AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016051

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016051.t1 MTR_1g014320 98.387 496 8 0 1 496 1 496 0.0 1008
MS.gene016051.t1 MTR_4g131180 90.121 496 49 0 1 496 1 496 0.0 940
MS.gene016051.t1 MTR_4g131180 89.760 459 47 0 1 459 1 459 0.0 868
MS.gene016051.t1 MTR_2g067660 32.272 471 298 7 22 482 53 512 1.38e-71 236
MS.gene016051.t1 MTR_8g064170 31.762 488 305 10 21 493 66 540 1.41e-60 208
MS.gene016051.t1 MTR_3g078490 33.761 468 285 9 19 469 41 500 2.68e-60 207
MS.gene016051.t1 MTR_3g078550 33.830 470 282 11 19 469 11 470 3.98e-59 203
MS.gene016051.t1 MTR_4g107040 29.817 493 308 10 21 493 69 543 4.20e-55 193
MS.gene016051.t1 MTR_8g083530 28.049 492 320 9 19 494 26 499 2.35e-54 190
MS.gene016051.t1 MTR_3g078170 29.918 488 314 11 21 493 67 541 3.11e-53 188
MS.gene016051.t1 MTR_4g106510 31.381 478 303 10 19 477 11 482 4.43e-53 187
MS.gene016051.t1 MTR_6g086300 28.889 495 312 11 19 494 25 498 1.33e-52 186
MS.gene016051.t1 MTR_6g086300 28.889 495 312 11 19 494 25 498 1.33e-52 186
MS.gene016051.t1 MTR_6g086340 28.827 503 325 11 11 493 6 495 2.45e-52 185
MS.gene016051.t1 MTR_3g078550 33.710 442 264 11 47 469 9 440 2.70e-52 184
MS.gene016051.t1 MTR_2g009750 29.583 480 313 11 22 487 20 488 3.79e-47 171
MS.gene016051.t1 MTR_2g009750 29.583 480 313 11 22 487 21 489 4.23e-47 171
MS.gene016051.t1 MTR_2g009750 29.522 481 313 11 22 487 21 490 4.53e-47 171
MS.gene016051.t1 MTR_8g083520 27.122 483 301 10 19 493 17 456 3.60e-46 167
MS.gene016051.t1 MTR_2g034160 28.601 486 319 12 19 485 52 528 8.81e-46 169
MS.gene016051.t1 MTR_8g064170 29.098 488 286 11 21 493 66 508 6.70e-45 165
MS.gene016051.t1 MTR_4g093170 28.211 475 319 9 22 483 48 513 4.29e-44 163
MS.gene016051.t1 MTR_3g078170 29.899 398 260 9 21 407 67 456 6.58e-40 150
MS.gene016051.t1 MTR_3g078490 34.421 337 202 7 19 343 11 340 2.08e-39 147
MS.gene016051.t1 MTR_8g083520 29.060 351 209 6 148 493 61 376 2.30e-38 144
MS.gene016051.t1 MTR_3g078170 31.230 317 203 6 21 330 67 375 2.53e-33 131
MS.gene016051.t1 MTR_3g078170 31.230 317 203 6 21 330 67 375 3.71e-33 131
MS.gene016051.t1 MTR_1399s0020 28.529 340 189 6 160 493 55 346 7.44e-33 128
MS.gene016051.t1 MTR_2g042330 24.431 483 339 14 19 487 25 495 1.11e-29 122
MS.gene016051.t1 MTR_8g083530 26.994 326 213 5 19 332 26 338 3.79e-29 118
MS.gene016051.t1 MTR_1690s0010 27.628 333 228 6 22 348 15 340 1.36e-28 116
MS.gene016051.t1 MTR_1222s0010 31.124 347 213 13 71 407 22 352 5.84e-28 118
MS.gene016051.t1 MTR_2g097950 28.615 325 208 10 158 467 120 435 2.42e-24 106
MS.gene016051.t1 MTR_3g088150 24.891 458 317 12 39 485 7 448 2.44e-23 103
MS.gene016051.t1 MTR_8g094600 25.408 429 285 13 53 467 74 481 7.11e-23 102
MS.gene016051.t1 MTR_1g029840 25.806 403 280 10 75 468 37 429 1.13e-21 98.2
MS.gene016051.t1 MTR_1g029840 24.711 433 301 10 45 468 13 429 1.42e-21 97.8
MS.gene016051.t1 MTR_8g076480 28.797 316 216 6 158 467 109 421 1.80e-21 97.8
MS.gene016051.t1 MTR_2g097950 26.019 319 189 9 158 467 120 400 1.89e-16 82.0
MS.gene016051.t1 MTR_1314s0010 26.970 330 212 10 158 468 1 320 2.29e-15 77.8
MS.gene016051.t1 MTR_4g065040 25.581 301 209 7 158 448 105 400 1.98e-12 69.7
MS.gene016051.t1 MTR_4g107940 25.836 329 209 13 22 329 57 371 1.59e-11 67.0
MS.gene016051.t1 MTR_4g107940 25.836 329 209 13 22 329 57 371 1.94e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016051.t1 AT2G24270 86.492 496 67 0 1 496 41 536 0.0 912
MS.gene016051.t1 AT2G24270 86.492 496 67 0 1 496 1 496 0.0 912
MS.gene016051.t1 AT2G24270 86.492 496 67 0 1 496 1 496 0.0 912
MS.gene016051.t1 AT2G24270 86.492 496 67 0 1 496 1 496 0.0 911
MS.gene016051.t1 AT1G74920 35.135 481 281 12 19 477 11 482 4.20e-69 229
MS.gene016051.t1 AT1G74920 34.927 481 277 13 19 477 11 477 1.24e-66 223
MS.gene016051.t1 AT1G79440 31.983 469 302 6 22 482 59 518 4.70e-66 222
MS.gene016051.t1 AT3G48170 31.667 480 299 11 19 477 11 482 2.31e-62 212
MS.gene016051.t1 AT3G48000 30.470 489 310 10 21 493 63 537 1.24e-58 202
MS.gene016051.t1 AT1G23800 30.435 483 316 9 22 493 60 533 3.26e-57 199
MS.gene016051.t1 AT3G24503 28.482 481 325 8 19 488 23 495 2.72e-53 187
MS.gene016051.t1 AT3G66658 28.016 489 311 13 11 467 31 510 4.52e-44 163
MS.gene016051.t1 AT2G14170 28.931 477 313 11 22 483 11 476 4.78e-44 162
MS.gene016051.t1 AT3G66658 28.016 489 311 13 11 467 31 510 9.84e-44 163
MS.gene016051.t1 AT2G14170 29.114 474 312 10 22 482 120 582 3.93e-43 161
MS.gene016051.t1 AT2G14170 28.931 477 313 11 22 483 120 585 4.18e-43 161
MS.gene016051.t1 AT1G23800 31.013 316 203 6 22 330 60 367 4.91e-34 133
MS.gene016051.t1 AT1G54100 24.224 483 340 12 19 487 24 494 1.83e-32 130
MS.gene016051.t1 AT1G54100 24.224 483 340 12 19 487 24 494 1.83e-32 130
MS.gene016051.t1 AT1G44170 27.044 318 221 8 158 468 49 362 2.27e-22 99.8
MS.gene016051.t1 AT1G44170 27.044 318 221 8 158 468 112 425 2.95e-22 100
MS.gene016051.t1 AT1G44170 27.044 318 221 8 158 468 112 425 2.95e-22 100
MS.gene016051.t1 AT4G34240 23.973 438 296 11 46 468 58 473 9.61e-20 92.8
MS.gene016051.t1 AT4G34240 23.973 438 296 11 46 468 73 488 1.26e-19 92.4
MS.gene016051.t1 AT4G34240 26.183 317 225 6 158 468 33 346 9.22e-19 89.0
MS.gene016051.t1 AT4G36250 26.935 323 216 10 158 467 108 423 8.54e-18 86.3
MS.gene016051.t1 AT5G62530 24.425 348 231 15 19 351 56 386 1.32e-12 70.5
MS.gene016051.t1 AT4G34240 26.415 265 166 9 71 322 92 340 7.71e-12 67.4

Find 130 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTAATGCAAGCAATTT+TGG 0.134284 1.1:-7738106 MS.gene016051:CDS
ATACCTGGGTTGGTGGTTTA+AGG 0.181685 1.1:+7739686 None:intergenic
TTCCTTCCCTTCTGTATTCT+TGG 0.223634 1.1:+7738248 None:intergenic
TCTCGGAGAAGGAAAGTTTC+TGG 0.263915 1.1:-7739947 MS.gene016051:CDS
TTTGAAACAGCTAGATTAAC+AGG 0.291774 1.1:+7739745 None:intergenic
ACGGAATTTATTCTGATAAC+AGG 0.316059 1.1:+7738145 None:intergenic
GGTTGTTAGATCAGGGGATT+TGG 0.337868 1.1:-7740001 MS.gene016051:CDS
GATTACTGTGGTCTTAATCT+TGG 0.346129 1.1:+7737023 None:intergenic
GGAAAATATTGCACCTGAAA+AGG 0.346437 1.1:+7737421 None:intergenic
TATATGTAGGTTGTTAGATC+AGG 0.348615 1.1:-7740009 MS.gene016051:intron
AGGAGGACCGACAGTTAGTT+TGG 0.359188 1.1:+7738369 None:intergenic
TGAAGATGCTGACTTGGATT+TGG 0.367579 1.1:-7738689 MS.gene016051:CDS
TTGCAGGGTTTGAAGGATAG+TGG 0.372922 1.1:-7737087 MS.gene016051:intron
CACACAGCTTATAAGACCTT+TGG 0.374357 1.1:+7739364 None:intergenic
ACACAGCTTATAAGACCTTT+GGG 0.375552 1.1:+7739365 None:intergenic
ATTGCTCCAGCTCTTATTGC+TGG 0.384524 1.1:-7739721 MS.gene016051:CDS
GAGGAAGGAGTTAGAATTCT+CGG 0.389121 1.1:-7739964 MS.gene016051:CDS
TATGGTACATTGCTTTCATA+TGG 0.390165 1.1:-7739396 MS.gene016051:CDS
AGATTAACAGGATAGTTAAA+AGG 0.392708 1.1:+7739757 None:intergenic
GTACATTGCTTTCATATGGC+TGG 0.398669 1.1:-7739392 MS.gene016051:CDS
TATTTAGTTCTTTCATTGCC+TGG 0.403493 1.1:+7739910 None:intergenic
CTTTATTGAAGGGTTGGTAA+TGG 0.403798 1.1:-7738299 MS.gene016051:CDS
GCCAACACCTTCTTATACAA+TGG 0.407521 1.1:-7736995 MS.gene016051:CDS
GGTTTGAAGGATAGTGGAAT+TGG 0.422091 1.1:-7737081 MS.gene016051:CDS
TTAACAAGACACTCAGCAAT+AGG 0.426100 1.1:+7740530 None:intergenic
ATGTACCTTGGACCTTGAAA+TGG 0.428401 1.1:+7741077 None:intergenic
TATTGCTGAGTGTCTTGTTA+AGG 0.430949 1.1:-7740528 MS.gene016051:CDS
ACATTAATCCTTAGTTTCAC+TGG 0.432236 1.1:-7738799 MS.gene016051:intron
TGCAATGGTTCCTCTTCAAA+TGG 0.433244 1.1:-7738743 MS.gene016051:CDS
TGATTTGTTGCAGGGTTTGA+AGG 0.434669 1.1:-7737094 MS.gene016051:intron
TGCTAACTTTATTGAAGGGT+TGG 0.434842 1.1:-7738305 MS.gene016051:CDS
CTGGTGGTTGGATTGATGAT+AGG 0.435909 1.1:+7741106 None:intergenic
CCAACACCTTCTTATACAAT+GGG 0.438581 1.1:-7736994 MS.gene016051:CDS
ATATTTGCAGAGATTATAGA+TGG 0.438746 1.1:-7741190 MS.gene016051:CDS
GAAAATATTGCACCTGAAAA+GGG 0.439932 1.1:+7737422 None:intergenic
TCCTCTGCTAACTTTATTGA+AGG 0.440983 1.1:-7738310 MS.gene016051:CDS
TACCTTATGCAGTTCACCCC+TGG 0.448155 1.1:+7739299 None:intergenic
TGAAAGGAGGGTTCTCCTAC+AGG 0.449738 1.1:-7738651 MS.gene016051:intron
GACTTTCTTACAATGCATCC+AGG 0.452616 1.1:-7739317 MS.gene016051:CDS
TACTTCAGTGACAGCATCCT+TGG 0.455558 1.1:+7740490 None:intergenic
TTCAATTCCAAGCAAATGGC+AGG 0.458328 1.1:-7741220 None:intergenic
ATAATGTTCGTTCCGATATG+AGG 0.461487 1.1:-7738201 MS.gene016051:CDS
GTTCCGATATGAGGATATCA+TGG 0.465033 1.1:-7738192 MS.gene016051:CDS
TGTTCTTGAAGATGCTGACT+TGG 0.468639 1.1:-7738695 MS.gene016051:CDS
ATAAGCTGTGTGACAGGAAA+GGG 0.469137 1.1:-7739353 MS.gene016051:CDS
TCAGTGACAGCATCCTTGGC+TGG 0.470757 1.1:+7740494 None:intergenic
ATTCTGATAACAGGCAAAAC+CGG 0.474825 1.1:+7738154 None:intergenic
TGCTGTAGCTGCACTACATA+TGG 0.475429 1.1:-7739414 MS.gene016051:CDS
AGAATAAATTCCGTCGAAGA+AGG 0.485859 1.1:-7738136 MS.gene016051:CDS
ACCTGAAAAGGGAAGTGATC+AGG 0.486864 1.1:+7737433 None:intergenic
TTCCCATGATATCCTCATAT+CGG 0.487401 1.1:+7738189 None:intergenic
AAGTGGAACAAATCCTCCTC+TGG 0.487476 1.1:-7741139 MS.gene016051:CDS
ATATGTAGGTTGTTAGATCA+GGG 0.488532 1.1:-7740008 MS.gene016051:intron
TATGGGCTAAAACTCCACTT+TGG 0.488875 1.1:-7740607 MS.gene016051:CDS
GGTTGCTTTAGTCATGGAAT+CGG 0.489106 1.1:-7738431 MS.gene016051:CDS
ATCCAGGGGTGAACTGCATA+AGG 0.490005 1.1:-7739301 MS.gene016051:intron
ATATCATGGGAAGAACCATT+TGG 0.490103 1.1:-7738178 MS.gene016051:CDS
ACAGGCAAAACCGGTCCAAA+TGG 0.493625 1.1:+7738163 None:intergenic
AGTTTCACTGGTGGGGACAC+TGG 0.494684 1.1:-7738787 MS.gene016051:CDS
GGTCTTATAAGCTGTGTGAC+AGG 0.497203 1.1:-7739359 MS.gene016051:CDS
TCAAAGATGCACAGCAGTAA+AGG 0.504769 1.1:-7738452 MS.gene016051:CDS
TCCAAGCAAATGGCAGGGAG+TGG 0.506297 1.1:-7741214 None:intergenic
ACAGGAAAGGGTTCTGAGAT+TGG 0.507660 1.1:-7739341 MS.gene016051:CDS
CCACCAAGCTCCATTTGAAG+AGG 0.508608 1.1:+7738733 None:intergenic
GTTCCTCTTCAAATGGAGCT+TGG 0.511297 1.1:-7738736 MS.gene016051:CDS
GTGATGTCGCAGTCATCCTC+AGG 0.511676 1.1:+7738349 None:intergenic
CAAGGCTGCAGCAATATTGA+AGG 0.514089 1.1:-7740564 MS.gene016051:CDS
ATAAGCGATGCAATGGAGAC+AGG 0.514767 1.1:-7737490 MS.gene016051:CDS
CCTCTTCAAATGGAGCTTGG+TGG 0.517151 1.1:-7738733 MS.gene016051:CDS
ACTACTATGCAGATGGGAAG+TGG 0.523545 1.1:-7741156 MS.gene016051:CDS
AAGTGATCAGGTCCGCGAGC+TGG 0.523854 1.1:+7737445 None:intergenic
AACAGCTTGTACACAGGAAG+AGG 0.524957 1.1:-7740669 MS.gene016051:intron
GCTTTCAACTACTATGCAGA+TGG 0.527011 1.1:-7741163 MS.gene016051:CDS
GGTCATCATGTTAATACTGT+TGG 0.527504 1.1:+7737044 None:intergenic
TAAATACTGTCTCACTTCAA+AGG 0.527755 1.1:-7739893 MS.gene016051:intron
AATCCTTAGTTTCACTGGTG+GGG 0.528272 1.1:-7738794 MS.gene016051:intron
AAAGAAAATCAAGGATAAAG+TGG 0.530683 1.1:-7738392 MS.gene016051:CDS
TGCCAAGAATACAGAAGGGA+AGG 0.531745 1.1:-7738250 MS.gene016051:CDS
ATGGGAAGAACCATTTGGAC+CGG 0.532169 1.1:-7738173 MS.gene016051:CDS
GTAATGGATGCTAAGAAGAA+AGG 0.533888 1.1:-7738283 MS.gene016051:CDS
CATACTTGTAAAGAAAATCA+AGG 0.535139 1.1:-7738401 MS.gene016051:CDS
GAAGGGAAGGAAATCTCATA+TGG 0.535932 1.1:-7738237 MS.gene016051:CDS
TAATCCTTAGTTTCACTGGT+GGG 0.536871 1.1:-7738795 MS.gene016051:intron
CCTCTGCTAACTTTATTGAA+GGG 0.538814 1.1:-7738309 MS.gene016051:CDS
ACTTTCTTACAATGCATCCA+GGG 0.540072 1.1:-7739316 MS.gene016051:CDS
TCTTATCCCATTGTATAAGA+AGG 0.542086 1.1:+7736988 None:intergenic
CATATGGCTGGCTTCCCCAA+AGG 0.543018 1.1:-7739380 MS.gene016051:CDS
TAGTTGTATACCTGGGTTGG+TGG 0.543473 1.1:+7739679 None:intergenic
GAGTTTCCAGCAATAAGAGC+TGG 0.549640 1.1:+7739715 None:intergenic
CAAAATTGCTTGCATTACAA+TGG 0.559581 1.1:+7738107 None:intergenic
GTGTCATATTGTGCAGAGGA+AGG 0.561191 1.1:-7739979 MS.gene016051:CDS
CCCATTGTATAAGAAGGTGT+TGG 0.561818 1.1:+7736994 None:intergenic
TATAAGCTGTGTGACAGGAA+AGG 0.564453 1.1:-7739354 MS.gene016051:CDS
TAACAGGATAGTTAAAAGGC+GGG 0.565103 1.1:+7739761 None:intergenic
GATAGTGGAATTGGTTCTCA+AGG 0.566426 1.1:-7737072 MS.gene016051:CDS
GTAGCTGCTAACATTGTGAA+AGG 0.567909 1.1:-7738667 MS.gene016051:CDS
AAAATCCATTTCAAGGTCCA+AGG 0.568430 1.1:-7741082 MS.gene016051:intron
GGTTGGTGGTTTAAGGACAA+TGG 0.570050 1.1:+7739693 None:intergenic
CGAACATTATCCAACAAAAG+TGG 0.572392 1.1:+7738214 None:intergenic
CTTTCAACTACTATGCAGAT+GGG 0.575718 1.1:-7741162 MS.gene016051:CDS
GGAGTTAGAATTCTCGGAGA+AGG 0.577933 1.1:-7739958 MS.gene016051:CDS
TTGTGTGTGCAGATTCCACT+CGG 0.578498 1.1:-7739799 MS.gene016051:intron
AGTAAAGGTTGCTTTAGTCA+TGG 0.579116 1.1:-7738437 MS.gene016051:CDS
GCAGAGGATTCTGTGATGAC+CGG 0.579247 1.1:+7738325 None:intergenic
ATGGCGAATTCCTTCTTCGA+CGG 0.589654 1.1:+7738126 None:intergenic
CTGCTAACATTGTGAAAGGA+GGG 0.598823 1.1:-7738663 MS.gene016051:CDS
TTAATCCTTAGTTTCACTGG+TGG 0.600395 1.1:-7738796 MS.gene016051:intron
CCCTTCAATAAAGTTAGCAG+AGG 0.600576 1.1:+7738309 None:intergenic
GGAGATTGCAAAACCAGCCA+AGG 0.600790 1.1:-7740507 MS.gene016051:CDS
AATATCAAAGAAGTCTGCAA+TGG 0.609417 1.1:-7738758 MS.gene016051:CDS
GCTGCTAACATTGTGAAAGG+AGG 0.613573 1.1:-7738664 MS.gene016051:CDS
TGTCCTTAAACCACCAACCC+AGG 0.614373 1.1:-7739689 MS.gene016051:intron
TTCCGATATGAGGATATCAT+GGG 0.614684 1.1:-7738191 MS.gene016051:CDS
GAATAGTTGTATACCTGGGT+TGG 0.619472 1.1:+7739676 None:intergenic
TATGTAGGTTGTTAGATCAG+GGG 0.620747 1.1:-7740007 MS.gene016051:intron
AATGTTGATAAGCGATGCAA+TGG 0.626313 1.1:-7737497 MS.gene016051:CDS
AGGATAGTTAAAAGGCGGGA+TGG 0.627333 1.1:+7739765 None:intergenic
ATCAATTCAGCACCAGCTCG+CGG 0.632640 1.1:-7737457 MS.gene016051:CDS
AAGAGCAGAGTTGCTTCACA+AGG 0.641127 1.1:-7740582 MS.gene016051:CDS
TTAACAGGATAGTTAAAAGG+CGG 0.641435 1.1:+7739760 None:intergenic
ACTAACTGTCGGTCCTCCTG+AGG 0.641509 1.1:-7738365 MS.gene016051:CDS
TTTGGTGTCATATTGTGCAG+AGG 0.648388 1.1:-7739983 MS.gene016051:CDS
TCAATTCCAAGCAAATGGCA+GGG 0.650436 1.1:-7741219 None:intergenic
CTTTCTTACAATGCATCCAG+GGG 0.660682 1.1:-7739315 MS.gene016051:CDS
AAAGTGGCCAAACTAACTGT+CGG 0.661745 1.1:-7738376 MS.gene016051:CDS
CACAGCTTATAAGACCTTTG+GGG 0.662828 1.1:+7739366 None:intergenic
ATGTCGCAGTCATCCTCAGG+AGG 0.676524 1.1:+7738352 None:intergenic
ATGGCTAAAACAACTCCGAG+TGG 0.678221 1.1:+7739784 None:intergenic
GGATGACTGCGACATCACAC+CGG 0.698931 1.1:-7738344 MS.gene016051:CDS
TGTTGGCAAGTTGATTACTG+TGG 0.718041 1.1:+7737011 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG + chr1.1:7740382-7740401 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1.1:7740383-7740402 None:intergenic 10.0%
!! TAAGGAATATATATATAATT+AGG + chr1.1:7740848-7740867 None:intergenic 10.0%
!! TTCAAAAATAATATATATCA+TGG - chr1.1:7737422-7737441 MS.gene016051:intron 10.0%
!!! TAAAATCATATTTTTTGTTT+TGG + chr1.1:7740526-7740545 None:intergenic 10.0%
!!! TTAACTTTTCATTTATTTAA+TGG - chr1.1:7737740-7737759 MS.gene016051:intron 10.0%
!! AAAATGGAATATATTGAATT+GGG + chr1.1:7740358-7740377 None:intergenic 15.0%
!! AATCTAACTAATCTAATTAA+TGG - chr1.1:7738653-7738672 MS.gene016051:CDS 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr1.1:7740317-7740336 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1.1:7740381-7740400 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr1.1:7740318-7740337 None:intergenic 15.0%
!! TATAGTTATTATGATGTATA+TGG + chr1.1:7738550-7738569 None:intergenic 15.0%
!!! AATTTATAATTTGTTGTGTT+CGG - chr1.1:7737828-7737847 MS.gene016051:intron 15.0%
!!! ATTGAAAGTAAATTTTGATT+GGG + chr1.1:7737175-7737194 None:intergenic 15.0%
!!! TTACAATTTTTTTTACTATC+TGG - chr1.1:7737474-7737493 MS.gene016051:CDS 15.0%
!! AAAAGTTGCTCAAAAATTAT+GGG - chr1.1:7737571-7737590 MS.gene016051:intron 20.0%
!! GAAAATGGAATATATTGAAT+TGG + chr1.1:7740359-7740378 None:intergenic 20.0%
!! TAAAAAAATTCTTACTAGAG+AGG - chr1.1:7739334-7739353 MS.gene016051:CDS 20.0%
!! TAATAAAACCAAAACAAAAG+TGG + chr1.1:7738959-7738978 None:intergenic 20.0%
!! TAATATGTAACAATTGCATT+CGG + chr1.1:7738680-7738699 None:intergenic 20.0%
!! TACCAAATGTATTATGAATA+GGG - chr1.1:7738758-7738777 MS.gene016051:CDS 20.0%
!! TAGGAAGAAAAAAAATTCAA+AGG - chr1.1:7740877-7740896 MS.gene016051:intron 20.0%
!! TTTCATATCTATTCTTAACA+AGG + chr1.1:7741005-7741024 None:intergenic 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr1.1:7740248-7740267 None:intergenic 20.0%
!!! GATTGAAAGTAAATTTTGAT+TGG + chr1.1:7737176-7737195 None:intergenic 20.0%
!!! TGTTGCTGATTTTTTTTTAA+AGG - chr1.1:7737449-7737468 MS.gene016051:CDS 20.0%
! AAAGAAAATCAAGGATAAAG+TGG - chr1.1:7739803-7739822 MS.gene016051:intron 25.0%
! AATATGTTCATAAATCTGCA+TGG + chr1.1:7741028-7741047 None:intergenic 25.0%
! AGATTAACAGGATAGTTAAA+AGG + chr1.1:7738441-7738460 None:intergenic 25.0%
! ATATAATATGTCATGTACCT+TGG + chr1.1:7737133-7737152 None:intergenic 25.0%
! ATATTTGCAGAGATTATAGA+TGG - chr1.1:7737005-7737024 MS.gene016051:CDS 25.0%
! CAAAAGTTGCTCAAAAATTA+TGG - chr1.1:7737570-7737589 MS.gene016051:intron 25.0%
! CATACTTGTAAAGAAAATCA+AGG - chr1.1:7739794-7739813 MS.gene016051:intron 25.0%
! GTACCAAATGTATTATGAAT+AGG - chr1.1:7738757-7738776 MS.gene016051:CDS 25.0%
! GTTATGAAATCAAGAAAATG+TGG + chr1.1:7739655-7739674 None:intergenic 25.0%
! TAAGGTAATATTCACTTCTT+CGG - chr1.1:7738912-7738931 MS.gene016051:intron 25.0%
! TACCATCATTATTATCTACT+CGG - chr1.1:7739587-7739606 MS.gene016051:intron 25.0%
! TAGACTTATTGATCAAATAG+TGG + chr1.1:7737268-7737287 None:intergenic 25.0%
! TGTATAAATAAAGGGGAAAA+TGG + chr1.1:7740374-7740393 None:intergenic 25.0%
! TTGATCAATAAGTCTAACTA+TGG - chr1.1:7737272-7737291 MS.gene016051:intron 25.0%
! TTTCAATATTCTTGATGTTG+CGG - chr1.1:7737961-7737980 MS.gene016051:intron 25.0%
! TTTCAATCTTTACTCTTTAC+CGG - chr1.1:7737188-7737207 MS.gene016051:intron 25.0%
!! AACATGATATCAATTAGTCT+TGG + chr1.1:7737358-7737377 None:intergenic 25.0%
!! AACGGCATTAATATTTTTCA+GGG - chr1.1:7740600-7740619 MS.gene016051:CDS 25.0%
!! ATATTCCTTAAGTTGTTCTT+AGG - chr1.1:7740858-7740877 MS.gene016051:intron 25.0%
!! ATTTTCTTTTGATATGTCAG+TGG - chr1.1:7739720-7739739 MS.gene016051:CDS 25.0%
!! CATCAATATTTTGTATTCGA+TGG - chr1.1:7737904-7737923 MS.gene016051:intron 25.0%
!! GTCTTTTGTTAGCAATTTTA+CGG - chr1.1:7739082-7739101 MS.gene016051:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr1.1:7740271-7740290 None:intergenic 25.0%
!! TTTTGTAAGTTTGATACACT+CGG - chr1.1:7739174-7739193 MS.gene016051:intron 25.0%
!!! ATTATTGTCCACTTTTGTTT+TGG - chr1.1:7738948-7738967 MS.gene016051:intron 25.0%
!!! ATTTTATTTTGCATGACACA+GGG - chr1.1:7740645-7740664 MS.gene016051:CDS 25.0%
!!! ATTTTTTGTTTTGGAGAGAA+TGG + chr1.1:7740517-7740536 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr1.1:7740249-7740268 None:intergenic 25.0%
!!! TATTTTATTTTGCATGACAC+AGG - chr1.1:7740644-7740663 MS.gene016051:CDS 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr1.1:7740270-7740289 None:intergenic 25.0%
!!! TTCGAAGGTATGAAATTTTA+TGG + chr1.1:7740818-7740837 None:intergenic 25.0%
AAAACAATTAGCACCATCAT+AGG - chr1.1:7740168-7740187 MS.gene016051:intron 30.0%
AATATCAAAGAAGTCTGCAA+TGG - chr1.1:7739437-7739456 MS.gene016051:intron 30.0%
ACATTAATCCTTAGTTTCAC+TGG - chr1.1:7739396-7739415 MS.gene016051:CDS 30.0%
ACCAACAAAAGACAAATATG+AGG - chr1.1:7739146-7739165 MS.gene016051:intron 30.0%
ACCATCATTATTATCTACTC+GGG - chr1.1:7739588-7739607 MS.gene016051:intron 30.0%
ACGGAATTTATTCTGATAAC+AGG + chr1.1:7740053-7740072 None:intergenic 30.0%
ATAACTATGTAAGAACAGAC+AGG + chr1.1:7738338-7738357 None:intergenic 30.0%
ATATGTAGGTTGTTAGATCA+GGG - chr1.1:7738187-7738206 MS.gene016051:CDS 30.0%
CAAAATTGCTTGCATTACAA+TGG + chr1.1:7740091-7740110 None:intergenic 30.0%
CACCCTATTCATAATACATT+TGG + chr1.1:7738763-7738782 None:intergenic 30.0%
CCAAATCTAAGAAACAATAG+AGG + chr1.1:7738091-7738110 None:intergenic 30.0%
CTATGAATAGTTGTATACCT+GGG + chr1.1:7738526-7738545 None:intergenic 30.0%
GAAAATATTGCACCTGAAAA+GGG + chr1.1:7740776-7740795 None:intergenic 30.0%
GTAGCTGCAATTTAATATCT+TGG + chr1.1:7740953-7740972 None:intergenic 30.0%
TAAATACTGTCTCACTTCAA+AGG - chr1.1:7738302-7738321 MS.gene016051:CDS 30.0%
TAAATATGTTCACGACGTAA+AGG + chr1.1:7738045-7738064 None:intergenic 30.0%
TAATTAGGATTGAAGTTCGA+AGG + chr1.1:7740833-7740852 None:intergenic 30.0%
TATATGTAGGTTGTTAGATC+AGG - chr1.1:7738186-7738205 MS.gene016051:CDS 30.0%
TATGGTACATTGCTTTCATA+TGG - chr1.1:7738799-7738818 MS.gene016051:intron 30.0%
TCACTTGTGCATTATAGAAT+TGG + chr1.1:7737214-7737233 None:intergenic 30.0%
TCTATGAATAGTTGTATACC+TGG + chr1.1:7738527-7738546 None:intergenic 30.0%
TGTGTGAGTTATTGATCTAA+TGG - chr1.1:7737309-7737328 MS.gene016051:intron 30.0%
TTAACAGGATAGTTAAAAGG+CGG + chr1.1:7738438-7738457 None:intergenic 30.0%
TTCTTCCTAAGAACAACTTA+AGG + chr1.1:7740866-7740885 None:intergenic 30.0%
TTTGTAAGTTTGATACACTC+GGG - chr1.1:7739175-7739194 MS.gene016051:intron 30.0%
! ACCTCATATTTGTCTTTTGT+TGG + chr1.1:7739150-7739169 None:intergenic 30.0%
! ATTTTGCCAAGAATACAGAA+GGG - chr1.1:7739941-7739960 MS.gene016051:CDS 30.0%
! CATTGTAATGCAAGCAATTT+TGG - chr1.1:7740089-7740108 MS.gene016051:intron 30.0%
! CCTCTATTGTTTCTTAGATT+TGG - chr1.1:7738088-7738107 MS.gene016051:intron 30.0%
! GAACGGCATTAATATTTTTC+AGG - chr1.1:7740599-7740618 MS.gene016051:CDS 30.0%
! GCTACGACTTTTATATATGT+AGG - chr1.1:7738173-7738192 MS.gene016051:CDS 30.0%
! TTCAGAGTAAACCATCATTT+TGG - chr1.1:7738987-7739006 MS.gene016051:intron 30.0%
! TTTGAAACAGCTAGATTAAC+AGG + chr1.1:7738453-7738472 None:intergenic 30.0%
!! TATTTAGTTCTTTCATTGCC+TGG + chr1.1:7738288-7738307 None:intergenic 30.0%
!!! AAGTAAATTTTGATTGGGTG+AGG + chr1.1:7737170-7737189 None:intergenic 30.0%
!!! AGTAAATTTTGATTGGGTGA+GGG + chr1.1:7737169-7737188 None:intergenic 30.0%
!!! TGCACAAGGTTTTGAAATTT+CGG - chr1.1:7737935-7737954 MS.gene016051:intron 30.0%
!!! TGTACAAGCTGTTTTTCATT+TGG + chr1.1:7737519-7737538 None:intergenic 30.0%
!!! TTTTATTTTGCATGACACAG+GGG - chr1.1:7740646-7740665 MS.gene016051:CDS 30.0%
AAAATCCATTTCAAGGTCCA+AGG - chr1.1:7737113-7737132 MS.gene016051:intron 35.0%
ACACAGCTTATAAGACCTTT+GGG + chr1.1:7738833-7738852 None:intergenic 35.0%
ACCCGAGTAGATAATAATGA+TGG + chr1.1:7739592-7739611 None:intergenic 35.0%
ACTTTCTTACAATGCATCCA+GGG - chr1.1:7738879-7738898 MS.gene016051:intron 35.0%
AGAATAAATTCCGTCGAAGA+AGG - chr1.1:7740059-7740078 MS.gene016051:intron 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr1.1:7740235-7740254 None:intergenic 35.0%
ATAATGTTCGTTCCGATATG+AGG - chr1.1:7739994-7740013 MS.gene016051:CDS 35.0%
ATACTTTGGCAGTTTAGACA+TGG + chr1.1:7741082-7741101 None:intergenic 35.0%
ATATCATGGGAAGAACCATT+TGG - chr1.1:7740017-7740036 MS.gene016051:intron 35.0%
ATGAAAAACAGCTTGTACAC+AGG - chr1.1:7737520-7737539 MS.gene016051:CDS 35.0%
ATTCTGATAACAGGCAAAAC+CGG + chr1.1:7740044-7740063 None:intergenic 35.0%
CAAACTAGCTCATATATTCC+GGG - chr1.1:7740418-7740437 MS.gene016051:intron 35.0%
CACCAGAAAAATCCATTTCA+AGG - chr1.1:7737106-7737125 MS.gene016051:intron 35.0%
CCAAACTAGCTCATATATTC+CGG - chr1.1:7740417-7740436 MS.gene016051:intron 35.0%
CCAACACCTTCTTATACAAT+GGG - chr1.1:7741201-7741220 MS.gene016051:CDS 35.0%
CCTCTGCTAACTTTATTGAA+GGG - chr1.1:7739886-7739905 MS.gene016051:intron 35.0%
CGAACATTATCCAACAAAAG+TGG + chr1.1:7739984-7740003 None:intergenic 35.0%
CGTGAACATATTTACAGTTG+CGG - chr1.1:7738051-7738070 MS.gene016051:intron 35.0%
CTTGATGTTGCGGAAAATTA+TGG - chr1.1:7737971-7737990 MS.gene016051:intron 35.0%
CTTTCAACTACTATGCAGAT+GGG - chr1.1:7737033-7737052 MS.gene016051:CDS 35.0%
GCTGCAATTTAATATCTTGG+TGG + chr1.1:7740950-7740969 None:intergenic 35.0%
GGAAAATATTGCACCTGAAA+AGG + chr1.1:7740777-7740796 None:intergenic 35.0%
GGTCATCATGTTAATACTGT+TGG + chr1.1:7741154-7741173 None:intergenic 35.0%
TAACAGGATAGTTAAAAGGC+GGG + chr1.1:7738437-7738456 None:intergenic 35.0%
TAATCCTTAGTTTCACTGGT+GGG - chr1.1:7739400-7739419 MS.gene016051:CDS 35.0%
TAGTTACAACTTCCAACAAG+AGG - chr1.1:7739246-7739265 MS.gene016051:intron 35.0%
TATGTAGGTTGTTAGATCAG+GGG - chr1.1:7738188-7738207 MS.gene016051:CDS 35.0%
TCCTCTGCTAACTTTATTGA+AGG - chr1.1:7739885-7739904 MS.gene016051:intron 35.0%
TGCTAACTTTATTGAAGGGT+TGG - chr1.1:7739890-7739909 MS.gene016051:intron 35.0%
TTAACAAGACACTCAGCAAT+AGG + chr1.1:7737668-7737687 None:intergenic 35.0%
TTAATCCTTAGTTTCACTGG+TGG - chr1.1:7739399-7739418 MS.gene016051:CDS 35.0%
TTAGCACCATCATAGGAAAA+AGG - chr1.1:7740175-7740194 MS.gene016051:intron 35.0%
TTCCCATGATATCCTCATAT+CGG + chr1.1:7740009-7740028 None:intergenic 35.0%
TTCCGATATGAGGATATCAT+GGG - chr1.1:7740004-7740023 MS.gene016051:intron 35.0%
TTGTAAGTTTGATACACTCG+GGG - chr1.1:7739176-7739195 MS.gene016051:intron 35.0%
TTGTGCATTATAGAATTGGC+CGG + chr1.1:7737210-7737229 None:intergenic 35.0%
TTTATGGCAACTTAGCAAGA+TGG + chr1.1:7740802-7740821 None:intergenic 35.0%
! AATGTTGATAAGCGATGCAA+TGG - chr1.1:7740698-7740717 MS.gene016051:intron 35.0%
! AGTAAAGGTTGCTTTAGTCA+TGG - chr1.1:7739758-7739777 MS.gene016051:CDS 35.0%
! CATTTTGCCAAGAATACAGA+AGG - chr1.1:7739940-7739959 MS.gene016051:CDS 35.0%
! GATAGGAACAAATTTTCCAG+AGG + chr1.1:7737075-7737094 None:intergenic 35.0%
! GATTACTGTGGTCTTAATCT+TGG + chr1.1:7741175-7741194 None:intergenic 35.0%
! TATTGCTGAGTGTCTTGTTA+AGG - chr1.1:7737667-7737686 MS.gene016051:intron 35.0%
!! AAATGGATTTTTCTGGTGGT+TGG + chr1.1:7737104-7737123 None:intergenic 35.0%
!! CATTTTAGGGACCAAAATGA+TGG + chr1.1:7739001-7739020 None:intergenic 35.0%
!! CCAAAGTATGATTTGTTGCA+GGG - chr1.1:7741093-7741112 MS.gene016051:CDS 35.0%
!! CTTGAAATGGATTTTTCTGG+TGG + chr1.1:7737108-7737127 None:intergenic 35.0%
!! CTTTATTGAAGGGTTGGTAA+TGG - chr1.1:7739896-7739915 MS.gene016051:CDS 35.0%
!! GACCTTGAAATGGATTTTTC+TGG + chr1.1:7737111-7737130 None:intergenic 35.0%
!! GTAATGGATGCTAAGAAGAA+AGG - chr1.1:7739912-7739931 MS.gene016051:CDS 35.0%
!!! AGCAACTTTTGCTGATTCTA+TGG + chr1.1:7737561-7737580 None:intergenic 35.0%
!!! TTTTAGTTCTTGAGTGTGTG+AGG + chr1.1:7739217-7739236 None:intergenic 35.0%
AAAGTGGCCAAACTAACTGT+CGG - chr1.1:7739819-7739838 MS.gene016051:intron 40.0%
AATCCTTAGTTTCACTGGTG+GGG - chr1.1:7739401-7739420 MS.gene016051:CDS 40.0%
ATAAGCTGTGTGACAGGAAA+GGG - chr1.1:7738842-7738861 MS.gene016051:intron 40.0%
ATGTACCTTGGACCTTGAAA+TGG + chr1.1:7737121-7737140 None:intergenic 40.0%
CACACAGCTTATAAGACCTT+TGG + chr1.1:7738834-7738853 None:intergenic 40.0%
CACAGCTTATAAGACCTTTG+GGG + chr1.1:7738832-7738851 None:intergenic 40.0%
CAGCTACATACTTACAGTCA+TGG - chr1.1:7740966-7740985 MS.gene016051:intron 40.0%
CCCTGCAACAAATCATACTT+TGG + chr1.1:7741096-7741115 None:intergenic 40.0%
CCCTTCAATAAAGTTAGCAG+AGG + chr1.1:7739889-7739908 None:intergenic 40.0%
CCGGAATATATGAGCTAGTT+TGG + chr1.1:7740420-7740439 None:intergenic 40.0%
CTGCTAACATTGTGAAAGGA+GGG - chr1.1:7739532-7739551 MS.gene016051:intron 40.0%
CTTTCTTACAATGCATCCAG+GGG - chr1.1:7738880-7738899 MS.gene016051:intron 40.0%
GAAGGGAAGGAAATCTCATA+TGG - chr1.1:7739958-7739977 MS.gene016051:CDS 40.0%
GAATAGTTGTATACCTGGGT+TGG + chr1.1:7738522-7738541 None:intergenic 40.0%
GACACTCATACTATACCTGA+AGG + chr1.1:7740115-7740134 None:intergenic 40.0%
GACTTTCTTACAATGCATCC+AGG - chr1.1:7738878-7738897 MS.gene016051:intron 40.0%
GAGGAAGGAGTTAGAATTCT+CGG - chr1.1:7738231-7738250 MS.gene016051:CDS 40.0%
GCCAACACCTTCTTATACAA+TGG - chr1.1:7741200-7741219 MS.gene016051:CDS 40.0%
GCTAACAAAAGACACACTCA+AGG + chr1.1:7739075-7739094 None:intergenic 40.0%
GCTTTCAACTACTATGCAGA+TGG - chr1.1:7737032-7737051 MS.gene016051:CDS 40.0%
GTACATTGCTTTCATATGGC+TGG - chr1.1:7738803-7738822 MS.gene016051:intron 40.0%
GTAGCTGCTAACATTGTGAA+AGG - chr1.1:7739528-7739547 MS.gene016051:intron 40.0%
GTTCCGATATGAGGATATCA+TGG - chr1.1:7740003-7740022 MS.gene016051:CDS 40.0%
TATAAGCTGTGTGACAGGAA+AGG - chr1.1:7738841-7738860 MS.gene016051:intron 40.0%
TCAAAGATGCACAGCAGTAA+AGG - chr1.1:7739743-7739762 MS.gene016051:CDS 40.0%
TGCAATGGTTCCTCTTCAAA+TGG - chr1.1:7739452-7739471 MS.gene016051:intron 40.0%
TTCCTTCCCTTCTGTATTCT+TGG + chr1.1:7739950-7739969 None:intergenic 40.0%
TTGATTGGGTGAGGGAAAAA+GGG + chr1.1:7737161-7737180 None:intergenic 40.0%
TTTGATTGGGTGAGGGAAAA+AGG + chr1.1:7737162-7737181 None:intergenic 40.0%
TTTGGTCCCTAAAATGTGTG+AGG - chr1.1:7739005-7739024 MS.gene016051:intron 40.0%
! AACTCTGCTCTTTTCCAAAG+TGG + chr1.1:7737605-7737624 None:intergenic 40.0%
! ACACTGCCTCACACATTTTA+GGG + chr1.1:7739014-7739033 None:intergenic 40.0%
! AGGAACAAATTTTCCAGAGG+AGG + chr1.1:7737072-7737091 None:intergenic 40.0%
! CCCATTGTATAAGAAGGTGT+TGG + chr1.1:7741204-7741223 None:intergenic 40.0%
! GGTTGCTTTAGTCATGGAAT+CGG - chr1.1:7739764-7739783 MS.gene016051:CDS 40.0%
! GTGCATCCTTTTTCCTATGA+TGG + chr1.1:7740184-7740203 None:intergenic 40.0%
! TATGGGCTAAAACTCCACTT+TGG - chr1.1:7737588-7737607 MS.gene016051:intron 40.0%
! TATGTGCTACTGTTACCTGT+AGG + chr1.1:7739562-7739581 None:intergenic 40.0%
! TGTTCTTGAAGATGCTGACT+TGG - chr1.1:7739500-7739519 MS.gene016051:intron 40.0%
!! GATAGTGGAATTGGTTCTCA+AGG - chr1.1:7741123-7741142 MS.gene016051:CDS 40.0%
!! GCCAAAGTATGATTTGTTGC+AGG - chr1.1:7741092-7741111 MS.gene016051:CDS 40.0%
!! GGTTTGAAGGATAGTGGAAT+TGG - chr1.1:7741114-7741133 MS.gene016051:CDS 40.0%
!! TGAAGATGCTGACTTGGATT+TGG - chr1.1:7739506-7739525 MS.gene016051:intron 40.0%
!! TGATTTGTTGCAGGGTTTGA+AGG - chr1.1:7741101-7741120 MS.gene016051:CDS 40.0%
!! TGTTGGCAAGTTGATTACTG+TGG + chr1.1:7741187-7741206 None:intergenic 40.0%
!! TTTGGTGTCATATTGTGCAG+AGG - chr1.1:7738212-7738231 MS.gene016051:CDS 40.0%
!!! TCTCATATGGCCACTTTTGT+TGG - chr1.1:7739971-7739990 MS.gene016051:CDS 40.0%
AACAGCTTGTACACAGGAAG+AGG - chr1.1:7737526-7737545 MS.gene016051:CDS 45.0%
AAGAGCAGAGTTGCTTCACA+AGG - chr1.1:7737613-7737632 MS.gene016051:intron 45.0%
AAGTGGAACAAATCCTCCTC+TGG - chr1.1:7737056-7737075 MS.gene016051:CDS 45.0%
ACCTGAAAAGGGAAGTGATC+AGG + chr1.1:7740765-7740784 None:intergenic 45.0%
ACTACTATGCAGATGGGAAG+TGG - chr1.1:7737039-7737058 MS.gene016051:CDS 45.0%
AGGATAGTTAAAAGGCGGGA+TGG + chr1.1:7738433-7738452 None:intergenic 45.0%
AGTGGAAATAAGCTTGTGCG+CGG + chr1.1:7737250-7737269 None:intergenic 45.0%
ATAAGCGATGCAATGGAGAC+AGG - chr1.1:7740705-7740724 MS.gene016051:intron 45.0%
ATCTTGCTTGAGCCTCTTGT+TGG + chr1.1:7739261-7739280 None:intergenic 45.0%
ATGGCAACTTAGCAAGATGG+AGG + chr1.1:7740799-7740818 None:intergenic 45.0%
ATGGCGAATTCCTTCTTCGA+CGG + chr1.1:7740072-7740091 None:intergenic 45.0%
ATGGCTAAAACAACTCCGAG+TGG + chr1.1:7738414-7738433 None:intergenic 45.0%
ATGGGAAGAACCATTTGGAC+CGG - chr1.1:7740022-7740041 MS.gene016051:intron 45.0%
ATGGGTCAGATATTCCGGTA+CGG + chr1.1:7740230-7740249 None:intergenic 45.0%
ATTGCTCCAGCTCTTATTGC+TGG - chr1.1:7738474-7738493 MS.gene016051:intron 45.0%
CAAGGCTGCAGCAATATTGA+AGG - chr1.1:7737631-7737650 MS.gene016051:intron 45.0%
CTAGCTCATATATTCCGGGA+CGG - chr1.1:7740422-7740441 MS.gene016051:intron 45.0%
GAGTTTCCAGCAATAAGAGC+TGG + chr1.1:7738483-7738502 None:intergenic 45.0%
GCTGCTAACATTGTGAAAGG+AGG - chr1.1:7739531-7739550 MS.gene016051:intron 45.0%
GGAGTTAGAATTCTCGGAGA+AGG - chr1.1:7738237-7738256 MS.gene016051:CDS 45.0%
GGTTGTTAGATCAGGGGATT+TGG - chr1.1:7738194-7738213 MS.gene016051:CDS 45.0%
GTGTCATATTGTGCAGAGGA+AGG - chr1.1:7738216-7738235 MS.gene016051:CDS 45.0%
GTTCCTCTTCAAATGGAGCT+TGG - chr1.1:7739459-7739478 MS.gene016051:intron 45.0%
TACTTCAGTGACAGCATCCT+TGG + chr1.1:7737708-7737727 None:intergenic 45.0%
TAGTTCTTGAGTGTGTGAGG+CGG + chr1.1:7739214-7739233 None:intergenic 45.0%
TCACTGCATTCTCTGTCGAA+CGG - chr1.1:7740582-7740601 MS.gene016051:CDS 45.0%
TCTCGGAGAAGGAAAGTTTC+TGG - chr1.1:7738248-7738267 MS.gene016051:CDS 45.0%
TGCCAAGAATACAGAAGGGA+AGG - chr1.1:7739945-7739964 MS.gene016051:CDS 45.0%
TGCTGTAGCTGCACTACATA+TGG - chr1.1:7738781-7738800 MS.gene016051:CDS 45.0%
TGGCAACTTAGCAAGATGGA+GGG + chr1.1:7740798-7740817 None:intergenic 45.0%
TTGCAGGGTTTGAAGGATAG+TGG - chr1.1:7741108-7741127 MS.gene016051:CDS 45.0%
TTGTGTGTGCAGATTCCACT+CGG - chr1.1:7738396-7738415 MS.gene016051:CDS 45.0%
! ACCTGATCACTTCCCTTTTC+AGG - chr1.1:7740761-7740780 MS.gene016051:intron 45.0%
! CTGGTCTCTGATAGTTTTCC+AGG - chr1.1:7738267-7738286 MS.gene016051:CDS 45.0%
! CTGGTGGTTGGATTGATGAT+AGG + chr1.1:7737092-7737111 None:intergenic 45.0%
! GACACTGCCTCACACATTTT+AGG + chr1.1:7739015-7739034 None:intergenic 45.0%
! GGTCTTATAAGCTGTGTGAC+AGG - chr1.1:7738836-7738855 MS.gene016051:intron 45.0%
! TAGTTGTATACCTGGGTTGG+TGG + chr1.1:7738519-7738538 None:intergenic 45.0%
!! ACAGGAAAGGGTTCTGAGAT+TGG - chr1.1:7738854-7738873 MS.gene016051:intron 45.0%
!! ATACCTGGGTTGGTGGTTTA+AGG + chr1.1:7738512-7738531 None:intergenic 45.0%
!! GGTTGGTGGTTTAAGGACAA+TGG + chr1.1:7738505-7738524 None:intergenic 45.0%
!! TGCAAGCAATTTTGGCCTTC+AGG - chr1.1:7740097-7740116 MS.gene016051:intron 45.0%
ACAGGCAAAACCGGTCCAAA+TGG + chr1.1:7740035-7740054 None:intergenic 50.0%
AGGAGGACCGACAGTTAGTT+TGG + chr1.1:7739829-7739848 None:intergenic 50.0%
ATAGAATACTCCCTCCGTCC+CGG + chr1.1:7740439-7740458 None:intergenic 50.0%
ATCAATTCAGCACCAGCTCG+CGG - chr1.1:7740738-7740757 MS.gene016051:intron 50.0%
ATCCAGGGGTGAACTGCATA+AGG - chr1.1:7738894-7738913 MS.gene016051:intron 50.0%
CCACCAAGCTCCATTTGAAG+AGG + chr1.1:7739465-7739484 None:intergenic 50.0%
CCTCTTCAAATGGAGCTTGG+TGG - chr1.1:7739462-7739481 MS.gene016051:intron 50.0%
CGATGGCTATGTTGTGCACA+AGG - chr1.1:7737921-7737940 MS.gene016051:intron 50.0%
CTCATATATTCCGGGACGGA+GGG - chr1.1:7740426-7740445 MS.gene016051:intron 50.0%
CTCTAATACTCCCTCCGTAC+CGG - chr1.1:7740213-7740232 MS.gene016051:intron 50.0%
GCAGAGGATTCTGTGATGAC+CGG + chr1.1:7739873-7739892 None:intergenic 50.0%
GGAGATTGCAAAACCAGCCA+AGG - chr1.1:7737688-7737707 MS.gene016051:intron 50.0%
GTCAGATATTCCGGTACGGA+GGG + chr1.1:7740226-7740245 None:intergenic 50.0%
TACCTTATGCAGTTCACCCC+TGG + chr1.1:7738899-7738918 None:intergenic 50.0%
TGAAAGGAGGGTTCTCCTAC+AGG - chr1.1:7739544-7739563 MS.gene016051:intron 50.0%
TGTCCCCACCAGTGAAACTA+AGG + chr1.1:7739407-7739426 None:intergenic 50.0%
TGTCCTTAAACCACCAACCC+AGG - chr1.1:7738506-7738525 MS.gene016051:intron 50.0%
ACTAACTGTCGGTCCTCCTG+AGG - chr1.1:7739830-7739849 MS.gene016051:intron 55.0%
AGTTTCACTGGTGGGGACAC+TGG - chr1.1:7739408-7739427 MS.gene016051:CDS 55.0%
ATGTCGCAGTCATCCTCAGG+AGG + chr1.1:7739846-7739865 None:intergenic 55.0%
ATGTCTGTGCGAGCGCATTG+TGG + chr1.1:7738016-7738035 None:intergenic 55.0%
GCTCATATATTCCGGGACGG+AGG - chr1.1:7740425-7740444 MS.gene016051:intron 55.0%
GGATGACTGCGACATCACAC+CGG - chr1.1:7739851-7739870 MS.gene016051:intron 55.0%
GGTCAGATATTCCGGTACGG+AGG + chr1.1:7740227-7740246 None:intergenic 55.0%
GTGATGTCGCAGTCATCCTC+AGG + chr1.1:7739849-7739868 None:intergenic 55.0%
TCAGTGACAGCATCCTTGGC+TGG + chr1.1:7737704-7737723 None:intergenic 55.0%
!! CATATGGCTGGCTTCCCCAA+AGG - chr1.1:7738815-7738834 MS.gene016051:intron 55.0%
AAGTGATCAGGTCCGCGAGC+TGG + chr1.1:7740753-7740772 None:intergenic 60.0%
GCGCATTGTGGCTGCATCGT+CGG + chr1.1:7738004-7738023 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7736990 7741227 7736990 ID=MS.gene016051
chr1.1 mRNA 7736990 7741227 7736990 ID=MS.gene016051.t1;Parent=MS.gene016051
chr1.1 exon 7741083 7741227 7741083 ID=MS.gene016051.t1.exon1;Parent=MS.gene016051.t1
chr1.1 CDS 7741083 7741227 7741083 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7740493 7740686 7740493 ID=MS.gene016051.t1.exon2;Parent=MS.gene016051.t1
chr1.1 CDS 7740493 7740686 7740493 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7739894 7740022 7739894 ID=MS.gene016051.t1.exon3;Parent=MS.gene016051.t1
chr1.1 CDS 7739894 7740022 7739894 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7739690 7739809 7739690 ID=MS.gene016051.t1.exon4;Parent=MS.gene016051.t1
chr1.1 CDS 7739690 7739809 7739690 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7739302 7739438 7739302 ID=MS.gene016051.t1.exon5;Parent=MS.gene016051.t1
chr1.1 CDS 7739302 7739438 7739302 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7738652 7738807 7738652 ID=MS.gene016051.t1.exon6;Parent=MS.gene016051.t1
chr1.1 CDS 7738652 7738807 7738652 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7738099 7738477 7738099 ID=MS.gene016051.t1.exon7;Parent=MS.gene016051.t1
chr1.1 CDS 7738099 7738477 7738099 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7737435 7737551 7737435 ID=MS.gene016051.t1.exon8;Parent=MS.gene016051.t1
chr1.1 CDS 7737435 7737551 7737435 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1 exon 7736990 7737103 7736990 ID=MS.gene016051.t1.exon9;Parent=MS.gene016051.t1
chr1.1 CDS 7736990 7737103 7736990 ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
Gene Sequence

>MS.gene016051

ATGGCAGGGAGTGGAATATTTGCAGAGATTATAGATGGTGATGCTTTCAACTACTATGCAGATGGGAAGTGGAACAAATCCTCCTCTGGAAAATTTGTTCCTATCATCAATCCAACCACCAGAAAAATCCATTTCAAGGTCCAAGGTACATGACATATTATATATTTACCCTTTTTCCCTCACCCAATCAAAATTTACTTTCAATCTTTACTCTTTACCGGCCAATTCTATAATGCACAAGTGAGATAAATCTTACACCGCGCACAAGCTTATTTCCACTATTTGATCAATAAGTCTAACTATGGATCAAAAGTGATATTGTGTGAGTTATTGATCTAATGGTCGAAAATATATTTGTGCACGCTCCAAGACTAATTGATATCATGTTCAAAATTAAATACATATCTTGATTTTACTGTTTTCTTGATGTAATTCAAAAATAATATATATCATGGTTAATGTTGCTGATTTTTTTTTAAAGGTGTTACAATTTTTTTTACTATCTGGAATATTAATTCTTTTTAATCCAAATGAAAAACAGCTTGTACACAGGAAGAGGTTAACAAAGCCATAGAATCAGCAAAAGTTGCTCAAAAATTATGGGCTAAAACTCCACTTTGGAAAAGAGCAGAGTTGCTTCACAAGGCTGCAGCAATATTGAAGGAACACAAAGCACCTATTGCTGAGTGTCTTGTTAAGGAGATTGCAAAACCAGCCAAGGATGCTGTCACTGAAGTATGTATAAACAGTTTAACTTTTCATTTATTTAATGGTTGTAAAGTTTTTTTTTTCTCTTTCATGCTTTATTTTTATTGTTAAAAGAATACATGTTAGTGACAATTTATAATTTGTTGTGTTCGGTTATTGAGTAGCAATGAAGTGTAACAATAAATTACAGAATCACATTAGACATACATCAATATTTTGTATTCGATGGCTATGTTGTGCACAAGGTTTTGAAATTTCGGTTGTTTCAATATTCTTGATGTTGCGGAAAATTATGGTCAAATACCGACGATGCAGCCACAATGCGCTCGCACAGACATAAAAAACCTTTACGTCGTGAACATATTTACAGTTGCGGACAGTTGTTTAAAACCTCTATTGTTTCTTAGATTTGGTCATTTGAGTCTTCAATTATGACTATTATATTTGTCAACTGCTGTGTAACATGTAAATAAATGCTACGACTTTTATATATGTAGGTTGTTAGATCAGGGGATTTGGTGTCATATTGTGCAGAGGAAGGAGTTAGAATTCTCGGAGAAGGAAAGTTTCTGGTCTCTGATAGTTTTCCAGGCAATGAAAGAACTAAATACTGTCTCACTTCAAAGGTATTGATTGACCTGTCTGTTCTTACATAGTTATTTAACTAAACTAGTTTTTTTTTTTCTTTCTCACAAATTTTGTGTGTGCAGATTCCACTCGGAGTTGTTTTAGCCATCCCGCCTTTTAACTATCCTGTTAATCTAGCTGTTTCAAAGATTGCTCCAGCTCTTATTGCTGGAAACTCCATTGTCCTTAAACCACCAACCCAGGTATACAACTATTCATAGACCATATACATCATAATAACTATAGTTGTAGAAAGTACTTTGATATATTTCAAAGTAGTGAATAGAGTGAAGAGCGCAGATGCAAATACGTTTATATATATTATTCTAATCTAACTAATCTAATTAATGGACCGAATGCAATTGTTACATATTATTACAAAATATACGCTATTTACAACACTATTTTTCGATTATTTAAATAAAATCTAAAGTACCAAATGTATTATGAATAGGGTGCTGTAGCTGCACTACATATGGTACATTGCTTTCATATGGCTGGCTTCCCCAAAGGTCTTATAAGCTGTGTGACAGGAAAGGGTTCTGAGATTGGTGACTTTCTTACAATGCATCCAGGGGTGAACTGCATAAGGTAATATTCACTTCTTCGGCTATCTTGATATCATTATTGTCCACTTTTGTTTTGGTTTTATTATACAAAAATTCAGAGTAAACCATCATTTTGGTCCCTAAAATGTGTGAGGCAGTGTCATTAAAGTCAATGAATGTATTGAAATTAGAAAAATATCCTTGAGTGTGTCTTTTGTTAGCAATTTTACGGACTAGACTGACTAACGAAAGACACGTATGAGAACTAAACTAACCAACAAAAGACAAATATGAGGTATGTTTTTGTAAGTTTGATACACTCGGGGACTATAGTGACACCGCCTCACACACTCAAGAACTAAAATGACAATTGTAGTTACAACTTCCAACAAGAGGCTCAAGCAAGATACAAAACAACATGAAATACTTTGTATACTAAATAACGAATAGAGAAAAATTCTTAAAAAAATTCTTACTAGAGAGGTGTTTTATCATAGCAAGTGAACATTTTTTGATCTAATTCACATTAATCCTTAGTTTCACTGGTGGGGACACTGGAATAGCAATATCAAAGAAGTCTGCAATGGTTCCTCTTCAAATGGAGCTTGGTGGAAAAGATGCTTGCATTGTTCTTGAAGATGCTGACTTGGATTTGGTAGCTGCTAACATTGTGAAAGGAGGGTTCTCCTACAGGTAACAGTAGCACATATATAGTACCATCATTATTATCTACTCGGGTGTCATTTAGATACGCAGACTTGTAGTTTCTCGCAATATTTCCACATTTTCTTGATTTCATAACTTTATTGACGAGAACTGACTTATACATAAAAAATTTCTCATTGAAATTTTCTTTTGATATGTCAGTGGTCAAAGATGCACAGCAGTAAAGGTTGCTTTAGTCATGGAATCGGTTGCTGACATACTTGTAAAGAAAATCAAGGATAAAGTGGCCAAACTAACTGTCGGTCCTCCTGAGGATGACTGCGACATCACACCGGTCATCACAGAATCCTCTGCTAACTTTATTGAAGGGTTGGTAATGGATGCTAAGAAGAAAGGAGCAACATTTTGCCAAGAATACAGAAGGGAAGGAAATCTCATATGGCCACTTTTGTTGGATAATGTTCGTTCCGATATGAGGATATCATGGGAAGAACCATTTGGACCGGTTTTGCCTGTTATCAGAATAAATTCCGTCGAAGAAGGAATTCGCCATTGTAATGCAAGCAATTTTGGCCTTCAGGTATAGTATGAGTGTCAATGCATCACTTGATCAAAATGCATATATTCAAAAAACAATTAGCACCATCATAGGAAAAAGGATGCACTTTATGCTTCTCTAATACTCCCTCCGTACCGGAATATCTGACCCATTTACTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACTCTAATTAATACTACTTTCATCATTCCCAATTCAATATATTCCATTTTCCCCTTTATTTATACATTTTTCTTAATCTGTGTGAAAAACCAAACTAGCTCATATATTCCGGGACGGAGGGAGTATTCTATAATCTATATACATGTAAAAGAAATTGTCACTTATAATCAACTTTTTATTCTAACACCATTCTCTCCAAAACAAAAAATATGATTTTATAAATTACTTTACTTGAGAGTGTCACAACATACTCTTCACTGCATTCTCTGTCGAACGGCATTAATATTTTTCAGGGCACAAAAAATTATATCATTATTATTTTATTTTGCATGACACAGGGGTGCGTGTTTACAAAAGACATAAACAAAGCAATGTTGATAAGCGATGCAATGGAGACAGGAACAGTTCAAATCAATTCAGCACCAGCTCGCGGACCTGATCACTTCCCTTTTCAGGTGCAATATTTTCCCTCCATCTTGCTAAGTTGCCATAAAATTTCATACCTTCGAACTTCAATCCTAATTATATATATATTCCTTAAGTTGTTCTTAGGAAGAAAAAAAATTCAAAGGTTTCTGAAAATTCATATGCAACATAGTTGATCGATATGATAGCTTAACCACCAAGATATTAAATTGCAGCTACATACTTACAGTCATGGTTGCATCTCAAGTCCTTGTTAAGAATAGATATGAAACCATGCAGATTTATGAACATATTTTAGTGAATATCTTTGAATAGTTAATTTTTTCCATGTCTAAACTGCCAAAGTATGATTTGTTGCAGGGTTTGAAGGATAGTGGAATTGGTTCTCAAGGAATCACCAACAGTATTAACATGATGACCAAGATTAAGACCACAGTAATCAACTTGCCAACACCTTCTTATACAATGGGATAA
Protein sequence

>MS.gene016051.t1

MAGSGIFAEIIDGDAFNYYADGKWNKSSSGKFVPIINPTTRKIHFKVQACTQEEVNKAIESAKVAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHMAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKSAMVPLQMELGGKDACIVLEDADLDLVAANIVKGGFSYSGQRCTAVKVALVMESVADILVKKIKDKVAKLTVGPPEDDCDITPVITESSANFIEGLVMDAKKKGATFCQEYRREGNLIWPLLLDNVRSDMRISWEEPFGPVLPVIRINSVEEGIRHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKIKTTVINLPTPSYTMG