Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70176.t1 | XP_003630349.2 | 97.4 | 495 | 13 | 0 | 319 | 813 | 48 | 542 | 7.20E-271 | 943.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70176.t1 | Q8W033 | 63.8 | 516 | 181 | 2 | 298 | 813 | 39 | 548 | 1.4e-190 | 667.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70176.t1 | G7LF15 | 97.4 | 495 | 13 | 0 | 319 | 813 | 48 | 542 | 5.2e-271 | 943.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049265 | MS.gene70176 | -0.805779 | 1.13E-49 | -1.69E-46 |
MS.gene05081 | MS.gene70176 | 0.831418 | 1.69E-55 | -1.69E-46 |
MS.gene051171 | MS.gene70176 | 0.804109 | 2.53E-49 | -1.69E-46 |
MS.gene051244 | MS.gene70176 | 0.815213 | 1.04E-51 | -1.69E-46 |
MS.gene051838 | MS.gene70176 | 0.818579 | 1.82E-52 | -1.69E-46 |
MS.gene051858 | MS.gene70176 | 0.807556 | 4.77E-50 | -1.69E-46 |
MS.gene052134 | MS.gene70176 | 0.835638 | 1.49E-56 | -1.69E-46 |
MS.gene052135 | MS.gene70176 | 0.817562 | 3.09E-52 | -1.69E-46 |
MS.gene052136 | MS.gene70176 | 0.804642 | 1.96E-49 | -1.69E-46 |
MS.gene052481 | MS.gene70176 | 0.823147 | 1.62E-53 | -1.69E-46 |
MS.gene053330 | MS.gene70176 | 0.808249 | 3.40E-50 | -1.69E-46 |
MS.gene055206 | MS.gene70176 | 0.829674 | 4.51E-55 | -1.69E-46 |
MS.gene055370 | MS.gene70176 | 0.830602 | 2.68E-55 | -1.69E-46 |
MS.gene056351 | MS.gene70176 | 0.815453 | 9.17E-52 | -1.69E-46 |
MS.gene056633 | MS.gene70176 | 0.803379 | 3.59E-49 | -1.69E-46 |
MS.gene057048 | MS.gene70176 | 0.809011 | 2.34E-50 | -1.69E-46 |
MS.gene057196 | MS.gene70176 | 0.845757 | 3.33E-59 | -1.69E-46 |
MS.gene057332 | MS.gene70176 | 0.823975 | 1.04E-53 | -1.69E-46 |
MS.gene058746 | MS.gene70176 | 0.841617 | 4.26E-58 | -1.69E-46 |
MS.gene059512 | MS.gene70176 | 0.846354 | 2.29E-59 | -1.69E-46 |
MS.gene059902 | MS.gene70176 | 0.811972 | 5.36E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene70176 | MS.gene89630 | PPI |
MS.gene63030 | MS.gene70176 | PPI |
MS.gene013819 | MS.gene70176 | PPI |
MS.gene026652 | MS.gene70176 | PPI |
MS.gene047892 | MS.gene70176 | PPI |
MS.gene70176 | MS.gene013817 | PPI |
MS.gene75424 | MS.gene70176 | PPI |
MS.gene045063 | MS.gene70176 | PPI |
MS.gene70176 | MS.gene047890 | PPI |
MS.gene33615 | MS.gene70176 | PPI |
MS.gene012075 | MS.gene70176 | PPI |
MS.gene70176 | MS.gene93177 | PPI |
MS.gene70176 | MS.gene76463 | PPI |
MS.gene047888 | MS.gene70176 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70176.t1 | MTR_8g094600 | 96.032 | 504 | 20 | 0 | 310 | 813 | 39 | 542 | 0.0 | 986 |
MS.gene70176.t1 | MTR_1g029840 | 67.012 | 482 | 159 | 0 | 331 | 812 | 7 | 488 | 0.0 | 701 |
MS.gene70176.t1 | MTR_3g088150 | 65.918 | 490 | 167 | 0 | 323 | 812 | 1 | 490 | 0.0 | 700 |
MS.gene70176.t1 | MTR_1g029840 | 66.049 | 486 | 165 | 0 | 327 | 812 | 3 | 488 | 0.0 | 694 |
MS.gene70176.t1 | MTR_8g094610 | 95.719 | 327 | 5 | 1 | 1 | 318 | 1 | 327 | 0.0 | 646 |
MS.gene70176.t1 | MTR_8g076480 | 48.069 | 466 | 242 | 0 | 344 | 809 | 13 | 478 | 1.83e-156 | 465 |
MS.gene70176.t1 | MTR_2g097950 | 47.182 | 479 | 250 | 1 | 335 | 810 | 15 | 493 | 8.89e-154 | 459 |
MS.gene70176.t1 | MTR_4g065040 | 50.873 | 458 | 222 | 1 | 344 | 798 | 9 | 466 | 9.95e-141 | 425 |
MS.gene70176.t1 | MTR_2g097950 | 44.958 | 476 | 230 | 2 | 335 | 810 | 15 | 458 | 1.35e-136 | 414 |
MS.gene70176.t1 | MTR_1222s0010 | 38.420 | 367 | 218 | 4 | 348 | 712 | 13 | 373 | 1.03e-75 | 261 |
MS.gene70176.t1 | MTR_1314s0010 | 34.615 | 338 | 211 | 4 | 440 | 769 | 1 | 336 | 1.15e-67 | 228 |
MS.gene70176.t1 | MTR_2g034160 | 25.767 | 489 | 336 | 10 | 344 | 809 | 92 | 576 | 3.07e-39 | 154 |
MS.gene70176.t1 | MTR_2g067660 | 29.310 | 348 | 237 | 7 | 436 | 777 | 178 | 522 | 4.58e-38 | 150 |
MS.gene70176.t1 | MTR_4g106510 | 29.167 | 432 | 292 | 10 | 362 | 784 | 74 | 500 | 3.63e-35 | 140 |
MS.gene70176.t1 | MTR_3g078550 | 29.274 | 427 | 280 | 10 | 356 | 769 | 38 | 455 | 6.13e-35 | 139 |
MS.gene70176.t1 | MTR_3g078550 | 29.274 | 427 | 280 | 10 | 356 | 769 | 68 | 485 | 1.01e-34 | 139 |
MS.gene70176.t1 | MTR_3g078490 | 28.471 | 425 | 286 | 9 | 356 | 769 | 98 | 515 | 3.91e-32 | 132 |
MS.gene70176.t1 | MTR_4g107040 | 28.280 | 343 | 236 | 7 | 435 | 770 | 196 | 535 | 5.75e-31 | 129 |
MS.gene70176.t1 | MTR_3g078170 | 29.598 | 348 | 225 | 8 | 435 | 770 | 194 | 533 | 1.00e-29 | 125 |
MS.gene70176.t1 | MTR_8g064170 | 26.484 | 438 | 302 | 12 | 344 | 770 | 104 | 532 | 7.07e-29 | 122 |
MS.gene70176.t1 | MTR_8g083530 | 25.277 | 451 | 315 | 13 | 338 | 776 | 60 | 500 | 8.80e-29 | 121 |
MS.gene70176.t1 | MTR_6g086300 | 28.000 | 350 | 242 | 7 | 434 | 776 | 153 | 499 | 2.26e-27 | 117 |
MS.gene70176.t1 | MTR_6g086300 | 28.000 | 350 | 242 | 7 | 434 | 776 | 153 | 499 | 2.26e-27 | 117 |
MS.gene70176.t1 | MTR_6g086340 | 27.246 | 345 | 241 | 7 | 439 | 776 | 156 | 497 | 7.74e-26 | 112 |
MS.gene70176.t1 | MTR_4g131180 | 26.107 | 429 | 282 | 13 | 345 | 752 | 53 | 467 | 9.13e-25 | 109 |
MS.gene70176.t1 | MTR_2g009750 | 26.952 | 397 | 266 | 12 | 406 | 789 | 122 | 507 | 2.49e-23 | 105 |
MS.gene70176.t1 | MTR_2g009750 | 26.952 | 397 | 266 | 12 | 406 | 789 | 123 | 508 | 2.67e-23 | 105 |
MS.gene70176.t1 | MTR_2g009750 | 26.884 | 398 | 266 | 12 | 406 | 789 | 123 | 509 | 3.34e-23 | 104 |
MS.gene70176.t1 | MTR_1g014320 | 25.467 | 428 | 284 | 13 | 346 | 752 | 54 | 467 | 1.46e-22 | 102 |
MS.gene70176.t1 | MTR_4g131180 | 25.679 | 405 | 273 | 11 | 346 | 732 | 54 | 448 | 2.41e-22 | 101 |
MS.gene70176.t1 | MTR_3g078170 | 30.224 | 268 | 169 | 7 | 435 | 690 | 194 | 455 | 6.13e-22 | 100 |
MS.gene70176.t1 | MTR_4g093170 | 27.762 | 353 | 237 | 9 | 437 | 776 | 174 | 521 | 1.01e-21 | 100 |
MS.gene70176.t1 | MTR_8g064170 | 24.256 | 437 | 281 | 13 | 344 | 770 | 104 | 500 | 2.21e-19 | 92.8 |
MS.gene70176.t1 | MTR_4g020720 | 44.660 | 103 | 49 | 3 | 512 | 608 | 121 | 221 | 7.43e-19 | 87.8 |
MS.gene70176.t1 | MTR_1399s0020 | 24.484 | 339 | 207 | 7 | 437 | 773 | 50 | 341 | 8.08e-18 | 86.3 |
MS.gene70176.t1 | MTR_3g078170 | 30.864 | 243 | 150 | 7 | 435 | 665 | 194 | 430 | 2.28e-17 | 85.9 |
MS.gene70176.t1 | MTR_3g078170 | 30.864 | 243 | 150 | 7 | 435 | 665 | 194 | 430 | 2.69e-17 | 85.9 |
MS.gene70176.t1 | MTR_3g078490 | 29.861 | 288 | 190 | 7 | 356 | 636 | 68 | 350 | 8.73e-17 | 83.6 |
MS.gene70176.t1 | MTR_8g083530 | 28.235 | 255 | 166 | 10 | 338 | 583 | 60 | 306 | 6.87e-15 | 77.8 |
MS.gene70176.t1 | MTR_2g042330 | 21.930 | 342 | 255 | 7 | 437 | 768 | 152 | 491 | 6.77e-14 | 75.5 |
MS.gene70176.t1 | MTR_4g020710 | 50.000 | 66 | 33 | 0 | 627 | 692 | 18 | 83 | 3.98e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70176.t1 | AT4G34240 | 64.147 | 516 | 179 | 3 | 298 | 813 | 39 | 548 | 0.0 | 682 |
MS.gene70176.t1 | AT4G34240 | 64.147 | 516 | 179 | 3 | 298 | 813 | 24 | 533 | 0.0 | 681 |
MS.gene70176.t1 | AT1G44170 | 61.795 | 479 | 183 | 0 | 332 | 810 | 4 | 482 | 0.0 | 642 |
MS.gene70176.t1 | AT1G44170 | 61.795 | 479 | 183 | 0 | 332 | 810 | 4 | 482 | 0.0 | 642 |
MS.gene70176.t1 | AT1G44170 | 64.865 | 407 | 143 | 0 | 404 | 810 | 13 | 419 | 0.0 | 579 |
MS.gene70176.t1 | AT4G34240 | 67.822 | 404 | 130 | 0 | 410 | 813 | 3 | 406 | 0.0 | 578 |
MS.gene70176.t1 | AT4G34240 | 64.804 | 358 | 120 | 3 | 298 | 655 | 39 | 390 | 7.46e-154 | 455 |
MS.gene70176.t1 | AT4G36250 | 47.146 | 473 | 247 | 1 | 344 | 813 | 12 | 484 | 2.76e-153 | 457 |
MS.gene70176.t1 | AT5G08750 | 59.459 | 333 | 118 | 7 | 1 | 318 | 1 | 331 | 1.75e-119 | 365 |
MS.gene70176.t1 | AT5G08750 | 59.459 | 333 | 118 | 7 | 1 | 318 | 1 | 331 | 1.75e-119 | 365 |
MS.gene70176.t1 | AT5G08750 | 59.459 | 333 | 118 | 7 | 1 | 318 | 1 | 331 | 1.75e-119 | 365 |
MS.gene70176.t1 | AT5G08750 | 59.459 | 333 | 118 | 7 | 1 | 318 | 1 | 331 | 1.75e-119 | 365 |
MS.gene70176.t1 | AT5G08750 | 59.459 | 333 | 118 | 7 | 1 | 318 | 1 | 331 | 1.75e-119 | 365 |
MS.gene70176.t1 | AT5G08750 | 59.459 | 333 | 118 | 7 | 1 | 318 | 1 | 331 | 1.75e-119 | 365 |
MS.gene70176.t1 | AT5G08750 | 58.859 | 333 | 120 | 7 | 1 | 318 | 8 | 338 | 4.61e-118 | 362 |
MS.gene70176.t1 | AT5G08750 | 58.859 | 333 | 120 | 7 | 1 | 318 | 8 | 338 | 4.61e-118 | 362 |
MS.gene70176.t1 | AT5G08750 | 58.859 | 333 | 120 | 7 | 1 | 318 | 8 | 338 | 4.61e-118 | 362 |
MS.gene70176.t1 | AT5G08750 | 58.859 | 333 | 120 | 7 | 1 | 318 | 8 | 338 | 4.61e-118 | 362 |
MS.gene70176.t1 | AT5G63780 | 53.254 | 338 | 135 | 6 | 1 | 318 | 1 | 335 | 1.69e-107 | 334 |
MS.gene70176.t1 | AT5G63780 | 53.254 | 338 | 135 | 6 | 1 | 318 | 1 | 335 | 1.69e-107 | 334 |
MS.gene70176.t1 | AT3G66658 | 27.273 | 484 | 327 | 9 | 348 | 809 | 96 | 576 | 1.87e-42 | 164 |
MS.gene70176.t1 | AT3G66658 | 27.563 | 439 | 304 | 6 | 348 | 774 | 96 | 532 | 3.18e-42 | 162 |
MS.gene70176.t1 | AT1G79440 | 31.965 | 341 | 221 | 8 | 436 | 769 | 184 | 520 | 1.09e-39 | 154 |
MS.gene70176.t1 | AT1G74920 | 29.577 | 426 | 281 | 12 | 362 | 775 | 69 | 487 | 9.73e-38 | 148 |
MS.gene70176.t1 | AT1G74920 | 29.577 | 426 | 281 | 12 | 362 | 775 | 74 | 492 | 1.41e-37 | 148 |
MS.gene70176.t1 | AT3G48170 | 27.115 | 461 | 317 | 11 | 338 | 784 | 45 | 500 | 6.31e-33 | 134 |
MS.gene70176.t1 | AT1G23800 | 26.846 | 447 | 305 | 12 | 336 | 770 | 89 | 525 | 5.17e-31 | 129 |
MS.gene70176.t1 | AT3G48000 | 25.393 | 445 | 314 | 10 | 336 | 770 | 93 | 529 | 5.12e-29 | 122 |
MS.gene70176.t1 | AT3G24503 | 26.686 | 341 | 240 | 7 | 437 | 770 | 155 | 492 | 4.50e-26 | 113 |
MS.gene70176.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 344 | 752 | 98 | 507 | 5.79e-21 | 98.2 |
MS.gene70176.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 344 | 752 | 58 | 467 | 7.91e-21 | 97.4 |
MS.gene70176.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 344 | 752 | 58 | 467 | 7.91e-21 | 97.4 |
MS.gene70176.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 344 | 752 | 58 | 467 | 9.04e-21 | 97.1 |
MS.gene70176.t1 | AT2G14170 | 27.174 | 368 | 248 | 11 | 437 | 790 | 137 | 498 | 1.37e-18 | 90.5 |
MS.gene70176.t1 | AT2G14170 | 27.371 | 369 | 246 | 12 | 437 | 790 | 246 | 607 | 2.63e-18 | 90.1 |
MS.gene70176.t1 | AT1G54100 | 23.894 | 339 | 246 | 9 | 440 | 768 | 154 | 490 | 1.59e-17 | 87.0 |
MS.gene70176.t1 | AT1G54100 | 23.894 | 339 | 246 | 9 | 440 | 768 | 154 | 490 | 1.59e-17 | 87.0 |
MS.gene70176.t1 | AT1G23800 | 30.385 | 260 | 163 | 7 | 336 | 582 | 89 | 343 | 2.74e-17 | 85.5 |
MS.gene70176.t1 | AT2G14170 | 27.451 | 306 | 205 | 9 | 437 | 730 | 246 | 546 | 2.46e-16 | 83.6 |
MS.gene70176.t1 | AT2G37950 | 47.945 | 73 | 34 | 2 | 117 | 187 | 99 | 169 | 3.18e-11 | 63.9 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCCTTTGCTTTCTATAAC+TGG | 0.121129 | 4.1:-7891792 | None:intergenic |
TACACAGATAGCAGCTTTAA+AGG | 0.191916 | 4.1:+7899731 | MS.gene70176:intron |
GTTATGCAAGAGGAGATATT+TGG | 0.197595 | 4.1:+7900045 | MS.gene70176:CDS |
GATTGCTCCAACTATCTTAT+TGG | 0.199481 | 4.1:+7900002 | MS.gene70176:CDS |
TCCAGGAGTGCAGTTGTTTC+AGG | 0.225324 | 4.1:-7898806 | None:intergenic |
ACAGTAATAATTGGCAAAAT+TGG | 0.249721 | 4.1:-7900069 | None:intergenic |
TCAGGATCCACACCAGTATT+TGG | 0.251627 | 4.1:-7892164 | None:intergenic |
GCAACTCGTGGTTTGCCTTT+TGG | 0.265536 | 4.1:+7900901 | MS.gene70176:CDS |
TATATAAAACTGATTTCTTA+TGG | 0.269097 | 4.1:-7900984 | None:intergenic |
ATCTCAATCACCACTTAGTT+TGG | 0.275560 | 4.1:+7891677 | MS.gene70176:CDS |
TGTTTAGGTGTAGTGTCTTT+TGG | 0.285842 | 4.1:-7891840 | None:intergenic |
AGCAGCTTTAAAGGAAGAAT+TGG | 0.292732 | 4.1:+7899740 | MS.gene70176:CDS |
CGGGTATTCTGTACGGGTTC+AGG | 0.298579 | 4.1:-7892335 | None:intergenic |
ATGGTACTCACAGTAATAAT+TGG | 0.320472 | 4.1:-7900078 | None:intergenic |
CCCCTTTGCTTTCTATAACT+GGG | 0.341150 | 4.1:-7891791 | None:intergenic |
CACTGCGTTGCCCGCGGAAA+TGG | 0.344228 | 4.1:-7898678 | None:intergenic |
CAGATAATTCTTGCTTTGCT+TGG | 0.345687 | 4.1:+7901099 | MS.gene70176:CDS |
ACACCTAAACAAAACTTTGT+AGG | 0.351614 | 4.1:+7891852 | MS.gene70176:CDS |
GAAAATAAACAAGTATTTGA+TGG | 0.363766 | 4.1:+7897437 | MS.gene70176:CDS |
TCCTGAAACAACTGCACTCC+TGG | 0.366164 | 4.1:+7898805 | MS.gene70176:CDS |
AGTTTGTGCTTACAAGAATC+AGG | 0.368371 | 4.1:+7894855 | MS.gene70176:intron |
AAAGTATCTTATCCCACTTC+TGG | 0.373046 | 4.1:-7898829 | None:intergenic |
ATTCTACAGCCCACTTAGTT+CGG | 0.381510 | 4.1:-7892355 | None:intergenic |
TAATTCTTGCTTTGCTTGGA+TGG | 0.383020 | 4.1:+7901103 | MS.gene70176:CDS |
CCCTTTGCTTTCTATAACTG+GGG | 0.385809 | 4.1:-7891790 | None:intergenic |
TGTATATGGAGGGTACCTTA+TGG | 0.386947 | 4.1:-7901028 | None:intergenic |
GTTATATATGCTTCTAGTCT+AGG | 0.388649 | 4.1:-7897620 | None:intergenic |
CGAATGGCGGATTTCCCAAT+TGG | 0.395995 | 4.1:+7897526 | MS.gene70176:CDS |
AAGCAAAGGGGAAGTAAAGT+TGG | 0.398001 | 4.1:+7891803 | MS.gene70176:CDS |
TGTAAGAATGATTTGGAGAT+TGG | 0.399574 | 4.1:+7891897 | MS.gene70176:CDS |
TCTTCACTATGGCCTCCAAT+TGG | 0.399929 | 4.1:-7897541 | None:intergenic |
AGAACTGTCAATGGAGATCT+AGG | 0.405662 | 4.1:+7892125 | MS.gene70176:CDS |
GCAAGCAGGGATGATGTTGC+AGG | 0.410513 | 4.1:-7898725 | None:intergenic |
TATGTGGACAAGATATCTTC+TGG | 0.414474 | 4.1:+7900275 | MS.gene70176:CDS |
GGTTAAGTGAAATTGCACTA+TGG | 0.421292 | 4.1:+7892213 | MS.gene70176:CDS |
GCGGAAATGGCTCCAATGAC+TGG | 0.421715 | 4.1:-7898665 | None:intergenic |
TTATCATTGGATCCAGTCAT+TGG | 0.424102 | 4.1:+7898653 | MS.gene70176:CDS |
AGATATGCAGCCAAAGGCTT+TGG | 0.424118 | 4.1:-7900221 | None:intergenic |
GGAGGATAATAGCTGGCAAA+TGG | 0.425073 | 4.1:+7899568 | MS.gene70176:CDS |
CCTACCTGCAGTGTTATCAT+TGG | 0.425905 | 4.1:+7898640 | MS.gene70176:intron |
CGGATAGCAGCCACAGCATC+AGG | 0.426975 | 4.1:-7892182 | None:intergenic |
AAAACTTTGTAGGACCTAAC+GGG | 0.434603 | 4.1:+7891862 | MS.gene70176:CDS |
AAAATCAAGGCCAAAGCCTT+TGG | 0.435468 | 4.1:+7900211 | MS.gene70176:CDS |
CTCTTCTAACATCTTCACTA+TGG | 0.435644 | 4.1:-7897552 | None:intergenic |
GCTGACTTCAACAAGGTTGT+TGG | 0.442238 | 4.1:+7892071 | MS.gene70176:CDS |
ACAGGGATCTTGCTTGCTAC+AGG | 0.442337 | 4.1:+7892380 | MS.gene70176:CDS |
GTAAGTTCTTCTTTCTTCAC+AGG | 0.445074 | 4.1:-7891615 | None:intergenic |
GGCAAATGGGCATGCAATAG+TGG | 0.448828 | 4.1:+7899582 | MS.gene70176:CDS |
GCACAAGATCATCCAAATAC+TGG | 0.450008 | 4.1:+7892152 | MS.gene70176:CDS |
TTCTACAGCCCACTTAGTTC+GGG | 0.450919 | 4.1:-7892354 | None:intergenic |
TTAAAGTTATTGCTATTATG+AGG | 0.451574 | 4.1:-7892242 | None:intergenic |
TTTGGAGAGGGAGATGGGCT+TGG | 0.454391 | 4.1:+7891695 | MS.gene70176:CDS |
TTGGTTTGTCTCATGAAGAT+AGG | 0.454593 | 4.1:+7891916 | MS.gene70176:CDS |
CTTAGTTCGGGTATTCTGTA+CGG | 0.454973 | 4.1:-7892342 | None:intergenic |
TTATGCAAGAGGAGATATTT+GGG | 0.457790 | 4.1:+7900046 | MS.gene70176:CDS |
TAGAGTAGGTCGCATTGTTA+TGG | 0.459468 | 4.1:+7899362 | MS.gene70176:CDS |
CTTAGTTTGGAGAGGGAGAT+GGG | 0.461446 | 4.1:+7891690 | MS.gene70176:CDS |
GAAACTCTTGAATGAGGATA+AGG | 0.463840 | 4.1:+7899842 | MS.gene70176:CDS |
ACTCCAGTGATTCTTGAGCT+TGG | 0.463911 | 4.1:+7899405 | MS.gene70176:CDS |
GACACAATCTCTGCTGATGA+TGG | 0.464544 | 4.1:-7898258 | None:intergenic |
CTTCTAGTCTAGGTTTAGAA+AGG | 0.464549 | 4.1:-7897610 | None:intergenic |
AAAGAAGAACTTACTGATGA+TGG | 0.464855 | 4.1:+7891624 | MS.gene70176:CDS |
TTTCTAGCAAATTTGCAAGC+AGG | 0.466192 | 4.1:-7898739 | None:intergenic |
CCCCAGTTATAGAAAGCAAA+GGG | 0.466488 | 4.1:+7891790 | MS.gene70176:CDS |
CTTCACTATGGCCTCCAATT+GGG | 0.466557 | 4.1:-7897540 | None:intergenic |
CTTTGCTTGTTAGAGAGCTC+AGG | 0.469563 | 4.1:+7897471 | MS.gene70176:CDS |
GTCATTGGAGCCATTTCCGC+GGG | 0.470626 | 4.1:+7898668 | MS.gene70176:CDS |
TTTGGAGGAGTTGGAGAAAG+TGG | 0.471512 | 4.1:+7900919 | MS.gene70176:CDS |
ATCTCTCATCTCAACATTCG+AGG | 0.471849 | 4.1:-7891649 | None:intergenic |
TTCTAGCAAATTTGCAAGCA+GGG | 0.472320 | 4.1:-7898738 | None:intergenic |
TTTCACTTAACCGTTGCCTT+CGG | 0.479049 | 4.1:-7892202 | None:intergenic |
ACATTTGAATCAACAACAGC+TGG | 0.482725 | 4.1:-7899438 | None:intergenic |
GTCTAGAAAACTGCAGGAAG+TGG | 0.485684 | 4.1:+7894425 | MS.gene70176:intron |
TTTCACAAATTGTAGATCCA+TGG | 0.486651 | 4.1:-7892016 | None:intergenic |
TGCTTACCATCACCCTTGCA+TGG | 0.488640 | 4.1:+7892405 | MS.gene70176:CDS |
TTGATTCCGATCCATCCATA+AGG | 0.489103 | 4.1:+7901013 | MS.gene70176:CDS |
ACTTAGTTTGGAGAGGGAGA+TGG | 0.489835 | 4.1:+7891689 | MS.gene70176:CDS |
AGTGGTCTTCATATTCTTCT+CGG | 0.490287 | 4.1:+7894443 | MS.gene70176:CDS |
TCTTATCCCACTTCTGGTCC+AGG | 0.490487 | 4.1:-7898823 | None:intergenic |
ACGAGTCGTGCATATTGAGT+TGG | 0.490817 | 4.1:-7899819 | None:intergenic |
GGAGTTGGAGAAAGTGGAAT+GGG | 0.490988 | 4.1:+7900925 | MS.gene70176:CDS |
CACTTCAAGAACTGAAACAC+TGG | 0.491328 | 4.1:+7898119 | MS.gene70176:CDS |
TCCTTCTCAGGTGTATATGG+AGG | 0.493263 | 4.1:-7901039 | None:intergenic |
CCTTCTCAGGTGTATATGGA+GGG | 0.495634 | 4.1:-7901038 | None:intergenic |
TCTACAATTTGTGAAATTTG+TGG | 0.495846 | 4.1:+7892023 | MS.gene70176:CDS |
GGAACATCCAATAAGATAGT+TGG | 0.497071 | 4.1:-7900009 | None:intergenic |
CAACACAACTCCTAGTGGTT+CGG | 0.497401 | 4.1:-7898280 | None:intergenic |
GAAGATAGGTTAATTGAACT+TGG | 0.499595 | 4.1:+7891930 | MS.gene70176:CDS |
CCTCCAAGCTCAAGAATCAC+TGG | 0.501775 | 4.1:-7899408 | None:intergenic |
TTAGTTCGGGTATTCTGTAC+GGG | 0.502395 | 4.1:-7892341 | None:intergenic |
CTGCACTCCTGGACCAGAAG+TGG | 0.504845 | 4.1:+7898816 | MS.gene70176:CDS |
AAGTGGGCTGTAGAATGTAC+AGG | 0.509801 | 4.1:+7892362 | MS.gene70176:CDS |
AGAGCCAATCTTACAAGCGT+TGG | 0.514311 | 4.1:-7899654 | None:intergenic |
AAACAATGAGCAACTGAAGA+AGG | 0.517946 | 4.1:+7900250 | MS.gene70176:CDS |
AGTGGAATGGGTTGCTACCA+TGG | 0.521895 | 4.1:+7900937 | MS.gene70176:CDS |
GGATGTTCCACAAGAAGCTA+TGG | 0.525082 | 4.1:+7900023 | MS.gene70176:CDS |
TGCATAACCATAGCTTCTTG+TGG | 0.525176 | 4.1:-7900030 | None:intergenic |
GAGGATAATAGCTGGCAAAT+GGG | 0.531521 | 4.1:+7899569 | MS.gene70176:CDS |
CTGAGGGAAAGAACTGTCAA+TGG | 0.535579 | 4.1:+7892116 | MS.gene70176:CDS |
ATGGCGGATTTCCCAATTGG+AGG | 0.535856 | 4.1:+7897529 | MS.gene70176:CDS |
TCTGCAGTAAGAGTTGTTGA+AGG | 0.537984 | 4.1:+7898776 | MS.gene70176:CDS |
CATCACATGAAGATTTCGCC+TGG | 0.539665 | 4.1:-7898093 | None:intergenic |
CCAGTGATTCTTGAGCTTGG+AGG | 0.540889 | 4.1:+7899408 | MS.gene70176:CDS |
CTTTCTCCAACTCCTCCAAA+AGG | 0.541724 | 4.1:-7900916 | None:intergenic |
ACACTGGATGAAACCTGAAA+AGG | 0.549602 | 4.1:+7898135 | MS.gene70176:CDS |
CAAAACTTTGTAGGACCTAA+CGG | 0.551551 | 4.1:+7891861 | MS.gene70176:CDS |
ACTATGCTTGTGCACTCAAG+TGG | 0.552545 | 4.1:+7891985 | MS.gene70176:CDS |
AGGAGTTGGAGAAAGTGGAA+TGG | 0.554064 | 4.1:+7900924 | MS.gene70176:CDS |
GTATTTGGATGATCTTGTGC+GGG | 0.555740 | 4.1:-7892149 | None:intergenic |
CGGTGTTTGTGCTTTAACAG+TGG | 0.567441 | 4.1:+7894466 | MS.gene70176:CDS |
GGAAGTAAAGTTGGATGGCA+AGG | 0.568027 | 4.1:+7891812 | MS.gene70176:CDS |
GATGTTAGAAGAGAGAGAGA+AGG | 0.568384 | 4.1:+7897562 | MS.gene70176:CDS |
ATCTCCCTCTCCAAACTAAG+TGG | 0.568520 | 4.1:-7891687 | None:intergenic |
ATCACCACTTAGTTTGGAGA+GGG | 0.568877 | 4.1:+7891683 | MS.gene70176:CDS |
TATGGAGGGTACCTTATGGA+TGG | 0.573766 | 4.1:-7901024 | None:intergenic |
TATCAAAAGAGAACTTTCCA+TGG | 0.574054 | 4.1:-7900954 | None:intergenic |
GCTTTAGTATAATAAAATCA+AGG | 0.574080 | 4.1:+7900198 | MS.gene70176:CDS |
TATAAGCCATGCAAGGGTGA+TGG | 0.576779 | 4.1:-7892411 | None:intergenic |
CATTTCCGCGGGCAACGCAG+TGG | 0.577408 | 4.1:+7898679 | MS.gene70176:CDS |
CTCAAGTGGTTTATCAACCA+TGG | 0.579150 | 4.1:+7891999 | MS.gene70176:CDS |
TACAGAATACCCGAACTAAG+TGG | 0.582067 | 4.1:+7892345 | MS.gene70176:CDS |
CTGCAGTAAGAGTTGTTGAA+GGG | 0.582509 | 4.1:+7898777 | MS.gene70176:CDS |
TATAGCTCCTCGTGTTGGAA+AGG | 0.584472 | 4.1:+7892430 | MS.gene70176:CDS |
TCTTCGACAATAAAATTCAA+CGG | 0.585056 | 4.1:-7892311 | None:intergenic |
AGAAGCTATGGTTATGCAAG+AGG | 0.586940 | 4.1:+7900035 | MS.gene70176:CDS |
GCAACTGAAGAAGGATTATG+TGG | 0.588911 | 4.1:+7900259 | MS.gene70176:CDS |
CCCTCCATATACACCTGAGA+AGG | 0.591816 | 4.1:+7901038 | MS.gene70176:CDS |
TGGCTTATAGCTCCTCGTGT+TGG | 0.591993 | 4.1:+7892425 | MS.gene70176:CDS |
TGGTGTGGATCCTGATGCTG+TGG | 0.593862 | 4.1:+7892172 | MS.gene70176:CDS |
AGGGTACCTTATGGATGGAT+CGG | 0.593890 | 4.1:-7901019 | None:intergenic |
GAGATTGTGTCCGAACCACT+AGG | 0.597033 | 4.1:+7898270 | MS.gene70176:CDS |
AGTCATTGGAGCCATTTCCG+CGG | 0.600289 | 4.1:+7898667 | MS.gene70176:CDS |
TTGGTGCAGGTTGCAACTCG+TGG | 0.603431 | 4.1:+7900889 | MS.gene70176:intron |
ACTGCGAGGAGGATAATAGC+TGG | 0.604969 | 4.1:+7899561 | MS.gene70176:CDS |
CAAAACCACTGCGTTGCCCG+CGG | 0.605069 | 4.1:-7898684 | None:intergenic |
GTGAAGAGATATGCAGCCAA+AGG | 0.606873 | 4.1:-7900227 | None:intergenic |
GAGGAGCTATAAGCCATGCA+AGG | 0.608062 | 4.1:-7892418 | None:intergenic |
GTGTTATGCAACTCTATCTG+TGG | 0.608199 | 4.1:+7897403 | MS.gene70176:CDS |
AAAAGAATATGAAGCACTGA+GGG | 0.609832 | 4.1:+7892100 | MS.gene70176:CDS |
ACTCGTGAAACTCTTGAATG+AGG | 0.610650 | 4.1:+7899836 | MS.gene70176:CDS |
TGGACAAGATATCTTCTGGA+GGG | 0.613322 | 4.1:+7900279 | MS.gene70176:CDS |
ACCCCAGTTATAGAAAGCAA+AGG | 0.614358 | 4.1:+7891789 | MS.gene70176:CDS |
TGCACTCCTGGACCAGAAGT+GGG | 0.619653 | 4.1:+7898817 | MS.gene70176:CDS |
AATCACCACTTAGTTTGGAG+AGG | 0.622416 | 4.1:+7891682 | MS.gene70176:CDS |
TGAAATTTCAGTTCACTGCG+AGG | 0.626166 | 4.1:+7899547 | MS.gene70176:intron |
AAAGGGGAAGTAAAGTTGGA+TGG | 0.628475 | 4.1:+7891807 | MS.gene70176:CDS |
TACTCAGGTAGTGCTAGAGT+AGG | 0.631910 | 4.1:+7899348 | MS.gene70176:intron |
TGCAGTAAGAGTTGTTGAAG+GGG | 0.632245 | 4.1:+7898778 | MS.gene70176:CDS |
AGATCATCCAAATACTGGTG+TGG | 0.637998 | 4.1:+7892157 | MS.gene70176:CDS |
AGGAGCTATAAGCCATGCAA+GGG | 0.640745 | 4.1:-7892417 | None:intergenic |
AGACAAAGAGCTACGAATGG+CGG | 0.643657 | 4.1:+7897513 | MS.gene70176:CDS |
CAGAATAGCTGACTTCAACA+AGG | 0.643926 | 4.1:+7892064 | MS.gene70176:CDS |
ACAGAATACCCGAACTAAGT+GGG | 0.647615 | 4.1:+7892346 | MS.gene70176:CDS |
ATGCTGTGGCTGCTATCCGA+AGG | 0.650141 | 4.1:+7892186 | MS.gene70176:CDS |
CACAACTAATCAGATGGGCA+AGG | 0.651324 | 4.1:+7891581 | None:intergenic |
GTGGACAAGATATCTTCTGG+AGG | 0.652280 | 4.1:+7900278 | MS.gene70176:CDS |
AGTATTTGGATGATCTTGTG+CGG | 0.657654 | 4.1:-7892150 | None:intergenic |
ATGATCAACACAACTCCTAG+TGG | 0.658303 | 4.1:-7898285 | None:intergenic |
AAGCATAGTGTACTAAAGCA+AGG | 0.669587 | 4.1:-7891971 | None:intergenic |
GGTCTTCATATTCTTCTCGG+CGG | 0.672073 | 4.1:+7894446 | MS.gene70176:CDS |
GCAAGACAAAGAGCTACGAA+TGG | 0.673266 | 4.1:+7897510 | MS.gene70176:CDS |
TGGCTGCTATCCGAAGGCAA+CGG | 0.676588 | 4.1:+7892192 | MS.gene70176:CDS |
TAAAAGAATATGAAGCACTG+AGG | 0.681117 | 4.1:+7892099 | MS.gene70176:CDS |
TCACATACCTTTCCAACACG+AGG | 0.681169 | 4.1:-7892437 | None:intergenic |
AATTTCAGTTCACTGCGAGG+AGG | 0.681260 | 4.1:+7899550 | MS.gene70176:intron |
TTGTGTTGATCATATCAACA+TGG | 0.681886 | 4.1:+7898295 | MS.gene70176:CDS |
CTTTGTAGGACCTAACGGGG+AGG | 0.687697 | 4.1:+7891866 | MS.gene70176:CDS |
CTTTAACAACAATAGCAATG+TGG | 0.690965 | 4.1:+7892259 | MS.gene70176:CDS |
GTTGCAGGAGAAACTTCTGA+TGG | 0.692797 | 4.1:-7898710 | None:intergenic |
AAACTTTGTAGGACCTAACG+GGG | 0.704808 | 4.1:+7891863 | MS.gene70176:CDS |
AGTGGGCTGTAGAATGTACA+GGG | 0.705839 | 4.1:+7892363 | MS.gene70176:CDS |
ACTAGAAGCATATATAACCG+AGG | 0.707816 | 4.1:+7897625 | MS.gene70176:CDS |
TGGGATAAGATACTTTACAC+AGG | 0.716272 | 4.1:+7898836 | MS.gene70176:CDS |
CCCAGTTATAGAAAGCAAAG+GGG | 0.726941 | 4.1:+7891791 | MS.gene70176:CDS |
TGCGCTGAGTCTGATAAACG+AGG | 0.729647 | 4.1:+7891738 | MS.gene70176:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 7891594 | 7901134 | 7891594 | ID=MS.gene70176 |
chr4.1 | mRNA | 7891594 | 7901134 | 7891594 | ID=MS.gene70176.t1;Parent=MS.gene70176 |
chr4.1 | exon | 7891594 | 7892451 | 7891594 | ID=MS.gene70176.t1.exon1;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7891594 | 7892451 | 7891594 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7894431 | 7894505 | 7894431 | ID=MS.gene70176.t1.exon2;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7894431 | 7894505 | 7894431 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7894857 | 7894876 | 7894857 | ID=MS.gene70176.t1.exon3;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7894857 | 7894876 | 7894857 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7897403 | 7897646 | 7897403 | ID=MS.gene70176.t1.exon4;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7897403 | 7897646 | 7897403 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7898088 | 7898156 | 7898088 | ID=MS.gene70176.t1.exon5;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7898088 | 7898156 | 7898088 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7898234 | 7898330 | 7898234 | ID=MS.gene70176.t1.exon6;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7898234 | 7898330 | 7898234 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7898651 | 7898857 | 7898651 | ID=MS.gene70176.t1.exon7;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7898651 | 7898857 | 7898651 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7899355 | 7899470 | 7899355 | ID=MS.gene70176.t1.exon8;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7899355 | 7899470 | 7899355 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7899558 | 7899662 | 7899558 | ID=MS.gene70176.t1.exon9;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7899558 | 7899662 | 7899558 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7899738 | 7899910 | 7899738 | ID=MS.gene70176.t1.exon10;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7899738 | 7899910 | 7899738 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7899999 | 7900089 | 7899999 | ID=MS.gene70176.t1.exon11;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7899999 | 7900089 | 7899999 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7900179 | 7900328 | 7900179 | ID=MS.gene70176.t1.exon12;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7900179 | 7900328 | 7900179 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
chr4.1 | exon | 7900898 | 7901134 | 7900898 | ID=MS.gene70176.t1.exon13;Parent=MS.gene70176.t1 |
chr4.1 | CDS | 7900898 | 7901134 | 7900898 | ID=cds.MS.gene70176.t1;Parent=MS.gene70176.t1 |
Gene Sequence |
Protein sequence |