 7 21 325 26 335 1.02e-52 176
MS.gene26287.t1 AT3G17070 33.232 328 200 9 14 325 15 339 6.94e-47 161
MS.gene26287.t1 AT5G39580 40.724 221 121 4 11 231 6 216 4.62e-44 151
MS.gene26287.t1 AT2G24800 41.379 203 109 4 28 229 29 222 2.17e-43 149
MS.gene26287.t1 AT4G25980 41.143 175 98 3 24 198 65 234 1.44e-40 144
MS.gene26287.t1 AT3G17070 33.080 263 163 8 72 325 18 276 1.34e-33 125
MS.gene26287.t1 AT4G32320 30.153 262 107 7 64 306 117 321 6.63e-19 86.3
MS.gene26287.t1 AT1G77490 27.481 262 144 9 64 307 106 339 1.41e-13 71.2
MS.gene26287.t1 AT1G77490 27.481 262 144 9 64 307 106 339 1.62e-13 71.2
MS.gene26287.t1 AT3G42570 33.613 119 75 3 83 198 32 149 7.51e-12 62.8

Find 61 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCCACCTTAGACTTTA+TGG 0.119850 5.4:+59377259 None:intergenic
TACCCATGGTTTCCTTTAAT+TGG 0.199585 5.4:+59374873 None:intergenic
CAAGAATCTCATCAACAAAA+AGG 0.247712 5.4:-59375070 MS.gene26287:CDS
TGCAGCTTGGAGGGCCATTT+TGG 0.267352 5.4:-59376224 MS.gene26287:intron
CCAAGTTTAACCTTCCAAAA+TGG 0.296962 5.4:+59376210 None:intergenic
TGTAGTATAAGTTATCAAAA+TGG 0.316765 5.4:+59375091 None:intergenic
AAGGACATGGTGGCCTTATC+TGG 0.324620 5.4:-59376072 MS.gene26287:intron
GGAAATATCAAGCCTCTTAC+CGG 0.347219 5.4:-59374931 MS.gene26287:CDS
AATGCAGGAGAGCCAATTAA+AGG 0.356166 5.4:-59374885 None:intergenic
CCCTTAGCAACCTTATCAAT+AGG 0.384569 5.4:-59376119 MS.gene26287:CDS
AGTCTTCTCTCCTTTATTAG+AGG 0.384702 5.4:+59377328 None:intergenic
AAGGTTGCTAAGGGTAGAAA+AGG 0.387632 5.4:+59376128 None:intergenic
TGCTACTGCAATGATTAAGA+TGG 0.388563 5.4:-59374953 MS.gene26287:CDS
GAGCTTTAAACCTATTGATA+AGG 0.399870 5.4:+59376109 None:intergenic
TATTGATGCCATAAAGTCTA+AGG 0.403057 5.4:-59377267 MS.gene26287:CDS
TGGAGGGTCTACTGATTCAT+TGG 0.405972 5.4:-59375019 MS.gene26287:CDS
GATGACACACCCTCTAATAA+AGG 0.415165 5.4:-59377338 MS.gene26287:CDS
ACCTATTGATAAGGTTGCTA+AGG 0.417064 5.4:+59376118 None:intergenic
ACCTCTCAAAGAATCTTTGT+TGG 0.427591 5.4:+59377298 None:intergenic
CCTCTCAAAGAATCTTTGTT+GGG 0.433102 5.4:+59377299 None:intergenic
TTCTTAGGAGCTCACACAAT+TGG 0.437641 5.4:-59375264 MS.gene26287:intron
GGAAGGTTAAACTTGGAAGA+AGG 0.441433 5.4:-59376203 MS.gene26287:CDS
CCGGATCAAAAGGTGAGATT+AGG 0.444423 5.4:-59374912 MS.gene26287:CDS
GTCTTCTCTCCTTTATTAGA+GGG 0.447683 5.4:+59377329 None:intergenic
GAAGGTTAAACTTGGAAGAA+GGG 0.455829 5.4:-59376202 MS.gene26287:CDS
GTAAATACGATCTCTATAAA+CGG 0.464729 5.4:+59375227 None:intergenic
TATAAGTTATCAAAATGGTT+TGG 0.466239 5.4:+59375096 None:intergenic
ATCAATAGGTTTAAAGCTCA+AGG 0.476560 5.4:-59376105 MS.gene26287:CDS
ACAATTCCTCTGCCTTGACT+TGG 0.477817 5.4:+59375176 None:intergenic
ACTGTTTGCATCATTGAGGC+TGG 0.487052 5.4:+59376167 None:intergenic
GCTACTGCAATGATTAAGAT+GGG 0.493974 5.4:-59374952 MS.gene26287:CDS
AAGCCTCTTACCGGATCAAA+AGG 0.499758 5.4:-59374922 MS.gene26287:CDS
CCCAACAAAGATTCTTTGAG+AGG 0.507682 5.4:-59377299 MS.gene26287:CDS
TGAAAAGCTCTTGATCAGAA+TGG 0.515690 5.4:+59375043 None:intergenic
GTGAGATTAGGAAGCAATGC+AGG 0.517002 5.4:-59374900 MS.gene26287:CDS
TCAGCACATGAGACCACACC+GGG 0.520500 5.4:+59377230 None:intergenic
CACCACTGTTTGCATCATTG+AGG 0.529112 5.4:+59376163 None:intergenic
AGCTCAAGGACTCTCTACTA+AGG 0.542515 5.4:-59376091 MS.gene26287:CDS
CCTATTGATAAGGTTGCTAA+GGG 0.554792 5.4:+59376119 None:intergenic
AACAGAATCACGAGCAGCAA+TGG 0.556484 5.4:+59377199 None:intergenic
ATAGTTTATTTGCCAAGTCA+AGG 0.563167 5.4:-59375188 MS.gene26287:CDS
AGGAATTGTCCAAGGAAAAG+TGG 0.565194 5.4:-59375162 MS.gene26287:CDS
AGGTTGCTAAGGGTAGAAAA+GGG 0.568432 5.4:+59376129 None:intergenic
CTAAGGGTAGAAAAGGGAGA+TGG 0.585994 5.4:+59376135 None:intergenic
TATTTGCCAAGTCAAGGCAG+AGG 0.591700 5.4:-59375182 MS.gene26287:CDS
CAAGGCAGAGGAATTGTCCA+AGG 0.617740 5.4:-59375170 MS.gene26287:CDS
GTCGCTAGAGAACCTCGCAT+GGG 0.619429 5.4:-59379014 MS.gene26287:CDS
TGTCGCTAGAGAACCTCGCA+TGG 0.621286 5.4:-59379015 MS.gene26287:CDS
TGATGCCATAAAGTCTAAGG+TGG 0.622773 5.4:-59377264 MS.gene26287:CDS
GCTAGAGAACCTCGCATGGG+AGG 0.623031 5.4:-59379011 MS.gene26287:CDS
CTCACACAATTGGAAAAGCA+AGG 0.632448 5.4:-59375254 MS.gene26287:CDS
AAGGTGGAGTCAGTATGCCC+CGG 0.647987 5.4:-59377248 MS.gene26287:CDS
AGGAGAGATCCTCCCATGCG+AGG 0.655274 5.4:+59379002 None:intergenic
GGAGTCAGTATGCCCCGGTG+TGG 0.661070 5.4:-59377243 MS.gene26287:CDS
ATCAGCACATGAGACCACAC+CGG 0.662563 5.4:+59377229 None:intergenic
AGGACTCTCTACTAAGGACA+TGG 0.666154 5.4:-59376085 MS.gene26287:CDS
AGTCATGAAAATGAAGACGA+AGG 0.684805 5.4:+59378982 None:intergenic
AGCCTCAATGATGCAAACAG+TGG 0.715380 5.4:-59376165 MS.gene26287:CDS
ACTCTCTACTAAGGACATGG+TGG 0.722310 5.4:-59376082 MS.gene26287:CDS
AGCGACAGCAGAGTGAACAA+CGG 0.726357 5.4:+59379031 None:intergenic
CAGCACATGAGACCACACCG+GGG 0.839989 5.4:+59377231 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATACATTTAATTAT+TGG - chr5.4:59378379-59378398 MS.gene26287:intron 10.0%
!! AATTTATTAGATAAAGATTA+AGG + chr5.4:59376179-59376198 None:intergenic 10.0%
!! ATTTATTAGATAAAGATTAA+GGG + chr5.4:59376178-59376197 None:intergenic 10.0%
!! TAATCTTTATCTAATAAATT+TGG - chr5.4:59376179-59376198 MS.gene26287:CDS 10.0%
!!! AAATTGATATCTAATTATTT+TGG - chr5.4:59377000-59377019 MS.gene26287:intron 10.0%
!!! AATAATTAAATGTATTTTCT+TGG + chr5.4:59378380-59378399 None:intergenic 10.0%
!!! AGATTGAATATATTATTTTT+TGG - chr5.4:59375667-59375686 MS.gene26287:intron 10.0%
!! AAAAATTACTAAATTTGTGT+CGG - chr5.4:59376002-59376021 MS.gene26287:intron 15.0%
!! AATTTAGTACATATTCAAAT+AGG + chr5.4:59376053-59376072 None:intergenic 15.0%
!! TGTTGAAAATGAAATTTAAA+CGG + chr5.4:59378448-59378467 None:intergenic 15.0%
!! TTGGTTACTAAATAATAATA+TGG + chr5.4:59375595-59375614 None:intergenic 15.0%
!! TTTATTAGATAAAGATTAAG+GGG + chr5.4:59376177-59376196 None:intergenic 15.0%
!!! AATTTTAAATTCTTGAGATA+GGG - chr5.4:59376087-59376106 MS.gene26287:CDS 15.0%
!!! ACACAAATTTAGTAATTTTT+TGG + chr5.4:59376002-59376021 None:intergenic 15.0%
!!! GTTCATTATTAAATTTTTTC+TGG + chr5.4:59376958-59376977 None:intergenic 15.0%
!!! TAATTTTAAATTCTTGAGAT+AGG - chr5.4:59376086-59376105 MS.gene26287:CDS 15.0%
!!! TTAGTTTATTTTTATTGAAG+AGG - chr5.4:59377278-59377297 MS.gene26287:CDS 15.0%
!! AATATAATGTTTACAAGTCT+TGG - chr5.4:59377101-59377120 MS.gene26287:intron 20.0%
!! AATATGTACTAAATTATGCA+CGG - chr5.4:59376058-59376077 MS.gene26287:intron 20.0%
!! AATATGTGCATATAAATTGT+TGG + chr5.4:59377260-59377279 None:intergenic 20.0%
!! AATATTGAGTGAATTGAATA+GGG - chr5.4:59375724-59375743 MS.gene26287:intron 20.0%
!! ATATATGTATATGTGTGTTT+GGG - chr5.4:59375202-59375221 MS.gene26287:CDS 20.0%
!! ATGTGTAAATTAGATACAAT+AGG + chr5.4:59378028-59378047 None:intergenic 20.0%
!! ATTATCTGATATGCTAAATA+TGG + chr5.4:59376537-59376556 None:intergenic 20.0%
!! TAACGAGAAAAATTTAGATT+AGG - chr5.4:59375450-59375469 MS.gene26287:intron 20.0%
!! TAATATTGAGTGAATTGAAT+AGG - chr5.4:59375723-59375742 MS.gene26287:intron 20.0%
!! TATAAGTTATCAAAATGGTT+TGG + chr5.4:59378968-59378987 None:intergenic 20.0%
!! TATATATGTATATGTGTGTT+TGG - chr5.4:59375201-59375220 MS.gene26287:CDS 20.0%
!! TGTAGTATAAGTTATCAAAA+TGG + chr5.4:59378973-59378992 None:intergenic 20.0%
!! TTATTAGAAGAAAAGAAATG+AGG + chr5.4:59377757-59377776 None:intergenic 20.0%
!! TTGTTGTCAAACTAAAAAAA+TGG - chr5.4:59377700-59377719 MS.gene26287:intron 20.0%
!!! AAATCACTTTTTTCTAAACA+GGG - chr5.4:59376678-59376697 MS.gene26287:intron 20.0%
!!! AGAAATTTCTTTTAGAAACA+TGG - chr5.4:59376211-59376230 MS.gene26287:CDS 20.0%
!!! ATTAAATGTATTTTCTTGGT+TGG + chr5.4:59378376-59378395 None:intergenic 20.0%
!!! GTTACTATTCATTTTAACTT+TGG + chr5.4:59378424-59378443 None:intergenic 20.0%
!!! TAAATCACTTTTTTCTAAAC+AGG - chr5.4:59376677-59376696 MS.gene26287:intron 20.0%
!!! TATTTTGGTGTTTGTAAAAT+GGG - chr5.4:59377015-59377034 MS.gene26287:intron 20.0%
!!! TGTTCATGTTTTTTCTTATA+GGG - chr5.4:59374937-59374956 MS.gene26287:CDS 20.0%
!!! TTATTTTGGTGTTTGTAAAA+TGG - chr5.4:59377014-59377033 MS.gene26287:intron 20.0%
!!! TTGTTCATGTTTTTTCTTAT+AGG - chr5.4:59374936-59374955 MS.gene26287:CDS 20.0%
!!! TTTATTGAAGAGGTTTTTAA+TGG - chr5.4:59377288-59377307 MS.gene26287:CDS 20.0%
! AAGAATCTCATCAACAAAAA+GGG - chr5.4:59378992-59379011 MS.gene26287:CDS 25.0%
! AGTTATGTTTAGCAAAATCA+AGG + chr5.4:59377607-59377626 None:intergenic 25.0%
! ATAATTTCGAAGAATCTGTT+TGG - chr5.4:59377500-59377519 MS.gene26287:intron 25.0%
! CCTTAAAACTTCATAAACAT+AGG - chr5.4:59376632-59376651 MS.gene26287:intron 25.0%
! GTAAATACGATCTCTATAAA+CGG + chr5.4:59378837-59378856 None:intergenic 25.0%
! TACTAGAACAAAAGGAAAAT+TGG + chr5.4:59377408-59377427 None:intergenic 25.0%
! TTAGTAGTTGATCATAGTAA+TGG + chr5.4:59375266-59375285 None:intergenic 25.0%
! TTGATATATCATCACACATT+TGG - chr5.4:59378099-59378118 MS.gene26287:intron 25.0%
! TTTACAGCCTTAAAAACATT+GGG + chr5.4:59375008-59375027 None:intergenic 25.0%
! TTTAGATTATCTGATCATCA+AGG + chr5.4:59378645-59378664 None:intergenic 25.0%
!! ACTTCATAAACATAGGATTT+TGG - chr5.4:59376639-59376658 MS.gene26287:intron 25.0%
!! AGTGTTATGTAAGTTGAATT+TGG + chr5.4:59378577-59378596 None:intergenic 25.0%
!! AGTTTTTGCTGATAATTTTC+TGG + chr5.4:59377148-59377167 None:intergenic 25.0%
!! ATGTTTAAAGTAAAGAACGT+CGG + chr5.4:59376436-59376455 None:intergenic 25.0%
!! ATTTCTTCCTCGATAAATTT+TGG - chr5.4:59375508-59375527 MS.gene26287:intron 25.0%
!! CCTATGTTTATGAAGTTTTA+AGG + chr5.4:59376635-59376654 None:intergenic 25.0%
!! TTCTATTATATTTTGCAGCT+TGG - chr5.4:59377824-59377843 MS.gene26287:intron 25.0%
!!! AACAGTACTTTTTTTTAGAG+GGG - chr5.4:59376258-59376277 MS.gene26287:intron 25.0%
!!! ACAACAGTACTTTTTTTTAG+AGG - chr5.4:59376256-59376275 MS.gene26287:intron 25.0%
!!! CAACAGTACTTTTTTTTAGA+GGG - chr5.4:59376257-59376276 MS.gene26287:intron 25.0%
AAAAAGACATGTACCAGATA+AGG + chr5.4:59378005-59378024 None:intergenic 30.0%
AAGTCACTTACTAGAACAAA+AGG + chr5.4:59377416-59377435 None:intergenic 30.0%
AATTACGCCAAAATTTATCG+AGG + chr5.4:59375518-59375537 None:intergenic 30.0%
ACGACATCAAAAAATTACAG+GGG + chr5.4:59376130-59376149 None:intergenic 30.0%
ACGCATGTCTAAATAATATG+AGG + chr5.4:59376462-59376481 None:intergenic 30.0%
AGTAACCAATTGTTCATATG+AGG - chr5.4:59375606-59375625 MS.gene26287:intron 30.0%
ATTATCACCAACCTATATGT+TGG + chr5.4:59375961-59375980 None:intergenic 30.0%
CAAGAATCTCATCAACAAAA+AGG - chr5.4:59378991-59379010 MS.gene26287:CDS 30.0%
CACGACATCAAAAAATTACA+GGG + chr5.4:59376131-59376150 None:intergenic 30.0%
CATCATCATTAAATTCGTGA+CGG + chr5.4:59375340-59375359 None:intergenic 30.0%
GAAATCCTCATATGAACAAT+TGG + chr5.4:59375614-59375633 None:intergenic 30.0%
GAGTGAGAAGTTATAATTCT+TGG - chr5.4:59377557-59377576 MS.gene26287:intron 30.0%
GTTTACAGCCTTAAAAACAT+TGG + chr5.4:59375009-59375028 None:intergenic 30.0%
TATTGATGCCATAAAGTCTA+AGG - chr5.4:59376794-59376813 MS.gene26287:intron 30.0%
TCACGACATCAAAAAATTAC+AGG + chr5.4:59376132-59376151 None:intergenic 30.0%
TGCTTGATATATCACACATT+TGG - chr5.4:59378234-59378253 MS.gene26287:intron 30.0%
TTAAGCATGACATGAAGTTT+AGG + chr5.4:59378154-59378173 None:intergenic 30.0%
TTATCACCAACCTATATGTT+GGG + chr5.4:59375960-59375979 None:intergenic 30.0%
! ATCAATAGGTTTAAAGCTCA+AGG - chr5.4:59377956-59377975 MS.gene26287:intron 30.0%
! ATTATATTTTGCAGCTTGGA+GGG - chr5.4:59377828-59377847 MS.gene26287:intron 30.0%
! CATTTTCGCTTAATATCGAA+GGG + chr5.4:59378620-59378639 None:intergenic 30.0%
! TACTTTTCCTATCTCTTTCT+AGG - chr5.4:59375801-59375820 MS.gene26287:intron 30.0%
! TATTATATTTTGCAGCTTGG+AGG - chr5.4:59377827-59377846 MS.gene26287:intron 30.0%
! TTGTTTTCTTTGTGCTTCTT+AGG - chr5.4:59378782-59378801 MS.gene26287:intron 30.0%
!! CTGGTGTCTTTAAAACATAT+TGG + chr5.4:59377129-59377148 None:intergenic 30.0%
!! GAGCTTTAAACCTATTGATA+AGG + chr5.4:59377955-59377974 None:intergenic 30.0%
!! TTTATTGTACCACTTTTCCT+TGG + chr5.4:59378911-59378930 None:intergenic 30.0%
!!! TGAAGTTTTAAGGCAATGAT+AGG + chr5.4:59376625-59376644 None:intergenic 30.0%
AAATTTAGACTGTGTGCATG+TGG - chr5.4:59376497-59376516 MS.gene26287:intron 35.0%
AAGGCAATGATAGGTAAACA+AGG + chr5.4:59376616-59376635 None:intergenic 35.0%
ACCTATTGATAAGGTTGCTA+AGG + chr5.4:59377946-59377965 None:intergenic 35.0%
ACCTCTCAAAGAATCTTTGT+TGG + chr5.4:59376766-59376785 None:intergenic 35.0%
ACGTACATCAAGCTTCAAAA+AGG + chr5.4:59376386-59376405 None:intergenic 35.0%
AGTCATGAAAATGAAGACGA+AGG + chr5.4:59375082-59375101 None:intergenic 35.0%
AGTCTTCTCTCCTTTATTAG+AGG + chr5.4:59376736-59376755 None:intergenic 35.0%
CCAAGTTTAACCTTCCAAAA+TGG + chr5.4:59377854-59377873 None:intergenic 35.0%
CCTATTGATAAGGTTGCTAA+GGG + chr5.4:59377945-59377964 None:intergenic 35.0%
CCTCTCAAAGAATCTTTGTT+GGG + chr5.4:59376765-59376784 None:intergenic 35.0%
CCTTCGATATTAAGCGAAAA+TGG - chr5.4:59378618-59378637 MS.gene26287:intron 35.0%
GAAGGTTAAACTTGGAAGAA+GGG - chr5.4:59377859-59377878 MS.gene26287:intron 35.0%
GCTACTGCAATGATTAAGAT+GGG - chr5.4:59379109-59379128 MS.gene26287:CDS 35.0%
GTCTTCTCTCCTTTATTAGA+GGG + chr5.4:59376735-59376754 None:intergenic 35.0%
TAAGACTCCTAGAAAGAGAT+AGG + chr5.4:59375811-59375830 None:intergenic 35.0%
TATCACACATTTGGTTGACT+AGG - chr5.4:59378243-59378262 MS.gene26287:intron 35.0%
TATCACCAACCTATATGTTG+GGG + chr5.4:59375959-59375978 None:intergenic 35.0%
TGAAAAGCTCTTGATCAGAA+TGG + chr5.4:59379021-59379040 None:intergenic 35.0%
TGCTACTGCAATGATTAAGA+TGG - chr5.4:59379108-59379127 MS.gene26287:CDS 35.0%
! ATCAAGAGCTTTTCAATGGA+GGG - chr5.4:59379026-59379045 MS.gene26287:CDS 35.0%
! CCATTTTCGCTTAATATCGA+AGG + chr5.4:59378621-59378640 None:intergenic 35.0%
! CGCAAGTGATTAATGAGTTT+TGG + chr5.4:59378753-59378772 None:intergenic 35.0%
! TCTGATCAAGAGCTTTTCAA+TGG - chr5.4:59379022-59379041 MS.gene26287:CDS 35.0%
! TTTTCTAAACAGGGTTGTGA+TGG - chr5.4:59376687-59376706 MS.gene26287:intron 35.0%
!! CCATTTTGGAAGGTTAAACT+TGG - chr5.4:59377851-59377870 MS.gene26287:intron 35.0%
!! GAAGTGTCCCAATGTTTTTA+AGG - chr5.4:59374998-59375017 MS.gene26287:CDS 35.0%
!!! CTTGAGATAGGGTGTTTTTT+TGG - chr5.4:59376098-59376117 MS.gene26287:CDS 35.0%
AAATCGCTCTCAAAGATGAG+TGG + chr5.4:59375929-59375948 None:intergenic 40.0%
AAGGTTGCTAAGGGTAGAAA+AGG + chr5.4:59377936-59377955 None:intergenic 40.0%
AGCATGACATGAAGTTTACG+TGG + chr5.4:59378286-59378305 None:intergenic 40.0%
AGCATGACATGAAGTTTAGG+TGG + chr5.4:59378151-59378170 None:intergenic 40.0%
AGGAATTGTCCAAGGAAAAG+TGG - chr5.4:59378899-59378918 MS.gene26287:intron 40.0%
AGGTTGCTAAGGGTAGAAAA+GGG + chr5.4:59377935-59377954 None:intergenic 40.0%
ATGTAGAGAGACTGTAGACT+TGG - chr5.4:59377197-59377216 MS.gene26287:CDS 40.0%
CATCACACATTTGGTTGACT+AGG - chr5.4:59378108-59378127 MS.gene26287:intron 40.0%
CCCAACAAAGATTCTTTGAG+AGG - chr5.4:59376762-59376781 MS.gene26287:intron 40.0%
CCCTTAGCAACCTTATCAAT+AGG - chr5.4:59377942-59377961 MS.gene26287:intron 40.0%
CTCACACAATTGGAAAAGCA+AGG - chr5.4:59378807-59378826 MS.gene26287:intron 40.0%
GATGACACACCCTCTAATAA+AGG - chr5.4:59376723-59376742 MS.gene26287:intron 40.0%
GGAAATATCAAGCCTCTTAC+CGG - chr5.4:59379130-59379149 MS.gene26287:CDS 40.0%
GGAAGGTTAAACTTGGAAGA+AGG - chr5.4:59377858-59377877 MS.gene26287:intron 40.0%
TCTACAGTCTCTCTACATCA+AGG + chr5.4:59377195-59377214 None:intergenic 40.0%
TGACTCCACCTTAGACTTTA+TGG + chr5.4:59376805-59376824 None:intergenic 40.0%
TGATGCCATAAAGTCTAAGG+TGG - chr5.4:59376797-59376816 MS.gene26287:intron 40.0%
TTACCATGTCCCCAACATAT+AGG - chr5.4:59375947-59375966 MS.gene26287:intron 40.0%
TTCTTAGGAGCTCACACAAT+TGG - chr5.4:59378797-59378816 MS.gene26287:intron 40.0%
! CCTAATCTCACCTTTTGATC+CGG + chr5.4:59379152-59379171 None:intergenic 40.0%
! GATCAAGAGCTTTTCAATGG+AGG - chr5.4:59379025-59379044 MS.gene26287:CDS 40.0%
! TCTTGGCTTTCTTGTTGACA+TGG - chr5.4:59377574-59377593 MS.gene26287:intron 40.0%
! TTTTCATGTCGTTACGCTAC+TGG - chr5.4:59375757-59375776 MS.gene26287:intron 40.0%
!! GAATCTGTTTGGTTTGACGA+TGG - chr5.4:59377511-59377530 MS.gene26287:intron 40.0%
!!! GGTTTGGTGTTTTGAAGTCT+AGG + chr5.4:59378952-59378971 None:intergenic 40.0%
AACAGAATCACGAGCAGCAA+TGG + chr5.4:59376865-59376884 None:intergenic 45.0%
AAGCCTCTTACCGGATCAAA+AGG - chr5.4:59379139-59379158 MS.gene26287:CDS 45.0%
ACTCTCTACTAAGGACATGG+TGG - chr5.4:59377979-59377998 MS.gene26287:intron 45.0%
ACTGTTTGCATCATTGAGGC+TGG + chr5.4:59377897-59377916 None:intergenic 45.0%
AGCCTCAATGATGCAAACAG+TGG - chr5.4:59377896-59377915 MS.gene26287:intron 45.0%
AGCTCAAGGACTCTCTACTA+AGG - chr5.4:59377970-59377989 MS.gene26287:intron 45.0%
AGGACTCTCTACTAAGGACA+TGG - chr5.4:59377976-59377995 MS.gene26287:intron 45.0%
CAACCTATATGTTGGGGACA+TGG + chr5.4:59375953-59375972 None:intergenic 45.0%
CACCACTGTTTGCATCATTG+AGG + chr5.4:59377901-59377920 None:intergenic 45.0%
CATGTCCCCAACATATAGGT+TGG - chr5.4:59375951-59375970 MS.gene26287:intron 45.0%
CCGGATCAAAAGGTGAGATT+AGG - chr5.4:59379149-59379168 MS.gene26287:CDS 45.0%
CTAAGGGTAGAAAAGGGAGA+TGG + chr5.4:59377929-59377948 None:intergenic 45.0%
GGCATGATATGCAATGTACG+TGG + chr5.4:59377387-59377406 None:intergenic 45.0%
GTGAGATTAGGAAGCAATGC+AGG - chr5.4:59379161-59379180 MS.gene26287:CDS 45.0%
! TCACCTTTTGATCCGGTAAG+AGG + chr5.4:59379145-59379164 None:intergenic 45.0%
!! GTACTCTGACTCTAGAGTCT+TGG - chr5.4:59378472-59378491 MS.gene26287:intron 45.0%
!! TGGAGGGTCTACTGATTCAT+TGG - chr5.4:59379042-59379061 MS.gene26287:CDS 45.0%
AGCGACAGCAGAGTGAACAA+CGG + chr5.4:59375033-59375052 None:intergenic 50.0%
ATCAGCACATGAGACCACAC+CGG + chr5.4:59376835-59376854 None:intergenic 50.0%
CAAGGCAGAGGAATTGTCCA+AGG - chr5.4:59378891-59378910 MS.gene26287:intron 50.0%
!! AAGGACATGGTGGCCTTATC+TGG - chr5.4:59377989-59378008 MS.gene26287:intron 50.0%
AAGGTGGAGTCAGTATGCCC+CGG - chr5.4:59376813-59376832 MS.gene26287:intron 55.0%
GTCGCTAGAGAACCTCGCAT+GGG - chr5.4:59375047-59375066 MS.gene26287:CDS 55.0%
TCAGCACATGAGACCACACC+GGG + chr5.4:59376834-59376853 None:intergenic 55.0%
TGTCGCTAGAGAACCTCGCA+TGG - chr5.4:59375046-59375065 MS.gene26287:CDS 55.0%
! TGCAGCTTGGAGGGCCATTT+TGG - chr5.4:59377837-59377856 MS.gene26287:intron 55.0%
!! GCTTGGAGGGCCATTTTGGA+AGG - chr5.4:59377841-59377860 MS.gene26287:intron 55.0%
AGGAGAGATCCTCCCATGCG+AGG + chr5.4:59375062-59375081 None:intergenic 60.0%
CAGCACATGAGACCACACCG+GGG + chr5.4:59376833-59376852 None:intergenic 60.0%
GCTAGAGAACCTCGCATGGG+AGG - chr5.4:59375050-59375069 MS.gene26287:CDS 60.0%
GGAGTCAGTATGCCCCGGTG+TGG - chr5.4:59376818-59376837 MS.gene26287:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 59374888 59379195 59374888 ID=MS.gene26287
chr5.4 mRNA 59374888 59379195 59374888 ID=MS.gene26287.t1;Parent=MS.gene26287
chr5.4 exon 59378971 59379195 59378971 ID=MS.gene26287.t1.exon1;Parent=MS.gene26287.t1
chr5.4 CDS 59378971 59379195 59378971 ID=cds.MS.gene26287.t1;Parent=MS.gene26287.t1
chr5.4 exon 59377193 59377384 59377193 ID=MS.gene26287.t1.exon2;Parent=MS.gene26287.t1
chr5.4 CDS 59377193 59377384 59377193 ID=cds.MS.gene26287.t1;Parent=MS.gene26287.t1
chr5.4 exon 59376073 59376241 59376073 ID=MS.gene26287.t1.exon3;Parent=MS.gene26287.t1
chr5.4 CDS 59376073 59376241 59376073 ID=cds.MS.gene26287.t1;Parent=MS.gene26287.t1
chr5.4 exon 59374888 59375279 59374888 ID=MS.gene26287.t1.exon4;Parent=MS.gene26287.t1
chr5.4 CDS 59374888 59375279 59374888 ID=cds.MS.gene26287.t1;Parent=MS.gene26287.t1
Gene Sequence

>MS.gene26287

ATGGCACTTTCTTCTTCTAAAGTTTCACTAAACTTTTTTTGCTTTGTTTTGTTCATGTTTTTTCTTATAGGGAGTTCTTTTTCTCAACTATCTGAAAATTTCTATGCTAAGAAGTGTCCCAATGTTTTTAAGGCTGTAAACTCCGTTGTTCACTCTGCTGTCGCTAGAGAACCTCGCATGGGAGGATCTCTCCTTCGTCTTCATTTTCATGACTGCTTTGTCAATGTAAATAATCTTCAAACTACGTTCTATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATATATATATGTATATGTGTGTTTGGGTGTGTGTGTTTTTTTCTTTAGTTATATATTGTTATATACCATTACTATGATCAACTACTAAGAAAACTTGCTAGAGAAATCGAGAGAGAAAACATGAATATTTTCTCTAAATCCGTCACGAATTTAATGATGATGAAATTAGAGAAATATTTCATTTTTTTGTCACTAATTTTTTTCTCTATTATTATTATATATCATTACTATATTATCTACTACTAATAAAACTAACGAGAAAAATTTAGATTAGGTAAATTTTGTGATGATAGTATTAGAAAGTGATTTCATTTCTTCCTCGATAAATTTTGGCGTAATTTATTTTATCTAATAGTGATATATAATCAATGTTATTATTTTTTTGACAAATAATCCATATTATTATTTAGTAACCAATTGTTCATATGAGGATTTCAAATGTGAAAATAAAAATATTAATATAGATAATAGATTGAATATATTATTTTTTGGTAGTTTGATAATGAGTTGAATATGATCAGTGAGTAATATTGAGTGAATTGAATAGGGTCATATACACTTTTCATGTCGTTACGCTACTGGACTATTTATACTTTATTTTTATACTTTTCCTATCTCTTTCTAGGAGTCTTATTGAGTGACGTAACTGTTGCAATAATGAAACATTTCATGCATAATTGAAAAAGAAGTAAAATGAACTGTCTATTGTTTGCATGAAATATTATGCACCACTCATCTTTGAGAGCGATTTACCATGTCCCCAACATATAGGTTGGTGATAATATATTTAAAAAAAATTAGCCAAAAAATTACTAAATTTGTGTCGGTTGAATGTGAATTTTTAAACAATTTCCTATTTGAATATGTACTAAATTATGCACGGATATGTAATTTTAAATTCTTGAGATAGGGTGTTTTTTTGGCAAGTACCCCTGTAATTTTTTGATGTCGTGAGCTAAATACTCTTTGTACTTATCCCCTTAATCTTTATCTAATAAATTTGGCTGTTCAACAGAAATTTCTTTTAGAAACATGGAAGTTTTTTAATAGTAATGAAAACAACAGTACTTTTTTTTAGAGGGGAAAACAACAGTACAAATTAGTCTTTTATTTCTTGTTAAAAAGACTAACTGTTTATTTGCATTGCGAATAAGAATATTCTGAACAAAAAAGTAAAAGATAAATCCTTTTTGAAGCTTGATGTACGTGTGCTAACAAATAGTTTATATTCAAGTCCGACGTTCTTTACTTTAAACATACACCTCATATTATTTAGACATGCGTTACAAACTATTTTACAAATTTAGACTGTGTGCATGTGGCTTTACAAATTCAACCATATTTAGCATATCAGATAATTTAAATGTGATTGACTACGCGCAATCGAATAATTTTAAATTGTAAACAACTCAAATCCTTGTTTACCTATCATTGCCTTAAAACTTCATAAACATAGGATTTTGGTGAACTTACTTATCATAAATCACTTTTTTCTAAACAGGGTTGTGATGGATCAGTGCTACTTGATGACACACCCTCTAATAAAGGAGAGAAGACTGCACTTCCCAACAAAGATTCTTTGAGAGGTTTTGAAGTTATTGATGCCATAAAGTCTAAGGTGGAGTCAGTATGCCCCGGTGTGGTCTCATGTGCTGATATCTTAGCCATTGCTGCTCGTGATTCTGTTGTAAATGTGAGTACAAAATCAATATGCTAAACATTGAATTTTTAGTAATTTTTCAAATGTAAATTAACTACCAGAAAAAATTTAATAATGAACGAAAATAGATGCGTAAAACATAAAATTGATATCTAATTATTTTGGTGTTTGTAAAATGGGCGTAGTGATTTGTTTTTTTTATTTTTAGAAATTATATATTTGCTTCATTAAATTAGTTGCTTAAATATAATGTTTACAAGTCTTGGTACCAATATGTTTTAAAGACACCAGAAAATTATCAGCAAAAACTATAAAATATTGAAATTCAGAGCAGCCTTGATGTAGAGAGACTGTAGACTTGGATGAAGTCGAATTTGATAGTTGCATAAATTATATTATCCAACAATTTATATGCACATATTAGTTTATTTTTATTGAAGAGGTTTTTAATGGAATAGTCATAGAAACAAAGTTATATCATATATTTACAATAATAAAATATAGATCAAGTGTGACGTTTAAACAACCACGTACATTGCATATCATGCCAATTTTCCTTTTGTTCTAGTAAGTGACTTTAAATATAATAGACACACACATATTTATGAATTAATTATTGCTTAACAATAATTTATACTAATAATAATTTCGAAGAATCTGTTTGGTTTGACGATGGAAGTGTCAACATGACGTTTAAACGAGTGAGAAGTTATAATTCTTGGCTTTCTTGTTGACATGGTTTTCTGCCTTGATTTTGCTAAACATAACTTCTTACATAAAATATACAAGCTAAATAATGATACATATAGATGCTTAATTAATCTAACACTCATTTTTTTTGTTTGTTGTCAAACTAAAAAAATGGTATAATATATAATTTATAAAAATTTTAAAATCCTCATTTCTTTTCTTCTAATAAATGCTTATATTTTCATTCTATCATATTAGTTTTTAAATTTATTTTTATTCTATTATATTTTGCAGCTTGGAGGGCCATTTTGGAAGGTTAAACTTGGAAGAAGGGATTCAAAAACAGCCAGCCTCAATGATGCAAACAGTGGTGTAATTCCATCTCCCTTTTCTACCCTTAGCAACCTTATCAATAGGTTTAAAGCTCAAGGACTCTCTACTAAGGACATGGTGGCCTTATCTGGTACATGTCTTTTTCCTATTGTATCTAATTTACACATTTTTTCTTCTAACTTCTATTATTATGATACAATTATTAGTTTTTATTTTGCTTGATATATCATCACACATTTGGTTGACTAGGATGTGATGTTTAAACAACCACCTAAACTTCATGTCATGCTTAATTTTCGTTTTGTTCTAAGTGACTTCTAATAAAATTATGATACAATTATTAGTTTTTATTTTGCTTGATATATCACACATTTGGTTGACTAGGATGTGATGTTTAAACAACCACGTAAACTTCATGTCATGCTTAATTTTCGTTTTGTTCTAAGTGACTTCTAATAAAAAAAAGAACAATGACACAAAAAACATGTTTATCCAACCAAGAAAATACATTTAATTATTGGTTATGTTTGAATAATGTTTCCAAAGTTAAAATGAATAGTAACACCGTTTAAATTTCATTTTCAACACTTAGTACTCTGACTCTAGAGTCTTGGAATATACAAATTCAACTTACATAGCACTATTGATTAATAAATCTAAATATTATTTGAACATTAAGAAATTATTCAAGTGCCAAATTCAACTTACATAACACTATTTATTTTTTTAGTTTCAACCCTTCGATATTAAGCGAAAATGGACCTTGATGATCAGATAATCTAAAGTTCGCTCTGAATATAAGTAAAATCTTATTAAAATTGTCTCAAACATAATTCAAATTCGAATTCTCTTGAACGATTCATTACGAACCAAAACTCATTAATCACTTGCGTCTAACTATTTGTTTTCTTTGTGCTTCTTAGGAGCTCACACAATTGGAAAAGCAAGGTGTACCGTTTATAGAGATCGTATTTACAATGATACAAATATTGATAGTTTATTTGCCAAGTCAAGGCAGAGGAATTGTCCAAGGAAAAGTGGTACAATAAAAGACAACAATGTAGCTGTCCTAGACTTCAAAACACCAAACCATTTTGATAACTTATACTACAAGAATCTCATCAACAAAAAGGGACTCCATTCTGATCAAGAGCTTTTCAATGGAGGGTCTACTGATTCATTGGTTAAATCTTATAGTAATAATCAAAATGCATTTGAATCTGATTTTGCTACTGCAATGATTAAGATGGGAAATATCAAGCCTCTTACCGGATCAAAAGGTGAGATTAGGAAGCAATGCAGGAGAGCCAATTAA
Protein sequence

>MS.gene26287.t1

MALSSSKVSLNFFCFVLFMFFLIGSSFSQLSENFYAKKCPNVFKAVNSVVHSAVAREPRMGGSLLRLHFHDCFVNGCDGSVLLDDTPSNKGEKTALPNKDSLRGFEVIDAIKSKVESVCPGVVSCADILAIAARDSVVNLGGPFWKVKLGRRDSKTASLNDANSGVIPSPFSTLSNLINRFKAQGLSTKDMVALSGAHTIGKARCTVYRDRIYNDTNIDSLFAKSRQRNCPRKSGTIKDNNVAVLDFKTPNHFDNLYYKNLINKKGLHSDQELFNGGSTDSLVKSYSNNQNAFESDFATAMIKMGNIKPLTGSKGEIRKQCRRAN