AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013817

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013817.t1 MTR_3g088150 96.939 490 14 1 1 489 1 490 0.0 978
MS.gene013817.t1 MTR_1g029840 78.351 485 105 0 5 489 4 488 0.0 811
MS.gene013817.t1 MTR_1g029840 77.755 481 107 0 9 489 8 488 0.0 800
MS.gene013817.t1 MTR_8g094600 66.804 485 161 0 5 489 57 541 0.0 705
MS.gene013817.t1 MTR_8g076480 47.335 469 247 0 14 482 6 474 5.84e-165 475
MS.gene013817.t1 MTR_2g097950 46.764 479 252 1 12 487 15 493 5.48e-159 461
MS.gene013817.t1 MTR_4g065040 50.881 454 220 1 21 471 9 462 8.40e-146 427
MS.gene013817.t1 MTR_2g097950 44.328 476 233 2 12 487 15 458 1.20e-143 420
MS.gene013817.t1 MTR_1222s0010 36.387 382 231 5 18 395 6 379 6.58e-78 258
MS.gene013817.t1 MTR_1314s0010 35.799 338 207 4 117 446 1 336 6.37e-71 229
MS.gene013817.t1 MTR_3g078550 29.954 434 285 9 26 446 28 455 4.32e-40 150
MS.gene013817.t1 MTR_3g078550 29.954 434 285 9 26 446 58 485 8.66e-40 150
MS.gene013817.t1 MTR_4g106510 29.017 417 282 9 39 446 74 485 3.07e-39 149
MS.gene013817.t1 MTR_2g034160 24.777 448 307 8 35 466 106 539 5.22e-39 149
MS.gene013817.t1 MTR_3g078490 29.263 434 288 10 26 446 88 515 1.13e-37 145
MS.gene013817.t1 MTR_2g067660 27.874 348 242 8 113 454 178 522 7.27e-33 131
MS.gene013817.t1 MTR_8g064170 26.773 437 302 11 21 447 104 532 5.61e-30 123
MS.gene013817.t1 MTR_4g107040 26.770 452 299 13 13 447 99 535 6.73e-29 120
MS.gene013817.t1 MTR_8g083530 28.070 342 230 9 116 447 159 494 2.30e-27 115
MS.gene013817.t1 MTR_3g078170 27.212 452 297 14 13 447 97 533 4.10e-27 114
MS.gene013817.t1 MTR_4g131180 26.244 442 301 11 22 447 53 485 3.26e-26 111
MS.gene013817.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene013817.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene013817.t1 MTR_6g086340 27.515 338 235 8 116 446 156 490 8.09e-24 104
MS.gene013817.t1 MTR_1g014320 25.328 458 315 12 6 447 39 485 9.41e-24 104
MS.gene013817.t1 MTR_4g131180 26.119 402 273 10 22 407 53 446 7.77e-23 101
MS.gene013817.t1 MTR_8g064170 24.773 440 287 13 15 447 98 500 8.36e-22 98.6
MS.gene013817.t1 MTR_3g078490 29.310 290 196 6 26 308 58 345 4.82e-19 89.0
MS.gene013817.t1 MTR_2g009750 28.710 310 195 11 114 407 147 446 2.08e-18 88.2
MS.gene013817.t1 MTR_2g009750 28.710 310 195 11 114 407 146 445 2.62e-18 88.2
MS.gene013817.t1 MTR_2g009750 28.710 310 196 11 114 407 147 447 3.01e-18 87.8
MS.gene013817.t1 MTR_4g093170 27.036 307 205 8 114 407 174 474 3.43e-18 87.8
MS.gene013817.t1 MTR_3g078170 27.049 366 237 13 13 361 97 449 6.85e-18 86.3
MS.gene013817.t1 MTR_8g083520 26.163 344 201 10 116 447 150 452 3.40e-17 84.3
MS.gene013817.t1 MTR_8g083520 26.163 344 201 10 116 447 70 372 3.84e-17 83.6
MS.gene013817.t1 MTR_4g020710 48.684 76 39 0 294 369 8 83 6.14e-17 77.8
MS.gene013817.t1 MTR_4g020720 39.200 125 67 4 184 302 116 237 3.07e-16 79.3
MS.gene013817.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.55e-14 75.9
MS.gene013817.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.75e-14 75.9
MS.gene013817.t1 MTR_8g083530 35.762 151 88 5 116 260 159 306 1.91e-13 72.0
MS.gene013817.t1 MTR_1399s0020 27.830 212 143 5 253 462 145 348 3.19e-13 71.2
MS.gene013817.t1 MTR_2g042330 25.685 292 194 12 117 392 155 439 4.67e-13 71.6
MS.gene013817.t1 MTR_1690s0010 27.801 241 153 10 88 313 111 345 5.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013817.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene013817.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene013817.t1 AT4G34240 64.854 478 168 0 12 489 70 547 0.0 649
MS.gene013817.t1 AT4G34240 64.854 478 168 0 12 489 55 532 0.0 648
MS.gene013817.t1 AT1G44170 70.560 411 121 0 77 487 9 419 0.0 634
MS.gene013817.t1 AT4G34240 67.574 404 131 0 86 489 2 405 0.0 569
MS.gene013817.t1 AT4G36250 47.826 460 237 1 15 471 6 465 4.95e-163 470
MS.gene013817.t1 AT4G34240 66.978 321 106 0 12 332 70 390 3.69e-151 436
MS.gene013817.t1 AT3G66658 27.146 431 296 6 35 451 106 532 9.44e-44 162
MS.gene013817.t1 AT3G66658 27.361 413 282 6 35 433 106 514 1.98e-43 162
MS.gene013817.t1 AT1G74920 28.810 420 284 10 39 448 69 483 9.82e-42 155
MS.gene013817.t1 AT1G74920 28.810 420 284 10 39 448 74 488 1.17e-41 155
MS.gene013817.t1 AT3G48170 27.338 417 289 9 39 446 74 485 1.40e-36 141
MS.gene013817.t1 AT1G23800 27.455 448 301 13 13 447 89 525 1.08e-33 134
MS.gene013817.t1 AT1G79440 29.912 341 228 10 113 446 184 520 1.14e-33 134
MS.gene013817.t1 AT3G48000 26.549 452 300 14 13 447 93 529 7.22e-29 120
MS.gene013817.t1 AT3G24503 27.729 339 235 7 116 447 157 492 2.68e-27 115
MS.gene013817.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene013817.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene013817.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene013817.t1 AT2G24270 28.707 317 217 7 117 430 198 508 1.00e-24 107
MS.gene013817.t1 AT2G14170 27.378 347 228 12 116 446 248 586 5.74e-18 87.4
MS.gene013817.t1 AT2G14170 27.378 347 228 12 116 446 139 477 6.43e-18 86.7
MS.gene013817.t1 AT1G23800 30.078 256 155 9 13 252 89 336 2.83e-17 84.3
MS.gene013817.t1 AT2G14170 27.273 308 203 10 114 407 246 546 1.09e-16 83.2
MS.gene013817.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2
MS.gene013817.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2

Find 118 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCAATTCTGTCTTTA+AGG 0.114075 3.1:+71184579 None:intergenic
GGGAAAATTTCATACCAATT+TGG 0.160031 3.1:+71184673 None:intergenic
GTTTCTGGCAAGGTTGTTTA+TGG 0.170486 3.1:-71184460 MS.gene013817:CDS
TCACTGCTGGCGAACTTATT+AGG 0.192129 3.1:-71185496 MS.gene013817:CDS
GGAAAATTTCATACCAATTT+GGG 0.208738 3.1:+71184674 None:intergenic
ACAGAATTGGAAAGCTTCTT+TGG 0.227872 3.1:-71184571 MS.gene013817:CDS
TTGGACGACGAGAAGGTTTC+TGG 0.237632 3.1:-71184475 MS.gene013817:CDS
TGGTTCATACTTTGCCATTT+GGG 0.248058 3.1:-71183867 MS.gene013817:CDS
GTGGTTCATACTTTGCCATT+TGG 0.266390 3.1:-71183868 MS.gene013817:CDS
TTTGTTGTTATAACGTAATC+AGG 0.304335 3.1:+71184707 None:intergenic
CACTGCTGGCGAACTTATTA+GGG 0.310991 3.1:-71185495 MS.gene013817:CDS
GATAAATCATTGGATTCTAT+TGG 0.315485 3.1:+71184541 None:intergenic
ACAGCTAGACGGATAATTTC+AGG 0.342418 3.1:-71184767 MS.gene013817:CDS
ACACCTTACACCAGTCGTTC+TGG 0.352826 3.1:-71185150 MS.gene013817:CDS
CTAGTCGCCGGCGATGTTAC+TGG 0.358446 3.1:-71183691 MS.gene013817:CDS
GGATTCAAATGTCAATTTAG+AGG 0.363970 3.1:-71185099 MS.gene013817:intron
CTGAGGGTGAGCTTTAATTC+TGG 0.376691 3.1:-71187657 MS.gene013817:CDS
TTCTAACCACTTTGCTCGCT+TGG 0.378374 3.1:-71184506 MS.gene013817:CDS
TGATGCCTTAAAGACAGAAT+TGG 0.379258 3.1:-71184584 MS.gene013817:CDS
AACACTACACCAAGTGGTTC+AGG 0.380052 3.1:+71186002 None:intergenic
TCCAGCCTCGTCTTCACTGC+TGG 0.400434 3.1:-71185509 MS.gene013817:CDS
TTCTGCTTTGTATCAGTGTA+AGG 0.401680 3.1:+71183727 None:intergenic
GGAGTTGGTGACAGTGGAAT+GGG 0.406759 3.1:-71183844 MS.gene013817:CDS
GAAGATGGTTGATGAACAAC+AGG 0.411988 3.1:-71187586 MS.gene013817:CDS
GGGAGTTGGTGACAGTGGAA+TGG 0.415308 3.1:-71183845 MS.gene013817:CDS
CTGTCCCTTGATCCAGTTGT+TGG 0.425314 3.1:-71185580 MS.gene013817:CDS
CACAATGCGCGATAAATCAT+TGG 0.432655 3.1:+71184531 None:intergenic
TACAAATGACAACAAGTTCA+AGG 0.442505 3.1:-71184048 MS.gene013817:CDS
GCTGCTATAGCTCCAACAAC+TGG 0.444023 3.1:+71185568 None:intergenic
ACACCAGTCGTTCTGGAGCT+TGG 0.446970 3.1:-71185143 MS.gene013817:CDS
ATAATGAGTGAGGAGATCTT+TGG 0.458834 3.1:-71184289 MS.gene013817:CDS
TGCTCGCTTGGTAAAGATGT+TGG 0.468945 3.1:-71184494 MS.gene013817:CDS
TAGCAATAGTATAAAATGTC+GGG 0.472828 3.1:-71187741 None:intergenic
TTTGTGAAGAATGTTTCTGC+TGG 0.473206 3.1:-71184020 MS.gene013817:CDS
GGTACTATTTCAGCTGAAGA+AGG 0.475298 3.1:+71186023 None:intergenic
ACAATGGATGGCCCCAGAAA+AGG 0.476780 3.1:-71186181 MS.gene013817:intron
ACATTTGAATCCACAACAGT+TGG 0.479478 3.1:+71185110 None:intergenic
GGTTGTTTATGGAGGTGAAA+AGG 0.487907 3.1:-71184449 MS.gene013817:CDS
CTGCATTGTTGCAACAAAAG+TGG 0.494247 3.1:-71185417 MS.gene013817:CDS
CTTGGAACAGGTGAACAAGC+TGG 0.495328 3.1:-71184126 MS.gene013817:intron
CGGAGAAGCGGCGTCGTCGT+TGG 0.495817 3.1:-71187688 MS.gene013817:CDS
TAGCTCCAACAACTGGATCA+AGG 0.496212 3.1:+71185575 None:intergenic
TGGAGCGTCTAATACAATAG+TGG 0.501825 3.1:+71184324 None:intergenic
GGTTCATACTTTGCCATTTG+GGG 0.508394 3.1:-71183866 MS.gene013817:CDS
GACGGATAATTTCAGGAAAG+TGG 0.508972 3.1:-71184760 MS.gene013817:CDS
TTACGGGTGATGCATCGATA+AGG 0.514070 3.1:-71183756 MS.gene013817:CDS
GCTCCAGAACGACTGGTGTA+AGG 0.516414 3.1:+71185147 None:intergenic
GTAAATAAATATGCAGCAAG+TGG 0.517979 3.1:+71184068 None:intergenic
GCCAGCAGTGAAGACGAGGC+TGG 0.518366 3.1:+71185508 None:intergenic
AACGTAATCAGGAGAAATGC+AGG 0.519634 3.1:+71184718 None:intergenic
AGGAAAATCTCCAACTGTTG+TGG 0.520349 3.1:-71185120 MS.gene013817:CDS
ATCTATAAGAGTTGTGGAGG+GGG 0.520366 3.1:-71185455 MS.gene013817:CDS
CAGAAGAAGGTGGTGTTTGA+CGG 0.522711 3.1:-71187708 MS.gene013817:CDS
AGCGGCGTCGTCGTTGGTGA+AGG 0.523107 3.1:-71187682 MS.gene013817:CDS
CCTCCAAGCTCCAGAACGAC+TGG 0.525093 3.1:+71185140 None:intergenic
TTTGTGAGTAAAAGCGTCAA+AGG 0.526185 3.1:+71183801 None:intergenic
GGAAAGTGGTGCTGTAACAA+TGG 0.528505 3.1:-71184746 MS.gene013817:CDS
GGGTGAAGAGTCACAGAAGA+AGG 0.530603 3.1:-71187721 MS.gene013817:CDS
CTCATCTATAAGAGTTGTGG+AGG 0.535901 3.1:-71185458 MS.gene013817:CDS
CCAGTCGTTCTGGAGCTTGG+AGG 0.536552 3.1:-71185140 MS.gene013817:CDS
GTTGTTGGAGCTATAGCAGC+CGG 0.541671 3.1:-71185565 MS.gene013817:CDS
TGCTTTGTATCAGTGTAAGG+CGG 0.541950 3.1:+71183730 None:intergenic
GTAAGACACGAAGTTATGAA+TGG 0.543765 3.1:-71187635 MS.gene013817:CDS
AGCTCCAACAACTGGATCAA+GGG 0.544547 3.1:+71185576 None:intergenic
TCTGGCAAGGTTGTTTATGG+AGG 0.544720 3.1:-71184457 MS.gene013817:CDS
TTATGAATGGAGAGTATCGC+AGG 0.547189 3.1:-71187622 MS.gene013817:CDS
TACAAAGCAGAAATTGATGA+AGG 0.548509 3.1:-71183716 MS.gene013817:CDS
TTTATTCTTACCGTGATGAT+GGG 0.548703 3.1:+71184256 None:intergenic
GTGAAGAATGTTTCTGCTGG+GGG 0.549524 3.1:-71184017 MS.gene013817:CDS
TGCATTGTTGCAACAAAAGT+GGG 0.550398 3.1:-71185416 MS.gene013817:CDS
TAGTGTTAGTCATCTCTGCT+TGG 0.552108 3.1:-71185986 MS.gene013817:CDS
TAACTCATCTATAAGAGTTG+TGG 0.553446 3.1:-71185461 MS.gene013817:CDS
CGTCGTTGGTGAAGGAGCTG+AGG 0.553449 3.1:-71187674 MS.gene013817:CDS
CGACGAGAAGGTTTCTGGCA+AGG 0.555363 3.1:-71184470 MS.gene013817:CDS
TTTCAAGCGGTGGTTTAGCA+AGG 0.558890 3.1:+71187535 None:intergenic
CTCATTATCAGAGAATCTTG+TGG 0.559354 3.1:+71184304 None:intergenic
TTGTGAAGAATGTTTCTGCT+GGG 0.560631 3.1:-71184019 MS.gene013817:CDS
TTGATGAAGGCTCTAGTCGC+CGG 0.564772 3.1:-71183703 MS.gene013817:CDS
GAGGCTGGAGCAATTTCTGA+TGG 0.566074 3.1:+71185523 None:intergenic
GAAAATTTCATACCAATTTG+GGG 0.571184 3.1:+71184675 None:intergenic
CGCTGAAGGAATTGAAACAA+TGG 0.574396 3.1:-71186197 MS.gene013817:CDS
GGAGCGTCTAATACAATAGT+GGG 0.580198 3.1:+71184325 None:intergenic
GTGGAATGGGTGCATACCAT+GGG 0.581183 3.1:-71183831 MS.gene013817:CDS
GCTTTGTATCAGTGTAAGGC+GGG 0.584751 3.1:+71183731 None:intergenic
GTTCATACTTTGCCATTTGG+GGG 0.589580 3.1:-71183865 MS.gene013817:CDS
AAAGATGTTGGACGACGAGA+AGG 0.593143 3.1:-71184482 MS.gene013817:CDS
GAAGGAATTGAAACAATGGA+TGG 0.595708 3.1:-71186193 MS.gene013817:CDS
ACCGTGATGATGGGAAGCAA+TGG 0.595840 3.1:+71184265 None:intergenic
CAGGTAATGGAAAAGTGGGA+CGG 0.603039 3.1:-71185196 MS.gene013817:CDS
CTCATGTGAAGTCACGCTGA+AGG 0.604871 3.1:-71186211 MS.gene013817:CDS
TCATCTATAAGAGTTGTGGA+GGG 0.608439 3.1:-71185457 MS.gene013817:CDS
GTCGTTGGTGAAGGAGCTGA+GGG 0.610188 3.1:-71187673 MS.gene013817:CDS
TTTACTAGGTTACAGCTAGA+CGG 0.610366 3.1:-71184778 MS.gene013817:intron
AGCTTCGATTTGATCAACGC+AGG 0.611901 3.1:-71184098 MS.gene013817:CDS
GGTGGTGTTTGACGGAGAAG+CGG 0.613325 3.1:-71187700 MS.gene013817:CDS
TAGACAACAGTTTCAAGCGG+TGG 0.617970 3.1:+71187525 None:intergenic
TCCATTGCTTCCCATCATCA+CGG 0.625141 3.1:-71184266 MS.gene013817:intron
GAACTTATTAGGGAGGTACA+TGG 0.626641 3.1:-71185485 MS.gene013817:CDS
AAAATTTCATACCAATTTGG+GGG 0.628857 3.1:+71184676 None:intergenic
GTTCGCCAGCAGTGAAGACG+AGG 0.630975 3.1:+71185504 None:intergenic
AACAACACCAGTAACATCGC+CGG 0.631565 3.1:+71183684 None:intergenic
CATCTATAAGAGTTGTGGAG+GGG 0.632599 3.1:-71185456 MS.gene013817:CDS
GAAATAGTACCTGAACCACT+TGG 0.636077 3.1:-71186011 MS.gene013817:CDS
AGATTCTCTGATAATGAGTG+AGG 0.639886 3.1:-71184299 MS.gene013817:CDS
ATGACTAACACTACACCAAG+TGG 0.646296 3.1:+71185996 None:intergenic
CAATGCAGTAGTTTCATCAA+CGG 0.649582 3.1:+71185432 None:intergenic
TGTGAAGAATGTTTCTGCTG+GGG 0.658052 3.1:-71184018 MS.gene013817:CDS
TGCTGGCGAACTTATTAGGG+AGG 0.664145 3.1:-71185492 MS.gene013817:CDS
AAAAGTGGGACGGATAGTGA+TGG 0.666797 3.1:-71185186 MS.gene013817:CDS
AGTGGGACGGATAGTGATGG+CGG 0.669702 3.1:-71185183 MS.gene013817:CDS
AGTGGAATGGGTGCATACCA+TGG 0.672625 3.1:-71183832 MS.gene013817:CDS
TCTTTACCAAGCGAGCAAAG+TGG 0.678259 3.1:+71184500 None:intergenic
GCTTGAAACTGTTGTCTACG+AGG 0.679853 3.1:-71187520 MS.gene013817:intron
TGAAGAGTCACAGAAGAAGG+TGG 0.679895 3.1:-71187718 MS.gene013817:CDS
TATAGCAGCCGGAAACGCCG+TGG 0.683688 3.1:-71185554 MS.gene013817:CDS
TCGTAGACAACAGTTTCAAG+CGG 0.691579 3.1:+71187522 None:intergenic
CGTCAAAGGAGAATTTCCCA+TGG 0.693948 3.1:+71183815 None:intergenic
ATGCATCACCCGTAAAACCA+CGG 0.701105 3.1:+71183764 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAACTTAAAATATTTTT+GGG - chr3.1:71184919-71184938 MS.gene013817:intron 10.0%
!!! TCATATATATATGATTTTTA+TGG - chr3.1:71183915-71183934 MS.gene013817:intron 10.0%
!!! TTTTATGTTTTCTTTAATAA+AGG - chr3.1:71184151-71184170 MS.gene013817:intron 10.0%
!! TAGATTATTAAAGAAACTAA+AGG + chr3.1:71185745-71185764 None:intergenic 15.0%
!!! GATTCAACTTAAAATATTTT+TGG - chr3.1:71184918-71184937 MS.gene013817:intron 15.0%
!!! TAAAGTTAAATTGTTTTCAA+TGG + chr3.1:71186386-71186405 None:intergenic 15.0%
!!! TAAATTAATTTGTGTTTACT+AGG - chr3.1:71186594-71186613 MS.gene013817:intron 15.0%
!!! TATATCTAAATCAATTTGTT+AGG - chr3.1:71184418-71184437 MS.gene013817:intron 15.0%
!! AAAAATAAACTTTGATTGAC+TGG - chr3.1:71184591-71184610 MS.gene013817:intron 20.0%
!! AAAATTCACAATACCAATAA+TGG + chr3.1:71186093-71186112 None:intergenic 20.0%
!! AAGATATCGTGAAAAATTTA+TGG + chr3.1:71185573-71185592 None:intergenic 20.0%
!! AGTTCCTTTAATAATATTTC+AGG - chr3.1:71185317-71185336 MS.gene013817:intron 20.0%
!! TACAAATGTTACAAAATGTT+CGG + chr3.1:71185017-71185036 None:intergenic 20.0%
!! TTAAGTCAATAATGAGTTAA+GGG + chr3.1:71186577-71186596 None:intergenic 20.0%
!! TTAGCCTGAAATATTATTAA+AGG + chr3.1:71185324-71185343 None:intergenic 20.0%
!! TTTAAAAATTTAGTATCCCT+TGG - chr3.1:71184942-71184961 MS.gene013817:intron 20.0%
!! TTTAAGTCAATAATGAGTTA+AGG + chr3.1:71186578-71186597 None:intergenic 20.0%
!!! AAAAGCATTTTTCTTTTTGA+AGG + chr3.1:71184201-71184220 None:intergenic 20.0%
!!! AAAAGGTGTATGTAAAATAA+GGG - chr3.1:71184557-71184576 MS.gene013817:CDS 20.0%
!!! AAAGCATTTTTCTTTTTGAA+GGG + chr3.1:71184200-71184219 None:intergenic 20.0%
!!! ATAAACATCATAAGTTTTCA+AGG - chr3.1:71184027-71184046 MS.gene013817:CDS 20.0%
!!! ATGGTTATGAATTGTTATTT+TGG - chr3.1:71186046-71186065 MS.gene013817:CDS 20.0%
!!! ATTAAATTTTTCATCCAATC+AGG - chr3.1:71186485-71186504 MS.gene013817:intron 20.0%
!!! GTAACTAAACAAACATATTT+TGG - chr3.1:71185034-71185053 MS.gene013817:intron 20.0%
!!! GTTACTCTATTTTGAATTTA+TGG + chr3.1:71184995-71185014 None:intergenic 20.0%
!!! TAAAAGGTGTATGTAAAATA+AGG - chr3.1:71184556-71184575 MS.gene013817:CDS 20.0%
!!! TAAGTAATTACTTGATTTTC+AGG - chr3.1:71186171-71186190 MS.gene013817:intron 20.0%
!!! TATGTTTTCTTTAATAAAGG+AGG - chr3.1:71184154-71184173 MS.gene013817:intron 20.0%
!!! TATTCTTGAGATTTTTCATT+TGG - chr3.1:71184056-71184075 MS.gene013817:CDS 20.0%
!!! TATTTTGAATTTATGGAAAG+CGG + chr3.1:71184988-71185007 None:intergenic 20.0%
!!! TGTATCCAATTTAAAACAAT+GGG - chr3.1:71187210-71187229 MS.gene013817:intron 20.0%
!!! TTCACCTTCTTTTTTTTTTA+CGG - chr3.1:71184219-71184238 MS.gene013817:intron 20.0%
!!! TTCTGGAAAATATAAGTAAA+AGG - chr3.1:71184540-71184559 MS.gene013817:CDS 20.0%
!!! TTGTATCCAATTTAAAACAA+TGG - chr3.1:71187209-71187228 MS.gene013817:intron 20.0%
!!! TTTACCTTTTGTTATACAAA+TGG - chr3.1:71185614-71185633 MS.gene013817:intron 20.0%
! AAAATTTCATACCAATTTGG+GGG + chr3.1:71186713-71186732 None:intergenic 25.0%
! AATCAAAGTAATTGTATCGT+CGG + chr3.1:71184107-71184126 None:intergenic 25.0%
! AGCAACTTAAACATGAAATT+AGG + chr3.1:71183894-71183913 None:intergenic 25.0%
! ATAAGTAACATTGCATGATA+AGG + chr3.1:71187472-71187491 None:intergenic 25.0%
! ATAATACTTTCTTTCTTGCT+TGG - chr3.1:71187242-71187261 MS.gene013817:intron 25.0%
! CACTATATATCGAAAACTAT+TGG + chr3.1:71184471-71184490 None:intergenic 25.0%
! GAAAATTTCATACCAATTTG+GGG + chr3.1:71186714-71186733 None:intergenic 25.0%
! GATAAATCATTGGATTCTAT+TGG + chr3.1:71186848-71186867 None:intergenic 25.0%
! GGAAAATTTCATACCAATTT+GGG + chr3.1:71186715-71186734 None:intergenic 25.0%
! TAAAATATTGACGTCATACA+AGG + chr3.1:71184136-71184155 None:intergenic 25.0%
! TAAGCCATTTGTATAACAAA+AGG + chr3.1:71185621-71185640 None:intergenic 25.0%
! TAAGTCAATAATGAGTTAAG+GGG + chr3.1:71186576-71186595 None:intergenic 25.0%
! TATACTATTCTCAACTACAT+TGG - chr3.1:71184896-71184915 MS.gene013817:intron 25.0%
! TGACTGGAAAATAAAAAAGA+AGG + chr3.1:71186524-71186543 None:intergenic 25.0%
! TGTTCCGTAAAAAAAAAAGA+AGG + chr3.1:71184226-71184245 None:intergenic 25.0%
! TTAATAAGTCAATCCAAACA+TGG + chr3.1:71186325-71186344 None:intergenic 25.0%
!! ACAAAATTTTGTATACAGGT+TGG - chr3.1:71185993-71186012 MS.gene013817:CDS 25.0%
!! GTATCCAATTTAAAACAATG+GGG - chr3.1:71187211-71187230 MS.gene013817:intron 25.0%
!! TTTTATATACTGCAATGCAA+TGG - chr3.1:71187005-71187024 MS.gene013817:intron 25.0%
!!! ATTACTTGATTTTCAGGTAA+TGG - chr3.1:71186177-71186196 MS.gene013817:intron 25.0%
!!! CAATTTAGAGGTATTGATTA+AGG - chr3.1:71186299-71186318 MS.gene013817:intron 25.0%
!!! CATAATAAATTGGTTTGGTT+TGG - chr3.1:71184381-71184400 MS.gene013817:intron 25.0%
!!! TGTTTTTTACAATGAGTAGT+TGG - chr3.1:71184627-71184646 MS.gene013817:intron 25.0%
!!! TTTGTTGTTATAACGTAATC+AGG + chr3.1:71186682-71186701 None:intergenic 25.0%
AATACAACTAAGCAATTGAC+AGG - chr3.1:71185060-71185079 MS.gene013817:intron 30.0%
AATCACGTAAATACAAGTCA+CGG - chr3.1:71184284-71184303 MS.gene013817:CDS 30.0%
AATCCTAATAGCCATAACTT+TGG - chr3.1:71184670-71184689 MS.gene013817:intron 30.0%
ACTTCCTAGGCATAATAAAT+TGG - chr3.1:71184371-71184390 MS.gene013817:intron 30.0%
ATTGAGTGAAATGAAACCAA+GGG + chr3.1:71184961-71184980 None:intergenic 30.0%
CAAACCAATTTATTATGCCT+AGG + chr3.1:71184378-71184397 None:intergenic 30.0%
CCATTTAGTAAAAAGGAAAG+AGG + chr3.1:71184848-71184867 None:intergenic 30.0%
CCTACTAAACTTGAATTAAG+AGG + chr3.1:71186985-71187004 None:intergenic 30.0%
CTAGGCATAATAAATTGGTT+TGG - chr3.1:71184376-71184395 MS.gene013817:intron 30.0%
GATAAGGATATATGCATTCA+TGG + chr3.1:71187456-71187475 None:intergenic 30.0%
GGATTCAAATGTCAATTTAG+AGG - chr3.1:71186287-71186306 MS.gene013817:intron 30.0%
GGGAAAATTTCATACCAATT+TGG + chr3.1:71186716-71186735 None:intergenic 30.0%
GTAAATAAATATGCAGCAAG+TGG + chr3.1:71187321-71187340 None:intergenic 30.0%
GTCTTTGTGTATCTAATGTT+TGG - chr3.1:71186761-71186780 MS.gene013817:intron 30.0%
TAACTCAAATACAACCAACA+AGG + chr3.1:71185712-71185731 None:intergenic 30.0%
TAACTCATCTATAAGAGTTG+TGG - chr3.1:71185925-71185944 MS.gene013817:intron 30.0%
TACAAAGCAGAAATTGATGA+AGG - chr3.1:71187670-71187689 MS.gene013817:CDS 30.0%
TACAAATGACAACAAGTTCA+AGG - chr3.1:71187338-71187357 MS.gene013817:intron 30.0%
TATTGTGTCAACCAAAGTTA+TGG + chr3.1:71184684-71184703 None:intergenic 30.0%
TCATATTGCTTTCATGTGTA+AGG + chr3.1:71186432-71186451 None:intergenic 30.0%
TGATATAACTAGTTACTGAC+TGG + chr3.1:71186540-71186559 None:intergenic 30.0%
TTAGTAAAAAGGAAAGAGGT+TGG + chr3.1:71184844-71184863 None:intergenic 30.0%
TTTATTCTTACCGTGATGAT+GGG + chr3.1:71187133-71187152 None:intergenic 30.0%
! ATTTAGAACTCTTAACAACG+AGG + chr3.1:71186737-71186756 None:intergenic 30.0%
! ATTTGGAGTCACTATTATGA+TGG - chr3.1:71184073-71184092 MS.gene013817:CDS 30.0%
! CCTCTTAATTCAAGTTTAGT+AGG - chr3.1:71186982-71187001 MS.gene013817:intron 30.0%
! CCTCTTTCCTTTTTACTAAA+TGG - chr3.1:71184845-71184864 MS.gene013817:intron 30.0%
! GGGTAAAATAAACCTTTTCT+GGG + chr3.1:71185220-71185239 None:intergenic 30.0%
! GGTAAAATAAACCTTTTCTG+GGG + chr3.1:71185219-71185238 None:intergenic 30.0%
! TGGGACAAAATTTTGTATAC+AGG - chr3.1:71185989-71186008 MS.gene013817:CDS 30.0%
! TTTAGAACTCTTAACAACGA+GGG + chr3.1:71186736-71186755 None:intergenic 30.0%
! TTTTATTCTTACCGTGATGA+TGG + chr3.1:71187134-71187153 None:intergenic 30.0%
!!! ATGTACTTTGTTTTGCAGAT+TGG - chr3.1:71185140-71185159 MS.gene013817:CDS 30.0%
!!! ATTTTCAGGTAATGGAAAAG+TGG - chr3.1:71186185-71186204 MS.gene013817:CDS 30.0%
!!! TTTTCAGGTAATGGAAAAGT+GGG - chr3.1:71186186-71186205 MS.gene013817:CDS 30.0%
AAGTAATTGTATCGTCGGAA+CGG + chr3.1:71184102-71184121 None:intergenic 35.0%
ACAGAATTGGAAAGCTTCTT+TGG - chr3.1:71186815-71186834 MS.gene013817:intron 35.0%
ACATTTGAATCCACAACAGT+TGG + chr3.1:71186279-71186298 None:intergenic 35.0%
ACGGAGTCCATTTAGTAAAA+AGG + chr3.1:71184855-71184874 None:intergenic 35.0%
AGGATGCTTCTTAAAAGACA+GGG - chr3.1:71184312-71184331 MS.gene013817:CDS 35.0%
ATAATGAGTGAGGAGATCTT+TGG - chr3.1:71187097-71187116 MS.gene013817:intron 35.0%
ATGGAGGAATAAAACTTCCT+AGG - chr3.1:71184358-71184377 MS.gene013817:intron 35.0%
CAACCAAAGTTATGGCTATT+AGG + chr3.1:71184676-71184695 None:intergenic 35.0%
CAATGCAGTAGTTTCATCAA+CGG + chr3.1:71185957-71185976 None:intergenic 35.0%
CATTGAGTGAAATGAAACCA+AGG + chr3.1:71184962-71184981 None:intergenic 35.0%
CTAAACAGTCTCAAGAATGT+TGG + chr3.1:71185493-71185512 None:intergenic 35.0%
CTCATTATCAGAGAATCTTG+TGG + chr3.1:71187085-71187104 None:intergenic 35.0%
CTGAAGGTCAACTTACAAAA+TGG + chr3.1:71185432-71185451 None:intergenic 35.0%
GAAGGAATTGAAACAATGGA+TGG - chr3.1:71185193-71185212 MS.gene013817:CDS 35.0%
GCTTTCCAATTCTGTCTTTA+AGG + chr3.1:71186810-71186829 None:intergenic 35.0%
GGATATATGCATTCATGGAA+AGG + chr3.1:71187451-71187470 None:intergenic 35.0%
GTAACTTGAAAATGCTATGC+AGG + chr3.1:71184756-71184775 None:intergenic 35.0%
GTAAGACACGAAGTTATGAA+TGG - chr3.1:71183751-71183770 MS.gene013817:CDS 35.0%
GTTCTGTTCTGTTAAACAAC+TGG + chr3.1:71185690-71185709 None:intergenic 35.0%
TCAATAATGAGTTAAGGGGA+AGG + chr3.1:71186572-71186591 None:intergenic 35.0%
TCATCTATAAGAGTTGTGGA+GGG - chr3.1:71185929-71185948 MS.gene013817:intron 35.0%
TCTTGACACAAGCAAATTAC+AGG - chr3.1:71187029-71187048 MS.gene013817:intron 35.0%
TGATGCCTTAAAGACAGAAT+TGG - chr3.1:71186802-71186821 MS.gene013817:intron 35.0%
TGCAATTGGTATGCCATTAT+TGG - chr3.1:71186077-71186096 MS.gene013817:intron 35.0%
TGCATTGTTGCAACAAAAGT+GGG - chr3.1:71185970-71185989 MS.gene013817:intron 35.0%
TTAACAGAACAGAACCTTGT+TGG - chr3.1:71185695-71185714 MS.gene013817:intron 35.0%
TTTACTAGGTTACAGCTAGA+CGG - chr3.1:71186608-71186627 MS.gene013817:intron 35.0%
! AGATTCTCTGATAATGAGTG+AGG - chr3.1:71187087-71187106 MS.gene013817:intron 35.0%
! ATTGTTTTCAATGGCTATCC+AGG + chr3.1:71186377-71186396 None:intergenic 35.0%
! GGGGTAAAATAAACCTTTTC+TGG + chr3.1:71185221-71185240 None:intergenic 35.0%
! TAATTTTAAGCACGGTCAAG+AGG + chr3.1:71184811-71184830 None:intergenic 35.0%
! TGACGCTTTTACTCACAAAA+AGG - chr3.1:71187589-71187608 MS.gene013817:CDS 35.0%
! TGGTTCATACTTTGCCATTT+GGG - chr3.1:71187519-71187538 MS.gene013817:intron 35.0%
! TTGTGAAGAATGTTTCTGCT+GGG - chr3.1:71187367-71187386 MS.gene013817:intron 35.0%
! TTGTGAGAACTAAAGTGTTC+TGG - chr3.1:71184523-71184542 MS.gene013817:CDS 35.0%
! TTTGTGAAGAATGTTTCTGC+TGG - chr3.1:71187366-71187385 MS.gene013817:intron 35.0%
!! AGTTCTTTACCGTGGTTTTA+CGG - chr3.1:71187613-71187632 MS.gene013817:CDS 35.0%
!! GAAGGCGCTAATTTATTCAA+TGG - chr3.1:71184339-71184358 MS.gene013817:intron 35.0%
!! GTATTGATTAAGGCCATGTT+TGG - chr3.1:71186309-71186328 MS.gene013817:intron 35.0%
!! TATCACCAGTCTGTTTTTCT+TGG - chr3.1:71186023-71186042 MS.gene013817:CDS 35.0%
!! TTTGTGAGTAAAAGCGTCAA+AGG + chr3.1:71187588-71187607 None:intergenic 35.0%
!!! GATGCCCCATTGTTTTAAAT+TGG + chr3.1:71187218-71187237 None:intergenic 35.0%
!!! TTCTGATGGTTTTAGAACCA+CGG + chr3.1:71185852-71185871 None:intergenic 35.0%
!!! TTTTGGTTTTGTCGTGCAAT+TGG - chr3.1:71186063-71186082 MS.gene013817:intron 35.0%
AAAAAGGCAGTTCTTTACCG+TGG - chr3.1:71187605-71187624 MS.gene013817:CDS 40.0%
AAAAGACTTTGCCCCCAAAT+TGG - chr3.1:71186699-71186718 MS.gene013817:intron 40.0%
AAAAGGAAAGAGGTTGGACT+AGG + chr3.1:71184838-71184857 None:intergenic 40.0%
AAATACAAGTCACGGAAACC+AGG - chr3.1:71184292-71184311 MS.gene013817:CDS 40.0%
AACGTAATCAGGAGAAATGC+AGG + chr3.1:71186671-71186690 None:intergenic 40.0%
AAGTTGACCTTCAGCATGAT+TGG - chr3.1:71185438-71185457 MS.gene013817:CDS 40.0%
ACAGCTAGACGGATAATTTC+AGG - chr3.1:71186619-71186638 MS.gene013817:intron 40.0%
ACCATCCAAGAAAAACAGAC+TGG + chr3.1:71186031-71186050 None:intergenic 40.0%
AGGAAAATCTCCAACTGTTG+TGG - chr3.1:71186266-71186285 MS.gene013817:intron 40.0%
AGTCAAACCAATCATGCTGA+AGG + chr3.1:71185448-71185467 None:intergenic 40.0%
ATCTATAAGAGTTGTGGAGG+GGG - chr3.1:71185931-71185950 MS.gene013817:intron 40.0%
ATGACTAACACTACACCAAG+TGG + chr3.1:71185393-71185412 None:intergenic 40.0%
CACAATGCGCGATAAATCAT+TGG + chr3.1:71186858-71186877 None:intergenic 40.0%
CAGGATGCTTCTTAAAAGAC+AGG - chr3.1:71184311-71184330 MS.gene013817:CDS 40.0%
CATCTATAAGAGTTGTGGAG+GGG - chr3.1:71185930-71185949 MS.gene013817:intron 40.0%
CCTTCTCAGCTGAAGAAATT+GGG + chr3.1:71185241-71185260 None:intergenic 40.0%
CGCTGAAGGAATTGAAACAA+TGG - chr3.1:71185189-71185208 MS.gene013817:CDS 40.0%
CGTAGCAGTTGAGAAAAACT+CGG - chr3.1:71184872-71184891 MS.gene013817:intron 40.0%
CTCATCTATAAGAGTTGTGG+AGG - chr3.1:71185928-71185947 MS.gene013817:intron 40.0%
CTGCATTGTTGCAACAAAAG+TGG - chr3.1:71185969-71185988 MS.gene013817:intron 40.0%
CTTAAAAGACAGGGACAAGA+AGG - chr3.1:71184321-71184340 MS.gene013817:CDS 40.0%
CTTCTCAGCTGAAGAAATTG+GGG + chr3.1:71185240-71185259 None:intergenic 40.0%
CTTTCTTTCTTGCTTGGAAC+AGG - chr3.1:71187248-71187267 MS.gene013817:intron 40.0%
GAAATAGTACCTGAACCACT+TGG - chr3.1:71185375-71185394 MS.gene013817:intron 40.0%
GACGGATAATTTCAGGAAAG+TGG - chr3.1:71186626-71186645 MS.gene013817:intron 40.0%
GCTAAGACTTAGAACCTGAT+TGG + chr3.1:71186502-71186521 None:intergenic 40.0%
GGCGCTAATTTATTCAATGG+AGG - chr3.1:71184342-71184361 MS.gene013817:intron 40.0%
GGTACTATTTCAGCTGAAGA+AGG + chr3.1:71185366-71185385 None:intergenic 40.0%
GGTTGTTTATGGAGGTGAAA+AGG - chr3.1:71186937-71186956 MS.gene013817:intron 40.0%
GTACATCAGTGAAGAGTAGA+AGG + chr3.1:71185126-71185145 None:intergenic 40.0%
GTGGTTCATACTTTGCCATT+TGG - chr3.1:71187518-71187537 MS.gene013817:intron 40.0%
TAGTGTTAGTCATCTCTGCT+TGG - chr3.1:71185400-71185419 MS.gene013817:CDS 40.0%
TCCTTCTCAGCTGAAGAAAT+TGG + chr3.1:71185242-71185261 None:intergenic 40.0%
TCGTAGACAACAGTTTCAAG+CGG + chr3.1:71183867-71183886 None:intergenic 40.0%
TGAAAATGCTATGCAGGCAT+TGG + chr3.1:71184750-71184769 None:intergenic 40.0%
TGACACAAGCAAATTACAGG+AGG - chr3.1:71187032-71187051 MS.gene013817:intron 40.0%
! CGAGTTTTTCTCAACTGCTA+CGG + chr3.1:71184874-71184893 None:intergenic 40.0%
! GAACTTATTAGGGAGGTACA+TGG - chr3.1:71185901-71185920 MS.gene013817:intron 40.0%
! GGAGCGTCTAATACAATAGT+GGG + chr3.1:71187064-71187083 None:intergenic 40.0%
! GGTTCATACTTTGCCATTTG+GGG - chr3.1:71187520-71187539 MS.gene013817:intron 40.0%
! GTTATTTCCTTCAGTTCTCC+TGG - chr3.1:71186356-71186375 MS.gene013817:intron 40.0%
! GTTCATACTTTGCCATTTGG+GGG - chr3.1:71187521-71187540 MS.gene013817:CDS 40.0%
! TAGGCGGCTAATTTTAAGCA+CGG + chr3.1:71184819-71184838 None:intergenic 40.0%
! TGGAGCGTCTAATACAATAG+TGG + chr3.1:71187065-71187084 None:intergenic 40.0%
! TGTGAAGAATGTTTCTGCTG+GGG - chr3.1:71187368-71187387 MS.gene013817:intron 40.0%
! TTGTTCGTGCTCTTTTTGGA+TGG - chr3.1:71187720-71187739 MS.gene013817:CDS 40.0%
!! ACCAGTCTGTTTTTCTTGGA+TGG - chr3.1:71186027-71186046 MS.gene013817:CDS 40.0%
!! GAAGATGGTTGATGAACAAC+AGG - chr3.1:71183800-71183819 MS.gene013817:CDS 40.0%
!! GGTGAAAGCTCTTTTGAAGA+TGG - chr3.1:71183785-71183804 MS.gene013817:CDS 40.0%
!! GTTCTTTACCGTGGTTTTAC+GGG - chr3.1:71187614-71187633 MS.gene013817:CDS 40.0%
!! GTTTCTGGCAAGGTTGTTTA+TGG - chr3.1:71186926-71186945 MS.gene013817:intron 40.0%
!! TTATGAATGGAGAGTATCGC+AGG - chr3.1:71183764-71183783 MS.gene013817:CDS 40.0%
!!! CTGTCTTTTAAGAAGCATCC+TGG + chr3.1:71184313-71184332 None:intergenic 40.0%
AAAAGTGGGACGGATAGTGA+TGG - chr3.1:71186200-71186219 MS.gene013817:CDS 45.0%
AAAGATGTTGGACGACGAGA+AGG - chr3.1:71186904-71186923 MS.gene013817:intron 45.0%
AACAACACCAGTAACATCGC+CGG + chr3.1:71187705-71187724 None:intergenic 45.0%
AACACTACACCAAGTGGTTC+AGG + chr3.1:71185387-71185406 None:intergenic 45.0%
AGCTCCAACAACTGGATCAA+GGG + chr3.1:71185813-71185832 None:intergenic 45.0%
AGTTACTCGCGAAATTCGCA+TGG - chr3.1:71184770-71184789 MS.gene013817:CDS 45.0%
ATGCATCACCCGTAAAACCA+CGG + chr3.1:71187625-71187644 None:intergenic 45.0%
CACTGCTGGCGAACTTATTA+GGG - chr3.1:71185891-71185910 MS.gene013817:intron 45.0%
CAGAAGAAGGTGGTGTTTGA+CGG - chr3.1:71183678-71183697 MS.gene013817:CDS 45.0%
CCCAATTTCTTCAGCTGAGA+AGG - chr3.1:71185238-71185257 MS.gene013817:intron 45.0%
CGTCAAAGGAGAATTTCCCA+TGG + chr3.1:71187574-71187593 None:intergenic 45.0%
GCTTGAAACTGTTGTCTACG+AGG - chr3.1:71183866-71183885 MS.gene013817:CDS 45.0%
TAGACAACAGTTTCAAGCGG+TGG + chr3.1:71183864-71183883 None:intergenic 45.0%
TAGCTCCAACAACTGGATCA+AGG + chr3.1:71185814-71185833 None:intergenic 45.0%
TATGAACCACAAGCTGCACA+AGG + chr3.1:71187508-71187527 None:intergenic 45.0%
TCACTGCTGGCGAACTTATT+AGG - chr3.1:71185890-71185909 MS.gene013817:intron 45.0%
TCCATTGCTTCCCATCATCA+CGG - chr3.1:71187120-71187139 MS.gene013817:intron 45.0%
TCTGGCAAGGTTGTTTATGG+AGG - chr3.1:71186929-71186948 MS.gene013817:intron 45.0%
TCTTTACCAAGCGAGCAAAG+TGG + chr3.1:71186889-71186908 None:intergenic 45.0%
TGAAGAGTCACAGAAGAAGG+TGG - chr3.1:71183668-71183687 MS.gene013817:CDS 45.0%
TGCGTATTAGTGTGAGACTG+TGG - chr3.1:71184720-71184739 MS.gene013817:CDS 45.0%
TGCTCGCTTGGTAAAGATGT+TGG - chr3.1:71186892-71186911 MS.gene013817:intron 45.0%
TTCTAACCACTTTGCTCGCT+TGG - chr3.1:71186880-71186899 MS.gene013817:intron 45.0%
TTTCAAGCGGTGGTTTAGCA+AGG + chr3.1:71183854-71183873 None:intergenic 45.0%
! AGCTTCGATTTGATCAACGC+AGG - chr3.1:71187288-71187307 MS.gene013817:intron 45.0%
! CTGAGGGTGAGCTTTAATTC+TGG - chr3.1:71183729-71183748 MS.gene013817:CDS 45.0%
! GTGAAGAATGTTTCTGCTGG+GGG - chr3.1:71187369-71187388 MS.gene013817:intron 45.0%
! TTACGGGTGATGCATCGATA+AGG - chr3.1:71187630-71187649 MS.gene013817:CDS 45.0%
!! CAGGTAATGGAAAAGTGGGA+CGG - chr3.1:71186190-71186209 MS.gene013817:CDS 45.0%
!! CTGTCTTTAAGGCATCAACC+TGG + chr3.1:71186799-71186818 None:intergenic 45.0%
!! GGAAAGTGGTGCTGTAACAA+TGG - chr3.1:71186640-71186659 MS.gene013817:intron 45.0%
!!! GGTGTTGTTCGTGCTCTTTT+TGG - chr3.1:71187716-71187735 MS.gene013817:CDS 45.0%
!!! TTTTAGAACCACGGCGTTTC+CGG + chr3.1:71185843-71185862 None:intergenic 45.0%
!!! AATTATAATTCATTTTTTTT+TGG - chr3.1:71183950-71183969 MS.gene013817:intron 5.0%
ACAATGGATGGCCCCAGAAA+AGG - chr3.1:71185205-71185224 MS.gene013817:intron 50.0%
ACACCTTACACCAGTCGTTC+TGG - chr3.1:71186236-71186255 MS.gene013817:intron 50.0%
AGTGGAATGGGTGCATACCA+TGG - chr3.1:71187554-71187573 MS.gene013817:CDS 50.0%
CCACAAGCTGCACAAGGAAA+AGG + chr3.1:71187502-71187521 None:intergenic 50.0%
CTCATGTGAAGTCACGCTGA+AGG - chr3.1:71185175-71185194 MS.gene013817:CDS 50.0%
CTGTCCCTTGATCCAGTTGT+TGG - chr3.1:71185806-71185825 MS.gene013817:intron 50.0%
CTTGGAACAGGTGAACAAGC+TGG - chr3.1:71187260-71187279 MS.gene013817:intron 50.0%
GAGGCTGGAGCAATTTCTGA+TGG + chr3.1:71185866-71185885 None:intergenic 50.0%
GCTGCTATAGCTCCAACAAC+TGG + chr3.1:71185821-71185840 None:intergenic 50.0%
GGCATCAACCTGGAAATGAG+AGG + chr3.1:71186789-71186808 None:intergenic 50.0%
GGGTGAAGAGTCACAGAAGA+AGG - chr3.1:71183665-71183684 MS.gene013817:CDS 50.0%
GTGGAATGGGTGCATACCAT+GGG - chr3.1:71187555-71187574 MS.gene013817:CDS 50.0%
GTTGTTGGAGCTATAGCAGC+CGG - chr3.1:71185821-71185840 MS.gene013817:intron 50.0%
TGCTGGCGAACTTATTAGGG+AGG - chr3.1:71185894-71185913 MS.gene013817:intron 50.0%
TGGCTATCCAGGAGAACTGA+AGG + chr3.1:71186366-71186385 None:intergenic 50.0%
TTGGACGACGAGAAGGTTTC+TGG - chr3.1:71186911-71186930 MS.gene013817:intron 50.0%
! ACTTTGCCATTTGGGGGAGT+TGG - chr3.1:71187527-71187546 MS.gene013817:CDS 50.0%
! AGGAAAGAGGTTGGACTAGG+CGG + chr3.1:71184835-71184854 None:intergenic 50.0%
! CCTTTTCCTTGTGCAGCTTG+TGG - chr3.1:71187499-71187518 MS.gene013817:intron 50.0%
! TTGATGAAGGCTCTAGTCGC+CGG - chr3.1:71187683-71187702 MS.gene013817:CDS 50.0%
!! ACCGTGATGATGGGAAGCAA+TGG + chr3.1:71187124-71187143 None:intergenic 50.0%
!! GGAGTTGGTGACAGTGGAAT+GGG - chr3.1:71187542-71187561 MS.gene013817:CDS 50.0%
!! GTTTGGTGCCTCTCATTTCC+AGG - chr3.1:71186778-71186797 MS.gene013817:intron 50.0%
AGTGGGACGGATAGTGATGG+CGG - chr3.1:71186203-71186222 MS.gene013817:CDS 55.0%
CTGTCACCAACTCCCCCAAA+TGG + chr3.1:71187536-71187555 None:intergenic 55.0%
GCTCCAGAACGACTGGTGTA+AGG + chr3.1:71186242-71186261 None:intergenic 55.0%
GGTGGTGTTTGACGGAGAAG+CGG - chr3.1:71183686-71183705 MS.gene013817:CDS 55.0%
! GTCGTTGGTGAAGGAGCTGA+GGG - chr3.1:71183713-71183732 MS.gene013817:CDS 55.0%
!! ACACCAGTCGTTCTGGAGCT+TGG - chr3.1:71186243-71186262 MS.gene013817:intron 55.0%
!! CGACGAGAAGGTTTCTGGCA+AGG - chr3.1:71186916-71186935 MS.gene013817:intron 55.0%
!! GGGAGTTGGTGACAGTGGAA+TGG - chr3.1:71187541-71187560 MS.gene013817:CDS 55.0%
!! TTTGGGGGAGTTGGTGACAG+TGG - chr3.1:71187536-71187555 MS.gene013817:CDS 55.0%
CCTCCAAGCTCCAGAACGAC+TGG + chr3.1:71186249-71186268 None:intergenic 60.0%
CTAGTCGCCGGCGATGTTAC+TGG - chr3.1:71187695-71187714 MS.gene013817:CDS 60.0%
GTTCGCCAGCAGTGAAGACG+AGG + chr3.1:71185885-71185904 None:intergenic 60.0%
TATAGCAGCCGGAAACGCCG+TGG - chr3.1:71185832-71185851 MS.gene013817:intron 60.0%
TCCAGCCTCGTCTTCACTGC+TGG - chr3.1:71185877-71185896 MS.gene013817:intron 60.0%
! CGTCGTTGGTGAAGGAGCTG+AGG - chr3.1:71183712-71183731 MS.gene013817:CDS 60.0%
!! CCAGTCGTTCTGGAGCTTGG+AGG - chr3.1:71186246-71186265 MS.gene013817:intron 60.0%
GCCAGCAGTGAAGACGAGGC+TGG + chr3.1:71185881-71185900 None:intergenic 65.0%
! AGCGGCGTCGTCGTTGGTGA+AGG - chr3.1:71183704-71183723 MS.gene013817:CDS 65.0%
CGGAGAAGCGGCGTCGTCGT+TGG - chr3.1:71183698-71183717 MS.gene013817:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 71183660 71187748 71183660 ID=MS.gene013817
chr3.1 mRNA 71183660 71187748 71183660 ID=MS.gene013817.t1;Parent=MS.gene013817
chr3.1 exon 71187521 71187748 71187521 ID=MS.gene013817.t1.exon1;Parent=MS.gene013817.t1
chr3.1 CDS 71187521 71187748 71187521 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71186182 71186250 71186182 ID=MS.gene013817.t1.exon2;Parent=MS.gene013817.t1
chr3.1 CDS 71186182 71186250 71186182 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71185973 71186069 71185973 ID=MS.gene013817.t1.exon3;Parent=MS.gene013817.t1
chr3.1 CDS 71185973 71186069 71185973 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71185398 71185604 71185398 ID=MS.gene013817.t1.exon4;Parent=MS.gene013817.t1
chr3.1 CDS 71185398 71185604 71185398 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71185100 71185215 71185100 ID=MS.gene013817.t1.exon5;Parent=MS.gene013817.t1
chr3.1 CDS 71185100 71185215 71185100 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71184688 71184792 71184688 ID=MS.gene013817.t1.exon6;Parent=MS.gene013817.t1
chr3.1 CDS 71184688 71184792 71184688 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71184436 71184608 71184436 ID=MS.gene013817.t1.exon7;Parent=MS.gene013817.t1
chr3.1 CDS 71184436 71184608 71184436 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71184267 71184357 71184267 ID=MS.gene013817.t1.exon8;Parent=MS.gene013817.t1
chr3.1 CDS 71184267 71184357 71184267 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71183989 71184138 71183989 ID=MS.gene013817.t1.exon9;Parent=MS.gene013817.t1
chr3.1 CDS 71183989 71184138 71183989 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
chr3.1 exon 71183660 71183893 71183660 ID=MS.gene013817.t1.exon10;Parent=MS.gene013817.t1
chr3.1 CDS 71183660 71183893 71183660 ID=cds.MS.gene013817.t1;Parent=MS.gene013817.t1
Gene Sequence

>MS.gene013817

ATGTCGGGTGAAGAGTCACAGAAGAAGGTGGTGTTTGACGGAGAAGCGGCGTCGTCGTTGGTGAAGGAGCTGAGGGTGAGCTTTAATTCTGGTAAGACACGAAGTTATGAATGGAGAGTATCGCAGGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTCTTCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGGTACCTAATTTCATGTTTAAGTTGCTTTCATATATATATGATTTTTATGGTCTCTCTTTTTAAATTATAATTCATTTTTTTTTGGTACGTGCAATTGAAATCGATAGAAGAGCTAGAGAATCAAGTTTTTTGTTATAACATAAACATCATAAGTTTTCAAGGCTGAGATATTCTTGAGATTTTTCATTTGGAGTCACTATTATGATGGCAACCGTTCCGACGATACAATTACTTTGATTTTTTTTCCTTGTATGACGTCAATATTTTATGTTTTCTTTAATAAAGGAGGAAACATGCTTTTCACTTTTTCCCTTCAAAAAGAAAAATGCTTTTCACCTTCTTTTTTTTTTACGGAACATGCTTTTCACTTGAACGATCACATTAAAGTTACTTCACAATCACGTAAATACAAGTCACGGAAACCAGGATGCTTCTTAAAAGACAGGGACAAGAAGGCGCTAATTTATTCAATGGAGGAATAAAACTTCCTAGGCATAATAAATTGGTTTGGTTTGGTTTTTATGAGAAAATATATCTAAATCAATTTGTTAGGAAATTTGAAAGTTAGTAGATAATTTGACCAATAGTTTTCGATATATAGTGATACTCTTTCTTTCAAATGATCGATCAAAGAATTGTGAGAACTAAAGTGTTCTGGAAAATATAAGTAAAAGGTGTATGTAAAATAAGGGTAAATTACAAGAAAAATAAACTTTGATTGACTGGTGTGTATGTAAAATGTTTTTTACAATGAGTAGTTGGAGATAAAAATGTTAAAGCTAAATCCTAATAGCCATAACTTTGGTTGACACAATATGCGCTCAGCTCAACTTGCGTATTAGTGTGAGACTGTGGCATGCCAATGCCTGCATAGCATTTTCAAGTTACTCGCGAAATTCGCATGGTCATGTGTGAGTGTGCCTCTTGACCGTGCTTAAAATTAGCCGCCTAGTCCAACCTCTTTCCTTTTTACTAAATGGACTCCGTAGCAGTTGAGAAAAACTCGGTTATACTATTCTCAACTACATTGGATTCAACTTAAAATATTTTTGGGTTTAAAAATTTAGTATCCCTTGGTTTCATTTCACTCAATGACACCGCTTTCCATAAATTCAAAATAGAGTAACCGAACATTTTGTAACATTTGTAACTAAACAAACATATTTTGGATGAATACAACTAAGCAATTGACAGGTCAATGTTGCAATCAATACAACTATAATAAAGATAATTTTCCTTCTACTCTTCACTGATGTACTTTGTTTTGCAGATTGGTATGTTTAAAAACTCATGTGAAGTCACGCTGAAGGAATTGAAACAATGGATGGCCCCAGAAAAGGTTTATTTTACCCCAATTTCTTCAGCTGAGAAGGACATTTTTCATTTATATTTCTTATATATAGTTTATTTGAATATTTTTATAACAAAAAGTTCCTTTAATAATATTTCAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTAGTGTTAGTCATCTCTGCTTGGAACTATCCATTTTGTAAGTTGACCTTCAGCATGATTGGTTTGACTTATTTGAGTTTATTTACTTACACCAACATTCTTGAGACTGTTTAGTAGAACTTATATTGAAACAACTTATATGCAAGTCTACAAGCTGTTTTTGACTTATTTCCATAAATTTTTCACGATATCTTATAAAAACAGTTTGACTTTATTTTACCTTTTGTTATACAAATGGCTTATACATAGACACTTATATGATAAATGTGTATGCTATAAACACTTCATCCAGTTGTTTAACAGAACAGAACCTTGTTGGTTGTATTTGAGTTAATATTTTGAGCCTTTAGTTTCTTTAATAATCTATGAAGACTATAATATCACTCTCTCTGTCTGTCTTTTCAGTGCTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCCGGAAACGCCGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCGAACTTATTAGGGAGGTACATGGATAACTCATCTATAAGAGTTGTGGAGGGGGCCGTTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTGTATACAGGTTGGTCTTGTTTATCACCAGTCTGTTTTTCTTGGATGGTTATGAATTGTTATTTTGGTTTTGTCGTGCAATTGGTATGCCATTATTGGTATTGTGAATTTTGAAATCTCATCTCAGATAATCAAATAAATACATCATTTGAACAAAAGATTTCATAGCATAAGTAATTACTTGATTTTCAGGTAATGGAAAAGTGGGACGGATAGTGATGGCGGCTGCTGCAAAACACCTTACACCAGTCGTTCTGGAGCTTGGAGGAAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTATTGATTAAGGCCATGTTTGGATTGACTTATTAAGTTGTTATCAAGTTATTTCCTTCAGTTCTCCTGGATAGCCATTGAAAACAATTTAACTTTATTTTATCTTTTATTATAAAAAAACCTTACACATGAAAGCAATATGACAAATCGACAAGTGTTTATGTTATAAGCGTTTAATTAAATTTTTCATCCAATCAGGTTCTAAGTCTTAGCCTTCTTTTTTATTTTCCAGTCAGTAACTAGTTATATCACTTTGATCTCCTTCCCCTTAACTCATTATTGACTTAAATTAATTTGTGTTTACTAGGTTACAGCTAGACGGATAATTTCAGGAAAGTGGTGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTATGAAATTTTCCCTCGTTGTTAAGAGTTCTAAATATCTGTCTTTGTGTATCTAATGTTTGGTGCCTCTCATTTCCAGGTTGATGCCTTAAAGACAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTATCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGGTAAAGATGTTGGACGACGAGAAGGTTTCTGGCAAGGTTGTTTATGGAGGTGAAAAGGATGAAAACAAACTGTAAGCTCTCCTCTTAATTCAAGTTTAGTAGGTTTTATATACTGCAATGCAATGGATCTTGACACAAGCAAATTACAGGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTAAGAATAAAAGACACAAAGAACTCTTTGAAAAGTACTCAAATATTCATCGATAAGCTTCATTAGCTTGTATCCAATTTAAAACAATGGGGCATCAATTATAATACTTTCTTTCTTGCTTGGAACAGGTGAACAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATGTAATAGTTTGTTTTTTATTTTCTAAAACCTTTCCATGAATGCATATATCCTTATCATGCAATGTTACTTATATCTTTTCCTTTTCCTTGTGCAGCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGACGCTTTTACTCACAAAAAGGCAGTTCTTTACCGTGGTTTTACGGGTGATGCATCGATAAGGTACCCGCCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGCGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA
Protein sequence

>MS.gene013817.t1

MSGEESQKKVVFDGEAASSLVKELRVSFNSGKTRSYEWRVSQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSIRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKTELESFFGKNPIESNDLSRIVSSNHFARLVKMLDDEKVSGKVVYGGEKDENKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDLINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS