Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030576.t1 | XP_003630349.2 | 97.6 | 495 | 12 | 0 | 328 | 822 | 48 | 542 | 4.30E-271 | 944.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030576.t1 | Q8W033 | 64.0 | 516 | 180 | 2 | 307 | 822 | 39 | 548 | 8.4e-191 | 668.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030576.t1 | G7LF15 | 97.6 | 495 | 12 | 0 | 328 | 822 | 48 | 542 | 3.1e-271 | 944.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene013819 | MS.gene030576 | PPI |
MS.gene026652 | MS.gene030576 | PPI |
MS.gene047892 | MS.gene030576 | PPI |
MS.gene012075 | MS.gene030576 | PPI |
MS.gene030576 | MS.gene047890 | PPI |
MS.gene75424 | MS.gene030576 | PPI |
MS.gene030576 | MS.gene93177 | PPI |
MS.gene030576 | MS.gene76463 | PPI |
MS.gene045063 | MS.gene030576 | PPI |
MS.gene33615 | MS.gene030576 | PPI |
MS.gene63030 | MS.gene030576 | PPI |
MS.gene047888 | MS.gene030576 | PPI |
MS.gene030576 | MS.gene89630 | PPI |
MS.gene030576 | MS.gene013817 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030576.t1 | MTR_8g094600 | 96.230 | 504 | 19 | 0 | 319 | 822 | 39 | 542 | 0.0 | 986 |
MS.gene030576.t1 | MTR_3g088150 | 65.918 | 490 | 167 | 0 | 332 | 821 | 1 | 490 | 0.0 | 701 |
MS.gene030576.t1 | MTR_1g029840 | 67.012 | 482 | 159 | 0 | 340 | 821 | 7 | 488 | 0.0 | 700 |
MS.gene030576.t1 | MTR_1g029840 | 66.049 | 486 | 165 | 0 | 336 | 821 | 3 | 488 | 0.0 | 693 |
MS.gene030576.t1 | MTR_8g094610 | 97.248 | 327 | 9 | 0 | 1 | 327 | 1 | 327 | 0.0 | 666 |
MS.gene030576.t1 | MTR_8g076480 | 48.069 | 466 | 242 | 0 | 353 | 818 | 13 | 478 | 3.51e-156 | 465 |
MS.gene030576.t1 | MTR_2g097950 | 47.182 | 479 | 250 | 1 | 344 | 819 | 15 | 493 | 1.68e-153 | 459 |
MS.gene030576.t1 | MTR_4g065040 | 51.092 | 458 | 221 | 1 | 353 | 807 | 9 | 466 | 8.31e-141 | 425 |
MS.gene030576.t1 | MTR_2g097950 | 44.958 | 476 | 230 | 2 | 344 | 819 | 15 | 458 | 2.35e-136 | 413 |
MS.gene030576.t1 | MTR_1222s0010 | 38.420 | 367 | 218 | 4 | 357 | 721 | 13 | 373 | 1.62e-75 | 260 |
MS.gene030576.t1 | MTR_1314s0010 | 34.615 | 338 | 211 | 4 | 449 | 778 | 1 | 336 | 1.47e-67 | 228 |
MS.gene030576.t1 | MTR_2g034160 | 25.767 | 489 | 336 | 10 | 353 | 818 | 92 | 576 | 4.50e-39 | 154 |
MS.gene030576.t1 | MTR_2g067660 | 29.310 | 348 | 237 | 7 | 445 | 786 | 178 | 522 | 5.45e-38 | 149 |
MS.gene030576.t1 | MTR_4g106510 | 29.398 | 432 | 291 | 10 | 371 | 793 | 74 | 500 | 1.76e-35 | 142 |
MS.gene030576.t1 | MTR_3g078550 | 29.508 | 427 | 279 | 10 | 365 | 778 | 38 | 455 | 3.10e-35 | 140 |
MS.gene030576.t1 | MTR_3g078550 | 29.508 | 427 | 279 | 10 | 365 | 778 | 68 | 485 | 4.45e-35 | 140 |
MS.gene030576.t1 | MTR_3g078490 | 28.706 | 425 | 285 | 9 | 365 | 778 | 98 | 515 | 1.49e-32 | 133 |
MS.gene030576.t1 | MTR_4g107040 | 28.280 | 343 | 236 | 7 | 444 | 779 | 196 | 535 | 7.00e-31 | 128 |
MS.gene030576.t1 | MTR_3g078170 | 29.598 | 348 | 225 | 8 | 444 | 779 | 194 | 533 | 1.03e-29 | 125 |
MS.gene030576.t1 | MTR_8g083530 | 25.499 | 451 | 314 | 13 | 347 | 785 | 60 | 500 | 4.18e-29 | 122 |
MS.gene030576.t1 | MTR_8g064170 | 27.335 | 439 | 297 | 13 | 353 | 779 | 104 | 532 | 4.56e-29 | 123 |
MS.gene030576.t1 | MTR_6g086300 | 28.000 | 350 | 242 | 7 | 443 | 785 | 153 | 499 | 3.00e-27 | 117 |
MS.gene030576.t1 | MTR_6g086300 | 28.000 | 350 | 242 | 7 | 443 | 785 | 153 | 499 | 3.00e-27 | 117 |
MS.gene030576.t1 | MTR_6g086340 | 27.246 | 345 | 241 | 7 | 448 | 785 | 156 | 497 | 9.81e-26 | 112 |
MS.gene030576.t1 | MTR_4g131180 | 26.107 | 429 | 282 | 13 | 354 | 761 | 53 | 467 | 1.59e-24 | 108 |
MS.gene030576.t1 | MTR_2g009750 | 26.952 | 397 | 266 | 12 | 415 | 798 | 123 | 508 | 2.70e-23 | 105 |
MS.gene030576.t1 | MTR_2g009750 | 26.952 | 397 | 266 | 12 | 415 | 798 | 122 | 507 | 3.04e-23 | 104 |
MS.gene030576.t1 | MTR_2g009750 | 26.884 | 398 | 266 | 12 | 415 | 798 | 123 | 509 | 3.86e-23 | 104 |
MS.gene030576.t1 | MTR_1g014320 | 25.467 | 428 | 284 | 13 | 355 | 761 | 54 | 467 | 1.83e-22 | 102 |
MS.gene030576.t1 | MTR_4g131180 | 25.679 | 405 | 273 | 11 | 355 | 741 | 54 | 448 | 4.17e-22 | 100 |
MS.gene030576.t1 | MTR_3g078170 | 30.224 | 268 | 169 | 7 | 444 | 699 | 194 | 455 | 6.07e-22 | 100 |
MS.gene030576.t1 | MTR_4g093170 | 27.762 | 353 | 237 | 9 | 446 | 785 | 174 | 521 | 1.41e-21 | 100 |
MS.gene030576.t1 | MTR_8g064170 | 25.114 | 438 | 276 | 14 | 353 | 779 | 104 | 500 | 1.79e-19 | 93.2 |
MS.gene030576.t1 | MTR_4g020720 | 44.660 | 103 | 49 | 3 | 521 | 617 | 121 | 221 | 9.27e-19 | 87.8 |
MS.gene030576.t1 | MTR_1399s0020 | 24.484 | 339 | 207 | 7 | 446 | 782 | 50 | 341 | 9.08e-18 | 86.3 |
MS.gene030576.t1 | MTR_3g078170 | 30.864 | 243 | 150 | 7 | 444 | 674 | 194 | 430 | 2.68e-17 | 85.9 |
MS.gene030576.t1 | MTR_3g078170 | 30.864 | 243 | 150 | 7 | 444 | 674 | 194 | 430 | 3.05e-17 | 85.9 |
MS.gene030576.t1 | MTR_3g078490 | 30.208 | 288 | 189 | 7 | 365 | 645 | 68 | 350 | 4.65e-17 | 84.3 |
MS.gene030576.t1 | MTR_8g083530 | 28.627 | 255 | 165 | 10 | 347 | 592 | 60 | 306 | 3.67e-15 | 78.6 |
MS.gene030576.t1 | MTR_2g042330 | 21.930 | 342 | 255 | 7 | 446 | 777 | 152 | 491 | 6.48e-14 | 75.5 |
MS.gene030576.t1 | MTR_4g020710 | 50.000 | 66 | 33 | 0 | 636 | 701 | 18 | 83 | 4.27e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030576.t1 | AT4G34240 | 64.341 | 516 | 178 | 3 | 307 | 822 | 39 | 548 | 0.0 | 683 |
MS.gene030576.t1 | AT4G34240 | 64.341 | 516 | 178 | 3 | 307 | 822 | 24 | 533 | 0.0 | 682 |
MS.gene030576.t1 | AT1G44170 | 61.795 | 479 | 183 | 0 | 341 | 819 | 4 | 482 | 0.0 | 642 |
MS.gene030576.t1 | AT1G44170 | 61.795 | 479 | 183 | 0 | 341 | 819 | 4 | 482 | 0.0 | 642 |
MS.gene030576.t1 | AT1G44170 | 64.865 | 407 | 143 | 0 | 413 | 819 | 13 | 419 | 0.0 | 579 |
MS.gene030576.t1 | AT4G34240 | 67.822 | 404 | 130 | 0 | 419 | 822 | 3 | 406 | 0.0 | 579 |
MS.gene030576.t1 | AT4G34240 | 65.084 | 358 | 119 | 3 | 307 | 664 | 39 | 390 | 6.77e-154 | 455 |
MS.gene030576.t1 | AT4G36250 | 47.146 | 473 | 247 | 1 | 353 | 822 | 12 | 484 | 3.25e-153 | 457 |
MS.gene030576.t1 | AT5G08750 | 58.457 | 337 | 124 | 7 | 1 | 327 | 1 | 331 | 5.95e-120 | 367 |
MS.gene030576.t1 | AT5G08750 | 58.457 | 337 | 124 | 7 | 1 | 327 | 1 | 331 | 5.95e-120 | 367 |
MS.gene030576.t1 | AT5G08750 | 58.457 | 337 | 124 | 7 | 1 | 327 | 1 | 331 | 5.95e-120 | 367 |
MS.gene030576.t1 | AT5G08750 | 58.457 | 337 | 124 | 7 | 1 | 327 | 1 | 331 | 5.95e-120 | 367 |
MS.gene030576.t1 | AT5G08750 | 58.457 | 337 | 124 | 7 | 1 | 327 | 1 | 331 | 5.95e-120 | 367 |
MS.gene030576.t1 | AT5G08750 | 58.457 | 337 | 124 | 7 | 1 | 327 | 1 | 331 | 5.95e-120 | 367 |
MS.gene030576.t1 | AT5G08750 | 57.864 | 337 | 126 | 7 | 1 | 327 | 8 | 338 | 1.76e-118 | 363 |
MS.gene030576.t1 | AT5G08750 | 57.864 | 337 | 126 | 7 | 1 | 327 | 8 | 338 | 1.76e-118 | 363 |
MS.gene030576.t1 | AT5G08750 | 57.864 | 337 | 126 | 7 | 1 | 327 | 8 | 338 | 1.76e-118 | 363 |
MS.gene030576.t1 | AT5G08750 | 57.864 | 337 | 126 | 7 | 1 | 327 | 8 | 338 | 1.76e-118 | 363 |
MS.gene030576.t1 | AT5G63780 | 53.982 | 339 | 140 | 7 | 1 | 327 | 1 | 335 | 4.25e-109 | 338 |
MS.gene030576.t1 | AT5G63780 | 53.982 | 339 | 140 | 7 | 1 | 327 | 1 | 335 | 4.25e-109 | 338 |
MS.gene030576.t1 | AT3G66658 | 27.273 | 484 | 327 | 9 | 357 | 818 | 96 | 576 | 2.22e-42 | 164 |
MS.gene030576.t1 | AT3G66658 | 27.563 | 439 | 304 | 6 | 357 | 783 | 96 | 532 | 3.30e-42 | 162 |
MS.gene030576.t1 | AT1G79440 | 31.965 | 341 | 221 | 8 | 445 | 778 | 184 | 520 | 1.12e-39 | 155 |
MS.gene030576.t1 | AT1G74920 | 29.343 | 426 | 282 | 12 | 371 | 784 | 69 | 487 | 3.11e-37 | 147 |
MS.gene030576.t1 | AT1G74920 | 29.343 | 426 | 282 | 12 | 371 | 784 | 74 | 492 | 4.64e-37 | 146 |
MS.gene030576.t1 | AT3G48170 | 26.898 | 461 | 318 | 11 | 347 | 793 | 45 | 500 | 1.71e-32 | 133 |
MS.gene030576.t1 | AT1G23800 | 26.846 | 447 | 305 | 12 | 345 | 779 | 89 | 525 | 7.21e-31 | 128 |
MS.gene030576.t1 | AT3G48000 | 25.393 | 445 | 314 | 10 | 345 | 779 | 93 | 529 | 9.00e-29 | 122 |
MS.gene030576.t1 | AT3G24503 | 26.686 | 341 | 240 | 7 | 446 | 779 | 155 | 492 | 3.73e-26 | 114 |
MS.gene030576.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 353 | 761 | 98 | 507 | 7.84e-21 | 97.8 |
MS.gene030576.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 353 | 761 | 58 | 467 | 9.64e-21 | 97.1 |
MS.gene030576.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 353 | 761 | 58 | 467 | 9.64e-21 | 97.1 |
MS.gene030576.t1 | AT2G24270 | 24.350 | 423 | 293 | 12 | 353 | 761 | 58 | 467 | 1.07e-20 | 97.1 |
MS.gene030576.t1 | AT2G14170 | 27.174 | 368 | 248 | 11 | 446 | 799 | 137 | 498 | 1.16e-18 | 90.5 |
MS.gene030576.t1 | AT2G14170 | 27.371 | 369 | 246 | 12 | 446 | 799 | 246 | 607 | 2.48e-18 | 90.1 |
MS.gene030576.t1 | AT1G54100 | 23.894 | 339 | 246 | 9 | 449 | 777 | 154 | 490 | 1.61e-17 | 87.0 |
MS.gene030576.t1 | AT1G54100 | 23.894 | 339 | 246 | 9 | 449 | 777 | 154 | 490 | 1.61e-17 | 87.0 |
MS.gene030576.t1 | AT1G23800 | 30.385 | 260 | 163 | 7 | 345 | 591 | 89 | 343 | 3.49e-17 | 85.1 |
MS.gene030576.t1 | AT2G14170 | 27.451 | 306 | 205 | 9 | 446 | 739 | 246 | 546 | 2.04e-16 | 84.0 |
MS.gene030576.t1 | AT2G37950 | 47.945 | 73 | 34 | 2 | 126 | 196 | 99 | 169 | 3.22e-11 | 63.9 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCCTTTGCTTTCTATAAC+TGG | 0.121129 | 4.2:-8386919 | None:intergenic |
TACACAGATAGCAGCTTTAA+AGG | 0.191916 | 4.2:+8394832 | MS.gene030576:intron |
GTTATGCAAGAGGAGATATT+TGG | 0.197595 | 4.2:+8395146 | MS.gene030576:CDS |
GATTGCTCCAACTATCTTAT+TGG | 0.199481 | 4.2:+8395103 | MS.gene030576:CDS |
TCCAGGAGTGCAGTTGTTTC+AGG | 0.225324 | 4.2:-8393907 | None:intergenic |
ACAGTAATAATTGGCAAAAT+TGG | 0.249721 | 4.2:-8395170 | None:intergenic |
TCAGGATCCACACCAGTATT+TGG | 0.251627 | 4.2:-8387318 | None:intergenic |
GCAACTCGTGGTTTGCCTTT+TGG | 0.265536 | 4.2:+8396015 | MS.gene030576:CDS |
TGTTTAGGTGTAGGGTCTTT+TGG | 0.267870 | 4.2:-8386967 | None:intergenic |
TATATAAAACTGATTTCTTA+TGG | 0.269097 | 4.2:-8396098 | None:intergenic |
ATCTCAATCACCACTTAGTT+TGG | 0.275560 | 4.2:+8386804 | MS.gene030576:CDS |
AGCAGCTTTAAAGGAAGAAT+TGG | 0.292732 | 4.2:+8394841 | MS.gene030576:CDS |
CGGGTATTCTGTACGGGTTC+AGG | 0.298579 | 4.2:-8387489 | None:intergenic |
ATGGTACTCACAGTAATAAT+TGG | 0.320472 | 4.2:-8395179 | None:intergenic |
CCCCTTTGCTTTCTATAACT+GGG | 0.341150 | 4.2:-8386918 | None:intergenic |
CACTGCGTTGCCCGCGGAAA+TGG | 0.344228 | 4.2:-8393779 | None:intergenic |
CAGATAATTCTTGCTTTGCT+TGG | 0.345687 | 4.2:+8396213 | MS.gene030576:CDS |
CTCTTCTAACATCTTCACTA+TGG | 0.350829 | 4.2:-8392675 | None:intergenic |
GAAAATAAACAAGTATTTGA+TGG | 0.363766 | 4.2:+8392560 | MS.gene030576:CDS |
TCCTGAAACAACTGCACTCC+TGG | 0.366164 | 4.2:+8393906 | MS.gene030576:CDS |
AGTTTGTGCTTACAAGAATC+AGG | 0.368371 | 4.2:+8390017 | MS.gene030576:intron |
AAAGTATCTTATCCCACTTC+TGG | 0.373046 | 4.2:-8393930 | None:intergenic |
ATTCTACAGCCCACTTAGTT+CGG | 0.381510 | 4.2:-8387509 | None:intergenic |
TAATTCTTGCTTTGCTTGGA+TGG | 0.383020 | 4.2:+8396217 | MS.gene030576:CDS |
CCCTTTGCTTTCTATAACTG+GGG | 0.385809 | 4.2:-8386917 | None:intergenic |
TGTATATGGAGGGTACCTTA+TGG | 0.386947 | 4.2:-8396142 | None:intergenic |
GTTATATATGCTTCTAGTCT+AGG | 0.388649 | 4.2:-8392743 | None:intergenic |
CGAATGGCGGATTTCCCAAT+TGG | 0.395995 | 4.2:+8392649 | MS.gene030576:CDS |
TGTAAGAATGATTTGGAGAT+TGG | 0.399574 | 4.2:+8387051 | MS.gene030576:CDS |
TCTTCACTATGGCCTCCAAT+TGG | 0.399929 | 4.2:-8392664 | None:intergenic |
CAAAACTTTGAATGCAAACC+CGG | 0.405476 | 4.2:+8386988 | MS.gene030576:CDS |
AGAACTGTCAATGGAGATCT+AGG | 0.405662 | 4.2:+8387279 | MS.gene030576:CDS |
GCAAGCAGGGATGATGTTGC+AGG | 0.410513 | 4.2:-8393826 | None:intergenic |
TATGTGGACAAGATATCTTC+TGG | 0.414474 | 4.2:+8395376 | MS.gene030576:CDS |
TGGAATTTGTAGGACCTAAC+GGG | 0.419868 | 4.2:+8387016 | MS.gene030576:CDS |
GGTTAAGTGAAATTGCACTA+TGG | 0.421292 | 4.2:+8387367 | MS.gene030576:CDS |
GCGGAAATGGCTCCAATGAC+TGG | 0.421715 | 4.2:-8393766 | None:intergenic |
TTATCATTGGATCCAGTCAT+TGG | 0.424102 | 4.2:+8393754 | MS.gene030576:CDS |
AGATATGCAGCCAAAGGCTT+TGG | 0.424118 | 4.2:-8395322 | None:intergenic |
GGAGGATAATAGCTGGCAAA+TGG | 0.425073 | 4.2:+8394669 | MS.gene030576:CDS |
CCTACCTGCAGTGTTATCAT+TGG | 0.425905 | 4.2:+8393741 | MS.gene030576:intron |
CGGATAGCAGCCACAGCATC+AGG | 0.426975 | 4.2:-8387336 | None:intergenic |
AAAATCAAGGCCAAAGCCTT+TGG | 0.435468 | 4.2:+8395312 | MS.gene030576:CDS |
GCTGACTTCAACAAGGTTGT+TGG | 0.442238 | 4.2:+8387225 | MS.gene030576:CDS |
ACAGGGATCTTGCTTGCTAC+AGG | 0.442337 | 4.2:+8387534 | MS.gene030576:CDS |
GTAAGTTCTTCTTTCTTCAC+AGG | 0.445074 | 4.2:-8386742 | None:intergenic |
GGCAAATGGGCATGCAATAG+TGG | 0.448828 | 4.2:+8394683 | MS.gene030576:CDS |
GCACAAGATCATCCAAATAC+TGG | 0.450008 | 4.2:+8387306 | MS.gene030576:CDS |
TTCTACAGCCCACTTAGTTC+GGG | 0.450919 | 4.2:-8387508 | None:intergenic |
TTAAAGTTATTGCTATTATG+AGG | 0.451574 | 4.2:-8387396 | None:intergenic |
TTTGGAGAGGGAGATGGGCT+TGG | 0.454391 | 4.2:+8386822 | MS.gene030576:CDS |
TTGGTTTGTCTCATGAAGAT+AGG | 0.454593 | 4.2:+8387070 | MS.gene030576:CDS |
CTTAGTTCGGGTATTCTGTA+CGG | 0.454973 | 4.2:-8387496 | None:intergenic |
TTATGCAAGAGGAGATATTT+GGG | 0.457790 | 4.2:+8395147 | MS.gene030576:CDS |
TAGAGTAGGTCGCATTGTTA+TGG | 0.459468 | 4.2:+8394463 | MS.gene030576:CDS |
CTTAGTTTGGAGAGGGAGAT+GGG | 0.461446 | 4.2:+8386817 | MS.gene030576:CDS |
GAAACTCTTGAATGAGGATA+AGG | 0.463840 | 4.2:+8394943 | MS.gene030576:CDS |
ACTCCAGTGATTCTTGAGCT+TGG | 0.463911 | 4.2:+8394506 | MS.gene030576:CDS |
GACACAATCTCTGCTGATGA+TGG | 0.464544 | 4.2:-8393360 | None:intergenic |
CTTCTAGTCTAGGTTTAGAA+AGG | 0.464549 | 4.2:-8392733 | None:intergenic |
AAAGAAGAACTTACTGATGA+TGG | 0.464855 | 4.2:+8386751 | MS.gene030576:CDS |
TTTCTAGCAAATTTGCAAGC+AGG | 0.466192 | 4.2:-8393840 | None:intergenic |
CCCCAGTTATAGAAAGCAAA+GGG | 0.466488 | 4.2:+8386917 | MS.gene030576:CDS |
CTTCACTATGGCCTCCAATT+GGG | 0.466557 | 4.2:-8392663 | None:intergenic |
CTTTGCTTGTTAGAGAGCTC+AGG | 0.469563 | 4.2:+8392594 | MS.gene030576:CDS |
GTCATTGGAGCCATTTCCGC+GGG | 0.470626 | 4.2:+8393769 | MS.gene030576:CDS |
TTTGGAGGAGTTGGAGAAAG+TGG | 0.471512 | 4.2:+8396033 | MS.gene030576:CDS |
ATCTCTCATCTCAACATTCG+AGG | 0.471849 | 4.2:-8386776 | None:intergenic |
TTCTAGCAAATTTGCAAGCA+GGG | 0.472320 | 4.2:-8393839 | None:intergenic |
TTTCACTTAACCGTTGCCTT+CGG | 0.479049 | 4.2:-8387356 | None:intergenic |
ACATTTGAATCAACAACAGC+TGG | 0.482725 | 4.2:-8394539 | None:intergenic |
GTCTAGAAAACTGCAGGAAG+TGG | 0.485684 | 4.2:+8389583 | MS.gene030576:intron |
TGCTTACCATCACCCTTGCA+TGG | 0.488640 | 4.2:+8387559 | MS.gene030576:CDS |
TTGATTCCGATCCATCCATA+AGG | 0.489103 | 4.2:+8396127 | MS.gene030576:CDS |
ACTTAGTTTGGAGAGGGAGA+TGG | 0.489835 | 4.2:+8386816 | MS.gene030576:CDS |
TCTTATCCCACTTCTGGTCC+AGG | 0.490487 | 4.2:-8393924 | None:intergenic |
ACGAGTCGTGCATATTGAGT+TGG | 0.490817 | 4.2:-8394920 | None:intergenic |
GGAGTTGGAGAAAGTGGAAT+GGG | 0.490988 | 4.2:+8396039 | MS.gene030576:CDS |
CACTTCAAGAACTGAAACAC+TGG | 0.491328 | 4.2:+8393221 | MS.gene030576:CDS |
TCCTTCTCAGGTGTATATGG+AGG | 0.493263 | 4.2:-8396153 | None:intergenic |
CCTTCTCAGGTGTATATGGA+GGG | 0.495634 | 4.2:-8396152 | None:intergenic |
TTTCACAAATTGTAGATCCA+TGG | 0.495709 | 4.2:-8387170 | None:intergenic |
GGAACATCCAATAAGATAGT+TGG | 0.497071 | 4.2:-8395110 | None:intergenic |
CAACACAACTCCTAGTGGTT+CGG | 0.497401 | 4.2:-8393382 | None:intergenic |
GAAGATAGGTTAATTGAACT+TGG | 0.499595 | 4.2:+8387084 | MS.gene030576:CDS |
CCTCCAAGCTCAAGAATCAC+TGG | 0.501775 | 4.2:-8394509 | None:intergenic |
TTAGTTCGGGTATTCTGTAC+GGG | 0.502395 | 4.2:-8387495 | None:intergenic |
CTGCACTCCTGGACCAGAAG+TGG | 0.504845 | 4.2:+8393917 | MS.gene030576:CDS |
AAGTGGGCTGTAGAATGTAC+AGG | 0.509801 | 4.2:+8387516 | MS.gene030576:CDS |
TGAATGCAAACCCGGGATGA+TGG | 0.511520 | 4.2:+8386996 | MS.gene030576:CDS |
TCCTACAAATTCCATCATCC+CGG | 0.512076 | 4.2:-8387007 | None:intergenic |
AGAGCCAATCTTACAAGCGT+TGG | 0.514311 | 4.2:-8394755 | None:intergenic |
AGTGGTCTTCATATCCTTCT+CGG | 0.517420 | 4.2:+8389601 | MS.gene030576:CDS |
AAACAATGAGCAACTGAAGA+AGG | 0.517946 | 4.2:+8395351 | MS.gene030576:CDS |
AGTGGAATGGGTTGCTACCA+TGG | 0.521895 | 4.2:+8396051 | MS.gene030576:CDS |
GGATGTTCCACAAGAAGCTA+TGG | 0.525082 | 4.2:+8395124 | MS.gene030576:CDS |
TGCATAACCATAGCTTCTTG+TGG | 0.525176 | 4.2:-8395131 | None:intergenic |
GAGGATAATAGCTGGCAAAT+GGG | 0.531521 | 4.2:+8394670 | MS.gene030576:CDS |
GATGTTAGAAGAGAAAGAGA+AGG | 0.533255 | 4.2:+8392685 | MS.gene030576:CDS |
CTGAGGGAAAGAACTGTCAA+TGG | 0.535579 | 4.2:+8387270 | MS.gene030576:CDS |
ATGGCGGATTTCCCAATTGG+AGG | 0.535856 | 4.2:+8392652 | MS.gene030576:CDS |
TCTGCAGTAAGAGTTGTTGA+AGG | 0.537984 | 4.2:+8393877 | MS.gene030576:CDS |
CATCACATGAAGATTTCGCC+TGG | 0.539665 | 4.2:-8393195 | None:intergenic |
CCAGTGATTCTTGAGCTTGG+AGG | 0.540889 | 4.2:+8394509 | MS.gene030576:CDS |
CTTTCTCCAACTCCTCCAAA+AGG | 0.541724 | 4.2:-8396030 | None:intergenic |
CCCGGGATGATGGAATTTGT+AGG | 0.542246 | 4.2:+8387006 | MS.gene030576:CDS |
ACACTGGATGAAACCTGAAA+AGG | 0.549602 | 4.2:+8393237 | MS.gene030576:CDS |
ACTATGCTTGTGCACTCAAG+TGG | 0.552545 | 4.2:+8387139 | MS.gene030576:CDS |
AGGAGTTGGAGAAAGTGGAA+TGG | 0.554064 | 4.2:+8396038 | MS.gene030576:CDS |
GTATTTGGATGATCTTGTGC+GGG | 0.555740 | 4.2:-8387303 | None:intergenic |
ATGGAATTTGTAGGACCTAA+CGG | 0.567150 | 4.2:+8387015 | MS.gene030576:CDS |
CGGTGTTTGTGCTTTAACAG+TGG | 0.567441 | 4.2:+8389624 | MS.gene030576:CDS |
ATCTCCCTCTCCAAACTAAG+TGG | 0.568520 | 4.2:-8386814 | None:intergenic |
ATCACCACTTAGTTTGGAGA+GGG | 0.568877 | 4.2:+8386810 | MS.gene030576:CDS |
CCTACAAATTCCATCATCCC+GGG | 0.569034 | 4.2:-8387006 | None:intergenic |
TATGGAGGGTACCTTATGGA+TGG | 0.573766 | 4.2:-8396138 | None:intergenic |
TATCAAAAGAGAACTTTCCA+TGG | 0.574054 | 4.2:-8396068 | None:intergenic |
GCTTTAGTATAATAAAATCA+AGG | 0.574080 | 4.2:+8395299 | MS.gene030576:CDS |
TATAAGCCATGCAAGGGTGA+TGG | 0.576779 | 4.2:-8387565 | None:intergenic |
CATTTCCGCGGGCAACGCAG+TGG | 0.577408 | 4.2:+8393780 | MS.gene030576:CDS |
CTCAAGTGGTTTATCAACCA+TGG | 0.579150 | 4.2:+8387153 | MS.gene030576:CDS |
TACAGAATACCCGAACTAAG+TGG | 0.582067 | 4.2:+8387499 | MS.gene030576:CDS |
CTGCAGTAAGAGTTGTTGAA+GGG | 0.582509 | 4.2:+8393878 | MS.gene030576:CDS |
TATAGCTCCTCGTGTTGGAA+AGG | 0.584472 | 4.2:+8387584 | MS.gene030576:CDS |
TCTTCAACAATAAAATTCAA+CGG | 0.585056 | 4.2:-8387465 | None:intergenic |
AGAAGCTATGGTTATGCAAG+AGG | 0.586940 | 4.2:+8395136 | MS.gene030576:CDS |
GCAACTGAAGAAGGATTATG+TGG | 0.588911 | 4.2:+8395360 | MS.gene030576:CDS |
TCTACAATTTGTGAAATATG+TGG | 0.589011 | 4.2:+8387177 | MS.gene030576:CDS |
AAGCACAAACACCGCCGAGA+AGG | 0.591207 | 4.2:-8389615 | None:intergenic |
CCCTCCATATACACCTGAGA+AGG | 0.591816 | 4.2:+8396152 | MS.gene030576:CDS |
TGGCTTATAGCTCCTCGTGT+TGG | 0.591993 | 4.2:+8387579 | MS.gene030576:CDS |
TGGTGTGGATCCTGATGCTG+TGG | 0.593862 | 4.2:+8387326 | MS.gene030576:CDS |
AGGGTACCTTATGGATGGAT+CGG | 0.593890 | 4.2:-8396133 | None:intergenic |
GAGATTGTGTCCGAACCACT+AGG | 0.597033 | 4.2:+8393372 | MS.gene030576:CDS |
AGTCATTGGAGCCATTTCCG+CGG | 0.600289 | 4.2:+8393768 | MS.gene030576:CDS |
TTGGTGCAGGTTGCAACTCG+TGG | 0.603431 | 4.2:+8396003 | MS.gene030576:intron |
ACTGCGAGGAGGATAATAGC+TGG | 0.604969 | 4.2:+8394662 | MS.gene030576:CDS |
CAAAACCACTGCGTTGCCCG+CGG | 0.605069 | 4.2:-8393785 | None:intergenic |
GTGAAGAGATATGCAGCCAA+AGG | 0.606873 | 4.2:-8395328 | None:intergenic |
GAGGAGCTATAAGCCATGCA+AGG | 0.608062 | 4.2:-8387572 | None:intergenic |
GTGTTATGCAACTCTATCTG+TGG | 0.608199 | 4.2:+8392526 | MS.gene030576:CDS |
AAAAGAATATGAAGCACTGA+GGG | 0.609832 | 4.2:+8387254 | MS.gene030576:CDS |
ACTCGTGAAACTCTTGAATG+AGG | 0.610650 | 4.2:+8394937 | MS.gene030576:CDS |
TGGACAAGATATCTTCTGGA+GGG | 0.613322 | 4.2:+8395380 | MS.gene030576:CDS |
ACCCCAGTTATAGAAAGCAA+AGG | 0.614358 | 4.2:+8386916 | MS.gene030576:CDS |
TGCACTCCTGGACCAGAAGT+GGG | 0.619653 | 4.2:+8393918 | MS.gene030576:CDS |
AATCACCACTTAGTTTGGAG+AGG | 0.622416 | 4.2:+8386809 | MS.gene030576:CDS |
GGAAGTACAGTCTGACAGCA+AGG | 0.624053 | 4.2:+8386939 | MS.gene030576:CDS |
TGAAATTTCAGTTCACTGCG+AGG | 0.626166 | 4.2:+8394648 | MS.gene030576:intron |
TACTCAGGTAGTGCTAGAGT+AGG | 0.631910 | 4.2:+8394449 | MS.gene030576:intron |
TGCAGTAAGAGTTGTTGAAG+GGG | 0.632245 | 4.2:+8393879 | MS.gene030576:CDS |
AGATCATCCAAATACTGGTG+TGG | 0.637998 | 4.2:+8387311 | MS.gene030576:CDS |
AGGAGCTATAAGCCATGCAA+GGG | 0.640745 | 4.2:-8387571 | None:intergenic |
AGACAAAGAGCTACGAATGG+CGG | 0.643657 | 4.2:+8392636 | MS.gene030576:CDS |
CAGAATAGCTGACTTCAACA+AGG | 0.643926 | 4.2:+8387218 | MS.gene030576:CDS |
ACAGAATACCCGAACTAAGT+GGG | 0.647615 | 4.2:+8387500 | MS.gene030576:CDS |
ATGCTGTGGCTGCTATCCGA+AGG | 0.650141 | 4.2:+8387340 | MS.gene030576:CDS |
CACAACTAATCAGATGGGCA+AGG | 0.651324 | 4.2:+8386708 | None:intergenic |
GTGGACAAGATATCTTCTGG+AGG | 0.652280 | 4.2:+8395379 | MS.gene030576:CDS |
AAAACTTTGAATGCAAACCC+GGG | 0.655283 | 4.2:+8386989 | MS.gene030576:CDS |
AGTATTTGGATGATCTTGTG+CGG | 0.657654 | 4.2:-8387304 | None:intergenic |
ATGATCAACACAACTCCTAG+TGG | 0.658303 | 4.2:-8393387 | None:intergenic |
AAGCATAGTGTACTAAAGCA+AGG | 0.669587 | 4.2:-8387125 | None:intergenic |
GCAAGACAAAGAGCTACGAA+TGG | 0.673266 | 4.2:+8392633 | MS.gene030576:CDS |
TGGCTGCTATCCGAAGGCAA+CGG | 0.676588 | 4.2:+8387346 | MS.gene030576:CDS |
TAAAAGAATATGAAGCACTG+AGG | 0.681117 | 4.2:+8387253 | MS.gene030576:CDS |
TCACATACCTTTCCAACACG+AGG | 0.681169 | 4.2:-8387591 | None:intergenic |
AATTTCAGTTCACTGCGAGG+AGG | 0.681260 | 4.2:+8394651 | MS.gene030576:intron |
TTGTGTTGATCATATCAACA+TGG | 0.681886 | 4.2:+8393397 | MS.gene030576:CDS |
CTTTAACAACAATAGCAATG+TGG | 0.690965 | 4.2:+8387413 | MS.gene030576:CDS |
GTTGCAGGAGAAACTTCTGA+TGG | 0.692797 | 4.2:-8393811 | None:intergenic |
GGAATTTGTAGGACCTAACG+GGG | 0.692992 | 4.2:+8387017 | MS.gene030576:CDS |
ATTTGTAGGACCTAACGGGG+AGG | 0.701694 | 4.2:+8387020 | MS.gene030576:CDS |
AGTGGGCTGTAGAATGTACA+GGG | 0.705839 | 4.2:+8387517 | MS.gene030576:CDS |
ACTAGAAGCATATATAACCG+AGG | 0.707816 | 4.2:+8392748 | MS.gene030576:CDS |
GGTCTTCATATCCTTCTCGG+CGG | 0.716259 | 4.2:+8389604 | MS.gene030576:CDS |
TGGGATAAGATACTTTACAC+AGG | 0.716272 | 4.2:+8393937 | MS.gene030576:CDS |
CCCAGTTATAGAAAGCAAAG+GGG | 0.726941 | 4.2:+8386918 | MS.gene030576:CDS |
TGCGCTGAGTCTGATAAACG+AGG | 0.729647 | 4.2:+8386865 | MS.gene030576:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 8386721 | 8396248 | 8386721 | ID=MS.gene030576 |
chr4.2 | mRNA | 8386721 | 8396248 | 8386721 | ID=MS.gene030576.t1;Parent=MS.gene030576 |
chr4.2 | exon | 8386721 | 8387605 | 8386721 | ID=MS.gene030576.t1.exon1;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8386721 | 8387605 | 8386721 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8389589 | 8389663 | 8389589 | ID=MS.gene030576.t1.exon2;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8389589 | 8389663 | 8389589 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8390019 | 8390038 | 8390019 | ID=MS.gene030576.t1.exon3;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8390019 | 8390038 | 8390019 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8392526 | 8392769 | 8392526 | ID=MS.gene030576.t1.exon4;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8392526 | 8392769 | 8392526 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8393190 | 8393258 | 8393190 | ID=MS.gene030576.t1.exon5;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8393190 | 8393258 | 8393190 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8393336 | 8393432 | 8393336 | ID=MS.gene030576.t1.exon6;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8393336 | 8393432 | 8393336 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8393752 | 8393958 | 8393752 | ID=MS.gene030576.t1.exon7;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8393752 | 8393958 | 8393752 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8394456 | 8394571 | 8394456 | ID=MS.gene030576.t1.exon8;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8394456 | 8394571 | 8394456 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8394659 | 8394763 | 8394659 | ID=MS.gene030576.t1.exon9;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8394659 | 8394763 | 8394659 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8394839 | 8395011 | 8394839 | ID=MS.gene030576.t1.exon10;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8394839 | 8395011 | 8394839 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8395100 | 8395190 | 8395100 | ID=MS.gene030576.t1.exon11;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8395100 | 8395190 | 8395100 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8395280 | 8395429 | 8395280 | ID=MS.gene030576.t1.exon12;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8395280 | 8395429 | 8395280 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
chr4.2 | exon | 8396012 | 8396248 | 8396012 | ID=MS.gene030576.t1.exon13;Parent=MS.gene030576.t1 |
chr4.2 | CDS | 8396012 | 8396248 | 8396012 | ID=cds.MS.gene030576.t1;Parent=MS.gene030576.t1 |
Gene Sequence |
Protein sequence |