AlfalfaGEDB | MS.gene016051

M. sativa cultivar XinJiangDaYe / MS.gene016051

KEGG: K00131
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0055114
PFAM: PF00171.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016051.t1	XP_003588885.1	98.4	496	8	0	1	496	1	496	3.50E-284	986.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016051.t1	P81406	90.3	496	48	0	1	496	1	496	6.2e-266	917.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016051.t1	G7I8A4	98.4	496	8	0	1	496	1	496	2.5e-284	986.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009119	MS.gene016051	PPI
MS.gene013819	MS.gene016051	PPI
MS.gene015742	MS.gene016051	PPI
MS.gene015744	MS.gene016051	PPI
MS.gene016051	MS.gene067409	PPI
MS.gene016051	MS.gene93177	PPI
MS.gene016051	MS.gene042955	PPI
MS.gene016051	MS.gene00160	PPI
MS.gene016051	MS.gene55995	PPI
MS.gene016051	MS.gene057392	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016051.t1	MTR_1g014320	98.387	496	8	0	1	496	1	496	0.0	1008
MS.gene016051.t1	MTR_4g131180	90.121	496	49	0	1	496	1	496	0.0	940
MS.gene016051.t1	MTR_4g131180	89.760	459	47	0	1	459	1	459	0.0	868
MS.gene016051.t1	MTR_2g067660	32.272	471	298	7	22	482	53	512	1.38e-71	236
MS.gene016051.t1	MTR_8g064170	31.762	488	305	10	21	493	66	540	1.41e-60	208
MS.gene016051.t1	MTR_3g078490	33.761	468	285	9	19	469	41	500	2.68e-60	207
MS.gene016051.t1	MTR_3g078550	33.830	470	282	11	19	469	11	470	3.98e-59	203
MS.gene016051.t1	MTR_4g107040	29.817	493	308	10	21	493	69	543	4.20e-55	193
MS.gene016051.t1	MTR_8g083530	28.049	492	320	9	19	494	26	499	2.35e-54	190
MS.gene016051.t1	MTR_3g078170	29.918	488	314	11	21	493	67	541	3.11e-53	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene016051.t1	AT2G24270	86.492	496	67	0	1	496	41	536	0.0	912
MS.gene016051.t1	AT2G24270	86.492	496	67	0	1	496	1	496	0.0	912
MS.gene016051.t1	AT2G24270	86.492	496	67	0	1	496	1	496	0.0	912
MS.gene016051.t1	AT2G24270	86.492	496	67	0	1	496	1	496	0.0	911
MS.gene016051.t1	AT1G74920	35.135	481	281	12	19	477	11	482	4.20e-69	229
MS.gene016051.t1	AT1G74920	34.927	481	277	13	19	477	11	477	1.24e-66	223
MS.gene016051.t1	AT1G79440	31.983	469	302	6	22	482	59	518	4.70e-66	222
MS.gene016051.t1	AT3G48170	31.667	480	299	11	19	477	11	482	2.31e-62	212
MS.gene016051.t1	AT3G48000	30.470	489	310	10	21	493	63	537	1.24e-58	202
MS.gene016051.t1	AT1G23800	30.435	483	316	9	22	493	60	533	3.26e-57	199

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Find 130 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCATTTCAAGGTCCA+AGG	0.568430	1.1:-7741082	MS.gene016051:intron
AAAGAAAATCAAGGATAAAG+TGG	0.530683	1.1:-7738392	MS.gene016051:CDS
AAAGTGGCCAAACTAACTGT+CGG	0.661745	1.1:-7738376	MS.gene016051:CDS
AACAGCTTGTACACAGGAAG+AGG	0.524957	1.1:-7740669	MS.gene016051:intron
AAGAGCAGAGTTGCTTCACA+AGG	0.641127	1.1:-7740582	MS.gene016051:CDS
AAGTGATCAGGTCCGCGAGC+TGG	0.523854	1.1:+7737445	None:intergenic
AAGTGGAACAAATCCTCCTC+TGG	0.487476	1.1:-7741139	MS.gene016051:CDS
AATATCAAAGAAGTCTGCAA+TGG	0.609417	1.1:-7738758	MS.gene016051:CDS
AATCCTTAGTTTCACTGGTG+GGG	0.528272	1.1:-7738794	MS.gene016051:intron
AATGTTGATAAGCGATGCAA+TGG	0.626313	1.1:-7737497	MS.gene016051:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAATTAGCACCATCAT+AGG	-	chr1.1:7740168-7740187	MS.gene016051:intron	30.0%
AATATCAAAGAAGTCTGCAA+TGG	-	chr1.1:7739437-7739456	MS.gene016051:intron	30.0%
ACATTAATCCTTAGTTTCAC+TGG	-	chr1.1:7739396-7739415	MS.gene016051:CDS	30.0%
ACCAACAAAAGACAAATATG+AGG	-	chr1.1:7739146-7739165	MS.gene016051:intron	30.0%
ACCATCATTATTATCTACTC+GGG	-	chr1.1:7739588-7739607	MS.gene016051:intron	30.0%
ACGGAATTTATTCTGATAAC+AGG	+	chr1.1:7740053-7740072	None:intergenic	30.0%
ATAACTATGTAAGAACAGAC+AGG	+	chr1.1:7738338-7738357	None:intergenic	30.0%
ATATGTAGGTTGTTAGATCA+GGG	-	chr1.1:7738187-7738206	MS.gene016051:CDS	30.0%
CAAAATTGCTTGCATTACAA+TGG	+	chr1.1:7740091-7740110	None:intergenic	30.0%
CACCCTATTCATAATACATT+TGG	+	chr1.1:7738763-7738782	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	7736990	7741227	7736990	ID=MS.gene016051
chr1.1	mRNA	7736990	7741227	7736990	ID=MS.gene016051.t1;Parent=MS.gene016051
chr1.1	exon	7741083	7741227	7741083	ID=MS.gene016051.t1.exon1;Parent=MS.gene016051.t1
chr1.1	CDS	7741083	7741227	7741083	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7740493	7740686	7740493	ID=MS.gene016051.t1.exon2;Parent=MS.gene016051.t1
chr1.1	CDS	7740493	7740686	7740493	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7739894	7740022	7739894	ID=MS.gene016051.t1.exon3;Parent=MS.gene016051.t1
chr1.1	CDS	7739894	7740022	7739894	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7739690	7739809	7739690	ID=MS.gene016051.t1.exon4;Parent=MS.gene016051.t1
chr1.1	CDS	7739690	7739809	7739690	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7739302	7739438	7739302	ID=MS.gene016051.t1.exon5;Parent=MS.gene016051.t1
chr1.1	CDS	7739302	7739438	7739302	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7738652	7738807	7738652	ID=MS.gene016051.t1.exon6;Parent=MS.gene016051.t1
chr1.1	CDS	7738652	7738807	7738652	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7738099	7738477	7738099	ID=MS.gene016051.t1.exon7;Parent=MS.gene016051.t1
chr1.1	CDS	7738099	7738477	7738099	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7737435	7737551	7737435	ID=MS.gene016051.t1.exon8;Parent=MS.gene016051.t1
chr1.1	CDS	7737435	7737551	7737435	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1
chr1.1	exon	7736990	7737103	7736990	ID=MS.gene016051.t1.exon9;Parent=MS.gene016051.t1
chr1.1	CDS	7736990	7737103	7736990	ID=cds.MS.gene016051.t1;Parent=MS.gene016051.t1

Gene Sequence

>MS.gene016051

ATGGCAGGGAGTGGAATATTTGCAGAGATTATAGATGGTGATGCTTTCAACTACTATGCAGATGGGAAGTGGAACAAATCCTCCTCTGGAAAATTTGTTCCTATCATCAATCCAACCACCAGAAAAATCCATTTCAAGGTCCAAGGTACATGACATATTATATATTTACCCTTTTTCCCTCACCCAATCAAAATTTACTTTCAATCTTTACTCTTTACCGGCCAATTCTATAATGCACAAGTGAGATAAATCTTACACCGCGCACAAGCTTATTTCCACTATTTGATCAATAAGTCTAACTATGGATCAAAAGTGATATTGTGTGAGTTATTGATCTAATGGTCGAAAATATATTTGTGCACGCTCCAAGACTAATTGATATCATGTTCAAAATTAAATACATATCTTGATTTTACTGTTTTCTTGATGTAATTCAAAAATAATATATATCATGGTTAATGTTGCTGATTTTTTTTTAAAGGTGTTACAATTTTTTTTACTATCTGGAATATTAATTCTTTTTAATCCAAATGAAAAACAGCTTGTACACAGGAAGAGGTTAACAAAGCCATAGAATCAGCAAAAGTTGCTCAAAAATTATGGGCTAAAACTCCACTTTGGAAAAGAGCAGAGTTGCTTCACAAGGCTGCAGCAATATTGAAGGAACACAAAGCACCTATTGCTGAGTGTCTTGTTAAGGAGATTGCAAAACCAGCCAAGGATGCTGTCACTGAAGTATGTATAAACAGTTTAACTTTTCATTTATTTAATGGTTGTAAAGTTTTTTTTTTCTCTTTCATGCTTTATTTTTATTGTTAAAAGAATACATGTTAGTGACAATTTATAATTTGTTGTGTTCGGTTATTGAGTAGCAATGAAGTGTAACAATAAATTACAGAATCACATTAGACATACATCAATATTTTGTATTCGATGGCTATGTTGTGCACAAGGTTTTGAAATTTCGGTTGTTTCAATATTCTTGATGTTGCGGAAAATTATGGTCAAATACCGACGATGCAGCCACAATGCGCTCGCACAGACATAAAAAACCTTTACGTCGTGAACATATTTACAGTTGCGGACAGTTGTTTAAAACCTCTATTGTTTCTTAGATTTGGTCATTTGAGTCTTCAATTATGACTATTATATTTGTCAACTGCTGTGTAACATGTAAATAAATGCTACGACTTTTATATATGTAGGTTGTTAGATCAGGGGATTTGGTGTCATATTGTGCAGAGGAAGGAGTTAGAATTCTCGGAGAAGGAAAGTTTCTGGTCTCTGATAGTTTTCCAGGCAATGAAAGAACTAAATACTGTCTCACTTCAAAGGTATTGATTGACCTGTCTGTTCTTACATAGTTATTTAACTAAACTAGTTTTTTTTTTTCTTTCTCACAAATTTTGTGTGTGCAGATTCCACTCGGAGTTGTTTTAGCCATCCCGCCTTTTAACTATCCTGTTAATCTAGCTGTTTCAAAGATTGCTCCAGCTCTTATTGCTGGAAACTCCATTGTCCTTAAACCACCAACCCAGGTATACAACTATTCATAGACCATATACATCATAATAACTATAGTTGTAGAAAGTACTTTGATATATTTCAAAGTAGTGAATAGAGTGAAGAGCGCAGATGCAAATACGTTTATATATATTATTCTAATCTAACTAATCTAATTAATGGACCGAATGCAATTGTTACATATTATTACAAAATATACGCTATTTACAACACTATTTTTCGATTATTTAAATAAAATCTAAAGTACCAAATGTATTATGAATAGGGTGCTGTAGCTGCACTACATATGGTACATTGCTTTCATATGGCTGGCTTCCCCAAAGGTCTTATAAGCTGTGTGACAGGAAAGGGTTCTGAGATTGGTGACTTTCTTACAATGCATCCAGGGGTGAACTGCATAAGGTAATATTCACTTCTTCGGCTATCTTGATATCATTATTGTCCACTTTTGTTTTGGTTTTATTATACAAAAATTCAGAGTAAACCATCATTTTGGTCCCTAAAATGTGTGAGGCAGTGTCATTAAAGTCAATGAATGTATTGAAATTAGAAAAATATCCTTGAGTGTGTCTTTTGTTAGCAATTTTACGGACTAGACTGACTAACGAAAGACACGTATGAGAACTAAACTAACCAACAAAAGACAAATATGAGGTATGTTTTTGTAAGTTTGATACACTCGGGGACTATAGTGACACCGCCTCACACACTCAAGAACTAAAATGACAATTGTAGTTACAACTTCCAACAAGAGGCTCAAGCAAGATACAAAACAACATGAAATACTTTGTATACTAAATAACGAATAGAGAAAAATTCTTAAAAAAATTCTTACTAGAGAGGTGTTTTATCATAGCAAGTGAACATTTTTTGATCTAATTCACATTAATCCTTAGTTTCACTGGTGGGGACACTGGAATAGCAATATCAAAGAAGTCTGCAATGGTTCCTCTTCAAATGGAGCTTGGTGGAAAAGATGCTTGCATTGTTCTTGAAGATGCTGACTTGGATTTGGTAGCTGCTAACATTGTGAAAGGAGGGTTCTCCTACAGGTAACAGTAGCACATATATAGTACCATCATTATTATCTACTCGGGTGTCATTTAGATACGCAGACTTGTAGTTTCTCGCAATATTTCCACATTTTCTTGATTTCATAACTTTATTGACGAGAACTGACTTATACATAAAAAATTTCTCATTGAAATTTTCTTTTGATATGTCAGTGGTCAAAGATGCACAGCAGTAAAGGTTGCTTTAGTCATGGAATCGGTTGCTGACATACTTGTAAAGAAAATCAAGGATAAAGTGGCCAAACTAACTGTCGGTCCTCCTGAGGATGACTGCGACATCACACCGGTCATCACAGAATCCTCTGCTAACTTTATTGAAGGGTTGGTAATGGATGCTAAGAAGAAAGGAGCAACATTTTGCCAAGAATACAGAAGGGAAGGAAATCTCATATGGCCACTTTTGTTGGATAATGTTCGTTCCGATATGAGGATATCATGGGAAGAACCATTTGGACCGGTTTTGCCTGTTATCAGAATAAATTCCGTCGAAGAAGGAATTCGCCATTGTAATGCAAGCAATTTTGGCCTTCAGGTATAGTATGAGTGTCAATGCATCACTTGATCAAAATGCATATATTCAAAAAACAATTAGCACCATCATAGGAAAAAGGATGCACTTTATGCTTCTCTAATACTCCCTCCGTACCGGAATATCTGACCCATTTACTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACTCTAATTAATACTACTTTCATCATTCCCAATTCAATATATTCCATTTTCCCCTTTATTTATACATTTTTCTTAATCTGTGTGAAAAACCAAACTAGCTCATATATTCCGGGACGGAGGGAGTATTCTATAATCTATATACATGTAAAAGAAATTGTCACTTATAATCAACTTTTTATTCTAACACCATTCTCTCCAAAACAAAAAATATGATTTTATAAATTACTTTACTTGAGAGTGTCACAACATACTCTTCACTGCATTCTCTGTCGAACGGCATTAATATTTTTCAGGGCACAAAAAATTATATCATTATTATTTTATTTTGCATGACACAGGGGTGCGTGTTTACAAAAGACATAAACAAAGCAATGTTGATAAGCGATGCAATGGAGACAGGAACAGTTCAAATCAATTCAGCACCAGCTCGCGGACCTGATCACTTCCCTTTTCAGGTGCAATATTTTCCCTCCATCTTGCTAAGTTGCCATAAAATTTCATACCTTCGAACTTCAATCCTAATTATATATATATTCCTTAAGTTGTTCTTAGGAAGAAAAAAAATTCAAAGGTTTCTGAAAATTCATATGCAACATAGTTGATCGATATGATAGCTTAACCACCAAGATATTAAATTGCAGCTACATACTTACAGTCATGGTTGCATCTCAAGTCCTTGTTAAGAATAGATATGAAACCATGCAGATTTATGAACATATTTTAGTGAATATCTTTGAATAGTTAATTTTTTCCATGTCTAAACTGCCAAAGTATGATTTGTTGCAGGGTTTGAAGGATAGTGGAATTGGTTCTCAAGGAATCACCAACAGTATTAACATGATGACCAAGATTAAGACCACAGTAATCAACTTGCCAACACCTTCTTATACAATGGGATAA

Protein sequence

>MS.gene016051.t1

MAGSGIFAEIIDGDAFNYYADGKWNKSSSGKFVPIINPTTRKIHFKVQACTQEEVNKAIESAKVAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHMAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKSAMVPLQMELGGKDACIVLEDADLDLVAANIVKGGFSYSGQRCTAVKVALVMESVADILVKKIKDKVAKLTVGPPEDDCDITPVITESSANFIEGLVMDAKKKGATFCQEYRREGNLIWPLLLDNVRSDMRISWEEPFGPVLPVIRINSVEEGIRHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKIKTTVINLPTPSYTMG