AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013819

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013819.t1 MTR_3g088150 96.939 490 14 1 1 489 1 490 0.0 978
MS.gene013819.t1 MTR_1g029840 78.351 485 105 0 5 489 4 488 0.0 811
MS.gene013819.t1 MTR_1g029840 77.755 481 107 0 9 489 8 488 0.0 800
MS.gene013819.t1 MTR_8g094600 66.804 485 161 0 5 489 57 541 0.0 705
MS.gene013819.t1 MTR_8g076480 47.335 469 247 0 14 482 6 474 5.84e-165 475
MS.gene013819.t1 MTR_2g097950 46.764 479 252 1 12 487 15 493 5.48e-159 461
MS.gene013819.t1 MTR_4g065040 50.881 454 220 1 21 471 9 462 8.40e-146 427
MS.gene013819.t1 MTR_2g097950 44.328 476 233 2 12 487 15 458 1.20e-143 420
MS.gene013819.t1 MTR_1222s0010 36.387 382 231 5 18 395 6 379 6.58e-78 258
MS.gene013819.t1 MTR_1314s0010 35.799 338 207 4 117 446 1 336 6.37e-71 229
MS.gene013819.t1 MTR_3g078550 29.954 434 285 9 26 446 28 455 4.32e-40 150
MS.gene013819.t1 MTR_3g078550 29.954 434 285 9 26 446 58 485 8.66e-40 150
MS.gene013819.t1 MTR_4g106510 29.017 417 282 9 39 446 74 485 3.07e-39 149
MS.gene013819.t1 MTR_2g034160 24.777 448 307 8 35 466 106 539 5.22e-39 149
MS.gene013819.t1 MTR_3g078490 29.263 434 288 10 26 446 88 515 1.13e-37 145
MS.gene013819.t1 MTR_2g067660 27.874 348 242 8 113 454 178 522 7.27e-33 131
MS.gene013819.t1 MTR_8g064170 26.773 437 302 11 21 447 104 532 5.61e-30 123
MS.gene013819.t1 MTR_4g107040 26.770 452 299 13 13 447 99 535 6.73e-29 120
MS.gene013819.t1 MTR_8g083530 28.070 342 230 9 116 447 159 494 2.30e-27 115
MS.gene013819.t1 MTR_3g078170 27.212 452 297 14 13 447 97 533 4.10e-27 114
MS.gene013819.t1 MTR_4g131180 26.244 442 301 11 22 447 53 485 3.26e-26 111
MS.gene013819.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene013819.t1 MTR_6g086300 28.319 339 233 8 116 447 158 493 5.74e-25 108
MS.gene013819.t1 MTR_6g086340 27.515 338 235 8 116 446 156 490 8.09e-24 104
MS.gene013819.t1 MTR_1g014320 25.328 458 315 12 6 447 39 485 9.41e-24 104
MS.gene013819.t1 MTR_4g131180 26.119 402 273 10 22 407 53 446 7.77e-23 101
MS.gene013819.t1 MTR_8g064170 24.773 440 287 13 15 447 98 500 8.36e-22 98.6
MS.gene013819.t1 MTR_3g078490 29.310 290 196 6 26 308 58 345 4.82e-19 89.0
MS.gene013819.t1 MTR_2g009750 28.710 310 195 11 114 407 147 446 2.08e-18 88.2
MS.gene013819.t1 MTR_2g009750 28.710 310 195 11 114 407 146 445 2.62e-18 88.2
MS.gene013819.t1 MTR_2g009750 28.710 310 196 11 114 407 147 447 3.01e-18 87.8
MS.gene013819.t1 MTR_4g093170 27.036 307 205 8 114 407 174 474 3.43e-18 87.8
MS.gene013819.t1 MTR_3g078170 27.049 366 237 13 13 361 97 449 6.85e-18 86.3
MS.gene013819.t1 MTR_8g083520 26.163 344 201 10 116 447 150 452 3.40e-17 84.3
MS.gene013819.t1 MTR_8g083520 26.163 344 201 10 116 447 70 372 3.84e-17 83.6
MS.gene013819.t1 MTR_4g020710 48.684 76 39 0 294 369 8 83 6.14e-17 77.8
MS.gene013819.t1 MTR_4g020720 39.200 125 67 4 184 302 116 237 3.07e-16 79.3
MS.gene013819.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.55e-14 75.9
MS.gene013819.t1 MTR_3g078170 30.769 260 148 10 13 252 97 344 1.75e-14 75.9
MS.gene013819.t1 MTR_8g083530 35.762 151 88 5 116 260 159 306 1.91e-13 72.0
MS.gene013819.t1 MTR_1399s0020 27.830 212 143 5 253 462 145 348 3.19e-13 71.2
MS.gene013819.t1 MTR_2g042330 25.685 292 194 12 117 392 155 439 4.67e-13 71.6
MS.gene013819.t1 MTR_1690s0010 27.801 241 153 10 88 313 111 345 5.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013819.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene013819.t1 AT1G44170 68.267 479 152 0 9 487 4 482 0.0 706
MS.gene013819.t1 AT4G34240 64.854 478 168 0 12 489 70 547 0.0 649
MS.gene013819.t1 AT4G34240 64.854 478 168 0 12 489 55 532 0.0 648
MS.gene013819.t1 AT1G44170 70.560 411 121 0 77 487 9 419 0.0 634
MS.gene013819.t1 AT4G34240 67.574 404 131 0 86 489 2 405 0.0 569
MS.gene013819.t1 AT4G36250 47.826 460 237 1 15 471 6 465 4.95e-163 470
MS.gene013819.t1 AT4G34240 66.978 321 106 0 12 332 70 390 3.69e-151 436
MS.gene013819.t1 AT3G66658 27.146 431 296 6 35 451 106 532 9.44e-44 162
MS.gene013819.t1 AT3G66658 27.361 413 282 6 35 433 106 514 1.98e-43 162
MS.gene013819.t1 AT1G74920 28.810 420 284 10 39 448 69 483 9.82e-42 155
MS.gene013819.t1 AT1G74920 28.810 420 284 10 39 448 74 488 1.17e-41 155
MS.gene013819.t1 AT3G48170 27.338 417 289 9 39 446 74 485 1.40e-36 141
MS.gene013819.t1 AT1G23800 27.455 448 301 13 13 447 89 525 1.08e-33 134
MS.gene013819.t1 AT1G79440 29.912 341 228 10 113 446 184 520 1.14e-33 134
MS.gene013819.t1 AT3G48000 26.549 452 300 14 13 447 93 529 7.22e-29 120
MS.gene013819.t1 AT3G24503 27.729 339 235 7 116 447 157 492 2.68e-27 115
MS.gene013819.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene013819.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene013819.t1 AT2G24270 28.144 334 231 7 117 447 158 485 8.77e-25 107
MS.gene013819.t1 AT2G24270 28.707 317 217 7 117 430 198 508 1.00e-24 107
MS.gene013819.t1 AT2G14170 27.378 347 228 12 116 446 248 586 5.74e-18 87.4
MS.gene013819.t1 AT2G14170 27.378 347 228 12 116 446 139 477 6.43e-18 86.7
MS.gene013819.t1 AT1G23800 30.078 256 155 9 13 252 89 336 2.83e-17 84.3
MS.gene013819.t1 AT2G14170 27.273 308 203 10 114 407 246 546 1.09e-16 83.2
MS.gene013819.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2
MS.gene013819.t1 AT1G54100 21.201 283 208 7 117 388 154 432 1.67e-13 73.2

Find 118 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCAATTCTGTCTTTA+AGG 0.114075 3.1:+71104025 None:intergenic
GGGAAAATTTCATACCAATT+TGG 0.160031 3.1:+71104119 None:intergenic
GTTTCTGGCAAGGTTGTTTA+TGG 0.170486 3.1:-71103906 MS.gene013819:CDS
TCACTGCTGGCGAACTTATT+AGG 0.192129 3.1:-71104942 MS.gene013819:CDS
GGAAAATTTCATACCAATTT+GGG 0.208738 3.1:+71104120 None:intergenic
ACAGAATTGGAAAGCTTCTT+TGG 0.227872 3.1:-71104017 MS.gene013819:CDS
TTGGACGACGAGAAGGTTTC+TGG 0.237632 3.1:-71103921 MS.gene013819:CDS
TGGTTCATACTTTGCCATTT+GGG 0.248058 3.1:-71103313 MS.gene013819:CDS
GTGGTTCATACTTTGCCATT+TGG 0.266390 3.1:-71103314 MS.gene013819:CDS
TTTGTTGTTATAACGTAATC+AGG 0.304335 3.1:+71104153 None:intergenic
CACTGCTGGCGAACTTATTA+GGG 0.310991 3.1:-71104941 MS.gene013819:CDS
GATAAATCATTGGATTCTAT+TGG 0.315485 3.1:+71103987 None:intergenic
ACAGCTAGACGGATAATTTC+AGG 0.342418 3.1:-71104213 MS.gene013819:CDS
ACACCTTACACCAGTCGTTC+TGG 0.352826 3.1:-71104596 MS.gene013819:CDS
CTAGTCGCCGGCGATGTTAC+TGG 0.358446 3.1:-71103137 MS.gene013819:CDS
GGATTCAAATGTCAATTTAG+AGG 0.363970 3.1:-71104545 MS.gene013819:intron
CTGAGGGTGAGCTTTAATTC+TGG 0.376691 3.1:-71107103 MS.gene013819:CDS
TTCTAACCACTTTGCTCGCT+TGG 0.378374 3.1:-71103952 MS.gene013819:CDS
TGATGCCTTAAAGACAGAAT+TGG 0.379258 3.1:-71104030 MS.gene013819:CDS
AACACTACACCAAGTGGTTC+AGG 0.380052 3.1:+71105448 None:intergenic
TCCAGCCTCGTCTTCACTGC+TGG 0.400434 3.1:-71104955 MS.gene013819:CDS
TTCTGCTTTGTATCAGTGTA+AGG 0.401680 3.1:+71103173 None:intergenic
GGAGTTGGTGACAGTGGAAT+GGG 0.406759 3.1:-71103290 MS.gene013819:CDS
GAAGATGGTTGATGAACAAC+AGG 0.411988 3.1:-71107032 MS.gene013819:CDS
GGGAGTTGGTGACAGTGGAA+TGG 0.415308 3.1:-71103291 MS.gene013819:CDS
CTGTCCCTTGATCCAGTTGT+TGG 0.425314 3.1:-71105026 MS.gene013819:CDS
CACAATGCGCGATAAATCAT+TGG 0.432655 3.1:+71103977 None:intergenic
TACAAATGACAACAAGTTCA+AGG 0.442505 3.1:-71103494 MS.gene013819:CDS
GCTGCTATAGCTCCAACAAC+TGG 0.444023 3.1:+71105014 None:intergenic
ACACCAGTCGTTCTGGAGCT+TGG 0.446970 3.1:-71104589 MS.gene013819:CDS
ATAATGAGTGAGGAGATCTT+TGG 0.458834 3.1:-71103735 MS.gene013819:CDS
TGCTCGCTTGGTAAAGATGT+TGG 0.468945 3.1:-71103940 MS.gene013819:CDS
TAGCAATAGTATAAAATGTC+GGG 0.472828 3.1:-71107187 None:intergenic
TTTGTGAAGAATGTTTCTGC+TGG 0.473206 3.1:-71103466 MS.gene013819:CDS
GGTACTATTTCAGCTGAAGA+AGG 0.475298 3.1:+71105469 None:intergenic
ACAATGGATGGCCCCAGAAA+AGG 0.476780 3.1:-71105627 MS.gene013819:intron
ACATTTGAATCCACAACAGT+TGG 0.479478 3.1:+71104556 None:intergenic
GGTTGTTTATGGAGGTGAAA+AGG 0.487907 3.1:-71103895 MS.gene013819:CDS
CTGCATTGTTGCAACAAAAG+TGG 0.494247 3.1:-71104863 MS.gene013819:CDS
CTTGGAACAGGTGAACAAGC+TGG 0.495328 3.1:-71103572 MS.gene013819:intron
CGGAGAAGCGGCGTCGTCGT+TGG 0.495817 3.1:-71107134 MS.gene013819:CDS
TAGCTCCAACAACTGGATCA+AGG 0.496212 3.1:+71105021 None:intergenic
TGGAGCGTCTAATACAATAG+TGG 0.501825 3.1:+71103770 None:intergenic
GGTTCATACTTTGCCATTTG+GGG 0.508394 3.1:-71103312 MS.gene013819:CDS
GACGGATAATTTCAGGAAAG+TGG 0.508972 3.1:-71104206 MS.gene013819:CDS
TTACGGGTGATGCATCGATA+AGG 0.514070 3.1:-71103202 MS.gene013819:CDS
GCTCCAGAACGACTGGTGTA+AGG 0.516414 3.1:+71104593 None:intergenic
GTAAATAAATATGCAGCAAG+TGG 0.517979 3.1:+71103514 None:intergenic
GCCAGCAGTGAAGACGAGGC+TGG 0.518366 3.1:+71104954 None:intergenic
AACGTAATCAGGAGAAATGC+AGG 0.519634 3.1:+71104164 None:intergenic
AGGAAAATCTCCAACTGTTG+TGG 0.520349 3.1:-71104566 MS.gene013819:CDS
ATCTATAAGAGTTGTGGAGG+GGG 0.520366 3.1:-71104901 MS.gene013819:CDS
CAGAAGAAGGTGGTGTTTGA+CGG 0.522711 3.1:-71107154 MS.gene013819:CDS
AGCGGCGTCGTCGTTGGTGA+AGG 0.523107 3.1:-71107128 MS.gene013819:CDS
CCTCCAAGCTCCAGAACGAC+TGG 0.525093 3.1:+71104586 None:intergenic
TTTGTGAGTAAAAGCGTCAA+AGG 0.526185 3.1:+71103247 None:intergenic
GGAAAGTGGTGCTGTAACAA+TGG 0.528505 3.1:-71104192 MS.gene013819:CDS
GGGTGAAGAGTCACAGAAGA+AGG 0.530603 3.1:-71107167 MS.gene013819:CDS
CTCATCTATAAGAGTTGTGG+AGG 0.535901 3.1:-71104904 MS.gene013819:CDS
CCAGTCGTTCTGGAGCTTGG+AGG 0.536552 3.1:-71104586 MS.gene013819:CDS
GTTGTTGGAGCTATAGCAGC+CGG 0.541671 3.1:-71105011 MS.gene013819:CDS
TGCTTTGTATCAGTGTAAGG+CGG 0.541950 3.1:+71103176 None:intergenic
GTAAGACACGAAGTTATGAA+TGG 0.543765 3.1:-71107081 MS.gene013819:CDS
AGCTCCAACAACTGGATCAA+GGG 0.544547 3.1:+71105022 None:intergenic
TCTGGCAAGGTTGTTTATGG+AGG 0.544720 3.1:-71103903 MS.gene013819:CDS
TTATGAATGGAGAGTATCGC+AGG 0.547189 3.1:-71107068 MS.gene013819:CDS
TACAAAGCAGAAATTGATGA+AGG 0.548509 3.1:-71103162 MS.gene013819:CDS
TTTATTCTTACCGTGATGAT+GGG 0.548703 3.1:+71103702 None:intergenic
GTGAAGAATGTTTCTGCTGG+GGG 0.549524 3.1:-71103463 MS.gene013819:CDS
TGCATTGTTGCAACAAAAGT+GGG 0.550398 3.1:-71104862 MS.gene013819:CDS
TAGTGTTAGTCATCTCTGCT+TGG 0.552108 3.1:-71105432 MS.gene013819:CDS
TAACTCATCTATAAGAGTTG+TGG 0.553446 3.1:-71104907 MS.gene013819:CDS
CGTCGTTGGTGAAGGAGCTG+AGG 0.553449 3.1:-71107120 MS.gene013819:CDS
CGACGAGAAGGTTTCTGGCA+AGG 0.555363 3.1:-71103916 MS.gene013819:CDS
TTTCAAGCGGTGGTTTAGCA+AGG 0.558890 3.1:+71106981 None:intergenic
CTCATTATCAGAGAATCTTG+TGG 0.559354 3.1:+71103750 None:intergenic
TTGTGAAGAATGTTTCTGCT+GGG 0.560631 3.1:-71103465 MS.gene013819:CDS
TTGATGAAGGCTCTAGTCGC+CGG 0.564772 3.1:-71103149 MS.gene013819:CDS
GAGGCTGGAGCAATTTCTGA+TGG 0.566074 3.1:+71104969 None:intergenic
GAAAATTTCATACCAATTTG+GGG 0.571184 3.1:+71104121 None:intergenic
CGCTGAAGGAATTGAAACAA+TGG 0.574396 3.1:-71105643 MS.gene013819:CDS
GGAGCGTCTAATACAATAGT+GGG 0.580198 3.1:+71103771 None:intergenic
GTGGAATGGGTGCATACCAT+GGG 0.581183 3.1:-71103277 MS.gene013819:CDS
GCTTTGTATCAGTGTAAGGC+GGG 0.584751 3.1:+71103177 None:intergenic
GTTCATACTTTGCCATTTGG+GGG 0.589580 3.1:-71103311 MS.gene013819:CDS
AAAGATGTTGGACGACGAGA+AGG 0.593143 3.1:-71103928 MS.gene013819:CDS
GAAGGAATTGAAACAATGGA+TGG 0.595708 3.1:-71105639 MS.gene013819:CDS
ACCGTGATGATGGGAAGCAA+TGG 0.595840 3.1:+71103711 None:intergenic
CAGGTAATGGAAAAGTGGGA+CGG 0.603039 3.1:-71104642 MS.gene013819:CDS
CTCATGTGAAGTCACGCTGA+AGG 0.604871 3.1:-71105657 MS.gene013819:CDS
TCATCTATAAGAGTTGTGGA+GGG 0.608439 3.1:-71104903 MS.gene013819:CDS
GTCGTTGGTGAAGGAGCTGA+GGG 0.610188 3.1:-71107119 MS.gene013819:CDS
TTTACTAGGTTACAGCTAGA+CGG 0.610366 3.1:-71104224 MS.gene013819:intron
AGCTTCGATTTGATCAACGC+AGG 0.611901 3.1:-71103544 MS.gene013819:CDS
GGTGGTGTTTGACGGAGAAG+CGG 0.613325 3.1:-71107146 MS.gene013819:CDS
TAGACAACAGTTTCAAGCGG+TGG 0.617970 3.1:+71106971 None:intergenic
TCCATTGCTTCCCATCATCA+CGG 0.625141 3.1:-71103712 MS.gene013819:intron
GAACTTATTAGGGAGGTACA+TGG 0.626641 3.1:-71104931 MS.gene013819:CDS
AAAATTTCATACCAATTTGG+GGG 0.628857 3.1:+71104122 None:intergenic
GTTCGCCAGCAGTGAAGACG+AGG 0.630975 3.1:+71104950 None:intergenic
AACAACACCAGTAACATCGC+CGG 0.631565 3.1:+71103130 None:intergenic
CATCTATAAGAGTTGTGGAG+GGG 0.632599 3.1:-71104902 MS.gene013819:CDS
GAAATAGTACCTGAACCACT+TGG 0.636077 3.1:-71105457 MS.gene013819:CDS
AGATTCTCTGATAATGAGTG+AGG 0.639886 3.1:-71103745 MS.gene013819:CDS
ATGACTAACACTACACCAAG+TGG 0.646296 3.1:+71105442 None:intergenic
CAATGCAGTAGTTTCATCAA+CGG 0.649582 3.1:+71104878 None:intergenic
TGTGAAGAATGTTTCTGCTG+GGG 0.658052 3.1:-71103464 MS.gene013819:CDS
TGCTGGCGAACTTATTAGGG+AGG 0.664145 3.1:-71104938 MS.gene013819:CDS
AAAAGTGGGACGGATAGTGA+TGG 0.666797 3.1:-71104632 MS.gene013819:CDS
AGTGGGACGGATAGTGATGG+CGG 0.669702 3.1:-71104629 MS.gene013819:CDS
AGTGGAATGGGTGCATACCA+TGG 0.672625 3.1:-71103278 MS.gene013819:CDS
TCTTTACCAAGCGAGCAAAG+TGG 0.678259 3.1:+71103946 None:intergenic
GCTTGAAACTGTTGTCTACG+AGG 0.679853 3.1:-71106966 MS.gene013819:intron
TGAAGAGTCACAGAAGAAGG+TGG 0.679895 3.1:-71107164 MS.gene013819:CDS
TATAGCAGCCGGAAACGCCG+TGG 0.683688 3.1:-71105000 MS.gene013819:CDS
TCGTAGACAACAGTTTCAAG+CGG 0.691579 3.1:+71106968 None:intergenic
CGTCAAAGGAGAATTTCCCA+TGG 0.693948 3.1:+71103261 None:intergenic
ATGCATCACCCGTAAAACCA+CGG 0.701105 3.1:+71103210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAACTTAAAATATTTTT+GGG - chr3.1:71104365-71104384 MS.gene013819:intron 10.0%
!!! TCATATATATATGATTTTTA+TGG - chr3.1:71103361-71103380 MS.gene013819:intron 10.0%
!!! TTTTATGTTTTCTTTAATAA+AGG - chr3.1:71103597-71103616 MS.gene013819:intron 10.0%
!! TAGATTATTAAAGAAACTAA+AGG + chr3.1:71105191-71105210 None:intergenic 15.0%
!!! GATTCAACTTAAAATATTTT+TGG - chr3.1:71104364-71104383 MS.gene013819:intron 15.0%
!!! TAAAGTTAAATTGTTTTCAA+TGG + chr3.1:71105832-71105851 None:intergenic 15.0%
!!! TAAATTAATTTGTGTTTACT+AGG - chr3.1:71106040-71106059 MS.gene013819:intron 15.0%
!!! TATATCTAAATCAATTTGTT+AGG - chr3.1:71103864-71103883 MS.gene013819:intron 15.0%
!! AAAAATAAACTTTGATTGAC+TGG - chr3.1:71104037-71104056 MS.gene013819:intron 20.0%
!! AAAATTCACAATACCAATAA+TGG + chr3.1:71105539-71105558 None:intergenic 20.0%
!! AAGATATCGTGAAAAATTTA+TGG + chr3.1:71105019-71105038 None:intergenic 20.0%
!! AGTTCCTTTAATAATATTTC+AGG - chr3.1:71104763-71104782 MS.gene013819:intron 20.0%
!! TACAAATGTTACAAAATGTT+CGG + chr3.1:71104463-71104482 None:intergenic 20.0%
!! TTAAGTCAATAATGAGTTAA+GGG + chr3.1:71106023-71106042 None:intergenic 20.0%
!! TTAGCCTGAAATATTATTAA+AGG + chr3.1:71104770-71104789 None:intergenic 20.0%
!! TTTAAAAATTTAGTATCCCT+TGG - chr3.1:71104388-71104407 MS.gene013819:intron 20.0%
!! TTTAAGTCAATAATGAGTTA+AGG + chr3.1:71106024-71106043 None:intergenic 20.0%
!!! AAAAGCATTTTTCTTTTTGA+AGG + chr3.1:71103647-71103666 None:intergenic 20.0%
!!! AAAAGGTGTATGTAAAATAA+GGG - chr3.1:71104003-71104022 MS.gene013819:CDS 20.0%
!!! AAAGCATTTTTCTTTTTGAA+GGG + chr3.1:71103646-71103665 None:intergenic 20.0%
!!! ATAAACATCATAAGTTTTCA+AGG - chr3.1:71103473-71103492 MS.gene013819:CDS 20.0%
!!! ATGGTTATGAATTGTTATTT+TGG - chr3.1:71105492-71105511 MS.gene013819:CDS 20.0%
!!! ATTAAATTTTTCATCCAATC+AGG - chr3.1:71105931-71105950 MS.gene013819:intron 20.0%
!!! GTAACTAAACAAACATATTT+TGG - chr3.1:71104480-71104499 MS.gene013819:intron 20.0%
!!! GTTACTCTATTTTGAATTTA+TGG + chr3.1:71104441-71104460 None:intergenic 20.0%
!!! TAAAAGGTGTATGTAAAATA+AGG - chr3.1:71104002-71104021 MS.gene013819:CDS 20.0%
!!! TAAGTAATTACTTGATTTTC+AGG - chr3.1:71105617-71105636 MS.gene013819:intron 20.0%
!!! TATGTTTTCTTTAATAAAGG+AGG - chr3.1:71103600-71103619 MS.gene013819:intron 20.0%
!!! TATTCTTGAGATTTTTCATT+TGG - chr3.1:71103502-71103521 MS.gene013819:CDS 20.0%
!!! TATTTTGAATTTATGGAAAG+CGG + chr3.1:71104434-71104453 None:intergenic 20.0%
!!! TGTATCCAATTTAAAACAAT+GGG - chr3.1:71106656-71106675 MS.gene013819:intron 20.0%
!!! TTCACCTTCTTTTTTTTTTA+CGG - chr3.1:71103665-71103684 MS.gene013819:intron 20.0%
!!! TTCTGGAAAATATAAGTAAA+AGG - chr3.1:71103986-71104005 MS.gene013819:CDS 20.0%
!!! TTGTATCCAATTTAAAACAA+TGG - chr3.1:71106655-71106674 MS.gene013819:intron 20.0%
!!! TTTACCTTTTGTTATACAAA+TGG - chr3.1:71105060-71105079 MS.gene013819:intron 20.0%
! AAAATTTCATACCAATTTGG+GGG + chr3.1:71106159-71106178 None:intergenic 25.0%
! AATCAAAGTAATTGTATCGT+CGG + chr3.1:71103553-71103572 None:intergenic 25.0%
! AGCAACTTAAACATGAAATT+AGG + chr3.1:71103340-71103359 None:intergenic 25.0%
! ATAAGTAACATTGCATGATA+AGG + chr3.1:71106918-71106937 None:intergenic 25.0%
! ATAATACTTTCTTTCTTGCT+TGG - chr3.1:71106688-71106707 MS.gene013819:intron 25.0%
! CACTATATATCGAAAACTAT+TGG + chr3.1:71103917-71103936 None:intergenic 25.0%
! GAAAATTTCATACCAATTTG+GGG + chr3.1:71106160-71106179 None:intergenic 25.0%
! GATAAATCATTGGATTCTAT+TGG + chr3.1:71106294-71106313 None:intergenic 25.0%
! GGAAAATTTCATACCAATTT+GGG + chr3.1:71106161-71106180 None:intergenic 25.0%
! TAAAATATTGACGTCATACA+AGG + chr3.1:71103582-71103601 None:intergenic 25.0%
! TAAGCCATTTGTATAACAAA+AGG + chr3.1:71105067-71105086 None:intergenic 25.0%
! TAAGTCAATAATGAGTTAAG+GGG + chr3.1:71106022-71106041 None:intergenic 25.0%
! TATACTATTCTCAACTACAT+TGG - chr3.1:71104342-71104361 MS.gene013819:intron 25.0%
! TGACTGGAAAATAAAAAAGA+AGG + chr3.1:71105970-71105989 None:intergenic 25.0%
! TGTTCCGTAAAAAAAAAAGA+AGG + chr3.1:71103672-71103691 None:intergenic 25.0%
! TTAATAAGTCAATCCAAACA+TGG + chr3.1:71105771-71105790 None:intergenic 25.0%
!! ACAAAATTTTGTATACAGGT+TGG - chr3.1:71105439-71105458 MS.gene013819:CDS 25.0%
!! GTATCCAATTTAAAACAATG+GGG - chr3.1:71106657-71106676 MS.gene013819:intron 25.0%
!! TTTTATATACTGCAATGCAA+TGG - chr3.1:71106451-71106470 MS.gene013819:intron 25.0%
!!! ATTACTTGATTTTCAGGTAA+TGG - chr3.1:71105623-71105642 MS.gene013819:intron 25.0%
!!! CAATTTAGAGGTATTGATTA+AGG - chr3.1:71105745-71105764 MS.gene013819:intron 25.0%
!!! CATAATAAATTGGTTTGGTT+TGG - chr3.1:71103827-71103846 MS.gene013819:intron 25.0%
!!! TGTTTTTTACAATGAGTAGT+TGG - chr3.1:71104073-71104092 MS.gene013819:intron 25.0%
!!! TTTGTTGTTATAACGTAATC+AGG + chr3.1:71106128-71106147 None:intergenic 25.0%
AATACAACTAAGCAATTGAC+AGG - chr3.1:71104506-71104525 MS.gene013819:intron 30.0%
AATCACGTAAATACAAGTCA+CGG - chr3.1:71103730-71103749 MS.gene013819:CDS 30.0%
AATCCTAATAGCCATAACTT+TGG - chr3.1:71104116-71104135 MS.gene013819:intron 30.0%
ACTTCCTAGGCATAATAAAT+TGG - chr3.1:71103817-71103836 MS.gene013819:intron 30.0%
ATTGAGTGAAATGAAACCAA+GGG + chr3.1:71104407-71104426 None:intergenic 30.0%
CAAACCAATTTATTATGCCT+AGG + chr3.1:71103824-71103843 None:intergenic 30.0%
CCATTTAGTAAAAAGGAAAG+AGG + chr3.1:71104294-71104313 None:intergenic 30.0%
CCTACTAAACTTGAATTAAG+AGG + chr3.1:71106431-71106450 None:intergenic 30.0%
CTAGGCATAATAAATTGGTT+TGG - chr3.1:71103822-71103841 MS.gene013819:intron 30.0%
GATAAGGATATATGCATTCA+TGG + chr3.1:71106902-71106921 None:intergenic 30.0%
GGATTCAAATGTCAATTTAG+AGG - chr3.1:71105733-71105752 MS.gene013819:intron 30.0%
GGGAAAATTTCATACCAATT+TGG + chr3.1:71106162-71106181 None:intergenic 30.0%
GTAAATAAATATGCAGCAAG+TGG + chr3.1:71106767-71106786 None:intergenic 30.0%
GTCTTTGTGTATCTAATGTT+TGG - chr3.1:71106207-71106226 MS.gene013819:intron 30.0%
TAACTCAAATACAACCAACA+AGG + chr3.1:71105158-71105177 None:intergenic 30.0%
TAACTCATCTATAAGAGTTG+TGG - chr3.1:71105371-71105390 MS.gene013819:intron 30.0%
TACAAAGCAGAAATTGATGA+AGG - chr3.1:71107116-71107135 MS.gene013819:CDS 30.0%
TACAAATGACAACAAGTTCA+AGG - chr3.1:71106784-71106803 MS.gene013819:intron 30.0%
TATTGTGTCAACCAAAGTTA+TGG + chr3.1:71104130-71104149 None:intergenic 30.0%
TCATATTGCTTTCATGTGTA+AGG + chr3.1:71105878-71105897 None:intergenic 30.0%
TGATATAACTAGTTACTGAC+TGG + chr3.1:71105986-71106005 None:intergenic 30.0%
TTAGTAAAAAGGAAAGAGGT+TGG + chr3.1:71104290-71104309 None:intergenic 30.0%
TTTATTCTTACCGTGATGAT+GGG + chr3.1:71106579-71106598 None:intergenic 30.0%
! ATTTAGAACTCTTAACAACG+AGG + chr3.1:71106183-71106202 None:intergenic 30.0%
! ATTTGGAGTCACTATTATGA+TGG - chr3.1:71103519-71103538 MS.gene013819:CDS 30.0%
! CCTCTTAATTCAAGTTTAGT+AGG - chr3.1:71106428-71106447 MS.gene013819:intron 30.0%
! CCTCTTTCCTTTTTACTAAA+TGG - chr3.1:71104291-71104310 MS.gene013819:intron 30.0%
! GGGTAAAATAAACCTTTTCT+GGG + chr3.1:71104666-71104685 None:intergenic 30.0%
! GGTAAAATAAACCTTTTCTG+GGG + chr3.1:71104665-71104684 None:intergenic 30.0%
! TGGGACAAAATTTTGTATAC+AGG - chr3.1:71105435-71105454 MS.gene013819:CDS 30.0%
! TTTAGAACTCTTAACAACGA+GGG + chr3.1:71106182-71106201 None:intergenic 30.0%
! TTTTATTCTTACCGTGATGA+TGG + chr3.1:71106580-71106599 None:intergenic 30.0%
!!! ATGTACTTTGTTTTGCAGAT+TGG - chr3.1:71104586-71104605 MS.gene013819:CDS 30.0%
!!! ATTTTCAGGTAATGGAAAAG+TGG - chr3.1:71105631-71105650 MS.gene013819:CDS 30.0%
!!! TTTTCAGGTAATGGAAAAGT+GGG - chr3.1:71105632-71105651 MS.gene013819:CDS 30.0%
AAGTAATTGTATCGTCGGAA+CGG + chr3.1:71103548-71103567 None:intergenic 35.0%
ACAGAATTGGAAAGCTTCTT+TGG - chr3.1:71106261-71106280 MS.gene013819:intron 35.0%
ACATTTGAATCCACAACAGT+TGG + chr3.1:71105725-71105744 None:intergenic 35.0%
ACGGAGTCCATTTAGTAAAA+AGG + chr3.1:71104301-71104320 None:intergenic 35.0%
AGGATGCTTCTTAAAAGACA+GGG - chr3.1:71103758-71103777 MS.gene013819:CDS 35.0%
ATAATGAGTGAGGAGATCTT+TGG - chr3.1:71106543-71106562 MS.gene013819:intron 35.0%
ATGGAGGAATAAAACTTCCT+AGG - chr3.1:71103804-71103823 MS.gene013819:intron 35.0%
CAACCAAAGTTATGGCTATT+AGG + chr3.1:71104122-71104141 None:intergenic 35.0%
CAATGCAGTAGTTTCATCAA+CGG + chr3.1:71105403-71105422 None:intergenic 35.0%
CATTGAGTGAAATGAAACCA+AGG + chr3.1:71104408-71104427 None:intergenic 35.0%
CTAAACAGTCTCAAGAATGT+TGG + chr3.1:71104939-71104958 None:intergenic 35.0%
CTCATTATCAGAGAATCTTG+TGG + chr3.1:71106531-71106550 None:intergenic 35.0%
CTGAAGGTCAACTTACAAAA+TGG + chr3.1:71104878-71104897 None:intergenic 35.0%
GAAGGAATTGAAACAATGGA+TGG - chr3.1:71104639-71104658 MS.gene013819:CDS 35.0%
GCTTTCCAATTCTGTCTTTA+AGG + chr3.1:71106256-71106275 None:intergenic 35.0%
GGATATATGCATTCATGGAA+AGG + chr3.1:71106897-71106916 None:intergenic 35.0%
GTAACTTGAAAATGCTATGC+AGG + chr3.1:71104202-71104221 None:intergenic 35.0%
GTAAGACACGAAGTTATGAA+TGG - chr3.1:71103197-71103216 MS.gene013819:CDS 35.0%
GTTCTGTTCTGTTAAACAAC+TGG + chr3.1:71105136-71105155 None:intergenic 35.0%
TCAATAATGAGTTAAGGGGA+AGG + chr3.1:71106018-71106037 None:intergenic 35.0%
TCATCTATAAGAGTTGTGGA+GGG - chr3.1:71105375-71105394 MS.gene013819:intron 35.0%
TCTTGACACAAGCAAATTAC+AGG - chr3.1:71106475-71106494 MS.gene013819:intron 35.0%
TGATGCCTTAAAGACAGAAT+TGG - chr3.1:71106248-71106267 MS.gene013819:intron 35.0%
TGCAATTGGTATGCCATTAT+TGG - chr3.1:71105523-71105542 MS.gene013819:intron 35.0%
TGCATTGTTGCAACAAAAGT+GGG - chr3.1:71105416-71105435 MS.gene013819:intron 35.0%
TTAACAGAACAGAACCTTGT+TGG - chr3.1:71105141-71105160 MS.gene013819:intron 35.0%
TTTACTAGGTTACAGCTAGA+CGG - chr3.1:71106054-71106073 MS.gene013819:intron 35.0%
! AGATTCTCTGATAATGAGTG+AGG - chr3.1:71106533-71106552 MS.gene013819:intron 35.0%
! ATTGTTTTCAATGGCTATCC+AGG + chr3.1:71105823-71105842 None:intergenic 35.0%
! GGGGTAAAATAAACCTTTTC+TGG + chr3.1:71104667-71104686 None:intergenic 35.0%
! TAATTTTAAGCACGGTCAAG+AGG + chr3.1:71104257-71104276 None:intergenic 35.0%
! TGACGCTTTTACTCACAAAA+AGG - chr3.1:71107035-71107054 MS.gene013819:CDS 35.0%
! TGGTTCATACTTTGCCATTT+GGG - chr3.1:71106965-71106984 MS.gene013819:intron 35.0%
! TTGTGAAGAATGTTTCTGCT+GGG - chr3.1:71106813-71106832 MS.gene013819:intron 35.0%
! TTGTGAGAACTAAAGTGTTC+TGG - chr3.1:71103969-71103988 MS.gene013819:CDS 35.0%
! TTTGTGAAGAATGTTTCTGC+TGG - chr3.1:71106812-71106831 MS.gene013819:intron 35.0%
!! AGTTCTTTACCGTGGTTTTA+CGG - chr3.1:71107059-71107078 MS.gene013819:CDS 35.0%
!! GAAGGCGCTAATTTATTCAA+TGG - chr3.1:71103785-71103804 MS.gene013819:intron 35.0%
!! GTATTGATTAAGGCCATGTT+TGG - chr3.1:71105755-71105774 MS.gene013819:intron 35.0%
!! TATCACCAGTCTGTTTTTCT+TGG - chr3.1:71105469-71105488 MS.gene013819:CDS 35.0%
!! TTTGTGAGTAAAAGCGTCAA+AGG + chr3.1:71107034-71107053 None:intergenic 35.0%
!!! GATGCCCCATTGTTTTAAAT+TGG + chr3.1:71106664-71106683 None:intergenic 35.0%
!!! TTCTGATGGTTTTAGAACCA+CGG + chr3.1:71105298-71105317 None:intergenic 35.0%
!!! TTTTGGTTTTGTCGTGCAAT+TGG - chr3.1:71105509-71105528 MS.gene013819:intron 35.0%
AAAAAGGCAGTTCTTTACCG+TGG - chr3.1:71107051-71107070 MS.gene013819:CDS 40.0%
AAAAGACTTTGCCCCCAAAT+TGG - chr3.1:71106145-71106164 MS.gene013819:intron 40.0%
AAAAGGAAAGAGGTTGGACT+AGG + chr3.1:71104284-71104303 None:intergenic 40.0%
AAATACAAGTCACGGAAACC+AGG - chr3.1:71103738-71103757 MS.gene013819:CDS 40.0%
AACGTAATCAGGAGAAATGC+AGG + chr3.1:71106117-71106136 None:intergenic 40.0%
AAGTTGACCTTCAGCATGAT+TGG - chr3.1:71104884-71104903 MS.gene013819:CDS 40.0%
ACAGCTAGACGGATAATTTC+AGG - chr3.1:71106065-71106084 MS.gene013819:intron 40.0%
ACCATCCAAGAAAAACAGAC+TGG + chr3.1:71105477-71105496 None:intergenic 40.0%
AGGAAAATCTCCAACTGTTG+TGG - chr3.1:71105712-71105731 MS.gene013819:intron 40.0%
AGTCAAACCAATCATGCTGA+AGG + chr3.1:71104894-71104913 None:intergenic 40.0%
ATCTATAAGAGTTGTGGAGG+GGG - chr3.1:71105377-71105396 MS.gene013819:intron 40.0%
ATGACTAACACTACACCAAG+TGG + chr3.1:71104839-71104858 None:intergenic 40.0%
CACAATGCGCGATAAATCAT+TGG + chr3.1:71106304-71106323 None:intergenic 40.0%
CAGGATGCTTCTTAAAAGAC+AGG - chr3.1:71103757-71103776 MS.gene013819:CDS 40.0%
CATCTATAAGAGTTGTGGAG+GGG - chr3.1:71105376-71105395 MS.gene013819:intron 40.0%
CCTTCTCAGCTGAAGAAATT+GGG + chr3.1:71104687-71104706 None:intergenic 40.0%
CGCTGAAGGAATTGAAACAA+TGG - chr3.1:71104635-71104654 MS.gene013819:CDS 40.0%
CGTAGCAGTTGAGAAAAACT+CGG - chr3.1:71104318-71104337 MS.gene013819:intron 40.0%
CTCATCTATAAGAGTTGTGG+AGG - chr3.1:71105374-71105393 MS.gene013819:intron 40.0%
CTGCATTGTTGCAACAAAAG+TGG - chr3.1:71105415-71105434 MS.gene013819:intron 40.0%
CTTAAAAGACAGGGACAAGA+AGG - chr3.1:71103767-71103786 MS.gene013819:CDS 40.0%
CTTCTCAGCTGAAGAAATTG+GGG + chr3.1:71104686-71104705 None:intergenic 40.0%
CTTTCTTTCTTGCTTGGAAC+AGG - chr3.1:71106694-71106713 MS.gene013819:intron 40.0%
GAAATAGTACCTGAACCACT+TGG - chr3.1:71104821-71104840 MS.gene013819:intron 40.0%
GACGGATAATTTCAGGAAAG+TGG - chr3.1:71106072-71106091 MS.gene013819:intron 40.0%
GCTAAGACTTAGAACCTGAT+TGG + chr3.1:71105948-71105967 None:intergenic 40.0%
GGCGCTAATTTATTCAATGG+AGG - chr3.1:71103788-71103807 MS.gene013819:intron 40.0%
GGTACTATTTCAGCTGAAGA+AGG + chr3.1:71104812-71104831 None:intergenic 40.0%
GGTTGTTTATGGAGGTGAAA+AGG - chr3.1:71106383-71106402 MS.gene013819:intron 40.0%
GTACATCAGTGAAGAGTAGA+AGG + chr3.1:71104572-71104591 None:intergenic 40.0%
GTGGTTCATACTTTGCCATT+TGG - chr3.1:71106964-71106983 MS.gene013819:intron 40.0%
TAGTGTTAGTCATCTCTGCT+TGG - chr3.1:71104846-71104865 MS.gene013819:CDS 40.0%
TCCTTCTCAGCTGAAGAAAT+TGG + chr3.1:71104688-71104707 None:intergenic 40.0%
TCGTAGACAACAGTTTCAAG+CGG + chr3.1:71103313-71103332 None:intergenic 40.0%
TGAAAATGCTATGCAGGCAT+TGG + chr3.1:71104196-71104215 None:intergenic 40.0%
TGACACAAGCAAATTACAGG+AGG - chr3.1:71106478-71106497 MS.gene013819:intron 40.0%
! CGAGTTTTTCTCAACTGCTA+CGG + chr3.1:71104320-71104339 None:intergenic 40.0%
! GAACTTATTAGGGAGGTACA+TGG - chr3.1:71105347-71105366 MS.gene013819:intron 40.0%
! GGAGCGTCTAATACAATAGT+GGG + chr3.1:71106510-71106529 None:intergenic 40.0%
! GGTTCATACTTTGCCATTTG+GGG - chr3.1:71106966-71106985 MS.gene013819:intron 40.0%
! GTTATTTCCTTCAGTTCTCC+TGG - chr3.1:71105802-71105821 MS.gene013819:intron 40.0%
! GTTCATACTTTGCCATTTGG+GGG - chr3.1:71106967-71106986 MS.gene013819:CDS 40.0%
! TAGGCGGCTAATTTTAAGCA+CGG + chr3.1:71104265-71104284 None:intergenic 40.0%
! TGGAGCGTCTAATACAATAG+TGG + chr3.1:71106511-71106530 None:intergenic 40.0%
! TGTGAAGAATGTTTCTGCTG+GGG - chr3.1:71106814-71106833 MS.gene013819:intron 40.0%
! TTGTTCGTGCTCTTTTTGGA+TGG - chr3.1:71107166-71107185 MS.gene013819:CDS 40.0%
!! ACCAGTCTGTTTTTCTTGGA+TGG - chr3.1:71105473-71105492 MS.gene013819:CDS 40.0%
!! GAAGATGGTTGATGAACAAC+AGG - chr3.1:71103246-71103265 MS.gene013819:CDS 40.0%
!! GGTGAAAGCTCTTTTGAAGA+TGG - chr3.1:71103231-71103250 MS.gene013819:CDS 40.0%
!! GTTCTTTACCGTGGTTTTAC+GGG - chr3.1:71107060-71107079 MS.gene013819:CDS 40.0%
!! GTTTCTGGCAAGGTTGTTTA+TGG - chr3.1:71106372-71106391 MS.gene013819:intron 40.0%
!! TTATGAATGGAGAGTATCGC+AGG - chr3.1:71103210-71103229 MS.gene013819:CDS 40.0%
!!! CTGTCTTTTAAGAAGCATCC+TGG + chr3.1:71103759-71103778 None:intergenic 40.0%
AAAAGTGGGACGGATAGTGA+TGG - chr3.1:71105646-71105665 MS.gene013819:CDS 45.0%
AAAGATGTTGGACGACGAGA+AGG - chr3.1:71106350-71106369 MS.gene013819:intron 45.0%
AACAACACCAGTAACATCGC+CGG + chr3.1:71107151-71107170 None:intergenic 45.0%
AACACTACACCAAGTGGTTC+AGG + chr3.1:71104833-71104852 None:intergenic 45.0%
AGCTCCAACAACTGGATCAA+GGG + chr3.1:71105259-71105278 None:intergenic 45.0%
AGTTACTCGCGAAATTCGCA+TGG - chr3.1:71104216-71104235 MS.gene013819:CDS 45.0%
ATGCATCACCCGTAAAACCA+CGG + chr3.1:71107071-71107090 None:intergenic 45.0%
CACTGCTGGCGAACTTATTA+GGG - chr3.1:71105337-71105356 MS.gene013819:intron 45.0%
CAGAAGAAGGTGGTGTTTGA+CGG - chr3.1:71103124-71103143 MS.gene013819:CDS 45.0%
CCCAATTTCTTCAGCTGAGA+AGG - chr3.1:71104684-71104703 MS.gene013819:intron 45.0%
CGTCAAAGGAGAATTTCCCA+TGG + chr3.1:71107020-71107039 None:intergenic 45.0%
GCTTGAAACTGTTGTCTACG+AGG - chr3.1:71103312-71103331 MS.gene013819:CDS 45.0%
TAGACAACAGTTTCAAGCGG+TGG + chr3.1:71103310-71103329 None:intergenic 45.0%
TAGCTCCAACAACTGGATCA+AGG + chr3.1:71105260-71105279 None:intergenic 45.0%
TATGAACCACAAGCTGCACA+AGG + chr3.1:71106954-71106973 None:intergenic 45.0%
TCACTGCTGGCGAACTTATT+AGG - chr3.1:71105336-71105355 MS.gene013819:intron 45.0%
TCCATTGCTTCCCATCATCA+CGG - chr3.1:71106566-71106585 MS.gene013819:intron 45.0%
TCTGGCAAGGTTGTTTATGG+AGG - chr3.1:71106375-71106394 MS.gene013819:intron 45.0%
TCTTTACCAAGCGAGCAAAG+TGG + chr3.1:71106335-71106354 None:intergenic 45.0%
TGAAGAGTCACAGAAGAAGG+TGG - chr3.1:71103114-71103133 MS.gene013819:CDS 45.0%
TGCGTATTAGTGTGAGACTG+TGG - chr3.1:71104166-71104185 MS.gene013819:CDS 45.0%
TGCTCGCTTGGTAAAGATGT+TGG - chr3.1:71106338-71106357 MS.gene013819:intron 45.0%
TTCTAACCACTTTGCTCGCT+TGG - chr3.1:71106326-71106345 MS.gene013819:intron 45.0%
TTTCAAGCGGTGGTTTAGCA+AGG + chr3.1:71103300-71103319 None:intergenic 45.0%
! AGCTTCGATTTGATCAACGC+AGG - chr3.1:71106734-71106753 MS.gene013819:intron 45.0%
! CTGAGGGTGAGCTTTAATTC+TGG - chr3.1:71103175-71103194 MS.gene013819:CDS 45.0%
! GTGAAGAATGTTTCTGCTGG+GGG - chr3.1:71106815-71106834 MS.gene013819:intron 45.0%
! TTACGGGTGATGCATCGATA+AGG - chr3.1:71107076-71107095 MS.gene013819:CDS 45.0%
!! CAGGTAATGGAAAAGTGGGA+CGG - chr3.1:71105636-71105655 MS.gene013819:CDS 45.0%
!! CTGTCTTTAAGGCATCAACC+TGG + chr3.1:71106245-71106264 None:intergenic 45.0%
!! GGAAAGTGGTGCTGTAACAA+TGG - chr3.1:71106086-71106105 MS.gene013819:intron 45.0%
!!! GGTGTTGTTCGTGCTCTTTT+TGG - chr3.1:71107162-71107181 MS.gene013819:CDS 45.0%
!!! TTTTAGAACCACGGCGTTTC+CGG + chr3.1:71105289-71105308 None:intergenic 45.0%
!!! AATTATAATTCATTTTTTTT+TGG - chr3.1:71103396-71103415 MS.gene013819:intron 5.0%
ACAATGGATGGCCCCAGAAA+AGG - chr3.1:71104651-71104670 MS.gene013819:intron 50.0%
ACACCTTACACCAGTCGTTC+TGG - chr3.1:71105682-71105701 MS.gene013819:intron 50.0%
AGTGGAATGGGTGCATACCA+TGG - chr3.1:71107000-71107019 MS.gene013819:CDS 50.0%
CCACAAGCTGCACAAGGAAA+AGG + chr3.1:71106948-71106967 None:intergenic 50.0%
CTCATGTGAAGTCACGCTGA+AGG - chr3.1:71104621-71104640 MS.gene013819:CDS 50.0%
CTGTCCCTTGATCCAGTTGT+TGG - chr3.1:71105252-71105271 MS.gene013819:intron 50.0%
CTTGGAACAGGTGAACAAGC+TGG - chr3.1:71106706-71106725 MS.gene013819:intron 50.0%
GAGGCTGGAGCAATTTCTGA+TGG + chr3.1:71105312-71105331 None:intergenic 50.0%
GCTGCTATAGCTCCAACAAC+TGG + chr3.1:71105267-71105286 None:intergenic 50.0%
GGCATCAACCTGGAAATGAG+AGG + chr3.1:71106235-71106254 None:intergenic 50.0%
GGGTGAAGAGTCACAGAAGA+AGG - chr3.1:71103111-71103130 MS.gene013819:CDS 50.0%
GTGGAATGGGTGCATACCAT+GGG - chr3.1:71107001-71107020 MS.gene013819:CDS 50.0%
GTTGTTGGAGCTATAGCAGC+CGG - chr3.1:71105267-71105286 MS.gene013819:intron 50.0%
TGCTGGCGAACTTATTAGGG+AGG - chr3.1:71105340-71105359 MS.gene013819:intron 50.0%
TGGCTATCCAGGAGAACTGA+AGG + chr3.1:71105812-71105831 None:intergenic 50.0%
TTGGACGACGAGAAGGTTTC+TGG - chr3.1:71106357-71106376 MS.gene013819:intron 50.0%
! ACTTTGCCATTTGGGGGAGT+TGG - chr3.1:71106973-71106992 MS.gene013819:CDS 50.0%
! AGGAAAGAGGTTGGACTAGG+CGG + chr3.1:71104281-71104300 None:intergenic 50.0%
! CCTTTTCCTTGTGCAGCTTG+TGG - chr3.1:71106945-71106964 MS.gene013819:intron 50.0%
! TTGATGAAGGCTCTAGTCGC+CGG - chr3.1:71107129-71107148 MS.gene013819:CDS 50.0%
!! ACCGTGATGATGGGAAGCAA+TGG + chr3.1:71106570-71106589 None:intergenic 50.0%
!! GGAGTTGGTGACAGTGGAAT+GGG - chr3.1:71106988-71107007 MS.gene013819:CDS 50.0%
!! GTTTGGTGCCTCTCATTTCC+AGG - chr3.1:71106224-71106243 MS.gene013819:intron 50.0%
AGTGGGACGGATAGTGATGG+CGG - chr3.1:71105649-71105668 MS.gene013819:CDS 55.0%
CTGTCACCAACTCCCCCAAA+TGG + chr3.1:71106982-71107001 None:intergenic 55.0%
GCTCCAGAACGACTGGTGTA+AGG + chr3.1:71105688-71105707 None:intergenic 55.0%
GGTGGTGTTTGACGGAGAAG+CGG - chr3.1:71103132-71103151 MS.gene013819:CDS 55.0%
! GTCGTTGGTGAAGGAGCTGA+GGG - chr3.1:71103159-71103178 MS.gene013819:CDS 55.0%
!! ACACCAGTCGTTCTGGAGCT+TGG - chr3.1:71105689-71105708 MS.gene013819:intron 55.0%
!! CGACGAGAAGGTTTCTGGCA+AGG - chr3.1:71106362-71106381 MS.gene013819:intron 55.0%
!! GGGAGTTGGTGACAGTGGAA+TGG - chr3.1:71106987-71107006 MS.gene013819:CDS 55.0%
!! TTTGGGGGAGTTGGTGACAG+TGG - chr3.1:71106982-71107001 MS.gene013819:CDS 55.0%
CCTCCAAGCTCCAGAACGAC+TGG + chr3.1:71105695-71105714 None:intergenic 60.0%
CTAGTCGCCGGCGATGTTAC+TGG - chr3.1:71107141-71107160 MS.gene013819:CDS 60.0%
GTTCGCCAGCAGTGAAGACG+AGG + chr3.1:71105331-71105350 None:intergenic 60.0%
TATAGCAGCCGGAAACGCCG+TGG - chr3.1:71105278-71105297 MS.gene013819:intron 60.0%
TCCAGCCTCGTCTTCACTGC+TGG - chr3.1:71105323-71105342 MS.gene013819:intron 60.0%
! CGTCGTTGGTGAAGGAGCTG+AGG - chr3.1:71103158-71103177 MS.gene013819:CDS 60.0%
!! CCAGTCGTTCTGGAGCTTGG+AGG - chr3.1:71105692-71105711 MS.gene013819:intron 60.0%
GCCAGCAGTGAAGACGAGGC+TGG + chr3.1:71105327-71105346 None:intergenic 65.0%
! AGCGGCGTCGTCGTTGGTGA+AGG - chr3.1:71103150-71103169 MS.gene013819:CDS 65.0%
CGGAGAAGCGGCGTCGTCGT+TGG - chr3.1:71103144-71103163 MS.gene013819:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 71103106 71107194 71103106 ID=MS.gene013819
chr3.1 mRNA 71103106 71107194 71103106 ID=MS.gene013819.t1;Parent=MS.gene013819
chr3.1 exon 71106967 71107194 71106967 ID=MS.gene013819.t1.exon1;Parent=MS.gene013819.t1
chr3.1 CDS 71106967 71107194 71106967 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71105628 71105696 71105628 ID=MS.gene013819.t1.exon2;Parent=MS.gene013819.t1
chr3.1 CDS 71105628 71105696 71105628 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71105419 71105515 71105419 ID=MS.gene013819.t1.exon3;Parent=MS.gene013819.t1
chr3.1 CDS 71105419 71105515 71105419 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71104844 71105050 71104844 ID=MS.gene013819.t1.exon4;Parent=MS.gene013819.t1
chr3.1 CDS 71104844 71105050 71104844 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71104546 71104661 71104546 ID=MS.gene013819.t1.exon5;Parent=MS.gene013819.t1
chr3.1 CDS 71104546 71104661 71104546 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71104134 71104238 71104134 ID=MS.gene013819.t1.exon6;Parent=MS.gene013819.t1
chr3.1 CDS 71104134 71104238 71104134 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71103882 71104054 71103882 ID=MS.gene013819.t1.exon7;Parent=MS.gene013819.t1
chr3.1 CDS 71103882 71104054 71103882 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71103713 71103803 71103713 ID=MS.gene013819.t1.exon8;Parent=MS.gene013819.t1
chr3.1 CDS 71103713 71103803 71103713 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71103435 71103584 71103435 ID=MS.gene013819.t1.exon9;Parent=MS.gene013819.t1
chr3.1 CDS 71103435 71103584 71103435 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
chr3.1 exon 71103106 71103339 71103106 ID=MS.gene013819.t1.exon10;Parent=MS.gene013819.t1
chr3.1 CDS 71103106 71103339 71103106 ID=cds.MS.gene013819.t1;Parent=MS.gene013819.t1
Gene Sequence

>MS.gene013819

ATGTCGGGTGAAGAGTCACAGAAGAAGGTGGTGTTTGACGGAGAAGCGGCGTCGTCGTTGGTGAAGGAGCTGAGGGTGAGCTTTAATTCTGGTAAGACACGAAGTTATGAATGGAGAGTATCGCAGGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTCTTCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGGTACCTAATTTCATGTTTAAGTTGCTTTCATATATATATGATTTTTATGGTCTCTCTTTTTAAATTATAATTCATTTTTTTTTGGTACGTGCAATTGAAATCGATAGAAGAGCTAGAGAATCAAGTTTTTTGTTATAACATAAACATCATAAGTTTTCAAGGCTGAGATATTCTTGAGATTTTTCATTTGGAGTCACTATTATGATGGCAACCGTTCCGACGATACAATTACTTTGATTTTTTTTCCTTGTATGACGTCAATATTTTATGTTTTCTTTAATAAAGGAGGAAACATGCTTTTCACTTTTTCCCTTCAAAAAGAAAAATGCTTTTCACCTTCTTTTTTTTTTACGGAACATGCTTTTCACTTGAACGATCACATTAAAGTTACTTCACAATCACGTAAATACAAGTCACGGAAACCAGGATGCTTCTTAAAAGACAGGGACAAGAAGGCGCTAATTTATTCAATGGAGGAATAAAACTTCCTAGGCATAATAAATTGGTTTGGTTTGGTTTTTATGAGAAAATATATCTAAATCAATTTGTTAGGAAATTTGAAAGTTAGTAGATAATTTGACCAATAGTTTTCGATATATAGTGATACTCTTTCTTTCAAATGATCGATCAAAGAATTGTGAGAACTAAAGTGTTCTGGAAAATATAAGTAAAAGGTGTATGTAAAATAAGGGTAAATTACAAGAAAAATAAACTTTGATTGACTGGTGTGTATGTAAAATGTTTTTTACAATGAGTAGTTGGAGATAAAAATGTTAAAGCTAAATCCTAATAGCCATAACTTTGGTTGACACAATATGCGCTCAGCTCAACTTGCGTATTAGTGTGAGACTGTGGCATGCCAATGCCTGCATAGCATTTTCAAGTTACTCGCGAAATTCGCATGGTCATGTGTGAGTGTGCCTCTTGACCGTGCTTAAAATTAGCCGCCTAGTCCAACCTCTTTCCTTTTTACTAAATGGACTCCGTAGCAGTTGAGAAAAACTCGGTTATACTATTCTCAACTACATTGGATTCAACTTAAAATATTTTTGGGTTTAAAAATTTAGTATCCCTTGGTTTCATTTCACTCAATGACACCGCTTTCCATAAATTCAAAATAGAGTAACCGAACATTTTGTAACATTTGTAACTAAACAAACATATTTTGGATGAATACAACTAAGCAATTGACAGGTCAATGTTGCAATCAATACAACTATAATAAAGATAATTTTCCTTCTACTCTTCACTGATGTACTTTGTTTTGCAGATTGGTATGTTTAAAAACTCATGTGAAGTCACGCTGAAGGAATTGAAACAATGGATGGCCCCAGAAAAGGTTTATTTTACCCCAATTTCTTCAGCTGAGAAGGACATTTTTCATTTATATTTCTTATATATAGTTTATTTGAATATTTTTATAACAAAAAGTTCCTTTAATAATATTTCAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTAGTGTTAGTCATCTCTGCTTGGAACTATCCATTTTGTAAGTTGACCTTCAGCATGATTGGTTTGACTTATTTGAGTTTATTTACTTACACCAACATTCTTGAGACTGTTTAGTAGAACTTATATTGAAACAACTTATATGCAAGTCTACAAGCTGTTTTTGACTTATTTCCATAAATTTTTCACGATATCTTATAAAAACAGTTTGACTTTATTTTACCTTTTGTTATACAAATGGCTTATACATAGACACTTATATGATAAATGTGTATGCTATAAACACTTCATCCAGTTGTTTAACAGAACAGAACCTTGTTGGTTGTATTTGAGTTAATATTTTGAGCCTTTAGTTTCTTTAATAATCTATGAAGACTATAATATCACTCTCTCTGTCTGTCTTTTCAGTGCTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCCGGAAACGCCGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCGAACTTATTAGGGAGGTACATGGATAACTCATCTATAAGAGTTGTGGAGGGGGCCGTTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTGTATACAGGTTGGTCTTGTTTATCACCAGTCTGTTTTTCTTGGATGGTTATGAATTGTTATTTTGGTTTTGTCGTGCAATTGGTATGCCATTATTGGTATTGTGAATTTTGAAATCTCATCTCAGATAATCAAATAAATACATCATTTGAACAAAAGATTTCATAGCATAAGTAATTACTTGATTTTCAGGTAATGGAAAAGTGGGACGGATAGTGATGGCGGCTGCTGCAAAACACCTTACACCAGTCGTTCTGGAGCTTGGAGGAAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTATTGATTAAGGCCATGTTTGGATTGACTTATTAAGTTGTTATCAAGTTATTTCCTTCAGTTCTCCTGGATAGCCATTGAAAACAATTTAACTTTATTTTATCTTTTATTATAAAAAAACCTTACACATGAAAGCAATATGACAAATCGACAAGTGTTTATGTTATAAGCGTTTAATTAAATTTTTCATCCAATCAGGTTCTAAGTCTTAGCCTTCTTTTTTATTTTCCAGTCAGTAACTAGTTATATCACTTTGATCTCCTTCCCCTTAACTCATTATTGACTTAAATTAATTTGTGTTTACTAGGTTACAGCTAGACGGATAATTTCAGGAAAGTGGTGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTATGAAATTTTCCCTCGTTGTTAAGAGTTCTAAATATCTGTCTTTGTGTATCTAATGTTTGGTGCCTCTCATTTCCAGGTTGATGCCTTAAAGACAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTATCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGGTAAAGATGTTGGACGACGAGAAGGTTTCTGGCAAGGTTGTTTATGGAGGTGAAAAGGATGAAAACAAACTGTAAGCTCTCCTCTTAATTCAAGTTTAGTAGGTTTTATATACTGCAATGCAATGGATCTTGACACAAGCAAATTACAGGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTAAGAATAAAAGACACAAAGAACTCTTTGAAAAGTACTCAAATATTCATCGATAAGCTTCATTAGCTTGTATCCAATTTAAAACAATGGGGCATCAATTATAATACTTTCTTTCTTGCTTGGAACAGGTGAACAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATGTAATAGTTTGTTTTTTATTTTCTAAAACCTTTCCATGAATGCATATATCCTTATCATGCAATGTTACTTATATCTTTTCCTTTTCCTTGTGCAGCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGACGCTTTTACTCACAAAAAGGCAGTTCTTTACCGTGGTTTTACGGGTGATGCATCGATAAGGTACCCGCCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGCGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA
Protein sequence

>MS.gene013819.t1

MSGEESQKKVVFDGEAASSLVKELRVSFNSGKTRSYEWRVSQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSIRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKTELESFFGKNPIESNDLSRIVSSNHFARLVKMLDDEKVSGKVVYGGEKDENKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDLINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS