AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33139

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33139.t1 MTR_1g014320 98.589 496 7 0 1 496 1 496 0.0 1008
MS.gene33139.t1 MTR_4g131180 90.323 496 48 0 1 496 1 496 0.0 939
MS.gene33139.t1 MTR_4g131180 89.978 459 46 0 1 459 1 459 0.0 867
MS.gene33139.t1 MTR_2g067660 32.272 471 298 7 22 482 53 512 2.41e-71 236
MS.gene33139.t1 MTR_8g064170 31.762 488 305 10 21 493 66 540 1.39e-60 208
MS.gene33139.t1 MTR_3g078490 33.761 468 285 9 19 469 41 500 2.55e-60 207
MS.gene33139.t1 MTR_3g078550 33.830 470 282 11 19 469 11 470 4.75e-59 203
MS.gene33139.t1 MTR_4g107040 29.817 493 308 10 21 493 69 543 7.16e-55 192
MS.gene33139.t1 MTR_8g083530 28.252 492 319 9 19 494 26 499 1.52e-54 191
MS.gene33139.t1 MTR_3g078170 29.918 488 314 11 21 493 67 541 3.11e-53 188
MS.gene33139.t1 MTR_4g106510 31.381 478 303 10 19 477 11 482 7.81e-53 186
MS.gene33139.t1 MTR_6g086300 28.889 495 312 11 19 494 25 498 1.69e-52 185
MS.gene33139.t1 MTR_6g086300 28.889 495 312 11 19 494 25 498 1.69e-52 185
MS.gene33139.t1 MTR_3g078550 33.710 442 264 11 47 469 9 440 4.22e-52 184
MS.gene33139.t1 MTR_6g086340 28.827 503 325 11 11 493 6 495 9.15e-52 183
MS.gene33139.t1 MTR_2g009750 29.583 480 313 11 22 487 20 488 3.39e-47 171
MS.gene33139.t1 MTR_2g009750 29.583 480 313 11 22 487 21 489 3.63e-47 171
MS.gene33139.t1 MTR_2g009750 29.522 481 313 11 22 487 21 490 5.72e-47 171
MS.gene33139.t1 MTR_8g083520 27.329 483 300 10 19 493 17 456 1.58e-46 168
MS.gene33139.t1 MTR_2g034160 28.513 491 313 13 19 485 52 528 1.42e-45 168
MS.gene33139.t1 MTR_8g064170 29.098 488 286 11 21 493 66 508 5.53e-45 165
MS.gene33139.t1 MTR_4g093170 28.211 475 319 9 22 483 48 513 4.33e-44 163
MS.gene33139.t1 MTR_3g078170 29.899 398 260 9 21 407 67 456 7.57e-40 150
MS.gene33139.t1 MTR_3g078490 34.421 337 202 7 19 343 11 340 2.73e-39 146
MS.gene33139.t1 MTR_8g083520 29.345 351 208 6 148 493 61 376 1.09e-38 145
MS.gene33139.t1 MTR_3g078170 31.230 317 203 6 21 330 67 375 3.33e-33 131
MS.gene33139.t1 MTR_3g078170 31.230 317 203 6 21 330 67 375 4.39e-33 130
MS.gene33139.t1 MTR_1399s0020 28.824 340 187 7 160 493 55 345 8.47e-33 128
MS.gene33139.t1 MTR_2g042330 24.431 483 339 14 19 487 25 495 1.67e-29 121
MS.gene33139.t1 MTR_8g083530 27.301 326 212 5 19 332 26 338 1.99e-29 119
MS.gene33139.t1 MTR_1690s0010 27.628 333 228 6 22 348 15 340 1.59e-28 116
MS.gene33139.t1 MTR_1222s0010 31.124 347 213 13 71 407 22 352 5.28e-28 118
MS.gene33139.t1 MTR_2g097950 28.615 325 208 10 158 467 120 435 3.35e-24 105
MS.gene33139.t1 MTR_3g088150 24.891 458 317 12 39 485 7 448 2.93e-23 103
MS.gene33139.t1 MTR_8g094600 25.408 429 285 13 53 467 74 481 8.30e-23 102
MS.gene33139.t1 MTR_1g029840 25.806 403 280 10 75 468 37 429 1.97e-21 97.4
MS.gene33139.t1 MTR_1g029840 24.711 433 301 10 45 468 13 429 2.04e-21 97.4
MS.gene33139.t1 MTR_8g076480 28.797 316 216 6 158 467 109 421 2.28e-21 97.4
MS.gene33139.t1 MTR_2g097950 26.019 319 189 9 158 467 120 400 3.29e-16 81.3
MS.gene33139.t1 MTR_1314s0010 27.083 336 204 11 158 468 1 320 1.98e-15 78.2
MS.gene33139.t1 MTR_4g065040 25.581 301 209 7 158 448 105 400 2.47e-12 69.3
MS.gene33139.t1 MTR_4g107940 25.836 329 209 13 22 329 57 371 1.83e-11 66.6
MS.gene33139.t1 MTR_4g107940 25.836 329 209 13 22 329 57 371 2.57e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33139.t1 AT2G24270 86.694 496 66 0 1 496 41 536 0.0 912
MS.gene33139.t1 AT2G24270 86.694 496 66 0 1 496 1 496 0.0 911
MS.gene33139.t1 AT2G24270 86.694 496 66 0 1 496 1 496 0.0 911
MS.gene33139.t1 AT2G24270 86.694 496 66 0 1 496 1 496 0.0 911
MS.gene33139.t1 AT1G74920 35.135 481 281 12 19 477 11 482 9.25e-69 228
MS.gene33139.t1 AT1G74920 34.927 481 277 13 19 477 11 477 1.93e-66 222
MS.gene33139.t1 AT1G79440 31.983 469 302 6 22 482 59 518 6.30e-66 222
MS.gene33139.t1 AT3G48170 31.667 480 299 11 19 477 11 482 5.11e-62 211
MS.gene33139.t1 AT3G48000 30.470 489 310 10 21 493 63 537 2.01e-58 202
MS.gene33139.t1 AT1G23800 30.435 483 316 9 22 493 60 533 3.73e-57 199
MS.gene33139.t1 AT3G24503 28.482 481 325 8 19 488 23 495 5.10e-53 187
MS.gene33139.t1 AT2G14170 28.931 477 313 11 22 483 11 476 6.40e-44 162
MS.gene33139.t1 AT3G66658 27.812 489 312 13 11 467 31 510 1.81e-43 162
MS.gene33139.t1 AT2G14170 29.114 474 312 10 22 482 120 582 3.53e-43 161
MS.gene33139.t1 AT3G66658 27.812 489 312 13 11 467 31 510 3.57e-43 161
MS.gene33139.t1 AT2G14170 28.931 477 313 11 22 483 120 585 6.77e-43 161
MS.gene33139.t1 AT1G23800 31.013 316 203 6 22 330 60 367 7.30e-34 132
MS.gene33139.t1 AT1G54100 24.096 498 351 13 5 487 9 494 2.72e-32 129
MS.gene33139.t1 AT1G54100 24.096 498 351 13 5 487 9 494 2.72e-32 129
MS.gene33139.t1 AT1G44170 27.044 318 221 8 158 468 49 362 4.61e-22 99.0
MS.gene33139.t1 AT1G44170 27.044 318 221 8 158 468 112 425 5.16e-22 99.4
MS.gene33139.t1 AT1G44170 27.044 318 221 8 158 468 112 425 5.16e-22 99.4
MS.gene33139.t1 AT4G34240 23.973 438 296 11 46 468 58 473 1.40e-19 92.0
MS.gene33139.t1 AT4G34240 23.973 438 296 11 46 468 73 488 1.56e-19 92.0
MS.gene33139.t1 AT4G34240 26.183 317 225 6 158 468 33 346 1.34e-18 88.2
MS.gene33139.t1 AT4G36250 26.935 323 216 10 158 467 108 423 9.34e-18 86.3
MS.gene33139.t1 AT5G62530 24.425 348 231 15 19 351 56 386 1.72e-12 70.1
MS.gene33139.t1 AT4G34240 26.415 265 166 9 71 322 92 340 1.35e-11 66.6

Find 127 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTAATGCAAGCAATTT+TGG 0.134284 1.3:-8453175 MS.gene33139:CDS
ATACCTGGGTTGGTGGTTTA+AGG 0.181685 1.3:+8454755 None:intergenic
TTCCTTCCCTTCTGTATTCT+TGG 0.223634 1.3:+8453317 None:intergenic
TCTCGGAGAAGGAAAGTTTC+TGG 0.263915 1.3:-8455015 MS.gene33139:CDS
TTTGAAACAGCTAGATTAAC+AGG 0.291774 1.3:+8454814 None:intergenic
ACGGAATTTATTCTGATAAC+AGG 0.316059 1.3:+8453214 None:intergenic
GGTTGTTAGATCAGGGGATT+TGG 0.337868 1.3:-8455069 MS.gene33139:CDS
GATTACTGTGGTCTTAATCT+TGG 0.346129 1.3:+8452092 None:intergenic
GGAAAATATTGCACCTGAAA+AGG 0.346437 1.3:+8452490 None:intergenic
TATATGTAGGTTGTTAGATC+AGG 0.348615 1.3:-8455077 MS.gene33139:intron
AGGAGGACCGACAGTTAGTT+TGG 0.359188 1.3:+8453438 None:intergenic
TATGGTACATTGCTTTCATT+TGG 0.367075 1.3:-8454465 MS.gene33139:CDS
TGAAGATGCTGACTTGGATT+TGG 0.367579 1.3:-8453758 MS.gene33139:CDS
TTGCAGGGTTTGAAGGATAG+TGG 0.372922 1.3:-8452156 MS.gene33139:intron
CACACAGCTTATAAGACCTT+TGG 0.374357 1.3:+8454433 None:intergenic
ACACAGCTTATAAGACCTTT+GGG 0.375552 1.3:+8454434 None:intergenic
GTACATTGCTTTCATTTGGC+TGG 0.376538 1.3:-8454461 MS.gene33139:CDS
CTAGTGGTTGGATTGATGAT+AGG 0.383748 1.3:+8456173 None:intergenic
ATTGCTCCAGCTCTTATTGC+TGG 0.384524 1.3:-8454790 MS.gene33139:CDS
GAGGAAGGAGTTAGAATTCT+CGG 0.389121 1.3:-8455032 MS.gene33139:CDS
AGATTAACAGGATAGTTAAA+AGG 0.392708 1.3:+8454826 None:intergenic
TATTTAGTTCTTTCATTGCC+TGG 0.403493 1.3:+8454978 None:intergenic
CTTTATTGAAGGGTTGGTAA+TGG 0.403798 1.3:-8453368 MS.gene33139:CDS
GCCAACACCTTCTTATACAA+TGG 0.407521 1.3:-8452064 MS.gene33139:CDS
GGTTTGAAGGATAGTGGAAT+TGG 0.422091 1.3:-8452150 MS.gene33139:CDS
TTAACAAGACACTCAGCAAT+AGG 0.426100 1.3:+8455598 None:intergenic
ATGTACCTTGGACCTTGAAA+TGG 0.428401 1.3:+8456144 None:intergenic
TATTGCTGAGTGTCTTGTTA+AGG 0.430949 1.3:-8455596 MS.gene33139:CDS
ACATTAATCCTTAGTTTCAC+TGG 0.432236 1.3:-8453868 MS.gene33139:intron
TGCAATGGTTCCTCTTCAAA+TGG 0.433244 1.3:-8453812 MS.gene33139:CDS
TGATTTGTTGCAGGGTTTGA+AGG 0.434669 1.3:-8452163 MS.gene33139:intron
TGCTAACTTTATTGAAGGGT+TGG 0.434842 1.3:-8453374 MS.gene33139:CDS
CCAACACCTTCTTATACAAT+GGG 0.438581 1.3:-8452063 MS.gene33139:CDS
ATATTTGCAGAGATTATAGA+TGG 0.438746 1.3:-8456257 MS.gene33139:CDS
GAAAATATTGCACCTGAAAA+GGG 0.439932 1.3:+8452491 None:intergenic
TCCTCTGCTAACTTTATTGA+AGG 0.440983 1.3:-8453379 MS.gene33139:CDS
TACCTTATGCAGTTCACCCC+TGG 0.448155 1.3:+8454368 None:intergenic
TGAAAGGAGGGTTCTCCTAC+AGG 0.449738 1.3:-8453720 MS.gene33139:intron
TGCTGTAGCTGCGCTACATA+TGG 0.450953 1.3:-8454483 MS.gene33139:CDS
GACTTTCTTACAATGCATCC+AGG 0.452616 1.3:-8454386 MS.gene33139:CDS
TACTTCAGTGACAGCATCCT+TGG 0.455558 1.3:+8455558 None:intergenic
ATAATGTTCGTTCCGATATG+AGG 0.461487 1.3:-8453270 MS.gene33139:CDS
GTTCCGATATGAGGATATCA+TGG 0.465033 1.3:-8453261 MS.gene33139:CDS
TGTTCTTGAAGATGCTGACT+TGG 0.468639 1.3:-8453764 MS.gene33139:CDS
ATAAGCTGTGTGACAGGAAA+GGG 0.469137 1.3:-8454422 MS.gene33139:CDS
TCAGTGACAGCATCCTTGGC+TGG 0.470757 1.3:+8455562 None:intergenic
ATTCTGATAACAGGCAAAAC+CGG 0.474825 1.3:+8453223 None:intergenic
CACTTCACTAAGAAAATGGC+AGG 0.475289 1.3:-8456287 None:intergenic
CATTTGGCTGGCTTCCCCAA+AGG 0.482485 1.3:-8454449 MS.gene33139:CDS
AGAATAAATTCCGTCGAAGA+AGG 0.485859 1.3:-8453205 MS.gene33139:CDS
ACCTGAAAAGGGAAGTGATC+AGG 0.486864 1.3:+8452502 None:intergenic
TTCCCATGATATCCTCATAT+CGG 0.487401 1.3:+8453258 None:intergenic
AAGTGGAACAAATCCTCCTC+TGG 0.487476 1.3:-8456206 MS.gene33139:CDS
ATATGTAGGTTGTTAGATCA+GGG 0.488532 1.3:-8455076 MS.gene33139:intron
TATGGGCTAAAACTCCACTT+TGG 0.488875 1.3:-8455675 MS.gene33139:CDS
GGTTGCTTTAGTCATGGAAT+CGG 0.489106 1.3:-8453500 MS.gene33139:CDS
ATCCAGGGGTGAACTGCATA+AGG 0.490005 1.3:-8454370 MS.gene33139:intron
ATATCATGGGAAGAACCATT+TGG 0.490103 1.3:-8453247 MS.gene33139:CDS
ACAGGCAAAACCGGTCCAAA+TGG 0.493625 1.3:+8453232 None:intergenic
AGTTTCACTGGTGGGGACAC+TGG 0.494684 1.3:-8453856 MS.gene33139:CDS
GGTCTTATAAGCTGTGTGAC+AGG 0.497203 1.3:-8454428 MS.gene33139:CDS
TCAAAGATGCACAGCAGTAA+AGG 0.504769 1.3:-8453521 MS.gene33139:CDS
ACAGGAAAGGGTTCTGAGAT+TGG 0.507660 1.3:-8454410 MS.gene33139:CDS
CCACCAAGCTCCATTTGAAG+AGG 0.508608 1.3:+8453802 None:intergenic
GTTCCTCTTCAAATGGAGCT+TGG 0.511297 1.3:-8453805 MS.gene33139:CDS
GTGATGTCGCAGTCATCCTC+AGG 0.511676 1.3:+8453418 None:intergenic
CAAGGCTGCAGCAATATTGA+AGG 0.514089 1.3:-8455632 MS.gene33139:CDS
ATAAGCGATGCAATGGAGAC+AGG 0.514767 1.3:-8452559 MS.gene33139:CDS
CCTCTTCAAATGGAGCTTGG+TGG 0.517151 1.3:-8453802 MS.gene33139:CDS
ACTACTATGCAGATGGGAAG+TGG 0.523545 1.3:-8456223 MS.gene33139:CDS
AAGTGATCAGGTCCGCGAGC+TGG 0.523854 1.3:+8452514 None:intergenic
AACAGCTTGTACACAGGAAG+AGG 0.524957 1.3:-8455737 MS.gene33139:intron
GGTCATCATGTTAATACTGT+TGG 0.527504 1.3:+8452113 None:intergenic
TAAATACTGTCTCACTTCAA+AGG 0.527755 1.3:-8454961 MS.gene33139:intron
AATCCTTAGTTTCACTGGTG+GGG 0.528272 1.3:-8453863 MS.gene33139:intron
AAAGAAAATCAAGGATAAAG+TGG 0.530683 1.3:-8453461 MS.gene33139:CDS
TGCCAAGAATACAGAAGGGA+AGG 0.531745 1.3:-8453319 MS.gene33139:CDS
ATGGGAAGAACCATTTGGAC+CGG 0.532169 1.3:-8453242 MS.gene33139:CDS
GTAATGGATGCTAAGAAGAA+AGG 0.533888 1.3:-8453352 MS.gene33139:CDS
CATACTTGTAAAGAAAATCA+AGG 0.535139 1.3:-8453470 MS.gene33139:CDS
GAAGGGAAGGAAATCTCATA+TGG 0.535932 1.3:-8453306 MS.gene33139:CDS
TAATCCTTAGTTTCACTGGT+GGG 0.536871 1.3:-8453864 MS.gene33139:intron
CCTCTGCTAACTTTATTGAA+GGG 0.538814 1.3:-8453378 MS.gene33139:CDS
ACTTTCTTACAATGCATCCA+GGG 0.540072 1.3:-8454385 MS.gene33139:CDS
TCTTATCCCATTGTATAAGA+AGG 0.542086 1.3:+8452057 None:intergenic
TAGTTGTATACCTGGGTTGG+TGG 0.543473 1.3:+8454748 None:intergenic
GAGTTTCCAGCAATAAGAGC+TGG 0.549640 1.3:+8454784 None:intergenic
CAAAATTGCTTGCATTACAA+TGG 0.559581 1.3:+8453176 None:intergenic
GTGTCATATTGTGCAGAGGA+AGG 0.561191 1.3:-8455047 MS.gene33139:CDS
CCCATTGTATAAGAAGGTGT+TGG 0.561818 1.3:+8452063 None:intergenic
TATAAGCTGTGTGACAGGAA+AGG 0.564453 1.3:-8454423 MS.gene33139:CDS
TAACAGGATAGTTAAAAGGC+GGG 0.565103 1.3:+8454830 None:intergenic
GATAGTGGAATTGGTTCTCA+AGG 0.566426 1.3:-8452141 MS.gene33139:CDS
GTAGCTGCTAACATTGTGAA+AGG 0.567909 1.3:-8453736 MS.gene33139:CDS
AAAATCCATTTCAAGGTCCA+AGG 0.568430 1.3:-8456149 MS.gene33139:intron
GGTTGGTGGTTTAAGGACAA+TGG 0.570050 1.3:+8454762 None:intergenic
CGAACATTATCCAACAAAAG+TGG 0.572392 1.3:+8453283 None:intergenic
GGAGTTAGAATTCTCGGAGA+AGG 0.577933 1.3:-8455026 MS.gene33139:CDS
TTGTGTGTGCAGATTCCACT+CGG 0.578498 1.3:-8454868 MS.gene33139:intron
AGTAAAGGTTGCTTTAGTCA+TGG 0.579116 1.3:-8453506 MS.gene33139:CDS
GCAGAGGATTCTGTGATGAC+CGG 0.579247 1.3:+8453394 None:intergenic
ATGGCGAATTCCTTCTTCGA+CGG 0.589654 1.3:+8453195 None:intergenic
CTGCTAACATTGTGAAAGGA+GGG 0.598823 1.3:-8453732 MS.gene33139:CDS
TTAATCCTTAGTTTCACTGG+TGG 0.600395 1.3:-8453865 MS.gene33139:intron
CCCTTCAATAAAGTTAGCAG+AGG 0.600576 1.3:+8453378 None:intergenic
GGAGATTGCAAAACCAGCCA+AGG 0.600790 1.3:-8455575 MS.gene33139:CDS
AATATCAAAGAAGTCTGCAA+TGG 0.609417 1.3:-8453827 MS.gene33139:CDS
GCTGCTAACATTGTGAAAGG+AGG 0.613573 1.3:-8453733 MS.gene33139:CDS
TGTCCTTAAACCACCAACCC+AGG 0.614373 1.3:-8454758 MS.gene33139:intron
TTCCGATATGAGGATATCAT+GGG 0.614684 1.3:-8453260 MS.gene33139:CDS
GAATAGTTGTATACCTGGGT+TGG 0.619472 1.3:+8454745 None:intergenic
TATGTAGGTTGTTAGATCAG+GGG 0.620747 1.3:-8455075 MS.gene33139:intron
AATGTTGATAAGCGATGCAA+TGG 0.626313 1.3:-8452566 MS.gene33139:CDS
AGGATAGTTAAAAGGCGGGA+TGG 0.627333 1.3:+8454834 None:intergenic
ATCAATTCAGCACCAGCTCG+CGG 0.632640 1.3:-8452526 MS.gene33139:CDS
AAGAGCAGAGTTGCTTCACA+AGG 0.641127 1.3:-8455650 MS.gene33139:CDS
TTAACAGGATAGTTAAAAGG+CGG 0.641435 1.3:+8454829 None:intergenic
ACTAACTGTCGGTCCTCCTG+AGG 0.641509 1.3:-8453434 MS.gene33139:CDS
TTTGGTGTCATATTGTGCAG+AGG 0.648388 1.3:-8455051 MS.gene33139:CDS
CTTTCTTACAATGCATCCAG+GGG 0.660682 1.3:-8454384 MS.gene33139:CDS
AAAGTGGCCAAACTAACTGT+CGG 0.661745 1.3:-8453445 MS.gene33139:CDS
CACAGCTTATAAGACCTTTG+GGG 0.662828 1.3:+8454435 None:intergenic
ATGTCGCAGTCATCCTCAGG+AGG 0.676524 1.3:+8453421 None:intergenic
ATGGCTAAAACAACTCCGAG+TGG 0.678221 1.3:+8454853 None:intergenic
ACTTCACTAAGAAAATGGCA+GGG 0.694519 1.3:-8456286 None:intergenic
GGATGACTGCGACATCACAC+CGG 0.698931 1.3:-8453413 MS.gene33139:CDS
TGTTGGCAAGTTGATTACTG+TGG 0.718041 1.3:+8452080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG + chr1.3:8455449-8455468 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1.3:8455450-8455469 None:intergenic 10.0%
!! TAAGGAATATATATATAATT+AGG + chr1.3:8455915-8455934 None:intergenic 10.0%
!! TTCAAAAATAATATATATCA+TGG - chr1.3:8452491-8452510 MS.gene33139:intron 10.0%
!!! TAAAATCATATTTTTTGTTT+TGG + chr1.3:8455593-8455612 None:intergenic 10.0%
!!! TTAACTTTTCATTTATTTAA+TGG - chr1.3:8452808-8452827 MS.gene33139:intron 10.0%
!!! TTACAATTTTTTTTACTATT+TGG - chr1.3:8452542-8452561 MS.gene33139:CDS 10.0%
!! AAAATGGAATATATTGAATT+GGG + chr1.3:8455425-8455444 None:intergenic 15.0%
!! AATCTAACTAATCTAATTAA+TGG - chr1.3:8453720-8453739 MS.gene33139:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr1.3:8455384-8455403 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1.3:8455448-8455467 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr1.3:8455385-8455404 None:intergenic 15.0%
!! TATAGTTATTATGATGTATA+TGG + chr1.3:8453617-8453636 None:intergenic 15.0%
!!! AATTTATAATTTGTTGTGTT+CGG - chr1.3:8452896-8452915 MS.gene33139:intron 15.0%
!!! ATATTGCTGATTTTTTTTAA+AGG - chr1.3:8452517-8452536 MS.gene33139:CDS 15.0%
!!! ATTGAAAGTAAATTTTGATT+GGG + chr1.3:8452244-8452263 None:intergenic 15.0%
!! AAAAGTTGCTCAAAAATTAT+GGG - chr1.3:8452639-8452658 MS.gene33139:intron 20.0%
!! GAAAATGGAATATATTGAAT+TGG + chr1.3:8455426-8455445 None:intergenic 20.0%
!! TAAAAAATTTCTTACTAGAG+AGG - chr1.3:8454401-8454420 MS.gene33139:CDS 20.0%
!! TAATAAAACCAAAACAAAAG+TGG + chr1.3:8454026-8454045 None:intergenic 20.0%
!! TAATATGTAACAATTGCATT+CGG + chr1.3:8453747-8453766 None:intergenic 20.0%
!! TACCAAATGTATTATGAATA+GGG - chr1.3:8453825-8453844 MS.gene33139:CDS 20.0%
!! TAGGAAGAAAAAAAATTCAA+AGG - chr1.3:8455944-8455963 MS.gene33139:intron 20.0%
!! TTTCATATCTATTCTTAACA+AGG + chr1.3:8456072-8456091 None:intergenic 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr1.3:8455315-8455334 None:intergenic 20.0%
!!! GATTGAAAGTAAATTTTGAT+TGG + chr1.3:8452245-8452264 None:intergenic 20.0%
! AAAGAAAATCAAGGATAAAG+TGG - chr1.3:8454870-8454889 MS.gene33139:intron 25.0%
! AATATGTTCATAAATCTGCA+TGG + chr1.3:8456095-8456114 None:intergenic 25.0%
! AGATTAACAGGATAGTTAAA+AGG + chr1.3:8453508-8453527 None:intergenic 25.0%
! ATATAATATGTCATGTACCT+TGG + chr1.3:8452202-8452221 None:intergenic 25.0%
! ATATTTGCAGAGATTATAGA+TGG - chr1.3:8452074-8452093 MS.gene33139:CDS 25.0%
! CAAAAGTTGCTCAAAAATTA+TGG - chr1.3:8452638-8452657 MS.gene33139:intron 25.0%
! CATACTTGTAAAGAAAATCA+AGG - chr1.3:8454861-8454880 MS.gene33139:intron 25.0%
! GTACCAAATGTATTATGAAT+AGG - chr1.3:8453824-8453843 MS.gene33139:CDS 25.0%
! GTTATGAAATCAAGAAAATG+TGG + chr1.3:8454722-8454741 None:intergenic 25.0%
! TAAGGTAATATTCACTTCTT+CGG - chr1.3:8453979-8453998 MS.gene33139:intron 25.0%
! TACCATCATTATTATCTACT+CGG - chr1.3:8454654-8454673 MS.gene33139:intron 25.0%
! TAGACTTATTGATCAAATAG+TGG + chr1.3:8452337-8452356 None:intergenic 25.0%
! TGTATAAATAAAGGGGAAAA+TGG + chr1.3:8455441-8455460 None:intergenic 25.0%
! TTTCAATATTCTTGATGTTG+CGG - chr1.3:8453029-8453048 MS.gene33139:intron 25.0%
!! AACATGATATCAATTAGTCT+TGG + chr1.3:8452427-8452446 None:intergenic 25.0%
!! AACGGCATTAATATTTTTCA+GGG - chr1.3:8455667-8455686 MS.gene33139:CDS 25.0%
!! ATATTCCTTAAGTTGTTCTT+AGG - chr1.3:8455925-8455944 MS.gene33139:intron 25.0%
!! ATTTTCTTTTGATATGTCAG+TGG - chr1.3:8454787-8454806 MS.gene33139:CDS 25.0%
!! CATCAATATTTTGTATTCGA+TGG - chr1.3:8452972-8452991 MS.gene33139:intron 25.0%
!! GTCTTTTGTTAGCAATTTTA+CGG - chr1.3:8454149-8454168 MS.gene33139:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr1.3:8455338-8455357 None:intergenic 25.0%
!! TTTTGTAAGTTTGATACACT+CGG - chr1.3:8454241-8454260 MS.gene33139:intron 25.0%
!!! ATTATTGTCCACTTTTGTTT+TGG - chr1.3:8454015-8454034 MS.gene33139:intron 25.0%
!!! ATTTTATTTTGCATGACACA+GGG - chr1.3:8455712-8455731 MS.gene33139:CDS 25.0%
!!! ATTTTTTGTTTTGGAGAGAA+TGG + chr1.3:8455584-8455603 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr1.3:8455316-8455335 None:intergenic 25.0%
!!! TATTTTATTTTGCATGACAC+AGG - chr1.3:8455711-8455730 MS.gene33139:CDS 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr1.3:8455337-8455356 None:intergenic 25.0%
!!! TTCGAAGGTATGAAATTTTA+TGG + chr1.3:8455885-8455904 None:intergenic 25.0%
AAAACAATTAGCACCATCAT+AGG - chr1.3:8455235-8455254 MS.gene33139:intron 30.0%
AATATCAAAGAAGTCTGCAA+TGG - chr1.3:8454504-8454523 MS.gene33139:intron 30.0%
ACATTAATCCTTAGTTTCAC+TGG - chr1.3:8454463-8454482 MS.gene33139:CDS 30.0%
ACCAACAAAAGACAAATATG+AGG - chr1.3:8454213-8454232 MS.gene33139:intron 30.0%
ACCATCATTATTATCTACTC+GGG - chr1.3:8454655-8454674 MS.gene33139:intron 30.0%
ACGGAATTTATTCTGATAAC+AGG + chr1.3:8455120-8455139 None:intergenic 30.0%
ATAACTATGTAAGAACAGAC+AGG + chr1.3:8453406-8453425 None:intergenic 30.0%
ATATGTAGGTTGTTAGATCA+GGG - chr1.3:8453255-8453274 MS.gene33139:CDS 30.0%
CAAAATTGCTTGCATTACAA+TGG + chr1.3:8455158-8455177 None:intergenic 30.0%
CACCCTATTCATAATACATT+TGG + chr1.3:8453830-8453849 None:intergenic 30.0%
CACTAGAAAAATCCATTTCA+AGG - chr1.3:8452175-8452194 MS.gene33139:intron 30.0%
CCAAATCTAAGAAACAATAG+AGG + chr1.3:8453159-8453178 None:intergenic 30.0%
CTATGAATAGTTGTATACCT+GGG + chr1.3:8453593-8453612 None:intergenic 30.0%
GAAAATATTGCACCTGAAAA+GGG + chr1.3:8455843-8455862 None:intergenic 30.0%
GTAGCTGCAATTTAATATCT+TGG + chr1.3:8456020-8456039 None:intergenic 30.0%
TAAATACTGTCTCACTTCAA+AGG - chr1.3:8453370-8453389 MS.gene33139:CDS 30.0%
TAAATATGTTCACGACGTAA+AGG + chr1.3:8453113-8453132 None:intergenic 30.0%
TAATTAGGATTGAAGTTCGA+AGG + chr1.3:8455900-8455919 None:intergenic 30.0%
TATATGTAGGTTGTTAGATC+AGG - chr1.3:8453254-8453273 MS.gene33139:CDS 30.0%
TATGGTACATTGCTTTCATT+TGG - chr1.3:8453866-8453885 MS.gene33139:intron 30.0%
TCTATGAATAGTTGTATACC+TGG + chr1.3:8453594-8453613 None:intergenic 30.0%
TGTGTGAGTTATTGATCTAA+TGG - chr1.3:8452378-8452397 MS.gene33139:intron 30.0%
TTAACAGGATAGTTAAAAGG+CGG + chr1.3:8453505-8453524 None:intergenic 30.0%
TTCTTCCTAAGAACAACTTA+AGG + chr1.3:8455933-8455952 None:intergenic 30.0%
TTGATCAATAAGTCTAACCA+TGG - chr1.3:8452341-8452360 MS.gene33139:intron 30.0%
TTTGTAAGTTTGATACACTC+GGG - chr1.3:8454242-8454261 MS.gene33139:intron 30.0%
! ACCTCATATTTGTCTTTTGT+TGG + chr1.3:8454217-8454236 None:intergenic 30.0%
! ATTTTGCCAAGAATACAGAA+GGG - chr1.3:8455008-8455027 MS.gene33139:CDS 30.0%
! CATTGTAATGCAAGCAATTT+TGG - chr1.3:8455156-8455175 MS.gene33139:intron 30.0%
! CCTCTATTGTTTCTTAGATT+TGG - chr1.3:8453156-8453175 MS.gene33139:intron 30.0%
! GAACGGCATTAATATTTTTC+AGG - chr1.3:8455666-8455685 MS.gene33139:CDS 30.0%
! GCTACGACTTTTATATATGT+AGG - chr1.3:8453241-8453260 MS.gene33139:CDS 30.0%
! TTCAGAGTAAACCATCATTT+TGG - chr1.3:8454054-8454073 MS.gene33139:intron 30.0%
! TTTGAAACAGCTAGATTAAC+AGG + chr1.3:8453520-8453539 None:intergenic 30.0%
! TTTTCAACTACTATGCAGAT+GGG - chr1.3:8452102-8452121 MS.gene33139:CDS 30.0%
!! AAATGGATTTTTCTAGTGGT+TGG + chr1.3:8452173-8452192 None:intergenic 30.0%
!! ACAATATCACTTTTGATCCA+TGG + chr1.3:8452361-8452380 None:intergenic 30.0%
!! CTTGAAATGGATTTTTCTAG+TGG + chr1.3:8452177-8452196 None:intergenic 30.0%
!! TATTTAGTTCTTTCATTGCC+TGG + chr1.3:8453356-8453375 None:intergenic 30.0%
!!! AAGTAAATTTTGATTGGGTG+AGG + chr1.3:8452239-8452258 None:intergenic 30.0%
!!! AGTAAATTTTGATTGGGTGA+GGG + chr1.3:8452238-8452257 None:intergenic 30.0%
!!! TGCACAAGGTTTTGAAATTT+CGG - chr1.3:8453003-8453022 MS.gene33139:intron 30.0%
!!! TGTACAAGCTGTTTTTCATT+TGG + chr1.3:8452587-8452606 None:intergenic 30.0%
!!! TTTTATTTTGCATGACACAG+GGG - chr1.3:8455713-8455732 MS.gene33139:CDS 30.0%
AAAATCCATTTCAAGGTCCA+AGG - chr1.3:8452182-8452201 MS.gene33139:intron 35.0%
ACACAGCTTATAAGACCTTT+GGG + chr1.3:8453900-8453919 None:intergenic 35.0%
ACCCGAGTAGATAATAATGA+TGG + chr1.3:8454659-8454678 None:intergenic 35.0%
ACTTTCTTACAATGCATCCA+GGG - chr1.3:8453946-8453965 MS.gene33139:intron 35.0%
AGAATAAATTCCGTCGAAGA+AGG - chr1.3:8455126-8455145 MS.gene33139:intron 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr1.3:8455302-8455321 None:intergenic 35.0%
ATAATGTTCGTTCCGATATG+AGG - chr1.3:8455061-8455080 MS.gene33139:CDS 35.0%
ATACTTTGGCAGTTTAGACA+TGG + chr1.3:8456149-8456168 None:intergenic 35.0%
ATATCATGGGAAGAACCATT+TGG - chr1.3:8455084-8455103 MS.gene33139:intron 35.0%
ATGAAAAACAGCTTGTACAC+AGG - chr1.3:8452588-8452607 MS.gene33139:CDS 35.0%
ATTCTGATAACAGGCAAAAC+CGG + chr1.3:8455111-8455130 None:intergenic 35.0%
CCAACACCTTCTTATACAAT+GGG - chr1.3:8456268-8456287 MS.gene33139:CDS 35.0%
CCTCTGCTAACTTTATTGAA+GGG - chr1.3:8454953-8454972 MS.gene33139:intron 35.0%
CGAACATTATCCAACAAAAG+TGG + chr1.3:8455051-8455070 None:intergenic 35.0%
CGTGAACATATTTACAGTTG+CGG - chr1.3:8453119-8453138 MS.gene33139:intron 35.0%
CTTGATGTTGCGGAAAATTA+TGG - chr1.3:8453039-8453058 MS.gene33139:intron 35.0%
GCTGCAATTTAATATCTTGG+TGG + chr1.3:8456017-8456036 None:intergenic 35.0%
GGAAAATATTGCACCTGAAA+AGG + chr1.3:8455844-8455863 None:intergenic 35.0%
GGTCATCATGTTAATACTGT+TGG + chr1.3:8456221-8456240 None:intergenic 35.0%
TAACAGGATAGTTAAAAGGC+GGG + chr1.3:8453504-8453523 None:intergenic 35.0%
TAATCCTTAGTTTCACTGGT+GGG - chr1.3:8454467-8454486 MS.gene33139:CDS 35.0%
TAGTTACAACTTCCAACAAG+AGG - chr1.3:8454313-8454332 MS.gene33139:intron 35.0%
TATGTAGGTTGTTAGATCAG+GGG - chr1.3:8453256-8453275 MS.gene33139:CDS 35.0%
TCACTTGTGCATCATAGAAT+TGG + chr1.3:8452283-8452302 None:intergenic 35.0%
TCCTCTGCTAACTTTATTGA+AGG - chr1.3:8454952-8454971 MS.gene33139:intron 35.0%
TGCTAACTTTATTGAAGGGT+TGG - chr1.3:8454957-8454976 MS.gene33139:intron 35.0%
TTAACAAGACACTCAGCAAT+AGG + chr1.3:8452736-8452755 None:intergenic 35.0%
TTAATCCTTAGTTTCACTGG+TGG - chr1.3:8454466-8454485 MS.gene33139:CDS 35.0%
TTAGCACCATCATAGGAAAA+AGG - chr1.3:8455242-8455261 MS.gene33139:intron 35.0%
TTCCCATGATATCCTCATAT+CGG + chr1.3:8455076-8455095 None:intergenic 35.0%
TTCCGATATGAGGATATCAT+GGG - chr1.3:8455071-8455090 MS.gene33139:CDS 35.0%
TTGTAAGTTTGATACACTCG+GGG - chr1.3:8454243-8454262 MS.gene33139:intron 35.0%
TTGTGCATCATAGAATTGGT+CGG + chr1.3:8452279-8452298 None:intergenic 35.0%
TTTATGGCAACTTAGCAAGA+TGG + chr1.3:8455869-8455888 None:intergenic 35.0%
! AATGTTGATAAGCGATGCAA+TGG - chr1.3:8455765-8455784 MS.gene33139:intron 35.0%
! AGTAAAGGTTGCTTTAGTCA+TGG - chr1.3:8454825-8454844 MS.gene33139:CDS 35.0%
! CATTTTGCCAAGAATACAGA+AGG - chr1.3:8455007-8455026 MS.gene33139:CDS 35.0%
! GATAGGAACAAATTTTCCAG+AGG + chr1.3:8452144-8452163 None:intergenic 35.0%
! GATTACTGTGGTCTTAATCT+TGG + chr1.3:8456242-8456261 None:intergenic 35.0%
! GTTTTCAACTACTATGCAGA+TGG - chr1.3:8452101-8452120 MS.gene33139:CDS 35.0%
! TATTGCTGAGTGTCTTGTTA+AGG - chr1.3:8452735-8452754 MS.gene33139:intron 35.0%
!! CATTTTAGGGACCAAAATGA+TGG + chr1.3:8454068-8454087 None:intergenic 35.0%
!! CCAAAGTATGATTTGTTGCA+GGG - chr1.3:8456160-8456179 MS.gene33139:CDS 35.0%
!! CTTTATTGAAGGGTTGGTAA+TGG - chr1.3:8454963-8454982 MS.gene33139:CDS 35.0%
!! GTAATGGATGCTAAGAAGAA+AGG - chr1.3:8454979-8454998 MS.gene33139:CDS 35.0%
!!! AGCAACTTTTGCTGATTCTA+TGG + chr1.3:8452629-8452648 None:intergenic 35.0%
!!! TTTTAGTTCTTGAGTGTGTG+AGG + chr1.3:8454284-8454303 None:intergenic 35.0%
AAAGTGGCCAAACTAACTGT+CGG - chr1.3:8454886-8454905 MS.gene33139:intron 40.0%
AATCCTTAGTTTCACTGGTG+GGG - chr1.3:8454468-8454487 MS.gene33139:CDS 40.0%
ATAAGCTGTGTGACAGGAAA+GGG - chr1.3:8453909-8453928 MS.gene33139:intron 40.0%
ATGTACCTTGGACCTTGAAA+TGG + chr1.3:8452190-8452209 None:intergenic 40.0%
CAAACTAGCTCAGATATTCC+GGG - chr1.3:8455485-8455504 MS.gene33139:intron 40.0%
CACACAGCTTATAAGACCTT+TGG + chr1.3:8453901-8453920 None:intergenic 40.0%
CACAGCTTATAAGACCTTTG+GGG + chr1.3:8453899-8453918 None:intergenic 40.0%
CAGCTACATACTTACAGTCA+TGG - chr1.3:8456033-8456052 MS.gene33139:intron 40.0%
CCAAACTAGCTCAGATATTC+CGG - chr1.3:8455484-8455503 MS.gene33139:intron 40.0%
CCCTGCAACAAATCATACTT+TGG + chr1.3:8456163-8456182 None:intergenic 40.0%
CCCTTCAATAAAGTTAGCAG+AGG + chr1.3:8454956-8454975 None:intergenic 40.0%
CTGCTAACATTGTGAAAGGA+GGG - chr1.3:8454599-8454618 MS.gene33139:intron 40.0%
CTTTCTTACAATGCATCCAG+GGG - chr1.3:8453947-8453966 MS.gene33139:intron 40.0%
GAAGGGAAGGAAATCTCATA+TGG - chr1.3:8455025-8455044 MS.gene33139:CDS 40.0%
GAATAGTTGTATACCTGGGT+TGG + chr1.3:8453589-8453608 None:intergenic 40.0%
GACACTCATACTATACCTGA+AGG + chr1.3:8455182-8455201 None:intergenic 40.0%
GACTTTCTTACAATGCATCC+AGG - chr1.3:8453945-8453964 MS.gene33139:intron 40.0%
GAGGAAGGAGTTAGAATTCT+CGG - chr1.3:8453299-8453318 MS.gene33139:CDS 40.0%
GCCAACACCTTCTTATACAA+TGG - chr1.3:8456267-8456286 MS.gene33139:CDS 40.0%
GCTAACAAAAGACACACTCA+AGG + chr1.3:8454142-8454161 None:intergenic 40.0%
GTACATTGCTTTCATTTGGC+TGG - chr1.3:8453870-8453889 MS.gene33139:intron 40.0%
GTAGCTGCTAACATTGTGAA+AGG - chr1.3:8454595-8454614 MS.gene33139:intron 40.0%
GTTCCGATATGAGGATATCA+TGG - chr1.3:8455070-8455089 MS.gene33139:CDS 40.0%
TATAAGCTGTGTGACAGGAA+AGG - chr1.3:8453908-8453927 MS.gene33139:intron 40.0%
TCAAAGATGCACAGCAGTAA+AGG - chr1.3:8454810-8454829 MS.gene33139:CDS 40.0%
TGCAATGGTTCCTCTTCAAA+TGG - chr1.3:8454519-8454538 MS.gene33139:intron 40.0%
TTCCTTCCCTTCTGTATTCT+TGG + chr1.3:8455017-8455036 None:intergenic 40.0%
TTGATTGGGTGAGGGAAAAA+GGG + chr1.3:8452230-8452249 None:intergenic 40.0%
TTTGATTGGGTGAGGGAAAA+AGG + chr1.3:8452231-8452250 None:intergenic 40.0%
TTTGGTCCCTAAAATGTGTG+AGG - chr1.3:8454072-8454091 MS.gene33139:intron 40.0%
! AACTCTGCTCTTTTCCAAAG+TGG + chr1.3:8452673-8452692 None:intergenic 40.0%
! ACACTGCCTCACACATTTTA+GGG + chr1.3:8454081-8454100 None:intergenic 40.0%
! AGGAACAAATTTTCCAGAGG+AGG + chr1.3:8452141-8452160 None:intergenic 40.0%
! CCCATTGTATAAGAAGGTGT+TGG + chr1.3:8456271-8456290 None:intergenic 40.0%
! CTAGTGGTTGGATTGATGAT+AGG + chr1.3:8452161-8452180 None:intergenic 40.0%
! GGTTGCTTTAGTCATGGAAT+CGG - chr1.3:8454831-8454850 MS.gene33139:CDS 40.0%
! GTGCATCCTTTTTCCTATGA+TGG + chr1.3:8455251-8455270 None:intergenic 40.0%
! TATGGGCTAAAACTCCACTT+TGG - chr1.3:8452656-8452675 MS.gene33139:intron 40.0%
! TATGTGCTACTGTTACCTGT+AGG + chr1.3:8454629-8454648 None:intergenic 40.0%
! TGTTCTTGAAGATGCTGACT+TGG - chr1.3:8454567-8454586 MS.gene33139:intron 40.0%
!! GATAGTGGAATTGGTTCTCA+AGG - chr1.3:8456190-8456209 MS.gene33139:CDS 40.0%
!! GCCAAAGTATGATTTGTTGC+AGG - chr1.3:8456159-8456178 MS.gene33139:CDS 40.0%
!! GGTTTGAAGGATAGTGGAAT+TGG - chr1.3:8456181-8456200 MS.gene33139:CDS 40.0%
!! TGAAGATGCTGACTTGGATT+TGG - chr1.3:8454573-8454592 MS.gene33139:intron 40.0%
!! TGATTTGTTGCAGGGTTTGA+AGG - chr1.3:8456168-8456187 MS.gene33139:CDS 40.0%
!! TGTTGGCAAGTTGATTACTG+TGG + chr1.3:8456254-8456273 None:intergenic 40.0%
!! TTTGGTGTCATATTGTGCAG+AGG - chr1.3:8453280-8453299 MS.gene33139:CDS 40.0%
!!! TCTCATATGGCCACTTTTGT+TGG - chr1.3:8455038-8455057 MS.gene33139:CDS 40.0%
AACAGCTTGTACACAGGAAG+AGG - chr1.3:8452594-8452613 MS.gene33139:CDS 45.0%
AAGAGCAGAGTTGCTTCACA+AGG - chr1.3:8452681-8452700 MS.gene33139:intron 45.0%
AAGTGGAACAAATCCTCCTC+TGG - chr1.3:8452125-8452144 MS.gene33139:CDS 45.0%
ACCTGAAAAGGGAAGTGATC+AGG + chr1.3:8455832-8455851 None:intergenic 45.0%
ACTACTATGCAGATGGGAAG+TGG - chr1.3:8452108-8452127 MS.gene33139:CDS 45.0%
AGGATAGTTAAAAGGCGGGA+TGG + chr1.3:8453500-8453519 None:intergenic 45.0%
AGTGGAAATAAGCTTGTGCG+CGG + chr1.3:8452319-8452338 None:intergenic 45.0%
ATAAGCGATGCAATGGAGAC+AGG - chr1.3:8455772-8455791 MS.gene33139:intron 45.0%
ATCTTGCTTGAGCCTCTTGT+TGG + chr1.3:8454328-8454347 None:intergenic 45.0%
ATGGCAACTTAGCAAGATGG+AGG + chr1.3:8455866-8455885 None:intergenic 45.0%
ATGGCGAATTCCTTCTTCGA+CGG + chr1.3:8455139-8455158 None:intergenic 45.0%
ATGGCTAAAACAACTCCGAG+TGG + chr1.3:8453481-8453500 None:intergenic 45.0%
ATGGGAAGAACCATTTGGAC+CGG - chr1.3:8455089-8455108 MS.gene33139:intron 45.0%
ATGGGTCAGATATTCCGGTA+CGG + chr1.3:8455297-8455316 None:intergenic 45.0%
ATTGCTCCAGCTCTTATTGC+TGG - chr1.3:8453541-8453560 MS.gene33139:intron 45.0%
CAAGGCTGCAGCAATATTGA+AGG - chr1.3:8452699-8452718 MS.gene33139:intron 45.0%
CCGGAATATCTGAGCTAGTT+TGG + chr1.3:8455487-8455506 None:intergenic 45.0%
GAGTTTCCAGCAATAAGAGC+TGG + chr1.3:8453550-8453569 None:intergenic 45.0%
GCTGCTAACATTGTGAAAGG+AGG - chr1.3:8454598-8454617 MS.gene33139:intron 45.0%
GGAGTTAGAATTCTCGGAGA+AGG - chr1.3:8453305-8453324 MS.gene33139:CDS 45.0%
GGTTGTTAGATCAGGGGATT+TGG - chr1.3:8453262-8453281 MS.gene33139:CDS 45.0%
GTGTCATATTGTGCAGAGGA+AGG - chr1.3:8453284-8453303 MS.gene33139:CDS 45.0%
GTTCCTCTTCAAATGGAGCT+TGG - chr1.3:8454526-8454545 MS.gene33139:intron 45.0%
TACTTCAGTGACAGCATCCT+TGG + chr1.3:8452776-8452795 None:intergenic 45.0%
TAGTTCTTGAGTGTGTGAGG+CGG + chr1.3:8454281-8454300 None:intergenic 45.0%
TCACTGCATTCTCTGTCGAA+CGG - chr1.3:8455649-8455668 MS.gene33139:CDS 45.0%
TCTCGGAGAAGGAAAGTTTC+TGG - chr1.3:8453316-8453335 MS.gene33139:CDS 45.0%
TGCCAAGAATACAGAAGGGA+AGG - chr1.3:8455012-8455031 MS.gene33139:CDS 45.0%
TGGCAACTTAGCAAGATGGA+GGG + chr1.3:8455865-8455884 None:intergenic 45.0%
TTGCAGGGTTTGAAGGATAG+TGG - chr1.3:8456175-8456194 MS.gene33139:CDS 45.0%
TTGTGTGTGCAGATTCCACT+CGG - chr1.3:8453463-8453482 MS.gene33139:CDS 45.0%
! ACCTGATCACTTCCCTTTTC+AGG - chr1.3:8455828-8455847 MS.gene33139:intron 45.0%
! CTGGTCTCTGATAGTTTTCC+AGG - chr1.3:8453335-8453354 MS.gene33139:CDS 45.0%
! GACACTGCCTCACACATTTT+AGG + chr1.3:8454082-8454101 None:intergenic 45.0%
! GGTCTTATAAGCTGTGTGAC+AGG - chr1.3:8453903-8453922 MS.gene33139:intron 45.0%
! TAGTTGTATACCTGGGTTGG+TGG + chr1.3:8453586-8453605 None:intergenic 45.0%
!! ACAGGAAAGGGTTCTGAGAT+TGG - chr1.3:8453921-8453940 MS.gene33139:intron 45.0%
!! ATACCTGGGTTGGTGGTTTA+AGG + chr1.3:8453579-8453598 None:intergenic 45.0%
!! GGTTGGTGGTTTAAGGACAA+TGG + chr1.3:8453572-8453591 None:intergenic 45.0%
!! TGCAAGCAATTTTGGCCTTC+AGG - chr1.3:8455164-8455183 MS.gene33139:intron 45.0%
ACAGGCAAAACCGGTCCAAA+TGG + chr1.3:8455102-8455121 None:intergenic 50.0%
AGGAGGACCGACAGTTAGTT+TGG + chr1.3:8454896-8454915 None:intergenic 50.0%
ATAGAATACTCCCTCCGTCC+CGG + chr1.3:8455506-8455525 None:intergenic 50.0%
ATCAATTCAGCACCAGCTCG+CGG - chr1.3:8455805-8455824 MS.gene33139:intron 50.0%
ATCCAGGGGTGAACTGCATA+AGG - chr1.3:8453961-8453980 MS.gene33139:intron 50.0%
CCACCAAGCTCCATTTGAAG+AGG + chr1.3:8454532-8454551 None:intergenic 50.0%
CCTCTTCAAATGGAGCTTGG+TGG - chr1.3:8454529-8454548 MS.gene33139:intron 50.0%
CGATGGCTATGTTGTGCACA+AGG - chr1.3:8452989-8453008 MS.gene33139:intron 50.0%
CTAGCTCAGATATTCCGGGA+CGG - chr1.3:8455489-8455508 MS.gene33139:intron 50.0%
CTCTAATACTCCCTCCGTAC+CGG - chr1.3:8455280-8455299 MS.gene33139:intron 50.0%
GCAGAGGATTCTGTGATGAC+CGG + chr1.3:8454940-8454959 None:intergenic 50.0%
GGAGATTGCAAAACCAGCCA+AGG - chr1.3:8452756-8452775 MS.gene33139:intron 50.0%
GTCAGATATTCCGGTACGGA+GGG + chr1.3:8455293-8455312 None:intergenic 50.0%
TACCTTATGCAGTTCACCCC+TGG + chr1.3:8453966-8453985 None:intergenic 50.0%
TGAAAGGAGGGTTCTCCTAC+AGG - chr1.3:8454611-8454630 MS.gene33139:intron 50.0%
TGCTGTAGCTGCGCTACATA+TGG - chr1.3:8453848-8453867 MS.gene33139:CDS 50.0%
TGTCCCCACCAGTGAAACTA+AGG + chr1.3:8454474-8454493 None:intergenic 50.0%
TGTCCTTAAACCACCAACCC+AGG - chr1.3:8453573-8453592 MS.gene33139:intron 50.0%
ACTAACTGTCGGTCCTCCTG+AGG - chr1.3:8454897-8454916 MS.gene33139:intron 55.0%
AGTTTCACTGGTGGGGACAC+TGG - chr1.3:8454475-8454494 MS.gene33139:CDS 55.0%
ATGTCGCAGTCATCCTCAGG+AGG + chr1.3:8454913-8454932 None:intergenic 55.0%
ATGTCTGTGCGAGCGCATTG+TGG + chr1.3:8453084-8453103 None:intergenic 55.0%
CTCAGATATTCCGGGACGGA+GGG - chr1.3:8455493-8455512 MS.gene33139:intron 55.0%
GGATGACTGCGACATCACAC+CGG - chr1.3:8454918-8454937 MS.gene33139:intron 55.0%
GGTCAGATATTCCGGTACGG+AGG + chr1.3:8455294-8455313 None:intergenic 55.0%
GTGATGTCGCAGTCATCCTC+AGG + chr1.3:8454916-8454935 None:intergenic 55.0%
TCAGTGACAGCATCCTTGGC+TGG + chr1.3:8452772-8452791 None:intergenic 55.0%
!! CATTTGGCTGGCTTCCCCAA+AGG - chr1.3:8453882-8453901 MS.gene33139:intron 55.0%
AAGTGATCAGGTCCGCGAGC+TGG + chr1.3:8455820-8455839 None:intergenic 60.0%
GCGCATTGTGGCTGCATCGT+CGG + chr1.3:8453072-8453091 None:intergenic 60.0%
GCTCAGATATTCCGGGACGG+AGG - chr1.3:8455492-8455511 MS.gene33139:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 8452059 8456294 8452059 ID=MS.gene33139
chr1.3 mRNA 8452059 8456294 8452059 ID=MS.gene33139.t1;Parent=MS.gene33139
chr1.3 exon 8456150 8456294 8456150 ID=MS.gene33139.t1.exon1;Parent=MS.gene33139.t1
chr1.3 CDS 8456150 8456294 8456150 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8455561 8455754 8455561 ID=MS.gene33139.t1.exon2;Parent=MS.gene33139.t1
chr1.3 CDS 8455561 8455754 8455561 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8454962 8455090 8454962 ID=MS.gene33139.t1.exon3;Parent=MS.gene33139.t1
chr1.3 CDS 8454962 8455090 8454962 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8454759 8454878 8454759 ID=MS.gene33139.t1.exon4;Parent=MS.gene33139.t1
chr1.3 CDS 8454759 8454878 8454759 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8454371 8454507 8454371 ID=MS.gene33139.t1.exon5;Parent=MS.gene33139.t1
chr1.3 CDS 8454371 8454507 8454371 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8453721 8453876 8453721 ID=MS.gene33139.t1.exon6;Parent=MS.gene33139.t1
chr1.3 CDS 8453721 8453876 8453721 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8453168 8453546 8453168 ID=MS.gene33139.t1.exon7;Parent=MS.gene33139.t1
chr1.3 CDS 8453168 8453546 8453168 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8452504 8452620 8452504 ID=MS.gene33139.t1.exon8;Parent=MS.gene33139.t1
chr1.3 CDS 8452504 8452620 8452504 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
chr1.3 exon 8452059 8452172 8452059 ID=MS.gene33139.t1.exon9;Parent=MS.gene33139.t1
chr1.3 CDS 8452059 8452172 8452059 ID=cds.MS.gene33139.t1;Parent=MS.gene33139.t1
Gene Sequence

>MS.gene33139

ATGGCAGGGAGTGAAATATTTGCAGAGATTATAGATGGTGATGTTTTCAACTACTATGCAGATGGGAAGTGGAACAAATCCTCCTCTGGAAAATTTGTTCCTATCATCAATCCAACCACTAGAAAAATCCATTTCAAGGTCCAAGGTACATGACATATTATATATTTACCCTTTTTCCCTCACCCAATCAAAATTTACTTTCAATCTTTACTCTTTACCGACCAATTCTATGATGCACAAGTGAGATAAATCTTACACCGCGCACAAGCTTATTTCCACTATTTGATCAATAAGTCTAACCATGGATCAAAAGTGATATTGTGTGAGTTATTGATCTAATGGTCGAAAATATATTTGTGCACGCTCCAAGACTAATTGATATCATGTTCAAAATTAAATACATATCTTGATTTTACTGTTTTCTTGATGTAATTCAAAAATAATATATATCATGGTTAATATTGCTGATTTTTTTTAAAGGTGTTACAATTTTTTTTACTATTTGGAATATTAATTCTTTTTAATCCAAATGAAAAACAGCTTGTACACAGGAAGAGGTTAACAAAGCCATAGAATCAGCAAAAGTTGCTCAAAAATTATGGGCTAAAACTCCACTTTGGAAAAGAGCAGAGTTGCTTCACAAGGCTGCAGCAATATTGAAGGAACACAAAGCACCTATTGCTGAGTGTCTTGTTAAGGAGATTGCAAAACCAGCCAAGGATGCTGTCACTGAAGTATGTATAAACAGTTTAACTTTTCATTTATTTAATGGTTGTAAAGTTTTTTTTTTCTCTTTCATGCTTTATTTTTATTGTTAAAAGAATACATGTTAGTGACAATTTATAATTTGTTGTGTTCGGTTATTGAGTAGCAATGAAGTGTAACAATAAATTACAGAATCACATTAGACATACATCAATATTTTGTATTCGATGGCTATGTTGTGCACAAGGTTTTGAAATTTCGGTTGTTTCAATATTCTTGATGTTGCGGAAAATTATGGTCAAATACCGACGATGCAGCCACAATGCGCTCGCACAGACATAAAAAACCTTTACGTCGTGAACATATTTACAGTTGCGGACAGTTGTTTAAAACCTCTATTGTTTCTTAGATTTGGTCATTTGAGTCTTCAATTATGACTATTATATTTGTCAACTGCTGTGTAACATGTAAATAAATGCTACGACTTTTATATATGTAGGTTGTTAGATCAGGGGATTTGGTGTCATATTGTGCAGAGGAAGGAGTTAGAATTCTCGGAGAAGGAAAGTTTCTGGTCTCTGATAGTTTTCCAGGCAATGAAAGAACTAAATACTGTCTCACTTCAAAGGTATTGATTGACCTGTCTGTTCTTACATAGTTATTTAACTAAACTAGTTTTTTTTTTCTTTCTCACAAATTTTGTGTGTGCAGATTCCACTCGGAGTTGTTTTAGCCATCCCGCCTTTTAACTATCCTGTTAATCTAGCTGTTTCAAAGATTGCTCCAGCTCTTATTGCTGGAAACTCCATTGTCCTTAAACCACCAACCCAGGTATACAACTATTCATAGACCATATACATCATAATAACTATAGTTGTAGAAAGTACTTTGATATATTTCAAAGTAGTGAATAGAGTGAAGAGCGCAGATGCAAATACGTTTATATATATTATTCTAATCTAACTAATCTAATTAATGGACCGAATGCAATTGTTACATATTATTACAAAATATACGCTATTTACAACACTATTTTTCGATTATTTAAATAAAATCTAAAGTACCAAATGTATTATGAATAGGGTGCTGTAGCTGCGCTACATATGGTACATTGCTTTCATTTGGCTGGCTTCCCCAAAGGTCTTATAAGCTGTGTGACAGGAAAGGGTTCTGAGATTGGTGACTTTCTTACAATGCATCCAGGGGTGAACTGCATAAGGTAATATTCACTTCTTCGGCTATCTTGATATCATTATTGTCCACTTTTGTTTTGGTTTTATTATACAAAAATTCAGAGTAAACCATCATTTTGGTCCCTAAAATGTGTGAGGCAGTGTCATTAAAGTCAATGAATGTATTGAAATTAGAAAAATATCCTTGAGTGTGTCTTTTGTTAGCAATTTTACGGACTAGACTGACTAACGAAAGACACGTATGAGAACTAAACTAACCAACAAAAGACAAATATGAGGTATGTTTTTGTAAGTTTGATACACTCGGGGACTATAGTGACACCGCCTCACACACTCAAGAACTAAAATGACAATTGTAGTTACAACTTCCAACAAGAGGCTCAAGCAAGATACAAAACAACATGAAATACTTTGTATACTAAATAACGAATAGAGAAAAATTCTTAAAAAATTTCTTACTAGAGAGGTGTTTTATCATAGCAAGTGAACATTTTTTGATCTAATTCACATTAATCCTTAGTTTCACTGGTGGGGACACTGGAATAGCAATATCAAAGAAGTCTGCAATGGTTCCTCTTCAAATGGAGCTTGGTGGAAAAGATGCTTGCATTGTTCTTGAAGATGCTGACTTGGATTTGGTAGCTGCTAACATTGTGAAAGGAGGGTTCTCCTACAGGTAACAGTAGCACATATATAGTACCATCATTATTATCTACTCGGGTGTCATTTAGATACGCAGACTTGTAGTTTCTCGCAATATTTCCACATTTTCTTGATTTCATAACTTTATTGACGAGAACTGACTTATACATAAAAAATTTCTCATTGAAATTTTCTTTTGATATGTCAGTGGTCAAAGATGCACAGCAGTAAAGGTTGCTTTAGTCATGGAATCGGTTGCTGACATACTTGTAAAGAAAATCAAGGATAAAGTGGCCAAACTAACTGTCGGTCCTCCTGAGGATGACTGCGACATCACACCGGTCATCACAGAATCCTCTGCTAACTTTATTGAAGGGTTGGTAATGGATGCTAAGAAGAAAGGAGCAACATTTTGCCAAGAATACAGAAGGGAAGGAAATCTCATATGGCCACTTTTGTTGGATAATGTTCGTTCCGATATGAGGATATCATGGGAAGAACCATTTGGACCGGTTTTGCCTGTTATCAGAATAAATTCCGTCGAAGAAGGAATTCGCCATTGTAATGCAAGCAATTTTGGCCTTCAGGTATAGTATGAGTGTCAGTGCATCACTTGATCAAAATGCATATATTCAAAAAACAATTAGCACCATCATAGGAAAAAGGATGCACTTTATGCTTCTCTAATACTCCCTCCGTACCGGAATATCTGACCCATTTACTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACTCTAATTAATACTACTTTCATCATTCCCAATTCAATATATTCCATTTTCCCCTTTATTTATACATTTTTCTTAATCTGTGTGAAAAACCAAACTAGCTCAGATATTCCGGGACGGAGGGAGTATTCTATAATCTATATACATGTAAAAGAAATTGTCACTTATAATCAACTTTTTATTCTAACACCATTCTCTCCAAAACAAAAAATATGATTTTATAAATTACTTTACTTGAGAGTGTCACAACATACTCTTCACTGCATTCTCTGTCGAACGGCATTAATATTTTTCAGGGCACAAAAAATTATATCATTATTATTTTATTTTGCATGACACAGGGGTGCGTGTTTACAAAAGACATAAACAAAGCAATGTTGATAAGCGATGCAATGGAGACAGGAACAGTTCAAATCAATTCAGCACCAGCTCGCGGACCTGATCACTTCCCTTTTCAGGTGCAATATTTTCCCTCCATCTTGCTAAGTTGCCATAAAATTTCATACCTTCGAACTTCAATCCTAATTATATATATATTCCTTAAGTTGTTCTTAGGAAGAAAAAAAATTCAAAGGTTTCTGAAAATTCATATGCAACATAGTTGATCGATATGATAGCTTAACCACCAAGATATTAAATTGCAGCTACATACTTACAGTCATGGTTGCATCTCAAGTCCTTGTTAAGAATAGATATGAAACCATGCAGATTTATGAACATATTTTAGTGAATATCTTTGAATAGTTAATTTTTTCCATGTCTAAACTGCCAAAGTATGATTTGTTGCAGGGTTTGAAGGATAGTGGAATTGGTTCTCAAGGAATCACCAACAGTATTAACATGATGACCAAGATTAAGACCACAGTAATCAACTTGCCAACACCTTCTTATACAATGGGATAA
Protein sequence

>MS.gene33139.t1

MAGSEIFAEIIDGDVFNYYADGKWNKSSSGKFVPIINPTTRKIHFKVQACTQEEVNKAIESAKVAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKSAMVPLQMELGGKDACIVLEDADLDLVAANIVKGGFSYSGQRCTAVKVALVMESVADILVKKIKDKVAKLTVGPPEDDCDITPVITESSANFIEGLVMDAKKKGATFCQEYRREGNLIWPLLLDNVRSDMRISWEEPFGPVLPVIRINSVEEGIRHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKIKTTVINLPTPSYTMG