AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035576

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035576.t1 MTR_4g131180 99.194 496 4 0 1 496 1 496 0.0 1013
MS.gene035576.t1 MTR_1g014320 90.121 496 49 0 1 496 1 496 0.0 941
MS.gene035576.t1 MTR_4g131180 99.129 459 4 0 1 459 1 459 0.0 939
MS.gene035576.t1 MTR_2g067660 31.130 469 306 7 22 482 53 512 3.13e-71 236
MS.gene035576.t1 MTR_3g078490 34.820 471 280 10 17 469 39 500 1.24e-61 211
MS.gene035576.t1 MTR_3g078550 33.898 472 283 11 17 469 9 470 2.52e-60 206
MS.gene035576.t1 MTR_8g064170 31.352 488 307 10 21 493 66 540 3.10e-60 207
MS.gene035576.t1 MTR_4g106510 31.838 468 298 9 17 469 9 470 2.07e-55 193
MS.gene035576.t1 MTR_8g083530 27.835 485 320 8 17 485 24 494 8.18e-55 191
MS.gene035576.t1 MTR_3g078550 34.163 442 262 11 47 469 9 440 2.89e-54 189
MS.gene035576.t1 MTR_4g107040 28.571 497 317 10 17 493 65 543 1.34e-52 186
MS.gene035576.t1 MTR_3g078170 29.508 488 316 11 21 493 67 541 1.76e-52 186
MS.gene035576.t1 MTR_6g086340 29.363 487 321 10 17 489 21 498 4.15e-52 184
MS.gene035576.t1 MTR_6g086300 28.689 488 312 10 17 485 23 493 1.46e-51 182
MS.gene035576.t1 MTR_6g086300 28.689 488 312 10 17 485 23 493 1.46e-51 182
MS.gene035576.t1 MTR_2g034160 29.314 481 302 13 29 485 62 528 4.13e-47 172
MS.gene035576.t1 MTR_2g009750 29.400 483 310 12 22 487 20 488 4.00e-46 168
MS.gene035576.t1 MTR_2g009750 29.400 483 310 12 22 487 21 489 4.50e-46 168
MS.gene035576.t1 MTR_2g009750 29.339 484 310 12 22 487 21 490 4.96e-46 168
MS.gene035576.t1 MTR_8g083520 27.044 477 301 9 17 485 15 452 3.09e-45 165
MS.gene035576.t1 MTR_8g064170 28.689 488 288 11 21 493 66 508 1.20e-44 164
MS.gene035576.t1 MTR_4g093170 27.673 477 319 10 22 483 48 513 1.08e-43 162
MS.gene035576.t1 MTR_3g078490 35.398 339 200 8 17 343 9 340 2.26e-40 149
MS.gene035576.t1 MTR_3g078170 29.648 398 261 9 21 407 67 456 2.02e-39 149
MS.gene035576.t1 MTR_8g083520 29.446 343 206 5 148 485 61 372 3.34e-38 144
MS.gene035576.t1 MTR_1399s0020 29.118 340 187 6 160 493 55 346 1.58e-34 133
MS.gene035576.t1 MTR_3g078170 30.599 317 205 6 21 330 67 375 2.52e-32 128
MS.gene035576.t1 MTR_3g078170 30.599 317 205 6 21 330 67 375 3.01e-32 128
MS.gene035576.t1 MTR_1222s0010 31.129 363 223 13 56 407 6 352 1.04e-30 126
MS.gene035576.t1 MTR_2g042330 24.280 486 342 14 19 490 25 498 1.42e-30 124
MS.gene035576.t1 MTR_1690s0010 27.405 343 236 6 17 353 10 345 3.09e-30 121
MS.gene035576.t1 MTR_8g083530 26.829 328 215 5 17 332 24 338 3.47e-30 121
MS.gene035576.t1 MTR_2g097950 26.966 445 281 15 44 467 14 435 1.91e-26 112
MS.gene035576.t1 MTR_3g088150 25.764 458 313 12 39 485 7 448 1.17e-25 110
MS.gene035576.t1 MTR_8g094600 26.107 429 282 13 53 467 74 481 1.84e-25 110
MS.gene035576.t1 MTR_1g029840 25.231 432 298 10 46 468 14 429 7.34e-25 107
MS.gene035576.t1 MTR_1g029840 25.513 439 300 11 41 468 7 429 7.41e-25 107
MS.gene035576.t1 MTR_8g076480 26.118 425 287 11 53 467 14 421 1.02e-22 101
MS.gene035576.t1 MTR_2g097950 24.829 439 263 14 44 467 14 400 6.50e-18 86.7
MS.gene035576.t1 MTR_1314s0010 27.545 334 205 10 158 468 1 320 2.32e-17 84.0
MS.gene035576.t1 MTR_4g065040 28.618 304 196 11 158 448 105 400 4.90e-16 80.9
MS.gene035576.t1 MTR_4g107940 25.070 355 232 13 22 360 57 393 3.35e-13 72.4
MS.gene035576.t1 MTR_4g107940 25.070 355 232 13 22 360 57 393 4.20e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035576.t1 AT2G24270 89.718 496 51 0 1 496 41 536 0.0 939
MS.gene035576.t1 AT2G24270 89.718 496 51 0 1 496 1 496 0.0 939
MS.gene035576.t1 AT2G24270 89.718 496 51 0 1 496 1 496 0.0 938
MS.gene035576.t1 AT2G24270 89.718 496 51 0 1 496 1 496 0.0 938
MS.gene035576.t1 AT1G74920 34.990 483 283 12 17 477 9 482 2.66e-70 233
MS.gene035576.t1 AT1G74920 34.783 483 279 13 17 477 9 477 4.20e-68 227
MS.gene035576.t1 AT1G79440 31.130 469 306 6 22 482 59 518 2.31e-65 220
MS.gene035576.t1 AT3G48170 30.913 482 304 12 17 477 9 482 4.53e-61 208
MS.gene035576.t1 AT3G48000 30.426 493 305 11 21 493 63 537 2.86e-58 202
MS.gene035576.t1 AT1G23800 30.642 483 315 9 22 493 60 533 5.62e-58 201
MS.gene035576.t1 AT3G24503 28.778 483 325 8 17 488 21 495 5.98e-54 189
MS.gene035576.t1 AT3G66658 29.072 485 315 13 3 467 35 510 1.63e-46 170
MS.gene035576.t1 AT3G66658 28.980 490 309 14 3 467 35 510 3.88e-46 170
MS.gene035576.t1 AT2G14170 28.512 477 315 11 22 483 11 476 5.10e-43 159
MS.gene035576.t1 AT2G14170 28.692 474 314 10 22 482 120 582 2.52e-42 159
MS.gene035576.t1 AT2G14170 28.512 477 315 11 22 483 120 585 4.41e-42 159
MS.gene035576.t1 AT1G23800 30.696 316 204 6 22 330 60 367 8.06e-34 132
MS.gene035576.t1 AT1G54100 24.898 490 328 13 19 487 24 494 8.19e-34 134
MS.gene035576.t1 AT1G54100 24.898 490 328 13 19 487 24 494 8.19e-34 134
MS.gene035576.t1 AT1G44170 25.352 426 301 12 51 468 9 425 4.31e-25 108
MS.gene035576.t1 AT1G44170 25.352 426 301 12 51 468 9 425 4.31e-25 108
MS.gene035576.t1 AT1G44170 26.814 317 223 7 158 468 49 362 8.25e-25 107
MS.gene035576.t1 AT4G34240 24.362 431 289 11 53 468 65 473 9.38e-23 102
MS.gene035576.t1 AT4G34240 24.362 431 289 11 53 468 80 488 9.53e-23 102
MS.gene035576.t1 AT4G34240 26.814 317 223 6 158 468 33 346 8.01e-21 95.1
MS.gene035576.t1 AT4G36250 27.245 323 215 10 158 467 108 423 3.28e-20 94.0
MS.gene035576.t1 AT5G62530 23.714 350 235 14 19 353 56 388 1.70e-14 76.3
MS.gene035576.t1 AT4G34240 24.127 315 204 9 53 354 80 372 5.32e-14 73.9

Find 136 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTCTCTCTTGTATTCT+TGG 0.177591 8.4:-2184200 None:intergenic
CACCAAGCCTTCAATGAAAT+TGG 0.219619 8.4:-2184145 None:intergenic
CTTGGAAGTGAGGCAATATT+TGG 0.238356 8.4:-2182269 None:intergenic
GTTGCTGCAAACATTATAAA+AGG 0.248305 8.4:+2183500 MS.gene035576:CDS
TCTCATTTGGCCTTTGCTAT+TGG 0.249553 8.4:+2184224 MS.gene035576:CDS
CTCCCAAGAGGAAGTTAATA+AGG 0.272304 8.4:+2181866 MS.gene035576:CDS
GGTCTAATCAGCTGTGTTAC+TGG 0.308486 8.4:+2183223 MS.gene035576:CDS
TGCTAGCAACTTTGGACTTC+AGG 0.313262 8.4:+2184350 MS.gene035576:CDS
TATTGAGGCTTTCTTGTAGT+AGG 0.325145 8.4:-2180932 None:intergenic
ACAGAATTGATCCTAATTAC+AGG 0.326513 8.4:-2184303 None:intergenic
GATTCCGTTACAAATGGAAT+TGG 0.329253 8.4:+2183430 MS.gene035576:CDS
GGTATAAAAGACAGTGGAAT+TGG 0.332029 8.4:+2185254 MS.gene035576:CDS
TATTTGGTCCTTTCATTTCC+CGG 0.335147 8.4:-2182253 None:intergenic
CTTTGCTATTGGATAATGTT+AGG 0.338290 8.4:+2184235 MS.gene035576:CDS
TTGCAGCTTTGTGTTCTTTG+AGG 0.338729 8.4:-2181977 None:intergenic
ATTGCTCCTGCACTCATTGC+TGG 0.338801 8.4:+2182656 MS.gene035576:CDS
GAAGAAGGAGTAAGGATTCT+TGG 0.343223 8.4:+2182199 MS.gene035576:CDS
TCTTGGAGAGGGAAAGTTCT+TGG 0.345028 8.4:+2182216 MS.gene035576:CDS
GTTCATTGCTTTCACTTGGC+TGG 0.348410 8.4:+2183190 MS.gene035576:CDS
AGAGGAAGTTAATAAGGTTA+TGG 0.352924 8.4:+2181872 MS.gene035576:CDS
TGAAGATGCTGACCTTGATT+TGG 0.358975 8.4:+2183478 MS.gene035576:CDS
AACACAGCTGATTAGACCTT+TGG 0.359110 8.4:-2183218 None:intergenic
CATTGTAATGCTAGCAACTT+TGG 0.359882 8.4:+2184342 MS.gene035576:CDS
ATCCAGGAGTGAACTGTATA+AGG 0.361239 8.4:+2183281 MS.gene035576:CDS
ATCCTAATTACAGGCAAAAC+TGG 0.370576 8.4:-2184294 None:intergenic
TCCCATGCAATTCTCATGTC+TGG 0.371621 8.4:-2184258 None:intergenic
CATGGTTCATTGCTTTCACT+TGG 0.375400 8.4:+2183186 MS.gene035576:CDS
AGATTGACTGGATAGTTAAA+AGG 0.381527 8.4:-2182620 None:intergenic
AGCCAATTTCATTGAAGGCT+TGG 0.386673 8.4:+2184143 MS.gene035576:CDS
AAATGATCTGGCCCACGAGC+TGG 0.391227 8.4:-2184996 None:intergenic
ATTAGTGATGCAATGGAATC+AGG 0.394652 8.4:+2184951 MS.gene035576:CDS
ATGGCTAAGATCACTCCTAA+TGG 0.394955 8.4:-2182593 None:intergenic
TTTATAAGTTTCACCTGAAA+GGG 0.396189 8.4:-2185020 None:intergenic
TAACCTTATTAACTTCCTCT+TGG 0.406814 8.4:-2181869 None:intergenic
GGAATCAGTTGCTGATAGTT+TGG 0.407889 8.4:+2184032 MS.gene035576:CDS
TCATCAGCCAATTTCATTGA+AGG 0.421085 8.4:+2184138 MS.gene035576:CDS
GGTTGTAAGATCTGGTGATT+TGG 0.422138 8.4:+2182162 MS.gene035576:intron
TACTGCTGTTAAGGTTGTCT+TGG 0.427731 8.4:+2184005 MS.gene035576:CDS
GCTGATGATTCTGATACAAC+TGG 0.428644 8.4:-2184123 None:intergenic
ATTGCATGGGAGGAGCCATT+TGG 0.428782 8.4:+2184270 MS.gene035576:CDS
TCAGAGGTGTACTGCTGTTA+AGG 0.430225 8.4:+2183996 MS.gene035576:CDS
TCAATGAAGGTTGTAAGATC+TGG 0.431004 8.4:+2182154 MS.gene035576:intron
AACCTTATTAACTTCCTCTT+GGG 0.435727 8.4:-2181868 None:intergenic
AGGATATAAATTACCTGAGT+TGG 0.437333 8.4:-2182701 None:intergenic
AGCTTCACTGGTGGAGATAC+CGG 0.437992 8.4:+2183380 MS.gene035576:intron
AGAGAGAAGGGAATCTCATT+TGG 0.440505 8.4:+2184211 MS.gene035576:CDS
AATGATCTGGCCCACGAGCT+GGG 0.441052 8.4:-2184995 None:intergenic
TGTCATCATGTTTATGCTGT+TGG 0.446435 8.4:-2185291 None:intergenic
ACTGGCAAAGGCTCGGAGAT+TGG 0.449931 8.4:+2183241 MS.gene035576:CDS
GCCAAGCCCTTCTTATACCA+TGG 0.453850 8.4:+2185340 MS.gene035576:CDS
TGGCTAAGATCACTCCTAAT+GGG 0.455898 8.4:-2182592 None:intergenic
CGGCATTGCAATTTCAAAGA+AGG 0.458206 8.4:+2183400 MS.gene035576:CDS
ACACAGCTGATTAGACCTTT+GGG 0.458219 8.4:-2183217 None:intergenic
CTTCTTTGAAATTGCAATGC+CGG 0.461936 8.4:-2183399 None:intergenic
ATTGAGGCTTTCTTGTAGTA+GGG 0.466187 8.4:-2180931 None:intergenic
TTACCTTGAACTTTGTATTG+AGG 0.467120 8.4:-2180947 None:intergenic
ATTCCGTTACAAATGGAATT+GGG 0.467485 8.4:+2183431 MS.gene035576:CDS
ACCTGAAAGGGAAAATGATC+TGG 0.469238 8.4:-2185008 None:intergenic
AAGCCTCAATACAAAGTTCA+AGG 0.469357 8.4:+2180944 MS.gene035576:CDS
GTTTCTTACTGTGCTGAAGA+AGG 0.471237 8.4:+2182184 MS.gene035576:CDS
AGGATCAATTCTGTTGAAGA+AGG 0.476795 8.4:+2184312 MS.gene035576:CDS
ACAGGCAAAACTGGTCCAAA+TGG 0.487090 8.4:-2184285 None:intergenic
AATACTATGCTGATGGAGAA+TGG 0.489915 8.4:+2180870 MS.gene035576:CDS
TTTGAGACAGCAAGATTGAC+TGG 0.493697 8.4:-2182632 None:intergenic
TACATCTCCGTCTAAAATCT+CGG 0.493728 8.4:-2180843 None:intergenic
ATATAAATTACCTGAGTTGG+AGG 0.495354 8.4:-2182698 None:intergenic
TCACTCCTGGATGCATTGTA+AGG 0.496013 8.4:-2183270 None:intergenic
TATTAGCCCATGGTATAAGA+AGG 0.496914 8.4:-2185347 None:intergenic
CAAAATCAGCACAAAAGTCA+TGG 0.497875 8.4:+2181901 MS.gene035576:CDS
TGTTAAGGTTGTCTTGGTAA+TGG 0.498386 8.4:+2184011 MS.gene035576:CDS
CACCTTATACAGTTCACTCC+TGG 0.499695 8.4:-2183283 None:intergenic
TTGCTATCCGATAGCTTCAC+TGG 0.502581 8.4:+2183368 MS.gene035576:intron
AGCTGTTGCAGCTCTTCACA+TGG 0.503024 8.4:+2183168 MS.gene035576:CDS
GGAGTAAGGATTCTTGGAGA+GGG 0.504125 8.4:+2182205 MS.gene035576:CDS
CAAAGACCCCACTTTGGAAG+AGG 0.506615 8.4:+2181925 MS.gene035576:CDS
ATCAGCTGTGTTACTGGCAA+AGG 0.512241 8.4:+2183229 MS.gene035576:CDS
TGTGCTCAAGCCTCCAACTC+AGG 0.519656 8.4:+2182688 MS.gene035576:CDS
AGGAGTAAGGATTCTTGGAG+AGG 0.519697 8.4:+2182204 MS.gene035576:CDS
AGGCATGATTCCGTTACAAA+TGG 0.524495 8.4:+2183424 MS.gene035576:CDS
GAATGGAAGAAATCTACCTC+TGG 0.525185 8.4:+2180887 MS.gene035576:CDS
GTGATATCACAGTCATCCTC+AGG 0.527858 8.4:-2184099 None:intergenic
CCAAGCCCTTCTTATACCAT+GGG 0.527974 8.4:+2185341 MS.gene035576:CDS
CCTCCCAATTCCATTTGTAA+CGG 0.528245 8.4:-2183434 None:intergenic
GCTTTGCTATTTCTTTGACT+AGG 0.532020 8.4:-2182010 None:intergenic
AGACAGTGGAATTGGATCAC+AGG 0.536723 8.4:+2185262 MS.gene035576:CDS
GAATTTCCAGCAATGAGTGC+AGG 0.537751 8.4:-2182662 None:intergenic
ACTGTGCTGAAGAAGGAGTA+AGG 0.539338 8.4:+2182191 MS.gene035576:CDS
ATAAATTCTGCCCCAGCTCG+TGG 0.539359 8.4:+2184984 MS.gene035576:CDS
TGCCAAGAATACAAGAGAGA+AGG 0.540006 8.4:+2184198 MS.gene035576:CDS
GCCAAGAATACAAGAGAGAA+GGG 0.542461 8.4:+2184199 MS.gene035576:CDS
GTGAATGATGCTAAACAGAA+AGG 0.552242 8.4:+2184165 MS.gene035576:CDS
ATTGCAATTTCAAAGAAGGC+AGG 0.554951 8.4:+2183404 MS.gene035576:CDS
CTGTGTTACTGGCAAAGGCT+CGG 0.559016 8.4:+2183234 MS.gene035576:CDS
CAAATATTGCCTCACTTCCA+AGG 0.562000 8.4:+2182270 MS.gene035576:CDS
GTATACAAATACTATGCTGA+TGG 0.562988 8.4:+2180863 MS.gene035576:CDS
GCTGCAAACATTATAAAAGG+AGG 0.564563 8.4:+2183503 MS.gene035576:CDS
TGAAATAGACCTTGGAAGTG+AGG 0.565780 8.4:-2182279 None:intergenic
GACAGTGGAATTGGATCACA+GGG 0.567866 8.4:+2185263 MS.gene035576:CDS
TGTTTGCAGCAACCAAATCA+AGG 0.571187 8.4:-2183490 None:intergenic
ATGATCTGGCCCACGAGCTG+GGG 0.571612 8.4:-2184994 None:intergenic
GTTCAGCCCTCTTCCAAAGT+GGG 0.573357 8.4:-2181932 None:intergenic
GACTTCCTTACAATGCATCC+AGG 0.575105 8.4:+2183265 MS.gene035576:CDS
ATTAGCCCATGGTATAAGAA+GGG 0.576461 8.4:-2185346 None:intergenic
CATGGGCAAAGACCCCACTT+TGG 0.577477 8.4:+2181919 MS.gene035576:CDS
GGCCAGACATGAGAATTGCA+TGG 0.578690 8.4:+2184256 MS.gene035576:CDS
CTGATGATTCTGATACAACT+GGG 0.582007 8.4:-2184122 None:intergenic
GGTTGAGAAAGTGAAGGCTA+AGG 0.585982 8.4:+2184053 MS.gene035576:CDS
AAAATCAGCACAAAAGTCAT+GGG 0.588574 8.4:+2181902 MS.gene035576:CDS
AAAGACCCCACTTTGGAAGA+GGG 0.592379 8.4:+2181926 MS.gene035576:CDS
AAGGTGGCAAAACTAAGTGT+TGG 0.592797 8.4:+2184072 MS.gene035576:CDS
TGGATAGTTAAAAGGCGGAA+TGG 0.594322 8.4:-2182612 None:intergenic
CCCATGGTATAAGAAGGGCT+TGG 0.597949 8.4:-2185341 None:intergenic
TAAATTCTGCCCCAGCTCGT+GGG 0.599729 8.4:+2184985 MS.gene035576:CDS
AGTTCAGCCCTCTTCCAAAG+TGG 0.601662 8.4:-2181933 None:intergenic
GCCAGACATGAGAATTGCAT+GGG 0.604840 8.4:+2184257 MS.gene035576:CDS
AATGATGATTAGTGATGCAA+TGG 0.607091 8.4:+2184944 MS.gene035576:CDS
AGTTGCTAGCATTACAATGG+TGG 0.608323 8.4:-2184338 None:intergenic
AGCAAAAGATGCAGTTACAG+AGG 0.611642 8.4:+2182034 MS.gene035576:CDS
TGAGAAAGTGAAGGCTAAGG+TGG 0.619750 8.4:+2184056 MS.gene035576:CDS
AGACATGAGAATTGCATGGG+AGG 0.621616 8.4:+2184260 MS.gene035576:CDS
TTCAGCCCTCTTCCAAAGTG+GGG 0.625906 8.4:-2181931 None:intergenic
CCATGCAGCTTGCTCCCAAG+AGG 0.628360 8.4:+2181854 MS.gene035576:intron
AATATGCTATTATTAGCCCA+TGG 0.629261 8.4:-2185357 None:intergenic
CCGTTACAAATGGAATTGGG+AGG 0.629301 8.4:+2183434 MS.gene035576:CDS
TAGTTTGGTTGAGAAAGTGA+AGG 0.632684 8.4:+2184047 MS.gene035576:CDS
AGGGCTTGGCAAGTTTATCA+CGG 0.633923 8.4:-2185327 None:intergenic
CAAAGTTGCTAGCATTACAA+TGG 0.639762 8.4:-2184341 None:intergenic
ACTAAGTGTTGGACCACCTG+AGG 0.649624 8.4:+2184083 MS.gene035576:CDS
GAGGGCTGAACTTCTTCACA+AGG 0.649776 8.4:+2181944 MS.gene035576:CDS
CTATCCGATAGCTTCACTGG+TGG 0.653530 8.4:+2183371 MS.gene035576:intron
TCAGGGATGTGTGTTCACAA+AGG 0.663222 8.4:+2184908 MS.gene035576:intron
TTGACTGGATAGTTAAAAGG+CGG 0.663722 8.4:-2182617 None:intergenic
TGACAGGGTATAAAAGACAG+TGG 0.671884 8.4:+2185248 MS.gene035576:intron
CTAACATTATCCAATAGCAA+AGG 0.679429 8.4:-2184234 None:intergenic
ATATCACAGTCATCCTCAGG+TGG 0.693050 8.4:-2184096 None:intergenic
TGATGATTCTGATACAACTG+GGG 0.745364 8.4:-2184121 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTTCAATGA+AGG + chr8.4:2182141-2182160 MS.gene035576:intron 10.0%
!! ACTTTATAAAGTCAATAAAT+TGG + chr8.4:2182382-2182401 MS.gene035576:intron 15.0%
!! ATTAAATACATGAATTTAAC+GGG - chr8.4:2181426-2181445 None:intergenic 15.0%
!! ATTTACTTCATAAATATAAC+CGG + chr8.4:2183603-2183622 MS.gene035576:intron 15.0%
!! CATATCATTAAATTAATGTT+TGG - chr8.4:2184759-2184778 None:intergenic 15.0%
!! CATTAAATACATGAATTTAA+CGG - chr8.4:2181427-2181446 None:intergenic 15.0%
!! TACAAAGTAACTAAAATAAA+AGG - chr8.4:2180999-2181018 None:intergenic 15.0%
!!! TTTAATTTTTTCATGAAAAG+TGG + chr8.4:2183973-2183992 MS.gene035576:intron 15.0%
!!! TTTATTTTGGTTTCTTTTAA+CGG - chr8.4:2183072-2183091 None:intergenic 15.0%
!!! TTTTGTTGTTTTTGTAATTT+TGG - chr8.4:2185185-2185204 None:intergenic 15.0%
!! AATACCAAATATACACAAAA+TGG - chr8.4:2185052-2185071 None:intergenic 20.0%
!! ACTTGTAAATTAAATGATCA+TGG + chr8.4:2182488-2182507 MS.gene035576:intron 20.0%
!! ATATTTATGAAGTAAATGCA+TGG - chr8.4:2183600-2183619 None:intergenic 20.0%
!! ATTGTAAAGAATCATCAAAA+CGG - chr8.4:2181597-2181616 None:intergenic 20.0%
!! ATTTAATGATATGACGATTA+AGG + chr8.4:2184766-2184785 MS.gene035576:intron 20.0%
!! CATGTTAAATAAATTTACCT+CGG + chr8.4:2181479-2181498 MS.gene035576:intron 20.0%
!! CTTATTAAGAAAACAGTTTA+TGG - chr8.4:2182913-2182932 None:intergenic 20.0%
!! GTAAATTTATTTAACATGCT+TGG - chr8.4:2181477-2181496 None:intergenic 20.0%
!! TTAGCAGTTATATGAATAAA+CGG - chr8.4:2183820-2183839 None:intergenic 20.0%
!! TTGCAATTTAAATACATTCA+TGG - chr8.4:2183641-2183660 None:intergenic 20.0%
!! TTTGTGTATATTTGGTATTA+CGG + chr8.4:2185053-2185072 MS.gene035576:intron 20.0%
!!! AAACTCATTTTAGTATTAGA+AGG - chr8.4:2184436-2184455 None:intergenic 20.0%
!!! AACTCAAACTATTTTCATAT+AGG + chr8.4:2182887-2182906 MS.gene035576:intron 20.0%
!!! CTGACATAAACTTTTTATTT+TGG - chr8.4:2183085-2183104 None:intergenic 20.0%
!!! GACTTCAAAATTTTATAACA+AGG + chr8.4:2181113-2181132 MS.gene035576:intron 20.0%
!!! TACTAAAATGAGTTTAGTTT+TGG + chr8.4:2184441-2184460 MS.gene035576:intron 20.0%
!!! TCTTATTGTTTTATTTTGCT+TGG + chr8.4:2182528-2182547 MS.gene035576:intron 20.0%
!!! TTAATGTTTGGTTCTAATTT+CGG - chr8.4:2184747-2184766 None:intergenic 20.0%
! AATATAAGATGAATGTTGCA+TGG + chr8.4:2183896-2183915 MS.gene035576:intron 25.0%
! ACTAACAAAAGATACATTTG+AGG + chr8.4:2183740-2183759 MS.gene035576:intron 25.0%
! ACTTGAAAACAAAAGAGAAA+GGG - chr8.4:2180976-2180995 None:intergenic 25.0%
! AGAAAACAACTATGTTCAAT+AGG + chr8.4:2181808-2181827 MS.gene035576:intron 25.0%
! AGAAATGAAGTTATAAGGAA+TGG + chr8.4:2181713-2181732 MS.gene035576:intron 25.0%
! AGATACTGTTAAAAACGTTT+AGG + chr8.4:2181189-2181208 MS.gene035576:intron 25.0%
! ATTGAACTTGAAATTGTTCA+GGG + chr8.4:2184891-2184910 MS.gene035576:intron 25.0%
! CGAGAAATTATGAAAATGAT+TGG + chr8.4:2182116-2182135 MS.gene035576:intron 25.0%
! GATACTGTTAAAAACGTTTA+GGG + chr8.4:2181190-2181209 MS.gene035576:intron 25.0%
! TAACAACATAAGTTAATGGA+TGG - chr8.4:2181330-2181349 None:intergenic 25.0%
! TCAAATAAATCAATCCAAAC+AGG + chr8.4:2183012-2183031 MS.gene035576:intron 25.0%
! TTTATAAGTTTCACCTGAAA+GGG - chr8.4:2185023-2185042 None:intergenic 25.0%
!! AATCTCTGAATTTTACGAAT+TGG + chr8.4:2181263-2181282 MS.gene035576:intron 25.0%
!! ATATGAATAAACGGTCATTT+TGG - chr8.4:2183811-2183830 None:intergenic 25.0%
!! ATTAAGCTTTTTATCGAAAC+AGG - chr8.4:2182796-2182815 None:intergenic 25.0%
!! ATTTGCAAAAGCTCTAATTA+TGG + chr8.4:2185108-2185127 MS.gene035576:intron 25.0%
!! CAAATGTTTTATCATTGACA+GGG + chr8.4:2185233-2185252 MS.gene035576:intron 25.0%
!! CAATCCATTTTGTGTATATT+TGG + chr8.4:2185045-2185064 MS.gene035576:intron 25.0%
!! TCAAATGTTTTATCATTGAC+AGG + chr8.4:2185232-2185251 MS.gene035576:intron 25.0%
!! TTAAGCTTTTTATCGAAACA+GGG - chr8.4:2182795-2182814 None:intergenic 25.0%
!! TTTTACTGTGTGTTTGATTA+TGG + chr8.4:2184559-2184578 MS.gene035576:intron 25.0%
!! TTTTATAAGTTTCACCTGAA+AGG - chr8.4:2185024-2185043 None:intergenic 25.0%
!!! AAAACTGATTTTGACATGTT+TGG - chr8.4:2184697-2184716 None:intergenic 25.0%
!!! TATGAATAAACGGTCATTTT+GGG - chr8.4:2183810-2183829 None:intergenic 25.0%
AAAATCAGCACAAAAGTCAT+GGG + chr8.4:2181902-2181921 MS.gene035576:CDS 30.0%
AAACACACAGTAAAAACGTT+TGG - chr8.4:2184554-2184573 None:intergenic 30.0%
AACCTTATTAACTTCCTCTT+GGG - chr8.4:2181871-2181890 None:intergenic 30.0%
AAGCAACTATGTATGTTTAC+TGG + chr8.4:2181084-2181103 MS.gene035576:intron 30.0%
AAGTGGATAGTATGAGAATA+TGG - chr8.4:2182764-2182783 None:intergenic 30.0%
AATGATGATTAGTGATGCAA+TGG + chr8.4:2184944-2184963 MS.gene035576:CDS 30.0%
AATTGATTGTTGAAGTGAGA+GGG - chr8.4:2184388-2184407 None:intergenic 30.0%
ACAGAATTGATCCTAATTAC+AGG - chr8.4:2184306-2184325 None:intergenic 30.0%
ACTTTGTATGATTCTTCATG+TGG + chr8.4:2181011-2181030 MS.gene035576:intron 30.0%
AGAGGAAGTTAATAAGGTTA+TGG + chr8.4:2181872-2181891 MS.gene035576:CDS 30.0%
AGATTGACTGGATAGTTAAA+AGG - chr8.4:2182623-2182642 None:intergenic 30.0%
AGGATATAAATTACCTGAGT+TGG - chr8.4:2182704-2182723 None:intergenic 30.0%
ATAAGCTGACAACAACTTAT+TGG + chr8.4:2182928-2182947 MS.gene035576:intron 30.0%
ATATGTAGTGAAATAGACCT+TGG - chr8.4:2182290-2182309 None:intergenic 30.0%
ATTCCGTTACAAATGGAATT+GGG + chr8.4:2183431-2183450 MS.gene035576:CDS 30.0%
ATTGATGTGAGATCTACATA+GGG + chr8.4:2181545-2181564 MS.gene035576:intron 30.0%
CATGTGCATATTTGATGTTA+CGG - chr8.4:2185142-2185161 None:intergenic 30.0%
CATTGAACTTGAAATTGTTC+AGG + chr8.4:2184890-2184909 MS.gene035576:intron 30.0%
CCATTAACTTATGTTGTTAG+AGG + chr8.4:2181331-2181350 MS.gene035576:intron 30.0%
CCTCTAACAACATAAGTTAA+TGG - chr8.4:2181334-2181353 None:intergenic 30.0%
CTAACATTATCCAATAGCAA+AGG - chr8.4:2184237-2184256 None:intergenic 30.0%
GACTTGAAAACAAAAGAGAA+AGG - chr8.4:2180977-2180996 None:intergenic 30.0%
GGTGTTAAAAATGATTTCAG+AGG - chr8.4:2184723-2184742 None:intergenic 30.0%
GTATACAAATACTATGCTGA+TGG + chr8.4:2180863-2180882 MS.gene035576:CDS 30.0%
GTTGCTGCAAACATTATAAA+AGG + chr8.4:2183500-2183519 MS.gene035576:CDS 30.0%
TAACCTTATTAACTTCCTCT+TGG - chr8.4:2181872-2181891 None:intergenic 30.0%
TAATTGATTGTTGAAGTGAG+AGG - chr8.4:2184389-2184408 None:intergenic 30.0%
TATTGATGTGAGATCTACAT+AGG + chr8.4:2181544-2181563 MS.gene035576:intron 30.0%
TCATACTATCCACTTTCTTA+TGG + chr8.4:2182769-2182788 MS.gene035576:intron 30.0%
TCGTCAAAAACACTACATAT+GGG + chr8.4:2182736-2182755 MS.gene035576:intron 30.0%
TTACCTTGAACTTTGTATTG+AGG - chr8.4:2180950-2180969 None:intergenic 30.0%
TTCTTTACTGTTCCTTCTAA+TGG + chr8.4:2183122-2183141 MS.gene035576:intron 30.0%
! AATACATTCATGGATTGTAG+TGG - chr8.4:2183631-2183650 None:intergenic 30.0%
! ATATAAATTACCTGAGTTGG+AGG - chr8.4:2182701-2182720 None:intergenic 30.0%
! ATTTCCCTAATTGCTCTTTT+CGG + chr8.4:2181688-2181707 MS.gene035576:intron 30.0%
! CATTAGCTAGAACTTTTATG+AGG - chr8.4:2183043-2183062 None:intergenic 30.0%
! TAAAAGGAGGTTTTTCATAC+AGG + chr8.4:2183516-2183535 MS.gene035576:CDS 30.0%
! TCTAAAGTCACACATACTAT+CGG - chr8.4:2184514-2184533 None:intergenic 30.0%
! TGCTTTTGTTCATCCTTTTT+AGG - chr8.4:2181069-2181088 None:intergenic 30.0%
!! ATTGATTTTCAGATCCCATT+AGG + chr8.4:2182578-2182597 MS.gene035576:intron 30.0%
!! CTTTGCTATTGGATAATGTT+AGG + chr8.4:2184235-2184254 MS.gene035576:CDS 30.0%
!! GAATAAGTTAAGTGTTGCTT+AGG + chr8.4:2182083-2182102 MS.gene035576:intron 30.0%
!! TTGCTGATTCAAAAAACTCA+AGG + chr8.4:2181630-2181649 MS.gene035576:intron 30.0%
AAGCCTCAATACAAAGTTCA+AGG + chr8.4:2180944-2180963 MS.gene035576:CDS 35.0%
AATACTATGCTGATGGAGAA+TGG + chr8.4:2180870-2180889 MS.gene035576:CDS 35.0%
AATTGCATACGAAAATTCCG+AGG - chr8.4:2181499-2181518 None:intergenic 35.0%
ACTGTTAAAAACGTTTAGGG+AGG + chr8.4:2181193-2181212 MS.gene035576:intron 35.0%
AGGATCAATTCTGTTGAAGA+AGG + chr8.4:2184312-2184331 MS.gene035576:CDS 35.0%
ATATTTGGTATTACGGTCGA+TGG + chr8.4:2185060-2185079 MS.gene035576:intron 35.0%
ATCCTAATTACAGGCAAAAC+TGG - chr8.4:2184297-2184316 None:intergenic 35.0%
ATTAGTGATGCAATGGAATC+AGG + chr8.4:2184951-2184970 MS.gene035576:CDS 35.0%
ATTGAGGCTTTCTTGTAGTA+GGG - chr8.4:2180934-2180953 None:intergenic 35.0%
ATTGCAATTTCAAAGAAGGC+AGG + chr8.4:2183404-2183423 MS.gene035576:CDS 35.0%
CAAAATCAGCACAAAAGTCA+TGG + chr8.4:2181901-2181920 MS.gene035576:CDS 35.0%
CAAAGTTGCTAGCATTACAA+TGG - chr8.4:2184344-2184363 None:intergenic 35.0%
CATTGTAATGCTAGCAACTT+TGG + chr8.4:2184342-2184361 MS.gene035576:CDS 35.0%
CTCGTCAAAAACACTACATA+TGG + chr8.4:2182735-2182754 MS.gene035576:intron 35.0%
CTGATGATTCTGATACAACT+GGG - chr8.4:2184125-2184144 None:intergenic 35.0%
GATGTGATCATGTGAGAATA+TGG + chr8.4:2181033-2181052 MS.gene035576:intron 35.0%
GATTCCGTTACAAATGGAAT+TGG + chr8.4:2183430-2183449 MS.gene035576:CDS 35.0%
GCTGCAAACATTATAAAAGG+AGG + chr8.4:2183503-2183522 MS.gene035576:CDS 35.0%
GGTATAAAAGACAGTGGAAT+TGG + chr8.4:2185254-2185273 MS.gene035576:CDS 35.0%
GTCGTATAAACTGTAAGCAT+CGG - chr8.4:2181666-2181685 None:intergenic 35.0%
GTGAATGATGCTAAACAGAA+AGG + chr8.4:2184165-2184184 MS.gene035576:CDS 35.0%
TAGTTTGGTTGAGAAAGTGA+AGG + chr8.4:2184047-2184066 MS.gene035576:CDS 35.0%
TATTGAGGCTTTCTTGTAGT+AGG - chr8.4:2180935-2180954 None:intergenic 35.0%
TATTTGGTCCTTTCATTTCC+CGG - chr8.4:2182256-2182275 None:intergenic 35.0%
TCAATGAAGGTTGTAAGATC+TGG + chr8.4:2182154-2182173 MS.gene035576:intron 35.0%
TCATCAGCCAATTTCATTGA+AGG + chr8.4:2184138-2184157 MS.gene035576:CDS 35.0%
TGATGATTCTGATACAACTG+GGG - chr8.4:2184124-2184143 None:intergenic 35.0%
TGTATCTTTCGTTAGTCGTT+TGG - chr8.4:2183704-2183723 None:intergenic 35.0%
TGTCATCATGTTTATGCTGT+TGG - chr8.4:2185294-2185313 None:intergenic 35.0%
TGTTAAGGTTGTCTTGGTAA+TGG + chr8.4:2184011-2184030 MS.gene035576:CDS 35.0%
TGTTGTTAGAGGCTATAACT+TGG + chr8.4:2181342-2181361 MS.gene035576:intron 35.0%
TTGACTGGATAGTTAAAAGG+CGG - chr8.4:2182620-2182639 None:intergenic 35.0%
TTGATGTGAGATCTACATAG+GGG + chr8.4:2181546-2181565 MS.gene035576:intron 35.0%
TTTAACATGCTTGGATCTCA+AGG - chr8.4:2181468-2181487 None:intergenic 35.0%
TTTGACGAGTATCACAATGA+AGG - chr8.4:2182724-2182743 None:intergenic 35.0%
! AGCTAGAACTTTTATGAGGT+AGG - chr8.4:2183039-2183058 None:intergenic 35.0%
! ATAGTTTTCCGGGAAATGAA+AGG + chr8.4:2182245-2182264 MS.gene035576:CDS 35.0%
! ATGCATGTATCTCAGGATTT+TGG - chr8.4:2182415-2182434 None:intergenic 35.0%
! CAAGAAGCGTATGATGTAAT+TGG - chr8.4:2183863-2183882 None:intergenic 35.0%
! CTTGGTTTCAGATAGTTTTC+CGG + chr8.4:2182234-2182253 MS.gene035576:CDS 35.0%
! GCTAGAACTTTTATGAGGTA+GGG - chr8.4:2183038-2183057 None:intergenic 35.0%
! TACATCTCCGTCTAAAATCT+CGG - chr8.4:2180846-2180865 None:intergenic 35.0%
! TTGGTTTCAGATAGTTTTCC+GGG + chr8.4:2182235-2182254 MS.gene035576:CDS 35.0%
! TTTTCATGAAAAGTGGTCAG+AGG + chr8.4:2183980-2183999 MS.gene035576:intron 35.0%
!! ATGTTTGGTTCTAATTTCGG+AGG - chr8.4:2184744-2184763 None:intergenic 35.0%
!! CTTCTTTGAAATTGCAATGC+CGG - chr8.4:2183402-2183421 None:intergenic 35.0%
!! GCTTTGCTATTTCTTTGACT+AGG - chr8.4:2182013-2182032 None:intergenic 35.0%
!! GTCAGTTTTCTTAGAGTGTT+TGG - chr8.4:2183767-2183786 None:intergenic 35.0%
!! TAACGGGCAACAAAAGTTTT+TGG - chr8.4:2181410-2181429 None:intergenic 35.0%
!!! ACAAAAGTTTTTGGTCACGT+AGG - chr8.4:2181401-2181420 None:intergenic 35.0%
!!! ATTTTGCTTGGTTGATGATG+TGG + chr8.4:2182540-2182559 MS.gene035576:intron 35.0%
AACACAGCTGATTAGACCTT+TGG - chr8.4:2183221-2183240 None:intergenic 40.0%
AAGGTGGCAAAACTAAGTGT+TGG + chr8.4:2184072-2184091 MS.gene035576:CDS 40.0%
AATTAGCACTTCTGGTGCAA+AGG + chr8.4:2183554-2183573 MS.gene035576:intron 40.0%
ACACAGCTGATTAGACCTTT+GGG - chr8.4:2183220-2183239 None:intergenic 40.0%
ACCTGAAAGGGAAAATGATC+TGG - chr8.4:2185011-2185030 None:intergenic 40.0%
AGAGAGAAGGGAATCTCATT+TGG + chr8.4:2184211-2184230 MS.gene035576:CDS 40.0%
AGCAAAAGATGCAGTTACAG+AGG + chr8.4:2182034-2182053 MS.gene035576:CDS 40.0%
AGCCAATTTCATTGAAGGCT+TGG + chr8.4:2184143-2184162 MS.gene035576:CDS 40.0%
AGGCATGATTCCGTTACAAA+TGG + chr8.4:2183424-2183443 MS.gene035576:CDS 40.0%
AGTTGCTAGCATTACAATGG+TGG - chr8.4:2184341-2184360 None:intergenic 40.0%
ATCCAGGAGTGAACTGTATA+AGG + chr8.4:2183281-2183300 MS.gene035576:CDS 40.0%
ATGGCTAAGATCACTCCTAA+TGG - chr8.4:2182596-2182615 None:intergenic 40.0%
CAAATATTGCCTCACTTCCA+AGG + chr8.4:2182270-2182289 MS.gene035576:CDS 40.0%
CAAGTGTTTGTGAGAGCTAA+TGG - chr8.4:2182971-2182990 None:intergenic 40.0%
CACCAAGCCTTCAATGAAAT+TGG - chr8.4:2184148-2184167 None:intergenic 40.0%
CATGGTTCATTGCTTTCACT+TGG + chr8.4:2183186-2183205 MS.gene035576:CDS 40.0%
CATGTCTCAATTAGCACTTC+TGG + chr8.4:2183546-2183565 MS.gene035576:intron 40.0%
CCTCCCAATTCCATTTGTAA+CGG - chr8.4:2183437-2183456 None:intergenic 40.0%
CCTGAGATACATGCATTCAA+GGG + chr8.4:2182419-2182438 MS.gene035576:intron 40.0%
CGGCATTGCAATTTCAAAGA+AGG + chr8.4:2183400-2183419 MS.gene035576:CDS 40.0%
CGGCGAGAAATGAAGTTATA+AGG + chr8.4:2181708-2181727 MS.gene035576:intron 40.0%
CTCCCAAGAGGAAGTTAATA+AGG + chr8.4:2181866-2181885 MS.gene035576:CDS 40.0%
CTTGGAAGTGAGGCAATATT+TGG - chr8.4:2182272-2182291 None:intergenic 40.0%
GAAGAAGGAGTAAGGATTCT+TGG + chr8.4:2182199-2182218 MS.gene035576:CDS 40.0%
GAATGGAAGAAATCTACCTC+TGG + chr8.4:2180887-2180906 MS.gene035576:CDS 40.0%
GCCAAGAATACAAGAGAGAA+GGG + chr8.4:2184199-2184218 MS.gene035576:CDS 40.0%
GCTGATGATTCTGATACAAC+TGG - chr8.4:2184126-2184145 None:intergenic 40.0%
GGAATCAGTTGCTGATAGTT+TGG + chr8.4:2184032-2184051 MS.gene035576:CDS 40.0%
GGTTGTAAGATCTGGTGATT+TGG + chr8.4:2182162-2182181 MS.gene035576:intron 40.0%
GTTTCTTACTGTGCTGAAGA+AGG + chr8.4:2182184-2182203 MS.gene035576:CDS 40.0%
TACTGCTGTTAAGGTTGTCT+TGG + chr8.4:2184005-2184024 MS.gene035576:CDS 40.0%
TCCCTTCTCTCTTGTATTCT+TGG - chr8.4:2184203-2184222 None:intergenic 40.0%
TCCTGAGATACATGCATTCA+AGG + chr8.4:2182418-2182437 MS.gene035576:intron 40.0%
TGAAATAGACCTTGGAAGTG+AGG - chr8.4:2182282-2182301 None:intergenic 40.0%
TGAAGATGCTGACCTTGATT+TGG + chr8.4:2183478-2183497 MS.gene035576:CDS 40.0%
TGACAGGGTATAAAAGACAG+TGG + chr8.4:2185248-2185267 MS.gene035576:intron 40.0%
TGATGTGAGATCTACATAGG+GGG + chr8.4:2181547-2181566 MS.gene035576:intron 40.0%
TGCATGGAGATCATTGTTAG+AGG - chr8.4:2181841-2181860 None:intergenic 40.0%
TGCCAAGAATACAAGAGAGA+AGG + chr8.4:2184198-2184217 MS.gene035576:CDS 40.0%
TGGATAGTTAAAAGGCGGAA+TGG - chr8.4:2182615-2182634 None:intergenic 40.0%
TGGCTAAGATCACTCCTAAT+GGG - chr8.4:2182595-2182614 None:intergenic 40.0%
TGTTTGCAGCAACCAAATCA+AGG - chr8.4:2183493-2183512 None:intergenic 40.0%
! GACCAGTTTTGCCTGTAATT+AGG + chr8.4:2184292-2184311 MS.gene035576:CDS 40.0%
! TCTCATTTGGCCTTTGCTAT+TGG + chr8.4:2184224-2184243 MS.gene035576:CDS 40.0%
! TCTGTAACTGCATCTTTTGC+TGG - chr8.4:2182035-2182054 None:intergenic 40.0%
! TTGCAGCTTTGTGTTCTTTG+AGG - chr8.4:2181980-2181999 None:intergenic 40.0%
! TTTGAGACAGCAAGATTGAC+TGG - chr8.4:2182635-2182654 None:intergenic 40.0%
!! CAAGGTAGAAACTCTAGAGT+TGG - chr8.4:2181450-2181469 None:intergenic 40.0%
!! TGGACTTGCTACACCTAAAA+AGG + chr8.4:2181053-2181072 MS.gene035576:intron 40.0%
!!! GATAGCAACACTTTTTCCAG+AGG - chr8.4:2180906-2180925 None:intergenic 40.0%
ACAGGCAAAACTGGTCCAAA+TGG - chr8.4:2184288-2184307 None:intergenic 45.0%
ACTGTGCTGAAGAAGGAGTA+AGG + chr8.4:2182191-2182210 MS.gene035576:CDS 45.0%
AGACAGTGGAATTGGATCAC+AGG + chr8.4:2185262-2185281 MS.gene035576:CDS 45.0%
AGACATGAGAATTGCATGGG+AGG + chr8.4:2184260-2184279 MS.gene035576:CDS 45.0%
AGCATCGTACAGCCATTAGA+AGG - chr8.4:2183137-2183156 None:intergenic 45.0%
AGGAGTAAGGATTCTTGGAG+AGG + chr8.4:2182204-2182223 MS.gene035576:CDS 45.0%
AGGGCTTGGCAAGTTTATCA+CGG - chr8.4:2185330-2185349 None:intergenic 45.0%
AGTGAAGCTATCGGATAGCA+AGG - chr8.4:2183369-2183388 None:intergenic 45.0%
ATATCACAGTCATCCTCAGG+TGG - chr8.4:2184099-2184118 None:intergenic 45.0%
ATCTCCACCAGTGAAGCTAT+CGG - chr8.4:2183378-2183397 None:intergenic 45.0%
CACCTTATACAGTTCACTCC+TGG - chr8.4:2183286-2183305 None:intergenic 45.0%
CCAAGCCCTTCTTATACCAT+GGG + chr8.4:2185341-2185360 MS.gene035576:CDS 45.0%
CCCTTGAATGCATGTATCTC+AGG - chr8.4:2182422-2182441 None:intergenic 45.0%
CCGTTACAAATGGAATTGGG+AGG + chr8.4:2183434-2183453 MS.gene035576:CDS 45.0%
CTCGCCGAAAAGAGCAATTA+GGG - chr8.4:2181695-2181714 None:intergenic 45.0%
CTGTACGATGCTGCATTTCA+GGG + chr8.4:2183145-2183164 MS.gene035576:intron 45.0%
GAAACAGGGCCATAAGAAAG+TGG - chr8.4:2182781-2182800 None:intergenic 45.0%
GAATTTCCAGCAATGAGTGC+AGG - chr8.4:2182665-2182684 None:intergenic 45.0%
GACAGTGGAATTGGATCACA+GGG + chr8.4:2185263-2185282 MS.gene035576:CDS 45.0%
GACTTCCTTACAATGCATCC+AGG + chr8.4:2183265-2183284 MS.gene035576:CDS 45.0%
GCAAGGTTACAAGTCAGGAT+AGG - chr8.4:2183352-2183371 None:intergenic 45.0%
GCCAGACATGAGAATTGCAT+GGG + chr8.4:2184257-2184276 MS.gene035576:CDS 45.0%
GCGTATGATGTAATTGGCTG+AGG - chr8.4:2183857-2183876 None:intergenic 45.0%
GGAGGAGTGAATTTGCAGAT+TGG + chr8.4:2181211-2181230 MS.gene035576:intron 45.0%
GGAGTAAGGATTCTTGGAGA+GGG + chr8.4:2182205-2182224 MS.gene035576:CDS 45.0%
GGATAGCAAGGTTACAAGTC+AGG - chr8.4:2183357-2183376 None:intergenic 45.0%
GGTCTAATCAGCTGTGTTAC+TGG + chr8.4:2183223-2183242 MS.gene035576:CDS 45.0%
GGTTGAGAAAGTGAAGGCTA+AGG + chr8.4:2184053-2184072 MS.gene035576:CDS 45.0%
GTCACGTAGGATTCACTTGT+AGG - chr8.4:2181388-2181407 None:intergenic 45.0%
GTGATATCACAGTCATCCTC+AGG - chr8.4:2184102-2184121 None:intergenic 45.0%
GTTCATTGCTTTCACTTGGC+TGG + chr8.4:2183190-2183209 MS.gene035576:CDS 45.0%
TCACTCCTGGATGCATTGTA+AGG - chr8.4:2183273-2183292 None:intergenic 45.0%
TCAGGGATGTGTGTTCACAA+AGG + chr8.4:2184908-2184927 MS.gene035576:intron 45.0%
TCCCATGCAATTCTCATGTC+TGG - chr8.4:2184261-2184280 None:intergenic 45.0%
TCTCGCCGAAAAGAGCAATT+AGG - chr8.4:2181696-2181715 None:intergenic 45.0%
TCTTGGAGAGGGAAAGTTCT+TGG + chr8.4:2182216-2182235 MS.gene035576:CDS 45.0%
TGAGAAAGTGAAGGCTAAGG+TGG + chr8.4:2184056-2184075 MS.gene035576:CDS 45.0%
TGCTAGCAACTTTGGACTTC+AGG + chr8.4:2184350-2184369 MS.gene035576:CDS 45.0%
TTGCTATCCGATAGCTTCAC+TGG + chr8.4:2183368-2183387 MS.gene035576:intron 45.0%
TTTATGAGGTAGGGCCTGTT+TGG - chr8.4:2183029-2183048 None:intergenic 45.0%
! AAAGACCCCACTTTGGAAGA+GGG + chr8.4:2181926-2181945 MS.gene035576:CDS 45.0%
! ATCAGCTGTGTTACTGGCAA+AGG + chr8.4:2183229-2183248 MS.gene035576:CDS 45.0%
! GCCAGATCATTTTCCCTTTC+AGG + chr8.4:2185007-2185026 MS.gene035576:CDS 45.0%
! GTGCTTGCCGAGATTTTAGA+CGG + chr8.4:2180836-2180855 MS.gene035576:CDS 45.0%
! TCAGAGGTGTACTGCTGTTA+AGG + chr8.4:2183996-2184015 MS.gene035576:CDS 45.0%
! TTCATGGATTGTAGTGGCAC+CGG - chr8.4:2183625-2183644 None:intergenic 45.0%
AGCACTTCTGGTGCAAAGGA+AGG + chr8.4:2183558-2183577 MS.gene035576:intron 50.0%
AGCTGTTGCAGCTCTTCACA+TGG + chr8.4:2183168-2183187 MS.gene035576:CDS 50.0%
AGCTTCACTGGTGGAGATAC+CGG + chr8.4:2183380-2183399 MS.gene035576:intron 50.0%
AGTTCAGCCCTCTTCCAAAG+TGG - chr8.4:2181936-2181955 None:intergenic 50.0%
ATAAATTCTGCCCCAGCTCG+TGG + chr8.4:2184984-2185003 MS.gene035576:CDS 50.0%
ATTGCATGGGAGGAGCCATT+TGG + chr8.4:2184270-2184289 MS.gene035576:CDS 50.0%
ATTGCTCCTGCACTCATTGC+TGG + chr8.4:2182656-2182675 MS.gene035576:CDS 50.0%
CACTTCTGGTGCAAAGGAAG+GGG + chr8.4:2183560-2183579 MS.gene035576:intron 50.0%
CCCATGGTATAAGAAGGGCT+TGG - chr8.4:2185344-2185363 None:intergenic 50.0%
CTATCCGATAGCTTCACTGG+TGG + chr8.4:2183371-2183390 MS.gene035576:intron 50.0%
GAGGGCTGAACTTCTTCACA+AGG + chr8.4:2181944-2181963 MS.gene035576:CDS 50.0%
GCACTTCTGGTGCAAAGGAA+GGG + chr8.4:2183559-2183578 MS.gene035576:intron 50.0%
GCCAAGCCCTTCTTATACCA+TGG + chr8.4:2185340-2185359 MS.gene035576:CDS 50.0%
GCTGTACGATGCTGCATTTC+AGG + chr8.4:2183144-2183163 MS.gene035576:intron 50.0%
GGCCAGACATGAGAATTGCA+TGG + chr8.4:2184256-2184275 MS.gene035576:CDS 50.0%
GTTCAGCCCTCTTCCAAAGT+GGG - chr8.4:2181935-2181954 None:intergenic 50.0%
TAAATTCTGCCCCAGCTCGT+GGG + chr8.4:2184985-2185004 MS.gene035576:CDS 50.0%
TTCAGCCCTCTTCCAAAGTG+GGG - chr8.4:2181934-2181953 None:intergenic 50.0%
! CAAAGACCCCACTTTGGAAG+AGG + chr8.4:2181925-2181944 MS.gene035576:CDS 50.0%
! CTGTGTTACTGGCAAAGGCT+CGG + chr8.4:2183234-2183253 MS.gene035576:CDS 50.0%
!! ACTAAGTGTTGGACCACCTG+AGG + chr8.4:2184083-2184102 MS.gene035576:CDS 50.0%
!!! CACTTGGCTGGTTTTCCCAA+AGG + chr8.4:2183202-2183221 MS.gene035576:CDS 50.0%
AAATGATCTGGCCCACGAGC+TGG - chr8.4:2184999-2185018 None:intergenic 55.0%
AATGATCTGGCCCACGAGCT+GGG - chr8.4:2184998-2185017 None:intergenic 55.0%
ACGCTAGCTCACCGTGATTC+TGG - chr8.4:2185086-2185105 None:intergenic 55.0%
ACGGTCGATGGCCAGAATCA+CGG + chr8.4:2185072-2185091 MS.gene035576:intron 55.0%
ACTGGCAAAGGCTCGGAGAT+TGG + chr8.4:2183241-2183260 MS.gene035576:CDS 55.0%
CATGGGCAAAGACCCCACTT+TGG + chr8.4:2181919-2181938 MS.gene035576:CDS 55.0%
TGTGCTCAAGCCTCCAACTC+AGG + chr8.4:2182688-2182707 MS.gene035576:CDS 55.0%
ATGATCTGGCCCACGAGCTG+GGG - chr8.4:2184997-2185016 None:intergenic 60.0%
CCTCTTGGGAGCAAGCTGCA+TGG - chr8.4:2181857-2181876 None:intergenic 60.0%
CTGGTGCAAAGGAAGGGGCA+GGG + chr8.4:2183565-2183584 MS.gene035576:intron 60.0%
TCTGGTGCAAAGGAAGGGGC+AGG + chr8.4:2183564-2183583 MS.gene035576:intron 60.0%
! CCATGCAGCTTGCTCCCAAG+AGG + chr8.4:2181854-2181873 MS.gene035576:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 2180821 2185367 2180821 ID=MS.gene035576
chr8.4 mRNA 2180821 2185367 2180821 ID=MS.gene035576.t1;Parent=MS.gene035576
chr8.4 exon 2180821 2180965 2180821 ID=MS.gene035576.t1.exon1;Parent=MS.gene035576.t1
chr8.4 CDS 2180821 2180965 2180821 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2181862 2182055 2181862 ID=MS.gene035576.t1.exon2;Parent=MS.gene035576.t1
chr8.4 CDS 2181862 2182055 2181862 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2182163 2182291 2182163 ID=MS.gene035576.t1.exon3;Parent=MS.gene035576.t1
chr8.4 CDS 2182163 2182291 2182163 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2182590 2182709 2182590 ID=MS.gene035576.t1.exon4;Parent=MS.gene035576.t1
chr8.4 CDS 2182590 2182709 2182590 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2183166 2183302 2183166 ID=MS.gene035576.t1.exon5;Parent=MS.gene035576.t1
chr8.4 CDS 2183166 2183302 2183166 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2183382 2183537 2183382 ID=MS.gene035576.t1.exon6;Parent=MS.gene035576.t1
chr8.4 CDS 2183382 2183537 2183382 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2183993 2184371 2183993 ID=MS.gene035576.t1.exon7;Parent=MS.gene035576.t1
chr8.4 CDS 2183993 2184371 2183993 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2184912 2185028 2184912 ID=MS.gene035576.t1.exon8;Parent=MS.gene035576.t1
chr8.4 CDS 2184912 2185028 2184912 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
chr8.4 exon 2185254 2185367 2185254 ID=MS.gene035576.t1.exon9;Parent=MS.gene035576.t1
chr8.4 CDS 2185254 2185367 2185254 ID=cds.MS.gene035576.t1;Parent=MS.gene035576.t1
Gene Sequence

>MS.gene035576

ATGGCTGCTACTGGAGTGCTTGCCGAGATTTTAGACGGAGATGTATACAAATACTATGCTGATGGAGAATGGAAGAAATCTACCTCTGGAAAAAGTGTTGCTATCATCAACCCTACTACAAGAAAGCCTCAATACAAAGTTCAAGGTAATTTCCCTTTCTCTTTTGTTTTCAAGTCCTTTTATTTTAGTTACTTTGTATGATTCTTCATGTGGATGTGATCATGTGAGAATATGGACTTGCTACACCTAAAAAGGATGAACAAAAGCAACTATGTATGTTTACTGGATGCAAGACTTCAAAATTTTATAACAAGGATATATTCTGAAATTTCAACTTTTAATTTCACTGCTAGTAATTGTGAAAACACAGATACTGTTAAAAACGTTTAGGGAGGAGTGAATTTGCAGATTGGTCTTAGAAATTGTGAACAACGATCAAAATAATCTCTGAATTTTACGAATTGGCAAATACATCTCTGAAATAGTAACACATCAGTCAAAATGATCCATCCATTAACTTATGTTGTTAGAGGCTATAACTTGGTATGCTAAATGAACATGTAGCCTACAAGTGAATCCTACGTGACCAAAAACTTTTGTTGCCCGTTAAATTCATGTATTTAATGCCAACTCTAGAGTTTCTACCTTGAGATCCAAGCATGTTAAATAAATTTACCTCGGAATTTTCGTATGCAATTTAGTTGTAGTCTGTAGATAATGTATTATTGATGTGAGATCTACATAGGGGGCTATATATTCAATTAACAAATGAACCGTTTTGATGATTCTTTACAATTTTGAAGATAGATTTGCTGATTCAAAAAACTCAAGGACTATTTCGACCGATGCTTACAGTTTATACGACTAATTTCCCTAATTGCTCTTTTCGGCGAGAAATGAAGTTATAAGGAATGGAGATGACATTTGAACACTATGTCATTCTTTTAATAACAGTAAAAAGAAAATAGACTGATAGATAAATATAACAGAAAACAACTATGTTCAATAGGTTCTAAGCCTCTAACAATGATCTCCATGCAGCTTGCTCCCAAGAGGAAGTTAATAAGGTTATGGATTCAGCAAAATCAGCACAAAAGTCATGGGCAAAGACCCCACTTTGGAAGAGGGCTGAACTTCTTCACAAGGCAGCTGCAATCCTCAAAGAACACAAAGCTGCAATTGCAGAATGCCTAGTCAAAGAAATAGCAAAGCCAGCAAAAGATGCAGTTACAGAGGTGCATATTGTGTTACAGTGTTATGTTGAATAAGTTAAGTGTTGCTTAGGACTATAATATCGAGAAATTATGAAAATGATTGGAATTTTTTTATTTTTTCAATGAAGGTTGTAAGATCTGGTGATTTGGTTTCTTACTGTGCTGAAGAAGGAGTAAGGATTCTTGGAGAGGGAAAGTTCTTGGTTTCAGATAGTTTTCCGGGAAATGAAAGGACCAAATATTGCCTCACTTCCAAGGTCTATTTCACTACATATGCTACTTCTTAATATTCAATTCATATGTTACTATATACTTCAATCATTTTAGAAAAATCAATACGACAATGTACTTTATAAAGTCAATAAATTGGCGCGACACCAAAATCCTGAGATACATGCATTCAAGGGTGTAATATATCTGCATTGCATTCAATTATCTTAGTAACTTTTAATGACTTGTAAATTAAATGATCATGGTGAACTGTCATGTGTAATCTTATTGTTTTATTTTGCTTGGTTGATGATGTGGTCTAAGAAAGTTGCAATTGATTTTCAGATCCCATTAGGAGTGATCTTAGCCATTCCGCCTTTTAACTATCCAGTCAATCTTGCTGTCTCAAAAATTGCTCCTGCACTCATTGCTGGAAATTCTATTGTGCTCAAGCCTCCAACTCAGGTAATTTATATCCTTCATTGTGATACTCGTCAAAAACACTACATATGGGATCCATATTCTCATACTATCCACTTTCTTATGGCCCTGTTTCGATAAAAAGCTTAATTAAGAACTTATAGATTAAGCGCTTAACATATAAGTGTTTATGCATAAGTCATTTCTATAACAAATAAAATAAACTCAAACTATTTTCATATAGGCCATAAACTGTTTTCTTAATAAGCTGACAACAACTTATTGGCATGTCATAAGCGATTTCCATTAGCTCTCACAAACACTTGTGATTATAATTGTAAATAAGCTCAAATAAATCAATCCAAACAGGCCCTACCTCATAAAAGTTCTAGCTAATGTCTGAGCCGTTAAAAGAAACCAAAATAAAAAGTTTATGTCAGAATTTTTAAGTCTTATTTTCTTTACTGTTCCTTCTAATGGCTGTACGATGCTGCATTTCAGGGAGCTGTTGCAGCTCTTCACATGGTTCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGTCTAATCAGCTGTGTTACTGGCAAAGGCTCGGAGATTGGTGACTTCCTTACAATGCATCCAGGAGTGAACTGTATAAGGTGATTATATATCTATATGATGCTGTGATAGTATATGCTACTTTTACCTATCCTGACTTGTAACCTTGCTATCCGATAGCTTCACTGGTGGAGATACCGGCATTGCAATTTCAAAGAAGGCAGGCATGATTCCGTTACAAATGGAATTGGGAGGAAAAGATGCTTGCATTGTACTTGAAGATGCTGACCTTGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGGTGAATAACATGTCTCAATTAGCACTTCTGGTGCAAAGGAAGGGGCAGGGTTTGTCTTTCCATGCATTTACTTCATAAATATAACCGGTGCCACTACAATCCATGAATGTATTTAAATTGCAAACGCATCTCTATGTTTATCTTTTATTAGTAATTTTATAGACCAAACGACTAACGAAAGATACATTTGATGATCAAAATAACTAACAAAAGATACATTTGAGGACCAAACACTCTAAGAAAACTGACATCGCTTAACACATTCAAAGCCCAAAATGACCGTTTATTCATATAACTGCTAATACTAAGCTAGACACCTCAGCCAATTACATCATACGCTTCTTGATATGCATTATACAATATAAGATGAATGTTGCATGGTTAAAATTCTCATCTAGAAATTAAATGCATAGTCTCTTGATACTGAACTTTTTTTTTAATTTTTTCATGAAAAGTGGTCAGAGGTGTACTGCTGTTAAGGTTGTCTTGGTAATGGAATCAGTTGCTGATAGTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTAAGTGTTGGACCACCTGAGGATGACTGTGATATCACCCCAGTTGTATCAGAATCATCAGCCAATTTCATTGAAGGCTTGGTGAATGATGCTAAACAGAAAGGAGCAACATTCTGCCAAGAATACAAGAGAGAAGGGAATCTCATTTGGCCTTTGCTATTGGATAATGTTAGGCCAGACATGAGAATTGCATGGGAGGAGCCATTTGGACCAGTTTTGCCTGTAATTAGGATCAATTCTGTTGAAGAAGGTATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGTAAAATCTTCAACCCTCTCACTTCAACAATCAATTACTCTTAGAAAGAAATAGTATAATGCCTTCTAATACTAAAATGAGTTTAGTTTTGGTACATATTGAGTGTAAATTTTTTTATACTAGCAACAATAGAGCACAACCGATAGTATGTGTGACTTTAGAACAAATTTTGCTTTAAGCCAAACGTTTTTACTGTGTGTTTGATTATGGAGTGACAAAAATTGATTTTGATTAACACTAAGTTAAAAATAAAGTGTTTTATGTTTATCTTAGCTTCAACTTAGAATCGACTTTAGAGACAATCAATTCTACTGAAAAACATCCAAACATGTCAAAATCAGTTTTACACCTCTGAAATCATTTTTAACACCTCCGAAATTAGAACCAAACATTAATTTAATGATATGACGATTAAGGTTGACTGTGTAAAAAATCTTTGCATTTACCGTGTATGAATTAAATTCTAATAATTTATACTTGTGATGTGTTAGCATGCTAATAATAATTTGTATGAACAACATTGAACTTGAAATTGTTCAGGGATGTGTGTTCACAAAGGATATCAACAAAGCAATGATGATTAGTGATGCAATGGAATCAGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGGCCAGATCATTTTCCCTTTCAGGTGAAACTTATAAAATCAATCCATTTTGTGTATATTTGGTATTACGGTCGATGGCCAGAATCACGGTGAGCTAGCGTGTATTTGCAAAAGCTCTAATTATGGCAAAATCACCGTAACATCAAATATGCACATGTTATTTATTTGATACAATTTCCAAAATTACAAAAACAACAAAAAAAAAATTATATATATGTCTCATACTATCAAATGTTTTATCATTGACAGGGTATAAAAGACAGTGGAATTGGATCACAGGGAATTACCAACAGCATAAACATGATGACAAAAATCAAAACTACCGTGATAAACTTGCCAAGCCCTTCTTATACCATGGGCTAA
Protein sequence

>MS.gene035576.t1

MAATGVLAEILDGDVYKYYADGEWKKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLVEKVKAKVAKLSVGPPEDDCDITPVVSESSANFIEGLVNDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMMISDAMESGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG