Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013400.t1 | XP_003602461.1 | 97.8 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 4.10E-169 | 604 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013400.t1 | Q9FLC0 | 73.9 | 318 | 79 | 1 | 9 | 322 | 7 | 324 | 5.2e-128 | 458.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013400.t1 | G7J9S0 | 97.8 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 3.0e-169 | 604.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009689 | MS.gene013400 | PPI |
| MS.gene26286 | MS.gene013400 | PPI |
| MS.gene049488 | MS.gene013400 | PPI |
| MS.gene49484 | MS.gene013400 | PPI |
| MS.gene41565 | MS.gene013400 | PPI |
| MS.gene013400 | MS.gene008562 | PPI |
| MS.gene013400 | MS.gene009691 | PPI |
| MS.gene26287 | MS.gene013400 | PPI |
| MS.gene38511 | MS.gene013400 | PPI |
| MS.gene017208 | MS.gene013400 | PPI |
| MS.gene013400 | MS.gene98878 | PPI |
| MS.gene017207 | MS.gene013400 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013400.t1 | MTR_3g094630 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 642 |
| MS.gene013400.t1 | MTR_3g094670 | 92.236 | 322 | 25 | 0 | 1 | 322 | 1 | 322 | 0.0 | 585 |
| MS.gene013400.t1 | MTR_3g094650 | 85.093 | 322 | 48 | 0 | 1 | 322 | 1 | 322 | 0.0 | 563 |
| MS.gene013400.t1 | MTR_5g083860 | 77.316 | 313 | 70 | 1 | 11 | 322 | 13 | 325 | 3.68e-179 | 498 |
| MS.gene013400.t1 | MTR_3g466200 | 67.834 | 314 | 100 | 1 | 10 | 322 | 7 | 320 | 6.82e-160 | 449 |
| MS.gene013400.t1 | MTR_2g084080 | 65.916 | 311 | 102 | 2 | 14 | 322 | 9 | 317 | 8.76e-149 | 421 |
| MS.gene013400.t1 | MTR_2g084110 | 64.103 | 312 | 110 | 1 | 11 | 322 | 8 | 317 | 2.35e-146 | 415 |
| MS.gene013400.t1 | MTR_2g084090 | 63.782 | 312 | 112 | 1 | 11 | 322 | 8 | 318 | 5.61e-145 | 411 |
| MS.gene013400.t1 | MTR_2g084020 | 63.777 | 323 | 111 | 3 | 1 | 322 | 1 | 318 | 6.68e-145 | 411 |
| MS.gene013400.t1 | MTR_2g084010 | 63.898 | 313 | 110 | 2 | 11 | 322 | 8 | 318 | 1.31e-143 | 408 |
| MS.gene013400.t1 | MTR_5g074970 | 63.344 | 311 | 111 | 3 | 14 | 322 | 17 | 326 | 3.25e-142 | 404 |
| MS.gene013400.t1 | MTR_2g084000 | 61.812 | 309 | 115 | 2 | 15 | 322 | 13 | 319 | 3.95e-139 | 396 |
| MS.gene013400.t1 | MTR_4g083710 | 60.127 | 316 | 122 | 4 | 11 | 322 | 9 | 324 | 2.41e-133 | 382 |
| MS.gene013400.t1 | MTR_7g072510 | 58.280 | 314 | 129 | 1 | 9 | 322 | 1 | 312 | 2.75e-133 | 381 |
| MS.gene013400.t1 | MTR_3g072190 | 58.438 | 320 | 125 | 2 | 9 | 322 | 1 | 318 | 2.65e-131 | 377 |
| MS.gene013400.t1 | MTR_3g466180 | 61.812 | 309 | 114 | 2 | 14 | 322 | 19 | 323 | 5.17e-130 | 374 |
| MS.gene013400.t1 | MTR_5g074860 | 58.176 | 318 | 122 | 6 | 9 | 321 | 13 | 324 | 3.31e-126 | 364 |
| MS.gene013400.t1 | MTR_7g072480 | 55.096 | 314 | 139 | 1 | 9 | 322 | 5 | 316 | 2.30e-125 | 362 |
| MS.gene013400.t1 | MTR_4g074995 | 58.176 | 318 | 117 | 4 | 8 | 322 | 4 | 308 | 2.75e-124 | 358 |
| MS.gene013400.t1 | MTR_4g029170 | 57.051 | 312 | 129 | 4 | 13 | 322 | 13 | 321 | 1.06e-123 | 357 |
| MS.gene013400.t1 | MTR_1g115900 | 56.410 | 312 | 130 | 4 | 14 | 322 | 13 | 321 | 6.72e-123 | 356 |
| MS.gene013400.t1 | MTR_4g074990 | 55.556 | 315 | 122 | 4 | 11 | 322 | 6 | 305 | 2.28e-122 | 353 |
| MS.gene013400.t1 | MTR_5g074710 | 55.280 | 322 | 135 | 6 | 7 | 322 | 3 | 321 | 1.51e-120 | 349 |
| MS.gene013400.t1 | MTR_4g029200 | 52.597 | 308 | 144 | 1 | 15 | 322 | 33 | 338 | 7.99e-120 | 348 |
| MS.gene013400.t1 | MTR_4g029180 | 58.020 | 293 | 119 | 3 | 32 | 322 | 31 | 321 | 9.14e-120 | 347 |
| MS.gene013400.t1 | MTR_5g074760 | 54.969 | 322 | 136 | 6 | 7 | 322 | 3 | 321 | 4.71e-119 | 346 |
| MS.gene013400.t1 | MTR_5g074740 | 54.658 | 322 | 137 | 6 | 7 | 322 | 3 | 321 | 5.99e-118 | 343 |
| MS.gene013400.t1 | MTR_7g026990 | 52.188 | 320 | 146 | 4 | 4 | 322 | 9 | 322 | 4.00e-116 | 338 |
| MS.gene013400.t1 | MTR_4g029190 | 52.303 | 304 | 144 | 1 | 20 | 322 | 37 | 340 | 1.39e-115 | 337 |
| MS.gene013400.t1 | MTR_7g093370 | 52.000 | 325 | 144 | 5 | 8 | 322 | 49 | 371 | 1.27e-114 | 336 |
| MS.gene013400.t1 | MTR_3g467600 | 50.313 | 320 | 152 | 4 | 8 | 322 | 7 | 324 | 7.33e-111 | 325 |
| MS.gene013400.t1 | MTR_3g072190 | 61.905 | 252 | 94 | 1 | 71 | 322 | 2 | 251 | 1.31e-109 | 319 |
| MS.gene013400.t1 | MTR_5g021060 | 51.485 | 303 | 137 | 3 | 28 | 322 | 30 | 330 | 1.32e-109 | 322 |
| MS.gene013400.t1 | MTR_1g054205 | 50.313 | 320 | 145 | 5 | 14 | 322 | 10 | 326 | 2.48e-108 | 318 |
| MS.gene013400.t1 | MTR_4g074980 | 52.698 | 315 | 120 | 5 | 11 | 322 | 6 | 294 | 1.15e-107 | 316 |
| MS.gene013400.t1 | MTR_8g076820 | 52.145 | 303 | 135 | 3 | 28 | 322 | 30 | 330 | 2.74e-106 | 313 |
| MS.gene013400.t1 | MTR_4g074980 | 59.274 | 248 | 97 | 3 | 11 | 254 | 6 | 253 | 3.93e-102 | 300 |
| MS.gene013400.t1 | MTR_5g017850 | 47.975 | 321 | 155 | 4 | 9 | 322 | 11 | 326 | 7.83e-102 | 302 |
| MS.gene013400.t1 | MTR_4g125940 | 49.085 | 328 | 149 | 6 | 6 | 322 | 9 | 329 | 1.24e-101 | 301 |
| MS.gene013400.t1 | MTR_2g029815 | 48.193 | 332 | 157 | 4 | 4 | 322 | 1 | 330 | 1.24e-101 | 302 |
| MS.gene013400.t1 | MTR_4g122640 | 49.508 | 305 | 146 | 3 | 24 | 322 | 34 | 336 | 2.02e-101 | 301 |
| MS.gene013400.t1 | MTR_2g040000 | 49.547 | 331 | 149 | 6 | 6 | 322 | 5 | 331 | 3.59e-101 | 300 |
| MS.gene013400.t1 | MTR_5g017860 | 46.562 | 320 | 162 | 3 | 10 | 322 | 9 | 326 | 8.27e-100 | 297 |
| MS.gene013400.t1 | MTR_2g029800 | 47.289 | 332 | 160 | 4 | 4 | 322 | 1 | 330 | 1.20e-98 | 295 |
| MS.gene013400.t1 | MTR_1g022970 | 48.355 | 304 | 146 | 3 | 28 | 322 | 46 | 347 | 2.75e-98 | 294 |
| MS.gene013400.t1 | MTR_5g014100 | 49.191 | 309 | 140 | 5 | 28 | 322 | 26 | 331 | 5.51e-98 | 292 |
| MS.gene013400.t1 | MTR_2g029820 | 46.386 | 332 | 163 | 4 | 4 | 322 | 1 | 330 | 6.89e-98 | 293 |
| MS.gene013400.t1 | MTR_2g029830 | 48.544 | 309 | 148 | 3 | 23 | 322 | 23 | 329 | 1.11e-96 | 290 |
| MS.gene013400.t1 | MTR_5g074860 | 50.000 | 318 | 109 | 9 | 9 | 321 | 13 | 285 | 1.51e-96 | 287 |
| MS.gene013400.t1 | MTR_2g029750 | 47.590 | 332 | 159 | 5 | 4 | 322 | 1 | 330 | 1.76e-96 | 289 |
| MS.gene013400.t1 | MTR_2g029560 | 48.693 | 306 | 146 | 4 | 26 | 322 | 22 | 325 | 1.89e-96 | 289 |
| MS.gene013400.t1 | MTR_2g029860 | 48.348 | 333 | 158 | 5 | 1 | 322 | 1 | 330 | 4.39e-96 | 288 |
| MS.gene013400.t1 | MTR_4g030890 | 46.602 | 309 | 153 | 4 | 21 | 322 | 93 | 396 | 3.22e-94 | 286 |
| MS.gene013400.t1 | MTR_2g029740 | 46.084 | 332 | 164 | 5 | 4 | 322 | 1 | 330 | 4.02e-94 | 283 |
| MS.gene013400.t1 | MTR_4g031140 | 46.405 | 306 | 152 | 4 | 24 | 322 | 24 | 324 | 9.10e-94 | 282 |
| MS.gene013400.t1 | MTR_2g028980 | 47.678 | 323 | 157 | 5 | 9 | 322 | 11 | 330 | 1.34e-93 | 282 |
| MS.gene013400.t1 | MTR_2g029730 | 46.296 | 324 | 163 | 3 | 8 | 322 | 5 | 326 | 1.37e-92 | 279 |
| MS.gene013400.t1 | MTR_5g049280 | 44.373 | 311 | 161 | 5 | 23 | 322 | 28 | 337 | 1.38e-92 | 279 |
| MS.gene013400.t1 | MTR_4g125940 | 53.069 | 277 | 115 | 5 | 57 | 322 | 2 | 274 | 9.49e-92 | 275 |
| MS.gene013400.t1 | MTR_2g029850 | 45.783 | 332 | 165 | 4 | 4 | 322 | 1 | 330 | 1.02e-90 | 275 |
| MS.gene013400.t1 | MTR_2g029910 | 44.207 | 328 | 169 | 4 | 8 | 322 | 6 | 332 | 1.88e-90 | 274 |
| MS.gene013400.t1 | MTR_0155s0040 | 41.325 | 317 | 178 | 5 | 7 | 322 | 6 | 315 | 4.66e-84 | 256 |
| MS.gene013400.t1 | MTR_1g101830 | 41.818 | 330 | 176 | 7 | 1 | 322 | 1 | 322 | 8.10e-83 | 253 |
| MS.gene013400.t1 | MTR_3g092990 | 38.838 | 327 | 191 | 3 | 4 | 322 | 1 | 326 | 3.33e-82 | 252 |
| MS.gene013400.t1 | MTR_7g029030 | 41.066 | 319 | 181 | 4 | 8 | 322 | 5 | 320 | 7.19e-82 | 251 |
| MS.gene013400.t1 | MTR_1g077000 | 40.123 | 324 | 178 | 6 | 8 | 322 | 11 | 327 | 3.38e-81 | 249 |
| MS.gene013400.t1 | MTR_4g046713 | 40.317 | 315 | 177 | 4 | 12 | 318 | 11 | 322 | 1.10e-79 | 246 |
| MS.gene013400.t1 | MTR_4g114210 | 42.813 | 327 | 165 | 8 | 11 | 322 | 1 | 320 | 1.14e-79 | 245 |
| MS.gene013400.t1 | MTR_2g088770 | 42.767 | 318 | 168 | 7 | 14 | 322 | 13 | 325 | 2.10e-79 | 245 |
| MS.gene013400.t1 | MTR_1g025980 | 42.006 | 319 | 171 | 6 | 7 | 318 | 3 | 314 | 1.44e-78 | 242 |
| MS.gene013400.t1 | MTR_5g022870 | 41.641 | 329 | 164 | 9 | 9 | 322 | 1 | 316 | 7.25e-78 | 241 |
| MS.gene013400.t1 | MTR_8g075100 | 42.395 | 309 | 159 | 7 | 23 | 322 | 21 | 319 | 5.29e-77 | 238 |
| MS.gene013400.t1 | MTR_2g029830 | 47.674 | 258 | 124 | 3 | 74 | 322 | 6 | 261 | 4.67e-76 | 235 |
| MS.gene013400.t1 | MTR_2g008710 | 39.571 | 326 | 179 | 6 | 8 | 322 | 7 | 325 | 1.07e-73 | 230 |
| MS.gene013400.t1 | MTR_7g107520 | 40.379 | 317 | 176 | 5 | 13 | 322 | 10 | 320 | 4.78e-73 | 228 |
| MS.gene013400.t1 | MTR_6g027440 | 37.224 | 317 | 188 | 4 | 11 | 322 | 4 | 314 | 1.52e-72 | 227 |
| MS.gene013400.t1 | MTR_7g086820 | 37.919 | 298 | 181 | 3 | 26 | 322 | 18 | 312 | 9.88e-72 | 225 |
| MS.gene013400.t1 | MTR_1g009750 | 39.009 | 323 | 182 | 6 | 11 | 322 | 10 | 328 | 1.16e-71 | 225 |
| MS.gene013400.t1 | MTR_3g092990 | 37.003 | 327 | 186 | 4 | 4 | 322 | 1 | 315 | 2.90e-71 | 224 |
| MS.gene013400.t1 | MTR_5g016010 | 37.910 | 335 | 181 | 7 | 1 | 318 | 1 | 325 | 4.09e-70 | 221 |
| MS.gene013400.t1 | MTR_1g086320 | 37.423 | 326 | 192 | 3 | 9 | 322 | 8 | 333 | 4.73e-70 | 221 |
| MS.gene013400.t1 | MTR_2g437770 | 40.264 | 303 | 162 | 7 | 28 | 322 | 50 | 341 | 1.11e-69 | 220 |
| MS.gene013400.t1 | MTR_6g043280 | 41.137 | 299 | 165 | 6 | 28 | 322 | 41 | 332 | 1.23e-69 | 220 |
| MS.gene013400.t1 | MTR_4g133800 | 39.404 | 302 | 165 | 6 | 29 | 322 | 42 | 333 | 1.55e-68 | 217 |
| MS.gene013400.t1 | MTR_3g072210 | 57.754 | 187 | 75 | 3 | 138 | 322 | 54 | 238 | 1.61e-68 | 214 |
| MS.gene013400.t1 | MTR_5g074700 | 51.101 | 227 | 93 | 6 | 99 | 322 | 3 | 214 | 4.10e-68 | 212 |
| MS.gene013400.t1 | MTR_1g038680 | 39.203 | 301 | 172 | 4 | 32 | 322 | 33 | 332 | 4.65e-68 | 216 |
| MS.gene013400.t1 | MTR_4g087965 | 39.604 | 303 | 171 | 5 | 27 | 318 | 41 | 342 | 1.25e-67 | 215 |
| MS.gene013400.t1 | MTR_4g127670 | 38.961 | 308 | 169 | 6 | 27 | 322 | 23 | 323 | 2.15e-67 | 214 |
| MS.gene013400.t1 | MTR_4g095450 | 37.695 | 321 | 182 | 6 | 9 | 318 | 7 | 320 | 6.76e-66 | 210 |
| MS.gene013400.t1 | MTR_6g043460 | 36.527 | 334 | 194 | 6 | 1 | 322 | 1 | 328 | 7.05e-66 | 211 |
| MS.gene013400.t1 | MTR_2g077990 | 36.364 | 330 | 172 | 6 | 28 | 320 | 76 | 404 | 8.98e-66 | 212 |
| MS.gene013400.t1 | MTR_1g086490 | 36.826 | 334 | 190 | 5 | 9 | 322 | 8 | 340 | 1.62e-65 | 210 |
| MS.gene013400.t1 | MTR_2g099175 | 35.976 | 328 | 189 | 7 | 9 | 322 | 15 | 335 | 2.34e-65 | 209 |
| MS.gene013400.t1 | MTR_2g067440 | 35.562 | 329 | 175 | 6 | 28 | 321 | 60 | 386 | 2.61e-65 | 211 |
| MS.gene013400.t1 | MTR_1g066710 | 35.880 | 301 | 187 | 4 | 26 | 322 | 25 | 323 | 1.37e-64 | 207 |
| MS.gene013400.t1 | MTR_7g086870 | 35.254 | 295 | 186 | 3 | 28 | 322 | 22 | 311 | 1.60e-64 | 206 |
| MS.gene013400.t1 | MTR_4g132490 | 33.229 | 319 | 207 | 2 | 9 | 322 | 10 | 327 | 1.96e-64 | 206 |
| MS.gene013400.t1 | MTR_2g008160 | 38.535 | 314 | 174 | 7 | 21 | 322 | 17 | 323 | 6.23e-64 | 205 |
| MS.gene013400.t1 | MTR_1g090760 | 34.877 | 324 | 199 | 6 | 9 | 322 | 9 | 330 | 1.14e-63 | 205 |
| MS.gene013400.t1 | MTR_2g078610 | 35.435 | 333 | 171 | 8 | 28 | 320 | 76 | 404 | 2.00e-63 | 206 |
| MS.gene013400.t1 | MTR_1g066380 | 34.754 | 305 | 185 | 4 | 26 | 322 | 25 | 323 | 1.12e-61 | 199 |
| MS.gene013400.t1 | MTR_0286s0010 | 34.161 | 322 | 193 | 6 | 14 | 322 | 19 | 334 | 2.92e-61 | 198 |
| MS.gene013400.t1 | MTR_6g008075 | 34.161 | 322 | 193 | 6 | 14 | 322 | 19 | 334 | 2.92e-61 | 198 |
| MS.gene013400.t1 | MTR_1g009750 | 36.137 | 321 | 177 | 7 | 11 | 322 | 10 | 311 | 3.86e-60 | 195 |
| MS.gene013400.t1 | MTR_1g066640 | 34.754 | 305 | 185 | 4 | 26 | 322 | 25 | 323 | 4.13e-60 | 195 |
| MS.gene013400.t1 | MTR_8g062780 | 35.016 | 317 | 195 | 5 | 15 | 322 | 10 | 324 | 6.17e-60 | 195 |
| MS.gene013400.t1 | MTR_2g078280 | 35.535 | 318 | 167 | 6 | 28 | 308 | 76 | 392 | 9.39e-60 | 196 |
| MS.gene013400.t1 | MTR_1g066680 | 34.000 | 300 | 193 | 4 | 26 | 322 | 25 | 322 | 1.47e-59 | 194 |
| MS.gene013400.t1 | MTR_2g008730 | 36.503 | 326 | 165 | 6 | 8 | 322 | 7 | 301 | 6.78e-59 | 191 |
| MS.gene013400.t1 | MTR_4g132110 | 33.538 | 325 | 199 | 5 | 9 | 322 | 10 | 328 | 8.21e-59 | 192 |
| MS.gene013400.t1 | MTR_7g072490 | 44.628 | 242 | 78 | 2 | 74 | 315 | 2 | 187 | 1.61e-58 | 187 |
| MS.gene013400.t1 | MTR_3g105790 | 33.739 | 329 | 201 | 4 | 4 | 322 | 1 | 322 | 1.02e-57 | 189 |
| MS.gene013400.t1 | MTR_4g132110 | 33.030 | 330 | 199 | 6 | 9 | 322 | 10 | 333 | 1.52e-56 | 186 |
| MS.gene013400.t1 | MTR_6g043240 | 34.899 | 298 | 183 | 6 | 28 | 322 | 42 | 331 | 7.21e-56 | 185 |
| MS.gene013400.t1 | MTR_5g033470 | 36.137 | 321 | 175 | 8 | 22 | 322 | 67 | 377 | 1.74e-53 | 179 |
| MS.gene013400.t1 | MTR_2g008160 | 36.364 | 308 | 154 | 8 | 21 | 322 | 17 | 288 | 8.32e-53 | 175 |
| MS.gene013400.t1 | MTR_0147s0010 | 31.056 | 322 | 183 | 5 | 25 | 321 | 74 | 381 | 1.17e-51 | 175 |
| MS.gene013400.t1 | MTR_1g066380 | 34.363 | 259 | 156 | 4 | 72 | 322 | 3 | 255 | 1.09e-47 | 161 |
| MS.gene013400.t1 | MTR_2g067450 | 33.861 | 316 | 170 | 10 | 28 | 321 | 11 | 309 | 2.27e-47 | 162 |
| MS.gene013400.t1 | MTR_3g072260 | 66.055 | 109 | 37 | 0 | 27 | 135 | 25 | 133 | 6.40e-46 | 152 |
| MS.gene013400.t1 | MTR_2g008160 | 43.353 | 173 | 94 | 3 | 21 | 193 | 17 | 185 | 4.37e-42 | 145 |
| MS.gene013400.t1 | MTR_3g105790 | 35.950 | 242 | 142 | 3 | 91 | 322 | 8 | 246 | 1.29e-38 | 137 |
| MS.gene013400.t1 | MTR_2g029880 | 41.146 | 192 | 92 | 4 | 140 | 322 | 9 | 188 | 8.36e-38 | 134 |
| MS.gene013400.t1 | MTR_2g077980 | 29.455 | 275 | 147 | 8 | 90 | 320 | 11 | 282 | 2.20e-28 | 111 |
| MS.gene013400.t1 | MTR_2g078560 | 30.180 | 222 | 119 | 4 | 133 | 318 | 95 | 316 | 4.83e-27 | 108 |
| MS.gene013400.t1 | MTR_5g074770 | 48.980 | 98 | 47 | 2 | 226 | 321 | 12 | 108 | 1.14e-26 | 101 |
| MS.gene013400.t1 | MTR_3g462850 | 38.028 | 142 | 76 | 5 | 192 | 322 | 9 | 149 | 4.02e-24 | 96.3 |
| MS.gene013400.t1 | MTR_7g086790 | 42.500 | 120 | 65 | 3 | 75 | 194 | 17 | 132 | 3.46e-23 | 95.1 |
| MS.gene013400.t1 | MTR_4g114220 | 39.855 | 138 | 59 | 4 | 40 | 169 | 15 | 136 | 1.84e-22 | 91.7 |
| MS.gene013400.t1 | MTR_4g031040 | 35.673 | 171 | 71 | 4 | 89 | 259 | 3 | 134 | 1.32e-21 | 89.4 |
| MS.gene013400.t1 | MTR_5g058120 | 32.484 | 157 | 96 | 3 | 164 | 318 | 7 | 155 | 2.77e-19 | 85.9 |
| MS.gene013400.t1 | MTR_6g048160 | 55.556 | 72 | 28 | 2 | 67 | 138 | 22 | 89 | 4.20e-19 | 80.9 |
| MS.gene013400.t1 | MTR_1g089005 | 38.636 | 132 | 74 | 2 | 14 | 139 | 1 | 131 | 6.27e-19 | 82.4 |
| MS.gene013400.t1 | MTR_3g107060 | 26.374 | 273 | 132 | 9 | 44 | 301 | 92 | 310 | 7.57e-18 | 83.2 |
| MS.gene013400.t1 | MTR_1g098320 | 44.737 | 76 | 42 | 0 | 243 | 318 | 45 | 120 | 3.66e-17 | 77.4 |
| MS.gene013400.t1 | MTR_2g029930 | 37.069 | 116 | 41 | 4 | 14 | 111 | 1 | 102 | 1.50e-16 | 74.7 |
| MS.gene013400.t1 | MTR_7g107500 | 44.048 | 84 | 46 | 1 | 239 | 322 | 15 | 97 | 6.95e-15 | 69.7 |
| MS.gene013400.t1 | MTR_5g022510 | 25.692 | 253 | 134 | 9 | 62 | 304 | 34 | 242 | 6.00e-14 | 71.2 |
| MS.gene013400.t1 | MTR_7g086810 | 30.000 | 120 | 58 | 1 | 26 | 145 | 4 | 97 | 7.63e-14 | 70.5 |
| MS.gene013400.t1 | MTR_7g086785 | 29.787 | 141 | 93 | 2 | 74 | 214 | 4 | 138 | 1.18e-13 | 67.4 |
| MS.gene013400.t1 | MTR_5g022510 | 26.699 | 206 | 106 | 7 | 109 | 304 | 47 | 217 | 1.76e-13 | 69.7 |
| MS.gene013400.t1 | MTR_4g012865 | 39.437 | 71 | 43 | 0 | 25 | 95 | 74 | 144 | 3.17e-13 | 66.6 |
| MS.gene013400.t1 | MTR_0147s0040 | 36.364 | 77 | 49 | 0 | 244 | 320 | 5 | 81 | 5.37e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013400.t1 | AT5G05340 | 77.441 | 297 | 67 | 0 | 26 | 322 | 28 | 324 | 2.45e-174 | 486 |
| MS.gene013400.t1 | AT5G58400 | 61.709 | 316 | 120 | 1 | 8 | 322 | 10 | 325 | 2.54e-143 | 407 |
| MS.gene013400.t1 | AT5G58390 | 56.508 | 315 | 136 | 1 | 9 | 322 | 2 | 316 | 5.84e-130 | 373 |
| MS.gene013400.t1 | AT1G14550 | 53.943 | 317 | 138 | 5 | 9 | 322 | 10 | 321 | 2.32e-119 | 347 |
| MS.gene013400.t1 | AT5G06720 | 53.823 | 327 | 139 | 5 | 6 | 322 | 9 | 333 | 3.56e-119 | 347 |
| MS.gene013400.t1 | AT1G14540 | 54.019 | 311 | 139 | 3 | 14 | 322 | 7 | 315 | 6.93e-119 | 345 |
| MS.gene013400.t1 | AT5G06730 | 51.220 | 328 | 146 | 5 | 6 | 322 | 10 | 334 | 7.84e-114 | 334 |
| MS.gene013400.t1 | AT4G36430 | 49.530 | 319 | 151 | 3 | 12 | 322 | 14 | 330 | 4.41e-110 | 323 |
| MS.gene013400.t1 | AT2G18150 | 48.867 | 309 | 148 | 3 | 22 | 322 | 30 | 336 | 1.54e-107 | 317 |
| MS.gene013400.t1 | AT2G18140 | 48.710 | 310 | 149 | 3 | 21 | 322 | 28 | 335 | 3.39e-106 | 313 |
| MS.gene013400.t1 | AT5G66390 | 49.175 | 303 | 144 | 3 | 28 | 322 | 33 | 333 | 6.21e-105 | 310 |
| MS.gene013400.t1 | AT3G50990 | 50.649 | 308 | 142 | 4 | 23 | 322 | 36 | 341 | 8.41e-105 | 310 |
| MS.gene013400.t1 | AT1G44970 | 50.962 | 312 | 142 | 3 | 20 | 322 | 37 | 346 | 4.03e-104 | 308 |
| MS.gene013400.t1 | AT1G49570 | 49.007 | 302 | 144 | 3 | 26 | 318 | 46 | 346 | 3.57e-99 | 296 |
| MS.gene013400.t1 | AT4G16270 | 50.000 | 304 | 138 | 5 | 28 | 322 | 50 | 348 | 1.64e-98 | 294 |
| MS.gene013400.t1 | AT4G08770 | 48.562 | 313 | 148 | 4 | 21 | 322 | 17 | 327 | 4.76e-98 | 293 |
| MS.gene013400.t1 | AT5G19890 | 49.524 | 315 | 140 | 6 | 19 | 322 | 21 | 327 | 2.09e-97 | 291 |
| MS.gene013400.t1 | AT4G08780 | 47.742 | 310 | 149 | 4 | 24 | 322 | 20 | 327 | 5.26e-97 | 290 |
| MS.gene013400.t1 | AT2G38390 | 46.828 | 331 | 160 | 7 | 4 | 322 | 7 | 333 | 1.52e-96 | 290 |
| MS.gene013400.t1 | AT3G32980 | 47.516 | 322 | 154 | 5 | 14 | 322 | 15 | 334 | 3.01e-96 | 289 |
| MS.gene013400.t1 | AT1G68850 | 43.137 | 306 | 163 | 3 | 28 | 322 | 30 | 335 | 3.22e-96 | 288 |
| MS.gene013400.t1 | AT2G35380 | 46.519 | 316 | 154 | 3 | 20 | 322 | 22 | 335 | 5.49e-96 | 288 |
| MS.gene013400.t1 | AT2G38380 | 46.201 | 329 | 165 | 5 | 4 | 322 | 7 | 333 | 8.13e-95 | 285 |
| MS.gene013400.t1 | AT5G19880 | 46.273 | 322 | 158 | 5 | 14 | 322 | 10 | 329 | 1.42e-94 | 284 |
| MS.gene013400.t1 | AT3G49120 | 46.130 | 323 | 161 | 4 | 11 | 322 | 15 | 335 | 8.92e-92 | 277 |
| MS.gene013400.t1 | AT2G22420 | 43.344 | 323 | 171 | 4 | 7 | 322 | 2 | 319 | 1.03e-91 | 276 |
| MS.gene013400.t1 | AT3G49110 | 44.753 | 324 | 166 | 4 | 10 | 322 | 15 | 336 | 2.97e-90 | 273 |
| MS.gene013400.t1 | AT3G01190 | 41.538 | 325 | 174 | 7 | 7 | 322 | 4 | 321 | 1.61e-81 | 250 |
| MS.gene013400.t1 | AT5G42180 | 42.006 | 319 | 170 | 7 | 11 | 321 | 5 | 316 | 3.38e-79 | 244 |
| MS.gene013400.t1 | AT5G15180 | 40.584 | 308 | 169 | 6 | 24 | 322 | 27 | 329 | 5.21e-79 | 244 |
| MS.gene013400.t1 | AT5G51890 | 40.498 | 321 | 177 | 6 | 9 | 322 | 9 | 322 | 3.30e-78 | 242 |
| MS.gene013400.t1 | AT5G64120 | 42.282 | 298 | 157 | 6 | 32 | 322 | 39 | 328 | 1.32e-77 | 240 |
| MS.gene013400.t1 | AT4G33420 | 39.683 | 315 | 182 | 5 | 9 | 322 | 18 | 325 | 6.16e-77 | 238 |
| MS.gene013400.t1 | AT2G41480 | 39.514 | 329 | 178 | 8 | 8 | 322 | 7 | 328 | 6.90e-77 | 238 |
| MS.gene013400.t1 | AT4G33420 | 39.683 | 315 | 182 | 5 | 9 | 322 | 65 | 372 | 3.73e-76 | 238 |
| MS.gene013400.t1 | AT1G05240 | 39.867 | 301 | 166 | 5 | 28 | 318 | 26 | 321 | 1.50e-75 | 235 |
| MS.gene013400.t1 | AT1G05250 | 39.867 | 301 | 166 | 5 | 28 | 318 | 26 | 321 | 1.50e-75 | 235 |
| MS.gene013400.t1 | AT1G71695 | 41.806 | 299 | 167 | 4 | 28 | 322 | 44 | 339 | 1.27e-74 | 234 |
| MS.gene013400.t1 | AT5G14130 | 38.080 | 323 | 185 | 5 | 11 | 322 | 12 | 330 | 2.26e-74 | 232 |
| MS.gene013400.t1 | AT5G14130 | 38.080 | 323 | 185 | 5 | 11 | 322 | 53 | 371 | 5.59e-74 | 233 |
| MS.gene013400.t1 | AT5G17820 | 38.170 | 317 | 177 | 5 | 13 | 322 | 9 | 313 | 6.24e-74 | 230 |
| MS.gene013400.t1 | AT1G05260 | 38.690 | 336 | 178 | 9 | 4 | 322 | 1 | 325 | 2.14e-73 | 229 |
| MS.gene013400.t1 | AT5G17820 | 38.170 | 317 | 177 | 5 | 13 | 322 | 62 | 366 | 4.15e-73 | 230 |
| MS.gene013400.t1 | AT3G03670 | 38.650 | 326 | 183 | 5 | 8 | 322 | 2 | 321 | 1.71e-72 | 227 |
| MS.gene013400.t1 | AT4G11290 | 37.461 | 323 | 191 | 4 | 9 | 322 | 6 | 326 | 2.96e-72 | 226 |
| MS.gene013400.t1 | AT2G35380 | 47.561 | 246 | 114 | 3 | 90 | 322 | 4 | 247 | 3.69e-71 | 221 |
| MS.gene013400.t1 | AT2G18980 | 38.298 | 329 | 184 | 7 | 5 | 322 | 3 | 323 | 8.70e-71 | 223 |
| MS.gene013400.t1 | AT1G77100 | 40.615 | 325 | 174 | 9 | 11 | 322 | 1 | 319 | 1.96e-70 | 222 |
| MS.gene013400.t1 | AT3G21770 | 38.585 | 311 | 172 | 7 | 20 | 318 | 21 | 324 | 2.38e-70 | 222 |
| MS.gene013400.t1 | AT4G37530 | 39.297 | 313 | 168 | 5 | 21 | 318 | 20 | 325 | 2.43e-70 | 222 |
| MS.gene013400.t1 | AT3G49960 | 38.138 | 333 | 183 | 6 | 1 | 318 | 1 | 325 | 2.93e-70 | 221 |
| MS.gene013400.t1 | AT4G30170 | 39.482 | 309 | 167 | 6 | 26 | 322 | 25 | 325 | 5.85e-70 | 221 |
| MS.gene013400.t1 | AT5G40150 | 38.487 | 304 | 181 | 4 | 23 | 322 | 27 | 328 | 9.21e-70 | 220 |
| MS.gene013400.t1 | AT4G33870 | 34.524 | 336 | 177 | 4 | 26 | 320 | 66 | 399 | 1.99e-69 | 222 |
| MS.gene013400.t1 | AT4G26010 | 38.387 | 310 | 182 | 4 | 14 | 322 | 8 | 309 | 2.48e-69 | 218 |
| MS.gene013400.t1 | AT5G39580 | 40.248 | 323 | 174 | 9 | 9 | 322 | 7 | 319 | 3.24e-69 | 218 |
| MS.gene013400.t1 | AT5G47000 | 37.539 | 317 | 191 | 4 | 11 | 322 | 16 | 330 | 6.10e-69 | 218 |
| MS.gene013400.t1 | AT4G26010 | 38.387 | 310 | 182 | 4 | 14 | 322 | 36 | 337 | 6.35e-69 | 218 |
| MS.gene013400.t1 | AT4G17690 | 38.889 | 306 | 183 | 3 | 20 | 322 | 18 | 322 | 7.36e-69 | 218 |
| MS.gene013400.t1 | AT3G28200 | 36.964 | 303 | 186 | 4 | 23 | 322 | 16 | 316 | 1.37e-67 | 214 |
| MS.gene013400.t1 | AT5G67400 | 37.690 | 329 | 190 | 6 | 1 | 318 | 1 | 325 | 1.56e-67 | 214 |
| MS.gene013400.t1 | AT2G34060 | 40.523 | 306 | 170 | 5 | 25 | 319 | 39 | 343 | 3.74e-67 | 214 |
| MS.gene013400.t1 | AT4G37520 | 38.312 | 308 | 168 | 6 | 26 | 318 | 25 | 325 | 5.81e-67 | 213 |
| MS.gene013400.t1 | AT1G30870 | 38.033 | 305 | 169 | 6 | 28 | 322 | 51 | 345 | 8.18e-67 | 213 |
| MS.gene013400.t1 | AT1G24110 | 35.802 | 324 | 194 | 5 | 11 | 322 | 1 | 322 | 3.72e-65 | 208 |
| MS.gene013400.t1 | AT4G37520 | 37.338 | 308 | 168 | 6 | 26 | 318 | 25 | 322 | 6.73e-65 | 207 |
| MS.gene013400.t1 | AT1G34510 | 37.171 | 304 | 182 | 6 | 20 | 322 | 14 | 309 | 2.80e-64 | 206 |
| MS.gene013400.t1 | AT4G31760 | 35.366 | 328 | 195 | 4 | 4 | 322 | 7 | 326 | 8.91e-64 | 205 |
| MS.gene013400.t1 | AT4G25980 | 36.111 | 324 | 187 | 8 | 12 | 322 | 10 | 326 | 1.14e-63 | 204 |
| MS.gene013400.t1 | AT2G39040 | 38.339 | 313 | 179 | 7 | 22 | 322 | 40 | 350 | 3.60e-62 | 201 |
| MS.gene013400.t1 | AT2G24800 | 37.377 | 305 | 179 | 4 | 26 | 322 | 29 | 329 | 6.15e-61 | 197 |
| MS.gene013400.t1 | AT4G37530 | 40.602 | 266 | 136 | 5 | 21 | 271 | 20 | 278 | 1.83e-60 | 195 |
| MS.gene013400.t1 | AT5G64110 | 37.003 | 327 | 180 | 7 | 14 | 322 | 12 | 330 | 4.61e-60 | 195 |
| MS.gene013400.t1 | AT5G64100 | 36.877 | 301 | 170 | 6 | 32 | 322 | 41 | 331 | 5.11e-60 | 195 |
| MS.gene013400.t1 | AT4G21960 | 34.323 | 303 | 185 | 4 | 28 | 322 | 31 | 327 | 5.99e-59 | 192 |
| MS.gene013400.t1 | AT2G37130 | 33.013 | 312 | 198 | 6 | 17 | 322 | 21 | 327 | 2.49e-57 | 188 |
| MS.gene013400.t1 | AT2G43480 | 32.653 | 343 | 194 | 8 | 9 | 322 | 1 | 335 | 2.57e-57 | 188 |
| MS.gene013400.t1 | AT3G17070 | 34.259 | 324 | 197 | 6 | 14 | 322 | 17 | 339 | 3.78e-56 | 186 |
| MS.gene013400.t1 | AT5G24070 | 33.434 | 332 | 195 | 8 | 9 | 322 | 12 | 335 | 6.91e-56 | 185 |
| MS.gene013400.t1 | AT2G37130 | 32.997 | 297 | 190 | 5 | 32 | 322 | 3 | 296 | 1.15e-55 | 183 |
| MS.gene013400.t1 | AT5G22410 | 35.562 | 329 | 188 | 12 | 7 | 321 | 6 | 324 | 8.33e-55 | 182 |
| MS.gene013400.t1 | AT5G39580 | 38.362 | 232 | 133 | 5 | 9 | 240 | 7 | 228 | 1.18e-44 | 152 |
| MS.gene013400.t1 | AT4G25980 | 40.217 | 184 | 106 | 3 | 12 | 195 | 55 | 234 | 2.94e-41 | 145 |
| MS.gene013400.t1 | AT3G17070 | 32.184 | 261 | 167 | 5 | 70 | 322 | 18 | 276 | 4.01e-39 | 139 |
| MS.gene013400.t1 | AT2G24800 | 41.071 | 168 | 95 | 1 | 26 | 193 | 29 | 192 | 6.88e-38 | 135 |
| MS.gene013400.t1 | AT3G42570 | 38.462 | 91 | 55 | 1 | 104 | 193 | 57 | 147 | 2.35e-15 | 72.8 |
| MS.gene013400.t1 | AT4G35970 | 24.803 | 254 | 134 | 8 | 62 | 304 | 33 | 240 | 2.12e-14 | 72.8 |
| MS.gene013400.t1 | AT4G35970 | 26.068 | 234 | 116 | 8 | 62 | 284 | 33 | 220 | 1.91e-13 | 68.9 |
Find 85 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTATCTGTTCTCATAAT+AGG | 0.139329 | 3.4:+86083138 | MS.gene013400:CDS |
| CCACGAGCAGAGTTTCTATT+TGG | 0.150735 | 3.4:-86083583 | None:intergenic |
| GATGACACATCAAGCTTTAC+TGG | 0.225638 | 3.4:+86083544 | MS.gene013400:CDS |
| AGAGAGTTTGGGACAAGTTT+TGG | 0.290073 | 3.4:-86083196 | None:intergenic |
| TCCCCTGATCCTGATGCCTT+TGG | 0.297710 | 3.4:-86084192 | None:intergenic |
| TTTCACTGTGGTAGAGAGTT+TGG | 0.308285 | 3.4:-86083208 | None:intergenic |
| GCTAATCTAGAACAATTTAA+AGG | 0.310910 | 3.4:-86083102 | None:intergenic |
| AAGCAAGGTGCACTAACTTT+AGG | 0.315415 | 3.4:+86084106 | MS.gene013400:CDS |
| CCCCTGATCCTGATGCCTTT+GGG | 0.331723 | 3.4:-86084191 | None:intergenic |
| TTCTATCTGTTCTCATAATA+GGG | 0.338026 | 3.4:+86083139 | MS.gene013400:CDS |
| CAATGTGACCAAATCCTTGC+TGG | 0.359724 | 3.4:-86083935 | None:intergenic |
| AGGATCAGGGGACAACAATT+TGG | 0.366559 | 3.4:+86084203 | MS.gene013400:CDS |
| TGCCCAAAGGCATCAGGATC+AGG | 0.367698 | 3.4:+86084189 | MS.gene013400:CDS |
| CATTCGGGCCTCCTTTGATA+TGG | 0.369430 | 3.4:-86083247 | None:intergenic |
| AAGGATTTGGTCACATTGTC+AGG | 0.376723 | 3.4:+86083940 | MS.gene013400:CDS |
| TTCACTGTGGTAGAGAGTTT+GGG | 0.382072 | 3.4:-86083207 | None:intergenic |
| TTGAGGTTGGAAGTTGGTGC+TGG | 0.389387 | 3.4:-86083877 | None:intergenic |
| AGCAAGGTGCACTAACTTTA+GGG | 0.395482 | 3.4:+86084107 | MS.gene013400:CDS |
| TGGTCTTTCCAGCAAGGATT+TGG | 0.396887 | 3.4:+86083927 | MS.gene013400:CDS |
| TAGATTAGCCATGATCAGTT+TGG | 0.401228 | 3.4:+86083116 | MS.gene013400:CDS |
| CACGAGCAGAGTTTCTATTT+GGG | 0.402776 | 3.4:-86083582 | None:intergenic |
| ATTTAAACTTAAATATTAGT+TGG | 0.419303 | 3.4:-86084472 | None:intergenic |
| TTTAGCTTGGAGGTCCAACC+TGG | 0.429670 | 3.4:+86083791 | MS.gene013400:intron |
| TGAACAGGTGGACACACAAT+TGG | 0.432448 | 3.4:+86084081 | MS.gene013400:intron |
| GAGGATAGAAGCACCCATTC+GGG | 0.437322 | 3.4:-86083262 | None:intergenic |
| TCAAATTGCCCAAAGGCATC+AGG | 0.463959 | 3.4:+86084183 | MS.gene013400:CDS |
| TGTTGTGTTGTTTAGCTTGG+AGG | 0.467863 | 3.4:+86083781 | MS.gene013400:intron |
| CCTGATCTCTCCATTTGATC+CGG | 0.472052 | 3.4:-86084433 | None:intergenic |
| AAACCTCTCACCGGATCAAA+TGG | 0.474986 | 3.4:+86084423 | MS.gene013400:CDS |
| CCAACCTGGAATGTAAAACT+TGG | 0.477614 | 3.4:+86083805 | MS.gene013400:CDS |
| TGGAAGAAGAGATGCTAAAA+CGG | 0.480930 | 3.4:+86083825 | MS.gene013400:CDS |
| GGAGGATAGAAGCACCCATT+CGG | 0.481217 | 3.4:-86083263 | None:intergenic |
| TAGTTGTTGTCAAAAGAAGT+AGG | 0.483476 | 3.4:-86084246 | None:intergenic |
| CGCCGTTGGTCTTTCCAGCA+AGG | 0.488220 | 3.4:+86083921 | MS.gene013400:CDS |
| GTTGGAAGTTGGTGCTGGGA+TGG | 0.488543 | 3.4:-86083872 | None:intergenic |
| CCGGATCAAATGGAGAGATC+AGG | 0.489446 | 3.4:+86084433 | MS.gene013400:CDS |
| AGTTGTTGTCAAAAGAAGTA+GGG | 0.492854 | 3.4:-86084245 | None:intergenic |
| ACCTCAATGTTTAGCGCCGT+TGG | 0.493682 | 3.4:+86083907 | MS.gene013400:CDS |
| TGAGGTGAGTGTATTGAGGT+TGG | 0.493828 | 3.4:-86083890 | None:intergenic |
| AGTGTATTGAGGTTGGAAGT+TGG | 0.502920 | 3.4:-86083883 | None:intergenic |
| TCAGCACATGAGACAACTCC+GGG | 0.503282 | 3.4:-86083652 | None:intergenic |
| TTCCGCTGCTATGATCAAGA+TGG | 0.506419 | 3.4:+86084392 | MS.gene013400:CDS |
| TCCGCTGCTATGATCAAGAT+GGG | 0.507593 | 3.4:+86084393 | MS.gene013400:CDS |
| AGATAGAACCAAACTGATCA+TGG | 0.508325 | 3.4:-86083124 | None:intergenic |
| CAAGAACCTTGTTCAGAACA+AGG | 0.510966 | 3.4:+86084272 | MS.gene013400:CDS |
| TGAGGTTGGAAGTTGGTGCT+GGG | 0.515449 | 3.4:-86083876 | None:intergenic |
| ACCACTCACTATTGAGTTGG+TGG | 0.516561 | 3.4:-86084334 | None:intergenic |
| TTGAAATTGCAGGGATGTGA+TGG | 0.527302 | 3.4:+86083508 | MS.gene013400:intron |
| CATATCAAAGGAGGCCCGAA+TGG | 0.532190 | 3.4:+86083248 | MS.gene013400:CDS |
| AGCAAATGCAGCATTTATGT+TGG | 0.537064 | 3.4:-86084148 | None:intergenic |
| ACTTGTAGAAAGTTGTGCAT+TGG | 0.538174 | 3.4:-86083166 | None:intergenic |
| ATGTGATGGATCAATTCTCT+TGG | 0.538296 | 3.4:+86083522 | MS.gene013400:CDS |
| ATATCAAAGGAGGCCCGAAT+GGG | 0.543061 | 3.4:+86083249 | MS.gene013400:CDS |
| GCCCAAAGGCATCAGGATCA+GGG | 0.544250 | 3.4:+86084190 | MS.gene013400:CDS |
| TCTCCATTTGATCCGGTGAG+AGG | 0.565633 | 3.4:-86084426 | None:intergenic |
| CCAAATAGAAACTCTGCTCG+TGG | 0.581384 | 3.4:+86083583 | MS.gene013400:CDS |
| ATAACCACTCACTATTGAGT+TGG | 0.582034 | 3.4:-86084337 | None:intergenic |
| ATCAGCACATGAGACAACTC+CGG | 0.595096 | 3.4:-86083653 | None:intergenic |
| ACATTGAGGTGAGTGTATTG+AGG | 0.600421 | 3.4:-86083894 | None:intergenic |
| GTAGGGGTCTGAAGATCAAG+AGG | 0.601828 | 3.4:-86084228 | None:intergenic |
| TGATATGGCAGTTTGTAGTG+TGG | 0.608611 | 3.4:-86083232 | None:intergenic |
| GACACACAATTGGACAAGCA+AGG | 0.609025 | 3.4:+86084091 | MS.gene013400:CDS |
| AAGAACCTTGTTCAGAACAA+GGG | 0.610050 | 3.4:+86084273 | MS.gene013400:CDS |
| ATCCTTGCTGGAAAGACCAA+CGG | 0.610155 | 3.4:-86083923 | None:intergenic |
| GGAGATATTAAACCTCTCAC+CGG | 0.610656 | 3.4:+86084414 | MS.gene013400:CDS |
| GAAGACCCTTGTTCTGAACA+AGG | 0.613843 | 3.4:-86084278 | None:intergenic |
| GCCGTAGAGAACGTATGCCC+CGG | 0.614098 | 3.4:+86083634 | MS.gene013400:CDS |
| ACTACAAACTGCCATATCAA+AGG | 0.619874 | 3.4:+86083236 | MS.gene013400:CDS |
| AGCAATCGTGGAAGAACAAG+CGG | 0.622282 | 3.4:-86083284 | None:intergenic |
| TCCGGGGCATACGTTCTCTA+CGG | 0.624550 | 3.4:-86083635 | None:intergenic |
| CCCAAAGGCATCAGGATCAG+GGG | 0.627223 | 3.4:+86084191 | MS.gene013400:CDS |
| TCCCATCTTGATCATAGCAG+CGG | 0.630563 | 3.4:-86084394 | None:intergenic |
| AGTCTGCGGCAGCAATAGCA+AGG | 0.631012 | 3.4:-86083678 | None:intergenic |
| ACCAACGGCGCTAAACATTG+AGG | 0.633810 | 3.4:-86083908 | None:intergenic |
| TTACATTGACAAAGCAATCG+TGG | 0.634168 | 3.4:-86083296 | None:intergenic |
| TACAATTGCAACAGAGTCTG+CGG | 0.641374 | 3.4:-86083692 | None:intergenic |
| GTTGTTGTCAAAAGAAGTAG+GGG | 0.641646 | 3.4:-86084244 | None:intergenic |
| GAGGCAATCAAATTGCCCAA+AGG | 0.672476 | 3.4:+86084176 | MS.gene013400:CDS |
| ACAAACTGCCATATCAAAGG+AGG | 0.679028 | 3.4:+86083239 | MS.gene013400:CDS |
| TCCACCAACTCAATAGTGAG+TGG | 0.679546 | 3.4:+86084333 | MS.gene013400:CDS |
| TGGGATGGCAGTGTTAGCAG+CGG | 0.688826 | 3.4:-86083857 | None:intergenic |
| ATGCTGCATTTGCTAGCACG+AGG | 0.690267 | 3.4:+86084157 | MS.gene013400:CDS |
| AATCGTGGAAGAACAAGCGG+AGG | 0.704179 | 3.4:-86083281 | None:intergenic |
| TTGTAGTGTGGATTTCACTG+TGG | 0.710735 | 3.4:-86083220 | None:intergenic |
| CAGCACATGAGACAACTCCG+GGG | 0.822796 | 3.4:-86083651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTTGATAAGTTTTT+AGG | + | chr3.4:86083355-86083374 | MS.gene013400:intron | 10.0% |
| !!! | TTTTTACTTATATTTAAAGT+CGG | + | chr3.4:86083998-86084017 | MS.gene013400:intron | 10.0% |
| !!! | TGATTGGTTAATTAATTCAT+TGG | - | chr3.4:86083732-86083751 | None:intergenic | 20.0% |
| ! | ATAATATGTGTGAAAAGACT+TGG | - | chr3.4:86083403-86083422 | None:intergenic | 25.0% |
| ! | TTCTATCTGTTCTCATAATA+GGG | + | chr3.4:86083139-86083158 | MS.gene013400:CDS | 25.0% |
| !! | GCTAATCTAGAACAATTTAA+AGG | - | chr3.4:86083105-86083124 | None:intergenic | 25.0% |
| AGTTGTTGTCAAAAGAAGTA+GGG | - | chr3.4:86084248-86084267 | None:intergenic | 30.0% | |
| GAAGTCTTAATTGATTGAAC+AGG | + | chr3.4:86084066-86084085 | MS.gene013400:intron | 30.0% | |
| GTTCTATCTGTTCTCATAAT+AGG | + | chr3.4:86083138-86083157 | MS.gene013400:CDS | 30.0% | |
| TAAACAACACAACATTTGCA+TGG | - | chr3.4:86083775-86083794 | None:intergenic | 30.0% | |
| TAGTTGTTGTCAAAAGAAGT+AGG | - | chr3.4:86084249-86084268 | None:intergenic | 30.0% | |
| ! | CAGGTATCGTTATATTGATT+TGG | + | chr3.4:86083959-86083978 | MS.gene013400:intron | 30.0% |
| ! | TAAAAAGTTGTTGGTCTGAA+TGG | - | chr3.4:86084305-86084324 | None:intergenic | 30.0% |
| ! | TCAGACCAACAACTTTTTAA+CGG | + | chr3.4:86084306-86084325 | MS.gene013400:CDS | 30.0% |
| !! | AAATGTTGTGTTGTTTAGCT+TGG | + | chr3.4:86083778-86083797 | MS.gene013400:intron | 30.0% |
| AAATCAGAGGAAAAAGAGCT+TGG | - | chr3.4:86084372-86084391 | None:intergenic | 35.0% | |
| AAGAACCTTGTTCAGAACAA+GGG | + | chr3.4:86084273-86084292 | MS.gene013400:CDS | 35.0% | |
| AATCAGAGGAAAAAGAGCTT+GGG | - | chr3.4:86084371-86084390 | None:intergenic | 35.0% | |
| ACTACAAACTGCCATATCAA+AGG | + | chr3.4:86083236-86083255 | MS.gene013400:CDS | 35.0% | |
| ACTTGTAGAAAGTTGTGCAT+TGG | - | chr3.4:86083169-86083188 | None:intergenic | 35.0% | |
| AGATAGAACCAAACTGATCA+TGG | - | chr3.4:86083127-86083146 | None:intergenic | 35.0% | |
| AGCAAATGCAGCATTTATGT+TGG | - | chr3.4:86084151-86084170 | None:intergenic | 35.0% | |
| ATAACCACTCACTATTGAGT+TGG | - | chr3.4:86084340-86084359 | None:intergenic | 35.0% | |
| GTCTTAATTGATTGAACAGG+TGG | + | chr3.4:86084069-86084088 | MS.gene013400:intron | 35.0% | |
| GTTGTTGTCAAAAGAAGTAG+GGG | - | chr3.4:86084247-86084266 | None:intergenic | 35.0% | |
| TACTCATTTCTCAATCGAGA+AGG | + | chr3.4:86084027-86084046 | MS.gene013400:intron | 35.0% | |
| TGGAAGAAGAGATGCTAAAA+CGG | + | chr3.4:86083825-86083844 | MS.gene013400:CDS | 35.0% | |
| TTACATTGACAAAGCAATCG+TGG | - | chr3.4:86083299-86083318 | None:intergenic | 35.0% | |
| TTGTACGCATTGAAATTGCA+GGG | + | chr3.4:86083499-86083518 | MS.gene013400:intron | 35.0% | |
| TTTGTACGCATTGAAATTGC+AGG | + | chr3.4:86083498-86083517 | MS.gene013400:intron | 35.0% | |
| ! | TAGATTAGCCATGATCAGTT+TGG | + | chr3.4:86083116-86083135 | MS.gene013400:CDS | 35.0% |
| ! | TCTTCCAAGTTTTACATTCC+AGG | - | chr3.4:86083812-86083831 | None:intergenic | 35.0% |
| !! | ATGTGATGGATCAATTCTCT+TGG | + | chr3.4:86083522-86083541 | MS.gene013400:CDS | 35.0% |
| !! | TGCACTAGCTAGATTTTGAT+TGG | - | chr3.4:86083748-86083767 | None:intergenic | 35.0% |
| AAGCAAGGTGCACTAACTTT+AGG | + | chr3.4:86084106-86084125 | MS.gene013400:CDS | 40.0% | |
| ACAAACTGCCATATCAAAGG+AGG | + | chr3.4:86083239-86083258 | MS.gene013400:CDS | 40.0% | |
| ACATTGAGGTGAGTGTATTG+AGG | - | chr3.4:86083897-86083916 | None:intergenic | 40.0% | |
| AGCAAGGTGCACTAACTTTA+GGG | + | chr3.4:86084107-86084126 | MS.gene013400:CDS | 40.0% | |
| AGTGTATTGAGGTTGGAAGT+TGG | - | chr3.4:86083886-86083905 | None:intergenic | 40.0% | |
| CAAGAACCTTGTTCAGAACA+AGG | + | chr3.4:86084272-86084291 | MS.gene013400:CDS | 40.0% | |
| CACGAGCAGAGTTTCTATTT+GGG | - | chr3.4:86083585-86083604 | None:intergenic | 40.0% | |
| CCAACCTGGAATGTAAAACT+TGG | + | chr3.4:86083805-86083824 | MS.gene013400:CDS | 40.0% | |
| GATGACACATCAAGCTTTAC+TGG | + | chr3.4:86083544-86083563 | MS.gene013400:CDS | 40.0% | |
| GGAGATATTAAACCTCTCAC+CGG | + | chr3.4:86084414-86084433 | MS.gene013400:CDS | 40.0% | |
| TACAATTGCAACAGAGTCTG+CGG | - | chr3.4:86083695-86083714 | None:intergenic | 40.0% | |
| TGATATGGCAGTTTGTAGTG+TGG | - | chr3.4:86083235-86083254 | None:intergenic | 40.0% | |
| TTCACTGTGGTAGAGAGTTT+GGG | - | chr3.4:86083210-86083229 | None:intergenic | 40.0% | |
| TTGAAATTGCAGGGATGTGA+TGG | + | chr3.4:86083508-86083527 | MS.gene013400:intron | 40.0% | |
| TTGTAGTGTGGATTTCACTG+TGG | - | chr3.4:86083223-86083242 | None:intergenic | 40.0% | |
| TTTCACTGTGGTAGAGAGTT+TGG | - | chr3.4:86083211-86083230 | None:intergenic | 40.0% | |
| ! | AAGGATTTGGTCACATTGTC+AGG | + | chr3.4:86083940-86083959 | MS.gene013400:CDS | 40.0% |
| ! | ACCAACAACTTTTTAACGGC+GGG | + | chr3.4:86084310-86084329 | MS.gene013400:CDS | 40.0% |
| ! | CCAAGTTTTACATTCCAGGT+TGG | - | chr3.4:86083808-86083827 | None:intergenic | 40.0% |
| ! | GACCAACAACTTTTTAACGG+CGG | + | chr3.4:86084309-86084328 | MS.gene013400:CDS | 40.0% |
| !! | AGAGAGTTTGGGACAAGTTT+TGG | - | chr3.4:86083199-86083218 | None:intergenic | 40.0% |
| !! | CTTCGTTGACTTATCGTATG+AGG | + | chr3.4:86083467-86083486 | MS.gene013400:intron | 40.0% |
| !! | TGTTGTGTTGTTTAGCTTGG+AGG | + | chr3.4:86083781-86083800 | MS.gene013400:intron | 40.0% |
| AAACCTCTCACCGGATCAAA+TGG | + | chr3.4:86084423-86084442 | MS.gene013400:CDS | 45.0% | |
| ACCCGCCGTTAAAAAGTTGT+TGG | - | chr3.4:86084314-86084333 | None:intergenic | 45.0% | |
| AGCAATCGTGGAAGAACAAG+CGG | - | chr3.4:86083287-86083306 | None:intergenic | 45.0% | |
| AGGATCAGGGGACAACAATT+TGG | + | chr3.4:86084203-86084222 | MS.gene013400:CDS | 45.0% | |
| ATATCAAAGGAGGCCCGAAT+GGG | + | chr3.4:86083249-86083268 | MS.gene013400:CDS | 45.0% | |
| ATCAGCACATGAGACAACTC+CGG | - | chr3.4:86083656-86083675 | None:intergenic | 45.0% | |
| ATCCTTGCTGGAAAGACCAA+CGG | - | chr3.4:86083926-86083945 | None:intergenic | 45.0% | |
| CAATGTGACCAAATCCTTGC+TGG | - | chr3.4:86083938-86083957 | None:intergenic | 45.0% | |
| CATAGCAGCGGAAAAATCAG+AGG | - | chr3.4:86084385-86084404 | None:intergenic | 45.0% | |
| CCAAATAGAAACTCTGCTCG+TGG | + | chr3.4:86083583-86083602 | MS.gene013400:CDS | 45.0% | |
| CCACGAGCAGAGTTTCTATT+TGG | - | chr3.4:86083586-86083605 | None:intergenic | 45.0% | |
| CCTGATCTCTCCATTTGATC+CGG | - | chr3.4:86084436-86084455 | None:intergenic | 45.0% | |
| GACACACAATTGGACAAGCA+AGG | + | chr3.4:86084091-86084110 | MS.gene013400:CDS | 45.0% | |
| GAGGCAATCAAATTGCCCAA+AGG | + | chr3.4:86084176-86084195 | MS.gene013400:CDS | 45.0% | |
| TCCACCAACTCAATAGTGAG+TGG | + | chr3.4:86084333-86084352 | MS.gene013400:CDS | 45.0% | |
| TCCCATCTTGATCATAGCAG+CGG | - | chr3.4:86084397-86084416 | None:intergenic | 45.0% | |
| TCCGCTGCTATGATCAAGAT+GGG | + | chr3.4:86084393-86084412 | MS.gene013400:CDS | 45.0% | |
| TGAACAGGTGGACACACAAT+TGG | + | chr3.4:86084081-86084100 | MS.gene013400:intron | 45.0% | |
| TGAGGTGAGTGTATTGAGGT+TGG | - | chr3.4:86083893-86083912 | None:intergenic | 45.0% | |
| TGGTCTTTCCAGCAAGGATT+TGG | + | chr3.4:86083927-86083946 | MS.gene013400:CDS | 45.0% | |
| TTCCGCTGCTATGATCAAGA+TGG | + | chr3.4:86084392-86084411 | MS.gene013400:CDS | 45.0% | |
| ! | GAAGACCCTTGTTCTGAACA+AGG | - | chr3.4:86084281-86084300 | None:intergenic | 45.0% |
| !! | ACCACTCACTATTGAGTTGG+TGG | - | chr3.4:86084337-86084356 | None:intergenic | 45.0% |
| !! | TCAAATTGCCCAAAGGCATC+AGG | + | chr3.4:86084183-86084202 | MS.gene013400:CDS | 45.0% |
| AATCGTGGAAGAACAAGCGG+AGG | - | chr3.4:86083284-86083303 | None:intergenic | 50.0% | |
| ACCAACGGCGCTAAACATTG+AGG | - | chr3.4:86083911-86083930 | None:intergenic | 50.0% | |
| ACCTCAATGTTTAGCGCCGT+TGG | + | chr3.4:86083907-86083926 | MS.gene013400:CDS | 50.0% | |
| CATATCAAAGGAGGCCCGAA+TGG | + | chr3.4:86083248-86083267 | MS.gene013400:CDS | 50.0% | |
| CATTCGGGCCTCCTTTGATA+TGG | - | chr3.4:86083250-86083269 | None:intergenic | 50.0% | |
| CCGGATCAAATGGAGAGATC+AGG | + | chr3.4:86084433-86084452 | MS.gene013400:CDS | 50.0% | |
| GTAGGGGTCTGAAGATCAAG+AGG | - | chr3.4:86084231-86084250 | None:intergenic | 50.0% | |
| TCAGCACATGAGACAACTCC+GGG | - | chr3.4:86083655-86083674 | None:intergenic | 50.0% | |
| TCTCCATTTGATCCGGTGAG+AGG | - | chr3.4:86084429-86084448 | None:intergenic | 50.0% | |
| ! | ATGCTGCATTTGCTAGCACG+AGG | + | chr3.4:86084157-86084176 | MS.gene013400:CDS | 50.0% |
| !! | GAGGATAGAAGCACCCATTC+GGG | - | chr3.4:86083265-86083284 | None:intergenic | 50.0% |
| !! | GGAGGATAGAAGCACCCATT+CGG | - | chr3.4:86083266-86083285 | None:intergenic | 50.0% |
| !! | TGAGGTTGGAAGTTGGTGCT+GGG | - | chr3.4:86083879-86083898 | None:intergenic | 50.0% |
| !! | TTGAGGTTGGAAGTTGGTGC+TGG | - | chr3.4:86083880-86083899 | None:intergenic | 50.0% |
| !! | TTTAGCTTGGAGGTCCAACC+TGG | + | chr3.4:86083791-86083810 | MS.gene013400:intron | 50.0% |
| AGTCTGCGGCAGCAATAGCA+AGG | - | chr3.4:86083681-86083700 | None:intergenic | 55.0% | |
| CAGCACATGAGACAACTCCG+GGG | - | chr3.4:86083654-86083673 | None:intergenic | 55.0% | |
| CCCCTGATCCTGATGCCTTT+GGG | - | chr3.4:86084194-86084213 | None:intergenic | 55.0% | |
| TCCCCTGATCCTGATGCCTT+TGG | - | chr3.4:86084195-86084214 | None:intergenic | 55.0% | |
| TCCGGGGCATACGTTCTCTA+CGG | - | chr3.4:86083638-86083657 | None:intergenic | 55.0% | |
| TGGGATGGCAGTGTTAGCAG+CGG | - | chr3.4:86083860-86083879 | None:intergenic | 55.0% | |
| !! | CCCAAAGGCATCAGGATCAG+GGG | + | chr3.4:86084191-86084210 | MS.gene013400:CDS | 55.0% |
| !! | GCCCAAAGGCATCAGGATCA+GGG | + | chr3.4:86084190-86084209 | MS.gene013400:CDS | 55.0% |
| !! | GTTGGAAGTTGGTGCTGGGA+TGG | - | chr3.4:86083875-86083894 | None:intergenic | 55.0% |
| !! | TGCCCAAAGGCATCAGGATC+AGG | + | chr3.4:86084189-86084208 | MS.gene013400:CDS | 55.0% |
| GCCGTAGAGAACGTATGCCC+CGG | + | chr3.4:86083634-86083653 | MS.gene013400:CDS | 60.0% | |
| !! | CGCCGTTGGTCTTTCCAGCA+AGG | + | chr3.4:86083921-86083940 | MS.gene013400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86083096 | 86084479 | 86083096 | ID=MS.gene013400 |
| chr3.4 | mRNA | 86083096 | 86084479 | 86083096 | ID=MS.gene013400.t1;Parent=MS.gene013400 |
| chr3.4 | exon | 86083096 | 86083314 | 86083096 | ID=MS.gene013400.t1.exon1;Parent=MS.gene013400.t1 |
| chr3.4 | CDS | 86083096 | 86083314 | 86083096 | ID=cds.MS.gene013400.t1;Parent=MS.gene013400.t1 |
| chr3.4 | exon | 86083520 | 86083711 | 86083520 | ID=MS.gene013400.t1.exon2;Parent=MS.gene013400.t1 |
| chr3.4 | CDS | 86083520 | 86083711 | 86083520 | ID=cds.MS.gene013400.t1;Parent=MS.gene013400.t1 |
| chr3.4 | exon | 86083796 | 86083961 | 86083796 | ID=MS.gene013400.t1.exon3;Parent=MS.gene013400.t1 |
| chr3.4 | CDS | 86083796 | 86083961 | 86083796 | ID=cds.MS.gene013400.t1;Parent=MS.gene013400.t1 |
| chr3.4 | exon | 86084088 | 86084479 | 86084088 | ID=MS.gene013400.t1.exon4;Parent=MS.gene013400.t1 |
| chr3.4 | CDS | 86084088 | 86084479 | 86084088 | ID=cds.MS.gene013400.t1;Parent=MS.gene013400.t1 |
| Gene Sequence |
| Protein sequence |
