Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015131.t1 | XP_003603098.1 | 96.9 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 3.10E-177 | 630.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015131.t1 | Q8GXG1 | 84.3 | 325 | 48 | 1 | 1 | 322 | 1 | 325 | 1.4e-157 | 557.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015131.t1 | G7J705 | 96.9 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 2.3e-177 | 630.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044475 | MS.gene015131 | PPI |
| MS.gene03345 | MS.gene015131 | PPI |
| MS.gene015131 | MS.gene038825 | PPI |
| MS.gene015131 | MS.gene044476 | PPI |
| MS.gene015131 | MS.gene063514 | PPI |
| MS.gene063515 | MS.gene015131 | PPI |
| MS.gene033042 | MS.gene015131 | PPI |
| MS.gene015131 | MS.gene038824 | PPI |
| MS.gene015131 | MS.gene033041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015131.t1 | MTR_3g102370 | 96.894 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 0.0 | 642 |
| MS.gene015131.t1 | MTR_1g094030 | 87.267 | 322 | 39 | 1 | 1 | 322 | 1 | 320 | 0.0 | 580 |
| MS.gene015131.t1 | MTR_1g018760 | 86.769 | 325 | 40 | 2 | 1 | 322 | 1 | 325 | 0.0 | 576 |
| MS.gene015131.t1 | MTR_4g109900 | 59.006 | 322 | 124 | 2 | 3 | 321 | 2 | 318 | 9.31e-131 | 375 |
| MS.gene015131.t1 | MTR_4g109920 | 58.075 | 322 | 128 | 3 | 3 | 321 | 2 | 319 | 4.88e-128 | 369 |
| MS.gene015131.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 8.74e-26 | 105 |
| MS.gene015131.t1 | MTR_8g031580 | 28.990 | 307 | 171 | 7 | 6 | 277 | 23 | 317 | 2.49e-25 | 105 |
| MS.gene015131.t1 | MTR_3g008180 | 28.571 | 252 | 157 | 6 | 67 | 297 | 77 | 326 | 1.37e-16 | 79.7 |
| MS.gene015131.t1 | MTR_8g031580 | 26.201 | 229 | 124 | 6 | 85 | 278 | 1 | 219 | 2.16e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015131.t1 | AT3G16150 | 84.308 | 325 | 48 | 1 | 1 | 322 | 1 | 325 | 0.0 | 566 |
| MS.gene015131.t1 | AT5G08100 | 58.025 | 324 | 121 | 3 | 1 | 321 | 1 | 312 | 5.43e-128 | 368 |
| MS.gene015131.t1 | AT5G08100 | 57.377 | 244 | 90 | 2 | 80 | 321 | 1 | 232 | 3.82e-94 | 279 |
| MS.gene015131.t1 | AT4G00590 | 27.019 | 322 | 174 | 8 | 6 | 282 | 15 | 320 | 2.56e-20 | 91.3 |
| MS.gene015131.t1 | AT5G61540 | 28.947 | 266 | 150 | 9 | 67 | 300 | 80 | 338 | 9.92e-18 | 83.2 |
| MS.gene015131.t1 | AT4G00590 | 26.821 | 302 | 185 | 7 | 6 | 282 | 15 | 305 | 1.28e-16 | 80.1 |
| MS.gene015131.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 6.20e-15 | 73.9 |
| MS.gene015131.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 93 | 300 | 4 | 236 | 6.20e-15 | 73.9 |
Find 91 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATGGAGGTTGGAATT+TGG | 0.172718 | 3.2:+85038148 | MS.gene015131:CDS |
| GTTCATGGAGGTTGGAATTT+GGG | 0.266618 | 3.2:+85038149 | MS.gene015131:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 3.2:+85038106 | MS.gene015131:CDS |
| TCTTATTGCTGTGTCTAATA+AGG | 0.277779 | 3.2:+85038065 | MS.gene015131:CDS |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 3.2:+85038107 | MS.gene015131:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.294879 | 3.2:+85038081 | MS.gene015131:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 3.2:+85038042 | MS.gene015131:CDS |
| GGTTGGGCTATTGCTGTTCA+TGG | 0.339677 | 3.2:+85036791 | MS.gene015131:CDS |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 3.2:+85037817 | MS.gene015131:CDS |
| TGACGGTGTGTTGGAAGATT+AGG | 0.377061 | 3.2:-85036830 | None:intergenic |
| AGAAGATGTGGTGCTGTATC+TGG | 0.390803 | 3.2:+85037275 | MS.gene015131:CDS |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 3.2:-85037531 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 3.2:+85038126 | MS.gene015131:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.407004 | 3.2:+85038082 | MS.gene015131:CDS |
| ATTGCTGTTCATGGCGGCGC+TGG | 0.414973 | 3.2:+85036800 | MS.gene015131:CDS |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 3.2:+85037226 | MS.gene015131:CDS |
| ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 3.2:-85036861 | None:intergenic |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 3.2:+85038096 | MS.gene015131:CDS |
| AAAGGAAGCTAATACAATAC+TGG | 0.421495 | 3.2:+85037559 | MS.gene015131:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 3.2:+85036872 | MS.gene015131:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 3.2:+85037356 | MS.gene015131:CDS |
| CTTATTGCTGTGTCTAATAA+GGG | 0.432612 | 3.2:+85038066 | MS.gene015131:CDS |
| ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 3.2:-85037317 | None:intergenic |
| AACAAAATGAGTGGTCGAAT+TGG | 0.448923 | 3.2:+85037850 | MS.gene015131:CDS |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 3.2:-85037530 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 3.2:+85037212 | MS.gene015131:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 3.2:+85038033 | MS.gene015131:CDS |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 3.2:+85037382 | MS.gene015131:CDS |
| GACGTCGAGTGCGGAAGCAT+TGG | 0.472505 | 3.2:-85036912 | None:intergenic |
| ATTGGTGATTCACCTCTCAT+AGG | 0.473172 | 3.2:+85037868 | MS.gene015131:CDS |
| TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 3.2:+85038134 | MS.gene015131:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 3.2:-85037775 | None:intergenic |
| TAATCTTCCAACACACCGTC+AGG | 0.481716 | 3.2:+85036832 | MS.gene015131:CDS |
| CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 3.2:+85037322 | MS.gene015131:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 3.2:+85037969 | MS.gene015131:CDS |
| GTTCATCAGCCCTCCAGTTG+AGG | 0.494907 | 3.2:-85037830 | None:intergenic |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 3.2:-85037369 | None:intergenic |
| GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 3.2:+85038141 | MS.gene015131:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.502766 | 3.2:+85037874 | MS.gene015131:CDS |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 3.2:+85037730 | MS.gene015131:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 3.2:-85037375 | None:intergenic |
| GCTTCTTCCTGACGGTGTGT+TGG | 0.511337 | 3.2:-85036839 | None:intergenic |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 3.2:+85038127 | MS.gene015131:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 3.2:+85037241 | MS.gene015131:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 3.2:-85036876 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 3.2:+85037375 | MS.gene015131:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 3.2:+85037780 | MS.gene015131:CDS |
| GTTATGGAGTACAAAGGCTA+TGG | 0.546040 | 3.2:+85037985 | MS.gene015131:CDS |
| GTGTGTGGAGTTTCATGCAC+TGG | 0.546331 | 3.2:+85037913 | MS.gene015131:CDS |
| CTGCTGCAACCTCAACTGGA+GGG | 0.550431 | 3.2:+85037821 | MS.gene015131:CDS |
| GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 3.2:-85036847 | None:intergenic |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 3.2:+85037957 | MS.gene015131:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 3.2:+85037521 | MS.gene015131:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 3.2:+85038108 | MS.gene015131:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 3.2:-85037353 | None:intergenic |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 3.2:+85037690 | MS.gene015131:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 3.2:+85037774 | MS.gene015131:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 3.2:+85037937 | MS.gene015131:CDS |
| TGTTCATGGCGGCGCTGGTG+TGG | 0.585081 | 3.2:+85036805 | MS.gene015131:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 3.2:+85037756 | MS.gene015131:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 3.2:-85037352 | None:intergenic |
| CCACGGCCAGAATTGAAAAG+TGG | 0.595287 | 3.2:-85037191 | None:intergenic |
| CTATGGACTTCAACAAGCAG+TGG | 0.595577 | 3.2:+85038002 | MS.gene015131:CDS |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 3.2:+85038034 | MS.gene015131:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 3.2:-85037208 | None:intergenic |
| GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 3.2:+85037820 | MS.gene015131:CDS |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 3.2:+85037217 | MS.gene015131:CDS |
| GGAGTTTCATGCACTGGTGA+AGG | 0.610329 | 3.2:+85037919 | MS.gene015131:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 3.2:+85037487 | MS.gene015131:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 3.2:-85037782 | None:intergenic |
| TGTGTCTAATAAGGGTGAAG+TGG | 0.621047 | 3.2:+85038074 | MS.gene015131:CDS |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 3.2:+85037229 | MS.gene015131:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 3.2:+85037376 | MS.gene015131:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 3.2:-85037351 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 3.2:+85037766 | MS.gene015131:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 3.2:+85037245 | MS.gene015131:CDS |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 3.2:-85037757 | None:intergenic |
| AAGTTCGACGACGTCGAGTG+CGG | 0.645430 | 3.2:-85036921 | None:intergenic |
| CGAGTGCGGAAGCATTGGAT+CGG | 0.648150 | 3.2:-85036907 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 3.2:-85037880 | None:intergenic |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 3.2:-85037364 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 3.2:+85037777 | MS.gene015131:CDS |
| GATGGTAACAAGAGAAGATG+TGG | 0.682088 | 3.2:+85037263 | MS.gene015131:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 3.2:+85037541 | MS.gene015131:CDS |
| TGGGCTATTGCTGTTCATGG+CGG | 0.684758 | 3.2:+85036794 | MS.gene015131:CDS |
| ACTTATGCATGTGATGTGTG+TGG | 0.685580 | 3.2:+85037898 | MS.gene015131:CDS |
| GCTGCAGTTATGGAGTACAA+AGG | 0.689411 | 3.2:+85037979 | MS.gene015131:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 3.2:+85037220 | MS.gene015131:CDS |
| TGTGTGGTGGTGGACAGTCA+AGG | 0.729603 | 3.2:+85037790 | MS.gene015131:CDS |
| GGGCTGATGAACAAAATGAG+TGG | 0.736737 | 3.2:+85037841 | MS.gene015131:CDS |
| AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 3.2:+85038137 | MS.gene015131:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATTATTGTCATTA+TGG | - | chr3.2:85037078-85037097 | None:intergenic | 10.0% |
| !! | AATATTTATAGATCAAAAAT+TGG | - | chr3.2:85037435-85037454 | None:intergenic | 10.0% |
| !! | ATTTATATCATTCATAATCA+TGG | + | chr3.2:85036993-85037012 | MS.gene015131:intron | 15.0% |
| !! | GATTATGAATGATATAAATT+AGG | - | chr3.2:85036992-85037011 | None:intergenic | 15.0% |
| !! | TTTATATCATTCATAATCAT+GGG | + | chr3.2:85036994-85037013 | MS.gene015131:intron | 15.0% |
| !!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3.2:85037456-85037475 | MS.gene015131:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3.2:85036977-85036996 | None:intergenic | 20.0% |
| !! | TGAATGATATAAATTAGGTT+AGG | - | chr3.2:85036987-85037006 | None:intergenic | 20.0% |
| !! | TTATTAATGAATGTGTTTGA+TGG | + | chr3.2:85037656-85037675 | MS.gene015131:intron | 20.0% |
| !!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3.2:85037132-85037151 | MS.gene015131:intron | 20.0% |
| !!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3.2:85037131-85037150 | MS.gene015131:intron | 20.0% |
| ! | AACTATAGATTCGAAAATAC+CGG | - | chr3.2:85037107-85037126 | None:intergenic | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr3.2:85037618-85037637 | MS.gene015131:intron | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr3.2:85038108-85038127 | MS.gene015131:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr3.2:85038107-85038126 | MS.gene015131:CDS | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr3.2:85038106-85038125 | MS.gene015131:CDS | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3.2:85037473-85037492 | MS.gene015131:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3.2:85037472-85037491 | MS.gene015131:intron | 25.0% |
| !!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3.2:85037148-85037167 | MS.gene015131:intron | 25.0% |
| AAAGGAAGCTAATACAATAC+TGG | + | chr3.2:85037559-85037578 | MS.gene015131:CDS | 30.0% | |
| CTTATTGCTGTGTCTAATAA+GGG | + | chr3.2:85038066-85038085 | MS.gene015131:CDS | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr3.2:85037690-85037709 | MS.gene015131:intron | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr3.2:85037660-85037679 | MS.gene015131:intron | 30.0% | |
| TCATTCATAATCATGGGAAA+AGG | + | chr3.2:85037000-85037019 | MS.gene015131:intron | 30.0% | |
| TCTTATTGCTGTGTCTAATA+AGG | + | chr3.2:85038065-85038084 | MS.gene015131:CDS | 30.0% | |
| TTTCAGCATACCAACATTAT+CGG | - | chr3.2:85037534-85037553 | None:intergenic | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3.2:85037309-85037328 | None:intergenic | 30.0% |
| AACAAAATGAGTGGTCGAAT+TGG | + | chr3.2:85037850-85037869 | MS.gene015131:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr3.2:85036879-85036898 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr3.2:85037730-85037749 | MS.gene015131:CDS | 35.0% | |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr3.2:85038096-85038115 | MS.gene015131:CDS | 35.0% | |
| GTTTATTACGGAAGAGACAT+GGG | - | chr3.2:85036965-85036984 | None:intergenic | 35.0% | |
| TTCAGCATACCAACATTATC+GGG | - | chr3.2:85037533-85037552 | None:intergenic | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3.2:85038033-85038052 | MS.gene015131:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3.2:85038034-85038053 | MS.gene015131:CDS | 35.0% |
| !! | ACAGATCCACTTTTCAATTC+TGG | + | chr3.2:85037185-85037204 | MS.gene015131:CDS | 35.0% |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr3.2:85038081-85038100 | MS.gene015131:CDS | 40.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr3.2:85036864-85036883 | None:intergenic | 40.0% | |
| ACTTATGCATGTGATGTGTG+TGG | + | chr3.2:85037898-85037917 | MS.gene015131:CDS | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3.2:85038082-85038101 | MS.gene015131:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr3.2:85037703-85037722 | MS.gene015131:CDS | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr3.2:85036872-85036891 | MS.gene015131:CDS | 40.0% | |
| GATGGTAACAAGAGAAGATG+TGG | + | chr3.2:85037263-85037282 | MS.gene015131:CDS | 40.0% | |
| GGTTTATTACGGAAGAGACA+TGG | - | chr3.2:85036966-85036985 | None:intergenic | 40.0% | |
| GTTATGGAGTACAAAGGCTA+TGG | + | chr3.2:85037985-85038004 | MS.gene015131:CDS | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr3.2:85038149-85038168 | MS.gene015131:CDS | 40.0% | |
| TGTGTCTAATAAGGGTGAAG+TGG | + | chr3.2:85038074-85038093 | MS.gene015131:CDS | 40.0% | |
| TTCATCACTCCCGATAATGT+TGG | + | chr3.2:85037521-85037540 | MS.gene015131:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr3.2:85037306-85037325 | None:intergenic | 40.0% |
| ! | ATTGGTGATTCACCTCTCAT+AGG | + | chr3.2:85037868-85037887 | MS.gene015131:CDS | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3.2:85037382-85037401 | MS.gene015131:CDS | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr3.2:85037229-85037248 | MS.gene015131:CDS | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr3.2:85037372-85037391 | None:intergenic | 45.0% | |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr3.2:85037320-85037339 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr3.2:85037355-85037374 | None:intergenic | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr3.2:85037226-85037245 | MS.gene015131:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr3.2:85037245-85037264 | MS.gene015131:CDS | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr3.2:85037378-85037397 | None:intergenic | 45.0% | |
| CTATGGACTTCAACAAGCAG+TGG | + | chr3.2:85038002-85038021 | MS.gene015131:CDS | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr3.2:85037937-85037956 | MS.gene015131:CDS | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr3.2:85037979-85037998 | MS.gene015131:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr3.2:85037241-85037260 | MS.gene015131:CDS | 45.0% | |
| GGGCTGATGAACAAAATGAG+TGG | + | chr3.2:85037841-85037860 | MS.gene015131:CDS | 45.0% | |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr3.2:85038148-85038167 | MS.gene015131:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr3.2:85037883-85037902 | None:intergenic | 45.0% | |
| TAATCTTCCAACACACCGTC+AGG | + | chr3.2:85036832-85036851 | MS.gene015131:CDS | 45.0% | |
| TGACGGTGTGTTGGAAGATT+AGG | - | chr3.2:85036833-85036852 | None:intergenic | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr3.2:85037217-85037236 | MS.gene015131:CDS | 45.0% | |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr3.2:85037541-85037560 | MS.gene015131:CDS | 45.0% | |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr3.2:85038137-85038156 | MS.gene015131:CDS | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr3.2:85037739-85037758 | None:intergenic | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr3.2:85037709-85037728 | None:intergenic | 45.0% |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr3.2:85037663-85037682 | MS.gene015131:intron | 45.0% |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3.2:85038134-85038153 | MS.gene015131:CDS | 45.0% |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr3.2:85037275-85037294 | MS.gene015131:CDS | 45.0% |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3.2:85037376-85037395 | MS.gene015131:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3.2:85037478-85037497 | MS.gene015131:intron | 45.0% |
| !!! | AATAATATAATTTTTTAATC+CGG | + | chr3.2:85037085-85037104 | MS.gene015131:intron | 5.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3.2:85037969-85037988 | MS.gene015131:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr3.2:85038126-85038145 | MS.gene015131:CDS | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr3.2:85037356-85037375 | MS.gene015131:CDS | 50.0% | |
| CCACGGCCAGAATTGAAAAG+TGG | - | chr3.2:85037194-85037213 | None:intergenic | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr3.2:85038042-85038061 | MS.gene015131:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3.2:85037322-85037341 | MS.gene015131:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr3.2:85037354-85037373 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr3.2:85037356-85037375 | None:intergenic | 50.0% | |
| GATTCACCTCTCATAGGTGC+TGG | + | chr3.2:85037874-85037893 | MS.gene015131:CDS | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr3.2:85037212-85037231 | MS.gene015131:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr3.2:85038127-85038146 | MS.gene015131:CDS | 50.0% | |
| GTGTGTGGAGTTTCATGCAC+TGG | + | chr3.2:85037913-85037932 | MS.gene015131:CDS | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr3.2:85037220-85037239 | MS.gene015131:CDS | 50.0% | |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr3.2:85037211-85037230 | None:intergenic | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3.2:85037375-85037394 | MS.gene015131:CDS | 50.0% |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3.2:85038141-85038160 | MS.gene015131:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3.2:85036850-85036869 | None:intergenic | 50.0% |
| ! | GGAGTTTCATGCACTGGTGA+AGG | + | chr3.2:85037919-85037938 | MS.gene015131:CDS | 50.0% |
| ! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3.2:85036791-85036810 | MS.gene015131:CDS | 50.0% |
| ! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3.2:85036794-85036813 | MS.gene015131:CDS | 50.0% |
| !! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3.2:85037191-85037210 | MS.gene015131:CDS | 50.0% |
| AAGTTCGACGACGTCGAGTG+CGG | - | chr3.2:85036924-85036943 | None:intergenic | 55.0% | |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr3.2:85037821-85037840 | MS.gene015131:CDS | 55.0% | |
| GCTTCTTCCTGACGGTGTGT+TGG | - | chr3.2:85036842-85036861 | None:intergenic | 55.0% | |
| GTTCATCAGCCCTCCAGTTG+AGG | - | chr3.2:85037833-85037852 | None:intergenic | 55.0% | |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr3.2:85037760-85037779 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr3.2:85037957-85037976 | MS.gene015131:CDS | 55.0% | |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3.2:85037817-85037836 | MS.gene015131:CDS | 55.0% |
| !! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3.2:85036910-85036929 | None:intergenic | 55.0% |
| !! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3.2:85037790-85037809 | MS.gene015131:CDS | 55.0% |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3.2:85037487-85037506 | MS.gene015131:intron | 55.0% |
| ACCACACATCCGACGGTCTC+CGG | - | chr3.2:85037778-85037797 | None:intergenic | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr3.2:85037766-85037785 | MS.gene015131:CDS | 60.0% | |
| GCCGATGAGCATTTACGCGC+CGG | + | chr3.2:85037756-85037775 | MS.gene015131:CDS | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr3.2:85037820-85037839 | MS.gene015131:CDS | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr3.2:85037785-85037804 | None:intergenic | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3.2:85036800-85036819 | MS.gene015131:CDS | 60.0% |
| ! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3.2:85036915-85036934 | None:intergenic | 60.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr3.2:85037367-85037386 | None:intergenic | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr3.2:85037780-85037799 | MS.gene015131:CDS | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr3.2:85037777-85037796 | MS.gene015131:CDS | 65.0% | |
| !! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3.2:85036805-85036824 | MS.gene015131:CDS | 65.0% |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr3.2:85037774-85037793 | MS.gene015131:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 85036785 | 85038176 | 85036785 | ID=MS.gene015131 |
| chr3.2 | mRNA | 85036785 | 85038176 | 85036785 | ID=MS.gene015131.t1;Parent=MS.gene015131 |
| chr3.2 | exon | 85036785 | 85036946 | 85036785 | ID=MS.gene015131.t1.exon1;Parent=MS.gene015131.t1 |
| chr3.2 | CDS | 85036785 | 85036946 | 85036785 | ID=cds.MS.gene015131.t1;Parent=MS.gene015131.t1 |
| chr3.2 | exon | 85037170 | 85037403 | 85037170 | ID=MS.gene015131.t1.exon2;Parent=MS.gene015131.t1 |
| chr3.2 | CDS | 85037170 | 85037403 | 85037170 | ID=cds.MS.gene015131.t1;Parent=MS.gene015131.t1 |
| chr3.2 | exon | 85037494 | 85037580 | 85037494 | ID=MS.gene015131.t1.exon3;Parent=MS.gene015131.t1 |
| chr3.2 | CDS | 85037494 | 85037580 | 85037494 | ID=cds.MS.gene015131.t1;Parent=MS.gene015131.t1 |
| chr3.2 | exon | 85037691 | 85038176 | 85037691 | ID=MS.gene015131.t1.exon4;Parent=MS.gene015131.t1 |
| chr3.2 | CDS | 85037691 | 85038176 | 85037691 | ID=cds.MS.gene015131.t1;Parent=MS.gene015131.t1 |
| Gene Sequence |
| Protein sequence |
