Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017025.t1 | XP_003617318.1 | 99 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 9.00E-285 | 988.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017025.t1 | Q9SKX5 | 78.8 | 490 | 102 | 2 | 1 | 488 | 1 | 490 | 1.7e-231 | 803.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017025.t1 | G7KD02 | 99.0 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 6.5e-285 | 988.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene47679 | MS.gene017025 | PPI |
MS.gene061581 | MS.gene017025 | PPI |
MS.gene049679 | MS.gene017025 | PPI |
MS.gene017025 | MS.gene92026 | PPI |
MS.gene46317 | MS.gene017025 | PPI |
MS.gene019144 | MS.gene017025 | PPI |
MS.gene46961 | MS.gene017025 | PPI |
MS.gene05030 | MS.gene017025 | PPI |
MS.gene22232 | MS.gene017025 | PPI |
MS.gene008352 | MS.gene017025 | PPI |
MS.gene038090 | MS.gene017025 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017025.t1 | MTR_5g090300 | 98.975 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 0.0 | 999 |
MS.gene017025.t1 | MTR_3g449620 | 83.469 | 490 | 79 | 1 | 1 | 488 | 1 | 490 | 0.0 | 818 |
MS.gene017025.t1 | MTR_3g064370 | 64.634 | 492 | 170 | 1 | 1 | 488 | 1 | 492 | 0.0 | 658 |
MS.gene017025.t1 | MTR_3g064370 | 65.060 | 415 | 141 | 1 | 78 | 488 | 1 | 415 | 0.0 | 563 |
MS.gene017025.t1 | MTR_3g064370 | 67.609 | 389 | 126 | 0 | 1 | 389 | 1 | 389 | 0.0 | 555 |
MS.gene017025.t1 | MTR_1g023510 | 34.737 | 475 | 260 | 12 | 30 | 454 | 867 | 1341 | 4.59e-67 | 234 |
MS.gene017025.t1 | MTR_3g113170 | 34.298 | 484 | 273 | 12 | 30 | 476 | 883 | 1358 | 7.44e-67 | 234 |
MS.gene017025.t1 | MTR_3g113170 | 34.298 | 484 | 273 | 12 | 30 | 476 | 883 | 1358 | 9.63e-67 | 233 |
MS.gene017025.t1 | MTR_5g087920 | 76.000 | 125 | 30 | 0 | 280 | 404 | 12 | 136 | 6.29e-60 | 193 |
MS.gene017025.t1 | MTR_6g084700 | 34.904 | 467 | 261 | 15 | 29 | 467 | 221 | 672 | 3.89e-55 | 197 |
MS.gene017025.t1 | MTR_3g055090 | 32.373 | 451 | 259 | 13 | 29 | 454 | 160 | 589 | 1.74e-53 | 192 |
MS.gene017025.t1 | MTR_8g464450 | 31.938 | 454 | 257 | 15 | 29 | 454 | 163 | 592 | 1.92e-42 | 161 |
MS.gene017025.t1 | MTR_1g050535 | 30.716 | 433 | 266 | 12 | 44 | 456 | 225 | 643 | 2.46e-41 | 158 |
MS.gene017025.t1 | MTR_1g050535 | 30.716 | 433 | 266 | 12 | 44 | 456 | 225 | 643 | 3.04e-41 | 158 |
MS.gene017025.t1 | MTR_2g039160 | 26.715 | 554 | 287 | 18 | 26 | 472 | 4 | 545 | 2.63e-33 | 132 |
MS.gene017025.t1 | MTR_3g033000 | 28.009 | 432 | 265 | 15 | 53 | 458 | 33 | 444 | 1.39e-30 | 124 |
MS.gene017025.t1 | MTR_3g033000 | 27.586 | 377 | 231 | 14 | 53 | 407 | 33 | 389 | 8.73e-23 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017025.t1 | AT2G43020 | 78.776 | 490 | 102 | 2 | 1 | 488 | 1 | 490 | 0.0 | 788 |
MS.gene017025.t1 | AT3G59050 | 78.367 | 490 | 102 | 3 | 1 | 488 | 1 | 488 | 0.0 | 781 |
MS.gene017025.t1 | AT1G65840 | 62.474 | 477 | 171 | 2 | 20 | 488 | 21 | 497 | 0.0 | 630 |
MS.gene017025.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene017025.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene017025.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene017025.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene017025.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene017025.t1 | AT1G62830 | 34.475 | 467 | 271 | 14 | 28 | 473 | 266 | 718 | 1.27e-54 | 196 |
MS.gene017025.t1 | AT3G10390 | 32.700 | 474 | 264 | 15 | 14 | 456 | 169 | 618 | 5.24e-50 | 183 |
MS.gene017025.t1 | AT3G10390 | 33.333 | 474 | 261 | 16 | 14 | 456 | 169 | 618 | 1.01e-49 | 182 |
MS.gene017025.t1 | AT3G13682 | 33.966 | 474 | 254 | 14 | 17 | 454 | 140 | 590 | 1.09e-49 | 181 |
MS.gene017025.t1 | AT3G10390 | 32.700 | 474 | 264 | 15 | 14 | 456 | 221 | 670 | 1.39e-49 | 182 |
MS.gene017025.t1 | AT3G10390 | 33.333 | 474 | 261 | 16 | 14 | 456 | 221 | 670 | 1.47e-49 | 182 |
MS.gene017025.t1 | AT5G13700 | 28.125 | 448 | 263 | 15 | 53 | 475 | 30 | 443 | 2.54e-34 | 134 |
MS.gene017025.t1 | AT4G29720 | 23.766 | 547 | 290 | 13 | 26 | 465 | 3 | 529 | 3.10e-34 | 135 |
Find 154 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACACTTCAACAACGTATTT+TGG | 0.147701 | 5.1:-71850628 | MS.gene017025:CDS |
AAATGAACCTTTGCGGGAAT+TGG | 0.219044 | 5.1:+71853945 | None:intergenic |
CTAGTTCCCCGTATCTTTCT+AGG | 0.225042 | 5.1:+71849868 | None:intergenic |
CCCTGGTGGTCATGGTCTTA+TGG | 0.250033 | 5.1:-71851006 | MS.gene017025:CDS |
GTAGATAACTTATTCTTTGC+AGG | 0.258142 | 5.1:-71849978 | MS.gene017025:CDS |
ACTTCATGATGCTTCATTTC+AGG | 0.276706 | 5.1:-71853341 | MS.gene017025:intron |
TTGGCCCAATGTGGAGTTCC+TGG | 0.277098 | 5.1:-71850609 | MS.gene017025:CDS |
CAGCTATGCGCTCTTTGATA+TGG | 0.277998 | 5.1:-71851943 | MS.gene017025:CDS |
GGCTCCATTGATTGGGAGGC+TGG | 0.279036 | 5.1:-71852189 | MS.gene017025:CDS |
GTCATAGGCGGTGGCATGGC+TGG | 0.307377 | 5.1:-71853382 | MS.gene017025:CDS |
CTATCATTGCTGTACCTCTT+GGG | 0.307858 | 5.1:-71850751 | MS.gene017025:CDS |
TCAGGGCGACAAAGATAGTT+AGG | 0.311809 | 5.1:-71850832 | MS.gene017025:intron |
TCTTTCCAATCTGGAAGCTT+TGG | 0.318953 | 5.1:+71850698 | None:intergenic |
GCTAATAATGACCTCAGTTC+TGG | 0.323376 | 5.1:+71851650 | None:intergenic |
ATTCACACTGATTACTCATT+TGG | 0.325638 | 5.1:-71852371 | MS.gene017025:CDS |
GCTATCATTGCTGTACCTCT+TGG | 0.347891 | 5.1:-71850752 | MS.gene017025:CDS |
AATCCTCTGGCTCCATTGAT+TGG | 0.348932 | 5.1:-71852197 | MS.gene017025:CDS |
GAAGCTGCCATTGCTGATAT+CGG | 0.349601 | 5.1:-71850677 | MS.gene017025:CDS |
GTGAAGGTGACTACTGAAAA+TGG | 0.357159 | 5.1:-71850797 | MS.gene017025:CDS |
AAGATAGTTAGGGGATATAA+TGG | 0.370197 | 5.1:-71850821 | MS.gene017025:CDS |
GTTCTTGTTTACATGCCTGC+TGG | 0.371256 | 5.1:-71850518 | MS.gene017025:CDS |
TTACATGCCTGCTGGGCGGC+TGG | 0.383621 | 5.1:-71850510 | MS.gene017025:CDS |
ATGGCAGCTTCTTTCCAATC+TGG | 0.384672 | 5.1:+71850689 | None:intergenic |
ATTCTATATCACTGAAATGT+TGG | 0.387439 | 5.1:-71851493 | MS.gene017025:CDS |
GTGGTCATGGTCTTATGGTC+AGG | 0.387478 | 5.1:-71851001 | MS.gene017025:CDS |
AATGAACCTTTGCGGGAATT+GGG | 0.395567 | 5.1:+71853946 | None:intergenic |
TGTCCTATACGATCATGATT+TGG | 0.402825 | 5.1:-71852132 | MS.gene017025:CDS |
TTGGCTAGGGTATGTATAAC+AGG | 0.405023 | 5.1:+71850969 | None:intergenic |
GTAGTTGCTGAGACATCTTA+TGG | 0.410548 | 5.1:-71850584 | MS.gene017025:CDS |
TCACCGTCTGTTATTGTCAT+AGG | 0.417890 | 5.1:-71853397 | MS.gene017025:CDS |
TCTTTGGCCAGCCGCCCAGC+AGG | 0.424805 | 5.1:+71850503 | None:intergenic |
CAAGGGTCTTGACATTCGGC+TGG | 0.431094 | 5.1:-71850949 | MS.gene017025:CDS |
ATCCTCTGGCTCCATTGATT+GGG | 0.431803 | 5.1:-71852196 | MS.gene017025:CDS |
TTGAGCCAAAGCTTCCAGAT+TGG | 0.433940 | 5.1:-71850703 | MS.gene017025:CDS |
AATTGAAAGTGCACGAAGAA+TGG | 0.438137 | 5.1:+71851688 | None:intergenic |
CCTATAGTTATGACGCAGTT+GGG | 0.440336 | 5.1:-71850037 | MS.gene017025:CDS |
AAGCTGCCATTGCTGATATC+GGG | 0.442969 | 5.1:-71850676 | MS.gene017025:CDS |
GAATTGCTCCCTGGTGGTCA+TGG | 0.446683 | 5.1:-71851014 | MS.gene017025:CDS |
TTTCCAAATCATGATCGTAT+AGG | 0.448434 | 5.1:+71852129 | None:intergenic |
CATGATGCACCTAGGTCAAC+AGG | 0.448585 | 5.1:+71852344 | None:intergenic |
TTCTATATCACTGAAATGTT+GGG | 0.449054 | 5.1:-71851492 | MS.gene017025:CDS |
TTCTTGTTTACATGCCTGCT+GGG | 0.453430 | 5.1:-71850517 | MS.gene017025:CDS |
CAAGAGTTGGTTACAGAAGT+TGG | 0.457743 | 5.1:-71851903 | MS.gene017025:CDS |
CAGGGCGACAAAGATAGTTA+GGG | 0.457896 | 5.1:-71850831 | MS.gene017025:CDS |
TGGCCCAATGTGGAGTTCCT+GGG | 0.459578 | 5.1:-71850608 | MS.gene017025:CDS |
GCTCCATTGATTGGGAGGCT+GGG | 0.462828 | 5.1:-71852188 | MS.gene017025:CDS |
TTGACATTCGGCTGGGGCAC+AGG | 0.462919 | 5.1:-71850941 | MS.gene017025:intron |
GCAGGCATGTAAACAAGAAC+AGG | 0.463011 | 5.1:+71850521 | None:intergenic |
AACCCTCTTCCAACTCTGGC+TGG | 0.467559 | 5.1:+71849838 | None:intergenic |
TTACATACAGGGTCTGTTCA+TGG | 0.475124 | 5.1:-71849939 | MS.gene017025:CDS |
TCAGTATCTCGTGTCTCGGT+GGG | 0.475314 | 5.1:-71850084 | MS.gene017025:CDS |
CCCAACTGCGTCATAACTAT+AGG | 0.475903 | 5.1:+71850037 | None:intergenic |
GCAAAGAATAAGTTATCTAC+AGG | 0.484780 | 5.1:+71849981 | None:intergenic |
CAATGGCTGCTGAGGACTGC+AGG | 0.485843 | 5.1:-71849899 | MS.gene017025:CDS |
GTTCATGGTGCATACTCTAC+TGG | 0.488310 | 5.1:-71849924 | MS.gene017025:CDS |
GCAACGAGTGTATTACATAC+AGG | 0.492456 | 5.1:-71849951 | MS.gene017025:CDS |
TTCTGCCACCAAGTCTATCC+CGG | 0.493984 | 5.1:+71852393 | None:intergenic |
AGTCCCAGCCTCCCAATCAA+TGG | 0.497011 | 5.1:+71852185 | None:intergenic |
TGGTCATGGTCTTATGGTCA+GGG | 0.502310 | 5.1:-71851000 | MS.gene017025:CDS |
TAGATAACTTATTCTTTGCA+GGG | 0.507097 | 5.1:-71849977 | MS.gene017025:CDS |
GCCATTGCTGATATCGGGGT+TGG | 0.507133 | 5.1:-71850671 | MS.gene017025:CDS |
TTCGTTGATGCAGGTTGGAG+GGG | 0.509332 | 5.1:-71851580 | MS.gene017025:intron |
CTGTTGACCTAGGTGCATCA+TGG | 0.509864 | 5.1:-71852343 | MS.gene017025:intron |
CTTAATCTTCACAAAGCGGC+AGG | 0.511464 | 5.1:-71850548 | MS.gene017025:CDS |
TAGCCAAGGGTCTTGACATT+CGG | 0.512251 | 5.1:-71850953 | MS.gene017025:CDS |
CTCTGGCTCCATTGATTGGG+AGG | 0.513671 | 5.1:-71852193 | MS.gene017025:CDS |
TCAGTGGTATTTATGCAGAA+TGG | 0.515557 | 5.1:-71851540 | MS.gene017025:CDS |
TGCGTGTCCTAGAAAGATAC+GGG | 0.517425 | 5.1:-71849875 | MS.gene017025:CDS |
TCCTATAGTTATGACGCAGT+TGG | 0.517976 | 5.1:-71850038 | MS.gene017025:CDS |
TCATAGGCGGTGGCATGGCT+GGG | 0.518133 | 5.1:-71853381 | MS.gene017025:CDS |
ACTGAACCCTCTTCCAACTC+TGG | 0.519154 | 5.1:+71849834 | None:intergenic |
ACCATAAGACCATGACCACC+AGG | 0.519331 | 5.1:+71851005 | None:intergenic |
TGGTCTGTATGAGAGGTTGC+GGG | 0.523316 | 5.1:-71850006 | MS.gene017025:CDS |
CAGCCGAATGTCAAGACCCT+TGG | 0.525666 | 5.1:+71850950 | None:intergenic |
ATGCGTGTCCTAGAAAGATA+CGG | 0.527553 | 5.1:-71849876 | MS.gene017025:CDS |
ACTCCCAGGAACTCCACATT+GGG | 0.528892 | 5.1:+71850605 | None:intergenic |
TCTGTTATTGTCATAGGCGG+TGG | 0.531300 | 5.1:-71853391 | MS.gene017025:CDS |
ATGGTCTGTATGAGAGGTTG+CGG | 0.532017 | 5.1:-71850007 | MS.gene017025:CDS |
ATTCGTTGATGCAGGTTGGA+GGG | 0.533554 | 5.1:-71851581 | MS.gene017025:intron |
CAAATACGAGATATCAGAAG+TGG | 0.533727 | 5.1:+71849807 | None:intergenic |
CCTTCCCGATGCTTCTTCAC+CGG | 0.535712 | 5.1:-71850420 | MS.gene017025:intron |
GAATCAAGTTCCACAAGAGT+TGG | 0.536968 | 5.1:-71851916 | MS.gene017025:CDS |
CTATGCGCTCTTTGATATGG+AGG | 0.537548 | 5.1:-71851940 | MS.gene017025:CDS |
TGAAGGTGACTACTGAAAAT+GGG | 0.540274 | 5.1:-71850796 | MS.gene017025:CDS |
AAGGGTCTTGACATTCGGCT+GGG | 0.542089 | 5.1:-71850948 | MS.gene017025:CDS |
ATAACAGACGGTGACCTTCG+AGG | 0.542275 | 5.1:+71853406 | None:intergenic |
AATTCGTTGATGCAGGTTGG+AGG | 0.542488 | 5.1:-71851582 | MS.gene017025:intron |
ATTTATGCAGAATGGAGGGC+TGG | 0.545277 | 5.1:-71851532 | MS.gene017025:CDS |
AGATATATTCCAGCCAGAGT+TGG | 0.546397 | 5.1:-71849847 | MS.gene017025:CDS |
TTAGAATCCCGGGATAGACT+TGG | 0.547928 | 5.1:-71852401 | MS.gene017025:CDS |
AGGGTCTTGACATTCGGCTG+GGG | 0.550051 | 5.1:-71850947 | MS.gene017025:CDS |
TACTGGAACAATGGCTGCTG+AGG | 0.550086 | 5.1:-71849907 | MS.gene017025:CDS |
TTCAGTATCTCGTGTCTCGG+TGG | 0.557308 | 5.1:-71850085 | MS.gene017025:CDS |
TGCATACTCTACTGGAACAA+TGG | 0.558563 | 5.1:-71849916 | MS.gene017025:CDS |
GAATGTCAAGACCCTTGGCT+AGG | 0.558837 | 5.1:+71850955 | None:intergenic |
GAATCCCGGGATAGACTTGG+TGG | 0.558858 | 5.1:-71852398 | MS.gene017025:CDS |
GTTGGAGGGGCTTTCACACA+AGG | 0.559617 | 5.1:-71851567 | MS.gene017025:CDS |
AGTTACCGGTGAAGAAGCAT+CGG | 0.560061 | 5.1:+71850415 | None:intergenic |
TACTCCCAGGAACTCCACAT+TGG | 0.560675 | 5.1:+71850604 | None:intergenic |
GCAGACAGATAATGTACGAC+AGG | 0.565366 | 5.1:-71851729 | MS.gene017025:intron |
CAGAGTTATCCTCACAAGTA+CGG | 0.566480 | 5.1:+71852153 | None:intergenic |
TCCTCACAAGTACGGTAAAG+AGG | 0.571437 | 5.1:+71852161 | None:intergenic |
AATGTCAAGACCCTTGGCTA+GGG | 0.571742 | 5.1:+71850956 | None:intergenic |
TTTCACACAAGGTGCTTCAG+TGG | 0.575044 | 5.1:-71851556 | MS.gene017025:CDS |
TAGGGGATATAATGGAGTGA+AGG | 0.576412 | 5.1:-71850813 | MS.gene017025:CDS |
TGAAGCATCATGAAGTGCAC+GGG | 0.579978 | 5.1:+71853348 | None:intergenic |
ATTCCAGCCAGAGTTGGAAG+AGG | 0.581520 | 5.1:-71849841 | MS.gene017025:CDS |
AACCGCATGGTCTGTATGAG+AGG | 0.584210 | 5.1:-71850013 | MS.gene017025:CDS |
CTAGGGTATGTATAACAGGC+AGG | 0.584240 | 5.1:+71850973 | None:intergenic |
ATGTCTCAGCAACTACTCCC+AGG | 0.584539 | 5.1:+71850591 | None:intergenic |
ACCTCTTTACCGTACTTGTG+AGG | 0.587430 | 5.1:-71852162 | MS.gene017025:CDS |
GTGGTATTTATGCAGAATGG+AGG | 0.590217 | 5.1:-71851537 | MS.gene017025:CDS |
ATGAAGCATCATGAAGTGCA+CGG | 0.590616 | 5.1:+71853347 | None:intergenic |
TATGCGCTCTTTGATATGGA+GGG | 0.591981 | 5.1:-71851939 | MS.gene017025:CDS |
ATCACTGAAATGTTGGGACC+AGG | 0.592003 | 5.1:-71851486 | MS.gene017025:intron |
GACGCAGTTGGGAAACCGCA+TGG | 0.594696 | 5.1:-71850026 | MS.gene017025:CDS |
ATGTTGATCAGCAGCCTCGA+AGG | 0.595305 | 5.1:-71853420 | MS.gene017025:CDS |
TCTGCCACCAAGTCTATCCC+GGG | 0.596007 | 5.1:+71852394 | None:intergenic |
AGGGCGACAAAGATAGTTAG+GGG | 0.596239 | 5.1:-71850830 | MS.gene017025:CDS |
TGTTATACATACCCTAGCCA+AGG | 0.597299 | 5.1:-71850967 | MS.gene017025:CDS |
ACTAATCCCAATTCCCGCAA+AGG | 0.600311 | 5.1:-71853952 | MS.gene017025:intron |
TATACGATCATGATTTGGAA+AGG | 0.602711 | 5.1:-71852127 | MS.gene017025:intron |
GTTACCGGTGAAGAAGCATC+GGG | 0.603982 | 5.1:+71850416 | None:intergenic |
CTCCCAATCAATGGAGCCAG+AGG | 0.605374 | 5.1:+71852194 | None:intergenic |
TATCATTGCTGTACCTCTTG+GGG | 0.605759 | 5.1:-71850750 | MS.gene017025:CDS |
GGTACAGATATTAATTCACT+AGG | 0.607199 | 5.1:-71850062 | MS.gene017025:CDS |
CAACGAGTGTATTACATACA+GGG | 0.607621 | 5.1:-71849950 | MS.gene017025:CDS |
TTACAGGAAGAATTGCTCCC+TGG | 0.609122 | 5.1:-71851023 | MS.gene017025:intron |
AGATTCAGTATCTCGTGTCT+CGG | 0.611152 | 5.1:-71850088 | MS.gene017025:CDS |
TGATTATGATTCAGGTTGCA+TGG | 0.611159 | 5.1:-71852233 | MS.gene017025:intron |
TTCCAGCCAGAGTTGGAAGA+GGG | 0.614724 | 5.1:-71849840 | MS.gene017025:CDS |
AGTTTGCAATGAGAATCCTC+TGG | 0.615479 | 5.1:-71852210 | MS.gene017025:CDS |
TGGTATTTATGCAGAATGGA+GGG | 0.621034 | 5.1:-71851536 | MS.gene017025:CDS |
TATTGTCATAGGCGGTGGCA+TGG | 0.626229 | 5.1:-71853386 | MS.gene017025:CDS |
TCCAACCCCGATATCAGCAA+TGG | 0.632597 | 5.1:+71850670 | None:intergenic |
GGTCATGGTCTTATGGTCAG+GGG | 0.639940 | 5.1:-71850999 | MS.gene017025:CDS |
AGCTGCCATTGCTGATATCG+GGG | 0.641150 | 5.1:-71850675 | MS.gene017025:CDS |
CCGTCTGTTATTGTCATAGG+CGG | 0.645271 | 5.1:-71853394 | MS.gene017025:CDS |
ACTTCTGTAACCAACTCTTG+TGG | 0.651673 | 5.1:+71851906 | None:intergenic |
CCGGTGAAGAAGCATCGGGA+AGG | 0.655055 | 5.1:+71850420 | None:intergenic |
ATCTTTACCATGATGCACCT+AGG | 0.655995 | 5.1:+71852336 | None:intergenic |
CAGTATCTCGTGTCTCGGTG+GGG | 0.656943 | 5.1:-71850083 | MS.gene017025:CDS |
TTGAAAGAAAGCCAGAACTG+AGG | 0.657435 | 5.1:-71851661 | MS.gene017025:intron |
ATGCGCTCTTTGATATGGAG+GGG | 0.658060 | 5.1:-71851938 | MS.gene017025:CDS |
TTTGCTTTCAGTACCCCAAG+AGG | 0.665152 | 5.1:+71850737 | None:intergenic |
CTTTCTTAATCTTCACAAAG+CGG | 0.672988 | 5.1:-71850552 | MS.gene017025:CDS |
CAGGAAGAATTGCTCCCTGG+TGG | 0.673379 | 5.1:-71851020 | MS.gene017025:CDS |
GTTATACATACCCTAGCCAA+GGG | 0.684397 | 5.1:-71850966 | MS.gene017025:CDS |
AGATAACTTATTCTTTGCAG+GGG | 0.691736 | 5.1:-71849976 | MS.gene017025:CDS |
CCATAAGACCATGACCACCA+GGG | 0.693042 | 5.1:+71851006 | None:intergenic |
CCGCCTATGACAATAACAGA+CGG | 0.695318 | 5.1:+71853394 | None:intergenic |
TTGTTTACATGCCTGCTGGG+CGG | 0.710778 | 5.1:-71850514 | MS.gene017025:CDS |
AACCTCTCATACAGACCATG+CGG | 0.717356 | 5.1:+71850011 | None:intergenic |
GCGTGTCCTAGAAAGATACG+GGG | 0.777230 | 5.1:-71849874 | MS.gene017025:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGAAATTTAATCAATT+AGG | + | chr5.1:71850050-71850069 | None:intergenic | 10.0% |
!! | ATATTATAATATTTGATGTA+AGG | - | chr5.1:71852603-71852622 | MS.gene017025:intron | 10.0% |
!! | TATTATAATATTTGATGTAA+GGG | - | chr5.1:71852604-71852623 | MS.gene017025:intron | 10.0% |
!!! | TTTTATATATTGGTAAAAAA+CGG | - | chr5.1:71850087-71850106 | MS.gene017025:CDS | 10.0% |
!! | AAAAAAAGTGATAAATCATT+TGG | - | chr5.1:71850131-71850150 | MS.gene017025:intron | 15.0% |
!! | AAAAAAGTGATAAATCATTT+GGG | - | chr5.1:71850132-71850151 | MS.gene017025:intron | 15.0% |
!! | AATGGTATATTATTTGATAT+GGG | - | chr5.1:71851780-71851799 | MS.gene017025:intron | 15.0% |
!! | AGGAAAAACAAAATAATTAA+AGG | + | chr5.1:71851254-71851273 | None:intergenic | 15.0% |
!! | TTTATATATTGGTAAAAAAC+GGG | - | chr5.1:71850088-71850107 | MS.gene017025:CDS | 15.0% |
!!! | AATTTCTAATTTTTATGATC+AGG | - | chr5.1:71850059-71850078 | MS.gene017025:CDS | 15.0% |
!!! | ATGCATTTTTTGTTATTATT+TGG | - | chr5.1:71851675-71851694 | MS.gene017025:CDS | 15.0% |
!!! | ATTTAACTTGTTTTTTACAA+TGG | - | chr5.1:71853401-71853420 | MS.gene017025:CDS | 15.0% |
!!! | ATTTCTAATTTTTATGATCA+GGG | - | chr5.1:71850060-71850079 | MS.gene017025:CDS | 15.0% |
!!! | TTACATAAATATTTTTTACG+CGG | - | chr5.1:71852401-71852420 | MS.gene017025:CDS | 15.0% |
!!! | TTTAAAACTATTATAGTTAC+CGG | + | chr5.1:71853378-71853397 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTGTTCTGAATT+TGG | - | chr5.1:71849904-71849923 | MS.gene017025:CDS | 15.0% |
!! | AACAAAATAATTAAAGGAGA+TGG | + | chr5.1:71851248-71851267 | None:intergenic | 20.0% |
!! | AATAATTCAAAGAGTTGTAT+TGG | - | chr5.1:71850186-71850205 | MS.gene017025:intron | 20.0% |
!! | AATATCCTGATCATAAAAAT+TGG | + | chr5.1:71850016-71850035 | None:intergenic | 20.0% |
!! | AATTGGAAATTTGATCAATT+AGG | + | chr5.1:71849999-71850018 | None:intergenic | 20.0% |
!! | AGATCTAAAGATTAATGTAT+TGG | - | chr5.1:71850637-71850656 | MS.gene017025:CDS | 20.0% |
!! | ATTTGATTAGATTATAGATC+TGG | - | chr5.1:71849936-71849955 | MS.gene017025:CDS | 20.0% |
!! | CCAAAATAAAAAATGAAAAG+AGG | + | chr5.1:71849866-71849885 | None:intergenic | 20.0% |
!! | GAATGGTATATTATTTGATA+TGG | - | chr5.1:71851779-71851798 | MS.gene017025:intron | 20.0% |
!! | TCTAATAAAAAAGATCAACA+AGG | + | chr5.1:71852471-71852490 | None:intergenic | 20.0% |
!! | TTTATTAGACACATTATTGA+AGG | - | chr5.1:71852482-71852501 | MS.gene017025:intron | 20.0% |
!!! | AATTTCCAATTTTTATGATC+AGG | - | chr5.1:71850008-71850027 | MS.gene017025:CDS | 20.0% |
!!! | AGTTCTTATTTATACACTAT+TGG | - | chr5.1:71852524-71852543 | MS.gene017025:intron | 20.0% |
!!! | ATTTGTTTGAAGTTTTGTTT+TGG | - | chr5.1:71852863-71852882 | MS.gene017025:intron | 20.0% |
!!! | CCTCTTTTCATTTTTTATTT+TGG | - | chr5.1:71849863-71849882 | MS.gene017025:CDS | 20.0% |
!!! | TCAGGGTATTTTTTATATAT+TGG | - | chr5.1:71850077-71850096 | MS.gene017025:CDS | 20.0% |
!!! | TTGAGTTTTGATAAAATGAA+TGG | + | chr5.1:71852175-71852194 | None:intergenic | 20.0% |
!!! | TTTTATTTTAGCATTGAAAG+TGG | - | chr5.1:71851519-71851538 | MS.gene017025:CDS | 20.0% |
! | AATGTTTAAATGAGAAGAAG+AGG | + | chr5.1:71851274-71851293 | None:intergenic | 25.0% |
! | ACAACTCTCAATACAAATAA+AGG | + | chr5.1:71851319-71851338 | None:intergenic | 25.0% |
! | AGTTAAAAAATGAACCTTTG+CGG | + | chr5.1:71849841-71849860 | None:intergenic | 25.0% |
! | ATAATATCCTCAATAAAAGC+CGG | + | chr5.1:71852590-71852609 | None:intergenic | 25.0% |
! | ATTCTATATCACTGAAATGT+TGG | - | chr5.1:71852283-71852302 | MS.gene017025:intron | 25.0% |
! | CTAATTGCAATCTATTTCAT+TGG | - | chr5.1:71850966-71850985 | MS.gene017025:CDS | 25.0% |
! | TAAACTTAAGTTACATGTAC+AGG | + | chr5.1:71850943-71850962 | None:intergenic | 25.0% |
! | TACAATGGAATAAAAGTAAG+AGG | - | chr5.1:71853416-71853435 | MS.gene017025:CDS | 25.0% |
! | TTCTATATCACTGAAATGTT+GGG | - | chr5.1:71852284-71852303 | MS.gene017025:intron | 25.0% |
! | TTGGATCGAAATATAGTTTA+TGG | - | chr5.1:71850656-71850675 | MS.gene017025:CDS | 25.0% |
!! | AAAACCATTTTATGCTATCT+TGG | - | chr5.1:71851068-71851087 | MS.gene017025:intron | 25.0% |
!! | AAACCATTTTATGCTATCTT+GGG | - | chr5.1:71851069-71851088 | MS.gene017025:intron | 25.0% |
!! | GCTTTGTTAGAGTTTAAAAT+TGG | - | chr5.1:71851112-71851131 | MS.gene017025:intron | 25.0% |
!!! | AGTTCATTACTTTTTTGTTC+AGG | - | chr5.1:71851344-71851363 | MS.gene017025:intron | 25.0% |
!!! | AGTTTTGATAAAATGAATGG+TGG | + | chr5.1:71852172-71852191 | None:intergenic | 25.0% |
!!! | ATTTGAAATGATTTTGCAAG+AGG | - | chr5.1:71851902-71851921 | MS.gene017025:CDS | 25.0% |
!!! | CATTTTAGAAGATAAAGTGT+GGG | - | chr5.1:71853485-71853504 | MS.gene017025:intron | 25.0% |
!!! | GTGTTTTTTTTGACATGTTT+TGG | - | chr5.1:71850253-71850272 | MS.gene017025:intron | 25.0% |
!!! | TAGATTATAGATCTGGTTTT+AGG | - | chr5.1:71849943-71849962 | MS.gene017025:CDS | 25.0% |
!!! | TTGTTGTATTTTGGTTCAAT+AGG | - | chr5.1:71851018-71851037 | MS.gene017025:CDS | 25.0% |
!!! | TTTGATGATACCTATTTTCA+GGG | - | chr5.1:71852927-71852946 | MS.gene017025:intron | 25.0% |
AAGACCTAGATAAACTATGA+GGG | - | chr5.1:71850601-71850620 | MS.gene017025:CDS | 30.0% | |
AAGATAGTTAGGGGATATAA+TGG | - | chr5.1:71852955-71852974 | MS.gene017025:intron | 30.0% | |
ATTGGTAAAAAACGGGAATA+GGG | - | chr5.1:71850095-71850114 | MS.gene017025:intron | 30.0% | |
CTTTCTTAATCTTCACAAAG+CGG | - | chr5.1:71853224-71853243 | MS.gene017025:intron | 30.0% | |
GGTACAGATATTAATTCACT+AGG | - | chr5.1:71853714-71853733 | MS.gene017025:intron | 30.0% | |
GTTAAAAAATGAACCTTTGC+GGG | + | chr5.1:71849840-71849859 | None:intergenic | 30.0% | |
TAACCCAAGATAGCATAAAA+TGG | + | chr5.1:71851075-71851094 | None:intergenic | 30.0% | |
TATTGGTAAAAAACGGGAAT+AGG | - | chr5.1:71850094-71850113 | MS.gene017025:intron | 30.0% | |
TGAAGGACACAATTATTAAG+TGG | - | chr5.1:71852499-71852518 | MS.gene017025:intron | 30.0% | |
TGTGAGTATATGAAACCATA+CGG | + | chr5.1:71852657-71852676 | None:intergenic | 30.0% | |
TTTCCAAATCATGATCGTAT+AGG | + | chr5.1:71851650-71851669 | None:intergenic | 30.0% | |
! | AGACATTTTCTCAATGTCTT+TGG | + | chr5.1:71853292-71853311 | None:intergenic | 30.0% |
! | ATTCACACTGATTACTCATT+TGG | - | chr5.1:71851405-71851424 | MS.gene017025:intron | 30.0% |
! | TAATGATATGCCATTTGTAC+CGG | - | chr5.1:71852568-71852587 | MS.gene017025:intron | 30.0% |
! | TACACTTCAACAACGTATTT+TGG | - | chr5.1:71853148-71853167 | MS.gene017025:intron | 30.0% |
! | TATACGATCATGATTTGGAA+AGG | - | chr5.1:71851649-71851668 | MS.gene017025:intron | 30.0% |
! | TGATTGCGATTGTTGTATTT+TGG | - | chr5.1:71851009-71851028 | MS.gene017025:CDS | 30.0% |
!! | CTTTGATGATACCTATTTTC+AGG | - | chr5.1:71852926-71852945 | MS.gene017025:intron | 30.0% |
!! | GCATTTTAGAAGATAAAGTG+TGG | - | chr5.1:71853484-71853503 | MS.gene017025:intron | 30.0% |
!!! | ACACTATTGGTTTGAGTTTT+AGG | - | chr5.1:71852537-71852556 | MS.gene017025:intron | 30.0% |
!!! | CATAAATATTTTTTACGCGG+TGG | - | chr5.1:71852404-71852423 | MS.gene017025:CDS | 30.0% |
AAACCGTGTTCAAGATGTTT+GGG | - | chr5.1:71852323-71852342 | MS.gene017025:intron | 35.0% | |
AAACTCAAATTCGTTGATGC+AGG | - | chr5.1:71852187-71852206 | MS.gene017025:CDS | 35.0% | |
AAAGTGGCTGATTATGATTC+AGG | - | chr5.1:71851535-71851554 | MS.gene017025:CDS | 35.0% | |
ACAAGGACAAAGAACTGAAA+TGG | + | chr5.1:71852454-71852473 | None:intergenic | 35.0% | |
ACTTCATGATGCTTCATTTC+AGG | - | chr5.1:71850435-71850454 | MS.gene017025:CDS | 35.0% | |
ATATGTCACCATGTGGAAAT+GGG | + | chr5.1:71851191-71851210 | None:intergenic | 35.0% | |
ATCATCAAAGCCAGTTAGTT+TGG | + | chr5.1:71852916-71852935 | None:intergenic | 35.0% | |
ATTCTGTAGCCTACAAAACA+TGG | + | chr5.1:71853598-71853617 | None:intergenic | 35.0% | |
CAAATACGAGATATCAGAAG+TGG | + | chr5.1:71853972-71853991 | None:intergenic | 35.0% | |
CAACGAGTGTATTACATACA+GGG | - | chr5.1:71853826-71853845 | MS.gene017025:intron | 35.0% | |
GAAGACCTAGATAAACTATG+AGG | - | chr5.1:71850600-71850619 | MS.gene017025:CDS | 35.0% | |
GAGATACTGAATCTGCATAA+AGG | + | chr5.1:71853682-71853701 | None:intergenic | 35.0% | |
GATTAATAAGTGACTCCGTA+TGG | - | chr5.1:71852639-71852658 | MS.gene017025:intron | 35.0% | |
GCTATGCACAGAAACATAAA+TGG | + | chr5.1:71853635-71853654 | None:intergenic | 35.0% | |
GTAACCAGGTATATAGAGAA+GGG | + | chr5.1:71852737-71852756 | None:intergenic | 35.0% | |
GTTTCCCTCATAGTTTATCT+AGG | + | chr5.1:71850608-71850627 | None:intergenic | 35.0% | |
GTTTGGTAAACCAACAAAAC+AGG | + | chr5.1:71852899-71852918 | None:intergenic | 35.0% | |
TAAAAGTAAGAGGTTCAGAG+TGG | - | chr5.1:71853426-71853445 | MS.gene017025:CDS | 35.0% | |
TCAAACCAAACCATACCTTT+GGG | - | chr5.1:71851158-71851177 | MS.gene017025:intron | 35.0% | |
TCAATAAAAGCCGGTACAAA+TGG | + | chr5.1:71852581-71852600 | None:intergenic | 35.0% | |
TCAGTGGTATTTATGCAGAA+TGG | - | chr5.1:71852236-71852255 | MS.gene017025:intron | 35.0% | |
TCGACACTGGTAATAATTTG+AGG | - | chr5.1:71850534-71850553 | MS.gene017025:CDS | 35.0% | |
TGAAGGTGACTACTGAAAAT+GGG | - | chr5.1:71852980-71852999 | MS.gene017025:intron | 35.0% | |
TGGTATTTATGCAGAATGGA+GGG | - | chr5.1:71852240-71852259 | MS.gene017025:intron | 35.0% | |
TGTAACCAGGTATATAGAGA+AGG | + | chr5.1:71852738-71852757 | None:intergenic | 35.0% | |
TGTCCTATACGATCATGATT+TGG | - | chr5.1:71851644-71851663 | MS.gene017025:intron | 35.0% | |
TGTTGTTGTACTGTCTATGT+AGG | - | chr5.1:71850319-71850338 | MS.gene017025:intron | 35.0% | |
TTCTCTATATACCTGGTTAC+AGG | - | chr5.1:71852737-71852756 | MS.gene017025:intron | 35.0% | |
TTGGGTTATACAACTTCACT+TGG | - | chr5.1:71851087-71851106 | MS.gene017025:intron | 35.0% | |
! | AAGTCTTTGTCCTGTTTTGT+TGG | - | chr5.1:71852886-71852905 | MS.gene017025:intron | 35.0% |
! | AATTGAAAGTGCACGAAGAA+TGG | + | chr5.1:71852091-71852110 | None:intergenic | 35.0% |
! | ATGTGTACTGTCTAGTTTAG+AGG | - | chr5.1:71853556-71853575 | MS.gene017025:intron | 35.0% |
! | TCTCTTGAACCATGTTTTGT+AGG | - | chr5.1:71853586-71853605 | MS.gene017025:intron | 35.0% |
! | TGTTTCTGTGCATAGCTATA+TGG | - | chr5.1:71853639-71853658 | MS.gene017025:intron | 35.0% |
!! | TGATTATGATTCAGGTTGCA+TGG | - | chr5.1:71851543-71851562 | MS.gene017025:CDS | 35.0% |
!! | TGTTGGTTTACCAAACTAAC+TGG | - | chr5.1:71852903-71852922 | MS.gene017025:intron | 35.0% |
!! | TTGGTTCCTCTAAAGTGATA+GGG | - | chr5.1:71853451-71853470 | MS.gene017025:intron | 35.0% |
!! | TTTGGTTCCTCTAAAGTGAT+AGG | - | chr5.1:71853450-71853469 | MS.gene017025:intron | 35.0% |
!!! | ATTTGTACCGGCTTTTATTG+AGG | - | chr5.1:71852580-71852599 | MS.gene017025:intron | 35.0% |
AAATGAACCTTTGCGGGAAT+TGG | + | chr5.1:71849834-71849853 | None:intergenic | 40.0% | |
AAATGTTGGGACCAGGTAAT+TGG | - | chr5.1:71852297-71852316 | MS.gene017025:intron | 40.0% | |
AACCCCAAACATCTTGAACA+CGG | + | chr5.1:71852329-71852348 | None:intergenic | 40.0% | |
AACCGTGTTCAAGATGTTTG+GGG | - | chr5.1:71852324-71852343 | MS.gene017025:intron | 40.0% | |
AATGAACCTTTGCGGGAATT+GGG | + | chr5.1:71849833-71849852 | None:intergenic | 40.0% | |
ACACTGACACTTCAGATTGA+AGG | + | chr5.1:71850764-71850783 | None:intergenic | 40.0% | |
ACTTCTGTAACCAACTCTTG+TGG | + | chr5.1:71851873-71851892 | None:intergenic | 40.0% | |
AGATATATTCCAGCCAGAGT+TGG | - | chr5.1:71853929-71853948 | MS.gene017025:intron | 40.0% | |
AGATTCAGTATCTCGTGTCT+CGG | - | chr5.1:71853688-71853707 | MS.gene017025:intron | 40.0% | |
AGTTTGCAATGAGAATCCTC+TGG | - | chr5.1:71851566-71851585 | MS.gene017025:CDS | 40.0% | |
ATACCATTCAAGATGACCAG+AGG | + | chr5.1:71851768-71851787 | None:intergenic | 40.0% | |
ATCTTTACCATGATGCACCT+AGG | + | chr5.1:71851443-71851462 | None:intergenic | 40.0% | |
ATCTTTGTCGCCCTGAAAAT+AGG | + | chr5.1:71852940-71852959 | None:intergenic | 40.0% | |
ATGCGTGTCCTAGAAAGATA+CGG | - | chr5.1:71853900-71853919 | MS.gene017025:intron | 40.0% | |
ATGGATAGTCGTATCACTAG+AGG | - | chr5.1:71850572-71850591 | MS.gene017025:CDS | 40.0% | |
CAGAGTTATCCTCACAAGTA+CGG | + | chr5.1:71851626-71851645 | None:intergenic | 40.0% | |
CATATGTCACCATGTGGAAA+TGG | + | chr5.1:71851192-71851211 | None:intergenic | 40.0% | |
CCTATAGTTATGACGCAGTT+GGG | - | chr5.1:71853739-71853758 | MS.gene017025:intron | 40.0% | |
CGTGTGAGTATCATTACTCT+TGG | + | chr5.1:71850514-71850533 | None:intergenic | 40.0% | |
CTAAAGTGATAGGGTCTGAA+GGG | - | chr5.1:71853460-71853479 | MS.gene017025:intron | 40.0% | |
CTATCATTGCTGTACCTCTT+GGG | - | chr5.1:71853025-71853044 | MS.gene017025:intron | 40.0% | |
CTTCAGATTGAAGGTTTGTC+TGG | + | chr5.1:71850755-71850774 | None:intergenic | 40.0% | |
GAAACCGTGTTCAAGATGTT+TGG | - | chr5.1:71852322-71852341 | MS.gene017025:intron | 40.0% | |
GAAATGGGAATTTGTCCCAA+AGG | + | chr5.1:71851176-71851195 | None:intergenic | 40.0% | |
GAATCAAGTTCCACAAGAGT+TGG | - | chr5.1:71851860-71851879 | MS.gene017025:intron | 40.0% | |
GAATGCTTCAATCTTTCCTC+TGG | - | chr5.1:71851749-71851768 | MS.gene017025:intron | 40.0% | |
GACAAATTCCCATTTCCACA+TGG | - | chr5.1:71851180-71851199 | MS.gene017025:intron | 40.0% | |
GAGGAGAGTAGATAAGATGA+TGG | - | chr5.1:71850553-71850572 | MS.gene017025:CDS | 40.0% | |
GCAACGAGTGTATTACATAC+AGG | - | chr5.1:71853825-71853844 | MS.gene017025:intron | 40.0% | |
GCTAATAATGACCTCAGTTC+TGG | + | chr5.1:71852129-71852148 | None:intergenic | 40.0% | |
GTAGTTGCTGAGACATCTTA+TGG | - | chr5.1:71853192-71853211 | MS.gene017025:intron | 40.0% | |
GTCAAACCAAACCATACCTT+TGG | - | chr5.1:71851157-71851176 | MS.gene017025:intron | 40.0% | |
GTGAAGGTGACTACTGAAAA+TGG | - | chr5.1:71852979-71852998 | MS.gene017025:intron | 40.0% | |
GTGGTATTTATGCAGAATGG+AGG | - | chr5.1:71852239-71852258 | MS.gene017025:intron | 40.0% | |
GTTATACATACCCTAGCCAA+GGG | - | chr5.1:71852810-71852829 | MS.gene017025:intron | 40.0% | |
TATCATTGCTGTACCTCTTG+GGG | - | chr5.1:71853026-71853045 | MS.gene017025:intron | 40.0% | |
TATGCGCTCTTTGATATGGA+GGG | - | chr5.1:71851837-71851856 | MS.gene017025:intron | 40.0% | |
TCAAATTCGTTGATGCAGGT+TGG | - | chr5.1:71852191-71852210 | MS.gene017025:CDS | 40.0% | |
TCACCGTCTGTTATTGTCAT+AGG | - | chr5.1:71850379-71850398 | MS.gene017025:intron | 40.0% | |
TCCTATAGTTATGACGCAGT+TGG | - | chr5.1:71853738-71853757 | MS.gene017025:intron | 40.0% | |
TCTTTCCAATCTGGAAGCTT+TGG | + | chr5.1:71853081-71853100 | None:intergenic | 40.0% | |
TGCATACTCTACTGGAACAA+TGG | - | chr5.1:71853860-71853879 | MS.gene017025:intron | 40.0% | |
TGTGTTCATATGTCACCATG+TGG | + | chr5.1:71851198-71851217 | None:intergenic | 40.0% | |
TGTTATACATACCCTAGCCA+AGG | - | chr5.1:71852809-71852828 | MS.gene017025:intron | 40.0% | |
TTACATACAGGGTCTGTTCA+TGG | - | chr5.1:71853837-71853856 | MS.gene017025:intron | 40.0% | |
TTCAGACCCTATCACTTTAG+AGG | + | chr5.1:71853460-71853479 | None:intergenic | 40.0% | |
TTGAAAGAAAGCCAGAACTG+AGG | - | chr5.1:71852115-71852134 | MS.gene017025:intron | 40.0% | |
TTGGCTAGGGTATGTATAAC+AGG | + | chr5.1:71852810-71852829 | None:intergenic | 40.0% | |
TTTCCTCTGGTCATCTTGAA+TGG | - | chr5.1:71851762-71851781 | MS.gene017025:intron | 40.0% | |
! | ACAATGTGTGTCTTCGAGTT+TGG | - | chr5.1:71850811-71850830 | MS.gene017025:CDS | 40.0% |
! | ACACACATTGTGTATTGACG+TGG | + | chr5.1:71850802-71850821 | None:intergenic | 40.0% |
! | ATGAAGCATCATGAAGTGCA+CGG | + | chr5.1:71850432-71850451 | None:intergenic | 40.0% |
! | CAAGAGTTGGTTACAGAAGT+TGG | - | chr5.1:71851873-71851892 | MS.gene017025:intron | 40.0% |
! | TAAGAGGTTCAGAGTGGATT+TGG | - | chr5.1:71853432-71853451 | MS.gene017025:CDS | 40.0% |
! | TAGGGGATATAATGGAGTGA+AGG | - | chr5.1:71852963-71852982 | MS.gene017025:intron | 40.0% |
! | TCTAAAGTGATAGGGTCTGA+AGG | - | chr5.1:71853459-71853478 | MS.gene017025:intron | 40.0% |
! | TGTGTGTCTGTTATTTGCTG+TGG | - | chr5.1:71850864-71850883 | MS.gene017025:intron | 40.0% |
! | TTCTTGTTTACATGCCTGCT+GGG | - | chr5.1:71853259-71853278 | MS.gene017025:intron | 40.0% |
! | TTTGTCCCAAAGGTATGGTT+TGG | + | chr5.1:71851166-71851185 | None:intergenic | 40.0% |
!! | GTGTGTCTGTTATTTGCTGT+GGG | - | chr5.1:71850865-71850884 | MS.gene017025:intron | 40.0% |
!!! | AGATCTGGTTTTAGGATCGT+GGG | - | chr5.1:71849951-71849970 | MS.gene017025:CDS | 40.0% |
!!! | AGGTCGTTCTTTTAGAATCC+CGG | - | chr5.1:71851364-71851383 | MS.gene017025:intron | 40.0% |
!!! | TAGATCTGGTTTTAGGATCG+TGG | - | chr5.1:71849950-71849969 | MS.gene017025:CDS | 40.0% |
!!! | TTTGGTTTTCCTGTTGACCT+AGG | - | chr5.1:71851423-71851442 | MS.gene017025:intron | 40.0% |
AACCTCTCATACAGACCATG+CGG | + | chr5.1:71853768-71853787 | None:intergenic | 45.0% | |
AAGCTGCCATTGCTGATATC+GGG | - | chr5.1:71853100-71853119 | MS.gene017025:intron | 45.0% | |
AAGGTTTGTCTGGCATACGA+GGG | + | chr5.1:71850745-71850764 | None:intergenic | 45.0% | |
AATGTCAAGACCCTTGGCTA+GGG | + | chr5.1:71852823-71852842 | None:intergenic | 45.0% | |
ACCTCTTTACCGTACTTGTG+AGG | - | chr5.1:71851614-71851633 | MS.gene017025:intron | 45.0% | |
ACTAATCCCAATTCCCGCAA+AGG | - | chr5.1:71849824-71849843 | MS.gene017025:CDS | 45.0% | |
AGGGCGACAAAGATAGTTAG+GGG | - | chr5.1:71852946-71852965 | MS.gene017025:intron | 45.0% | |
AGTCGTATCACTAGAGGTAG+AGG | - | chr5.1:71850578-71850597 | MS.gene017025:CDS | 45.0% | |
ATCACTGAAATGTTGGGACC+AGG | - | chr5.1:71852290-71852309 | MS.gene017025:intron | 45.0% | |
ATGCGCTCTTTGATATGGAG+GGG | - | chr5.1:71851838-71851857 | MS.gene017025:intron | 45.0% | |
ATGGCAGCTTCTTTCCAATC+TGG | + | chr5.1:71853090-71853109 | None:intergenic | 45.0% | |
ATGGTCTGTATGAGAGGTTG+CGG | - | chr5.1:71853769-71853788 | MS.gene017025:intron | 45.0% | |
ATTTATGCAGAATGGAGGGC+TGG | - | chr5.1:71852244-71852263 | MS.gene017025:intron | 45.0% | |
CACGGTTTCTTCCAATTACC+TGG | + | chr5.1:71852311-71852330 | None:intergenic | 45.0% | |
CAGCTATGCGCTCTTTGATA+TGG | - | chr5.1:71851833-71851852 | MS.gene017025:intron | 45.0% | |
CAGGGCGACAAAGATAGTTA+GGG | - | chr5.1:71852945-71852964 | MS.gene017025:intron | 45.0% | |
CCACTTAGTGGGATAAGACT+GGG | - | chr5.1:71850703-71850722 | MS.gene017025:CDS | 45.0% | |
CCCAACTGCGTCATAACTAT+AGG | + | chr5.1:71853742-71853761 | None:intergenic | 45.0% | |
CCGCCTATGACAATAACAGA+CGG | + | chr5.1:71850385-71850404 | None:intergenic | 45.0% | |
CCGTCTGTTATTGTCATAGG+CGG | - | chr5.1:71850382-71850401 | MS.gene017025:intron | 45.0% | |
CGGGAATAGGGTTTGAAAAG+TGG | - | chr5.1:71850107-71850126 | MS.gene017025:intron | 45.0% | |
CTAGGGTATGTATAACAGGC+AGG | + | chr5.1:71852806-71852825 | None:intergenic | 45.0% | |
CTAGTTCCCCGTATCTTTCT+AGG | + | chr5.1:71853911-71853930 | None:intergenic | 45.0% | |
CTATGCGCTCTTTGATATGG+AGG | - | chr5.1:71851836-71851855 | MS.gene017025:intron | 45.0% | |
CTCACCCTTCTCTATATACC+TGG | - | chr5.1:71852730-71852749 | MS.gene017025:intron | 45.0% | |
CTTAATCTTCACAAAGCGGC+AGG | - | chr5.1:71853228-71853247 | MS.gene017025:intron | 45.0% | |
CTTATCCCACTAAGTGGGAT+CGG | + | chr5.1:71850700-71850719 | None:intergenic | 45.0% | |
GAAGCTGCCATTGCTGATAT+CGG | - | chr5.1:71853099-71853118 | MS.gene017025:intron | 45.0% | |
GAGCAATTCTTCCTGTAACC+AGG | + | chr5.1:71852751-71852770 | None:intergenic | 45.0% | |
GCAGACAGATAATGTACGAC+AGG | - | chr5.1:71852047-71852066 | MS.gene017025:intron | 45.0% | |
GCAGGCATGTAAACAAGAAC+AGG | + | chr5.1:71853258-71853277 | None:intergenic | 45.0% | |
GCTATCATTGCTGTACCTCT+TGG | - | chr5.1:71853024-71853043 | MS.gene017025:intron | 45.0% | |
GGGAATTTGTCCCAAAGGTA+TGG | + | chr5.1:71851171-71851190 | None:intergenic | 45.0% | |
GTTCATGGTGCATACTCTAC+TGG | - | chr5.1:71853852-71853871 | MS.gene017025:intron | 45.0% | |
TAGCCAAGGGTCTTGACATT+CGG | - | chr5.1:71852823-71852842 | MS.gene017025:intron | 45.0% | |
TCAGGGCGACAAAGATAGTT+AGG | - | chr5.1:71852944-71852963 | MS.gene017025:intron | 45.0% | |
TCCTCACAAGTACGGTAAAG+AGG | + | chr5.1:71851618-71851637 | None:intergenic | 45.0% | |
TCTGTTATTGTCATAGGCGG+TGG | - | chr5.1:71850385-71850404 | MS.gene017025:intron | 45.0% | |
TGCGTGTCCTAGAAAGATAC+GGG | - | chr5.1:71853901-71853920 | MS.gene017025:intron | 45.0% | |
TTACAGGAAGAATTGCTCCC+TGG | - | chr5.1:71852753-71852772 | MS.gene017025:intron | 45.0% | |
TTAGAATCCCGGGATAGACT+TGG | - | chr5.1:71851375-71851394 | MS.gene017025:intron | 45.0% | |
TTGAGCCAAAGCTTCCAGAT+TGG | - | chr5.1:71853073-71853092 | MS.gene017025:intron | 45.0% | |
TTTGCTTTCAGTACCCCAAG+AGG | + | chr5.1:71853042-71853061 | None:intergenic | 45.0% | |
! | AATCCTCTGGCTCCATTGAT+TGG | - | chr5.1:71851579-71851598 | MS.gene017025:intron | 45.0% |
! | AATTCGTTGATGCAGGTTGG+AGG | - | chr5.1:71852194-71852213 | MS.gene017025:CDS | 45.0% |
! | AGTTACCGGTGAAGAAGCAT+CGG | + | chr5.1:71853364-71853383 | None:intergenic | 45.0% |
! | ATCCTCTGGCTCCATTGATT+GGG | - | chr5.1:71851580-71851599 | MS.gene017025:intron | 45.0% |
! | ATTCGTTGATGCAGGTTGGA+GGG | - | chr5.1:71852195-71852214 | MS.gene017025:CDS | 45.0% |
! | CCAGTCTTATCCCACTAAGT+GGG | + | chr5.1:71850705-71850724 | None:intergenic | 45.0% |
! | GTGGACTGAGGATTCATGTA+TGG | - | chr5.1:71852423-71852442 | MS.gene017025:intron | 45.0% |
! | GTTCTTGTTTACATGCCTGC+TGG | - | chr5.1:71853258-71853277 | MS.gene017025:intron | 45.0% |
! | TGAAGCATCATGAAGTGCAC+GGG | + | chr5.1:71850431-71850450 | None:intergenic | 45.0% |
! | TTTCACACAAGGTGCTTCAG+TGG | - | chr5.1:71852220-71852239 | MS.gene017025:CDS | 45.0% |
!! | TGGTCATGGTCTTATGGTCA+GGG | - | chr5.1:71852776-71852795 | MS.gene017025:intron | 45.0% |
!!! | ATTTTTTACGCGGTGGACTG+AGG | - | chr5.1:71852411-71852430 | MS.gene017025:CDS | 45.0% |
!!! | CAACGTATTTTGGCCCAATG+TGG | - | chr5.1:71853158-71853177 | MS.gene017025:intron | 45.0% |
!!! | GGTCGTTCTTTTAGAATCCC+GGG | - | chr5.1:71851365-71851384 | MS.gene017025:intron | 45.0% |
AACCGCATGGTCTGTATGAG+AGG | - | chr5.1:71853763-71853782 | MS.gene017025:intron | 50.0% | |
AAGGGTCTTGACATTCGGCT+GGG | - | chr5.1:71852828-71852847 | MS.gene017025:intron | 50.0% | |
ACCATAAGACCATGACCACC+AGG | + | chr5.1:71852774-71852793 | None:intergenic | 50.0% | |
ACTAAGTGGGATCGGCTACA+TGG | + | chr5.1:71850692-71850711 | None:intergenic | 50.0% | |
ACTCCCAGGAACTCCACATT+GGG | + | chr5.1:71853174-71853193 | None:intergenic | 50.0% | |
ACTGAACCCTCTTCCAACTC+TGG | + | chr5.1:71853945-71853964 | None:intergenic | 50.0% | |
AGCTGCCATTGCTGATATCG+GGG | - | chr5.1:71853101-71853120 | MS.gene017025:intron | 50.0% | |
ATAACAGACGGTGACCTTCG+AGG | + | chr5.1:71850373-71850392 | None:intergenic | 50.0% | |
ATGTAGCCGATCCCACTTAG+TGG | - | chr5.1:71850691-71850710 | MS.gene017025:CDS | 50.0% | |
ATGTCTCAGCAACTACTCCC+AGG | + | chr5.1:71853188-71853207 | None:intergenic | 50.0% | |
ATGTTGATCAGCAGCCTCGA+AGG | - | chr5.1:71850356-71850375 | MS.gene017025:intron | 50.0% | |
ATTCCAGCCAGAGTTGGAAG+AGG | - | chr5.1:71853935-71853954 | MS.gene017025:intron | 50.0% | |
CATGATGCACCTAGGTCAAC+AGG | + | chr5.1:71851435-71851454 | None:intergenic | 50.0% | |
CCATAAGACCATGACCACCA+GGG | + | chr5.1:71852773-71852792 | None:intergenic | 50.0% | |
CCCACTTAGTGGGATAAGAC+TGG | - | chr5.1:71850702-71850721 | MS.gene017025:CDS | 50.0% | |
CTGTTGACCTAGGTGCATCA+TGG | - | chr5.1:71851433-71851452 | MS.gene017025:intron | 50.0% | |
GAAGGTTTGTCTGGCATACG+AGG | + | chr5.1:71850746-71850765 | None:intergenic | 50.0% | |
GAATGTCAAGACCCTTGGCT+AGG | + | chr5.1:71852824-71852843 | None:intergenic | 50.0% | |
GCGTGTCCTAGAAAGATACG+GGG | - | chr5.1:71853902-71853921 | MS.gene017025:intron | 50.0% | |
TACTCCCAGGAACTCCACAT+TGG | + | chr5.1:71853175-71853194 | None:intergenic | 50.0% | |
TACTGGAACAATGGCTGCTG+AGG | - | chr5.1:71853869-71853888 | MS.gene017025:intron | 50.0% | |
TATTGTCATAGGCGGTGGCA+TGG | - | chr5.1:71850390-71850409 | MS.gene017025:intron | 50.0% | |
TCAGTATCTCGTGTCTCGGT+GGG | - | chr5.1:71853692-71853711 | MS.gene017025:intron | 50.0% | |
TCCAACCCCGATATCAGCAA+TGG | + | chr5.1:71853109-71853128 | None:intergenic | 50.0% | |
TGATACTCACACGTCGACAC+TGG | - | chr5.1:71850521-71850540 | MS.gene017025:CDS | 50.0% | |
TGGTCTGTATGAGAGGTTGC+GGG | - | chr5.1:71853770-71853789 | MS.gene017025:intron | 50.0% | |
TGTAGCCGATCCCACTTAGT+GGG | - | chr5.1:71850692-71850711 | MS.gene017025:CDS | 50.0% | |
TTCAGTATCTCGTGTCTCGG+TGG | - | chr5.1:71853691-71853710 | MS.gene017025:intron | 50.0% | |
TTCCAGCCAGAGTTGGAAGA+GGG | - | chr5.1:71853936-71853955 | MS.gene017025:intron | 50.0% | |
TTCTGCCACCAAGTCTATCC+CGG | + | chr5.1:71851386-71851405 | None:intergenic | 50.0% | |
TTGTTTACATGCCTGCTGGG+CGG | - | chr5.1:71853262-71853281 | MS.gene017025:intron | 50.0% | |
! | CCCAGTCTTATCCCACTAAG+TGG | + | chr5.1:71850706-71850725 | None:intergenic | 50.0% |
! | TTCGTTGATGCAGGTTGGAG+GGG | - | chr5.1:71852196-71852215 | MS.gene017025:CDS | 50.0% |
!! | GGTCATGGTCTTATGGTCAG+GGG | - | chr5.1:71852777-71852796 | MS.gene017025:intron | 50.0% |
!! | GTGGTCATGGTCTTATGGTC+AGG | - | chr5.1:71852775-71852794 | MS.gene017025:intron | 50.0% |
!! | GTTACCGGTGAAGAAGCATC+GGG | + | chr5.1:71853363-71853382 | None:intergenic | 50.0% |
AACCCTCTTCCAACTCTGGC+TGG | + | chr5.1:71853941-71853960 | None:intergenic | 55.0% | |
AGGGTCTTGACATTCGGCTG+GGG | - | chr5.1:71852829-71852848 | MS.gene017025:intron | 55.0% | |
AGTCCCAGCCTCCCAATCAA+TGG | + | chr5.1:71851594-71851613 | None:intergenic | 55.0% | |
CAAGGGTCTTGACATTCGGC+TGG | - | chr5.1:71852827-71852846 | MS.gene017025:intron | 55.0% | |
CAGCCGAATGTCAAGACCCT+TGG | + | chr5.1:71852829-71852848 | None:intergenic | 55.0% | |
CAGGAAGAATTGCTCCCTGG+TGG | - | chr5.1:71852756-71852775 | MS.gene017025:intron | 55.0% | |
CAGTATCTCGTGTCTCGGTG+GGG | - | chr5.1:71853693-71853712 | MS.gene017025:intron | 55.0% | |
CCTTCCCGATGCTTCTTCAC+CGG | - | chr5.1:71853356-71853375 | MS.gene017025:CDS | 55.0% | |
CTCCCAATCAATGGAGCCAG+AGG | + | chr5.1:71851585-71851604 | None:intergenic | 55.0% | |
GAATCCCGGGATAGACTTGG+TGG | - | chr5.1:71851378-71851397 | MS.gene017025:intron | 55.0% | |
GAATTGCTCCCTGGTGGTCA+TGG | - | chr5.1:71852762-71852781 | MS.gene017025:intron | 55.0% | |
GCCATTGCTGATATCGGGGT+TGG | - | chr5.1:71853105-71853124 | MS.gene017025:intron | 55.0% | |
GTTGGAGGGGCTTTCACACA+AGG | - | chr5.1:71852209-71852228 | MS.gene017025:CDS | 55.0% | |
TCTGCCACCAAGTCTATCCC+GGG | + | chr5.1:71851385-71851404 | None:intergenic | 55.0% | |
TGGCCCAATGTGGAGTTCCT+GGG | - | chr5.1:71853168-71853187 | MS.gene017025:intron | 55.0% | |
TTGGCCCAATGTGGAGTTCC+TGG | - | chr5.1:71853167-71853186 | MS.gene017025:intron | 55.0% | |
! | CCCTGGTGGTCATGGTCTTA+TGG | - | chr5.1:71852770-71852789 | MS.gene017025:intron | 55.0% |
! | CTCTGGCTCCATTGATTGGG+AGG | - | chr5.1:71851583-71851602 | MS.gene017025:intron | 55.0% |
! | GCTCCATTGATTGGGAGGCT+GGG | - | chr5.1:71851588-71851607 | MS.gene017025:intron | 55.0% |
! | GTGTCTTCGAGTTTGGCTCG+TGG | - | chr5.1:71850818-71850837 | MS.gene017025:CDS | 55.0% |
CAATGGCTGCTGAGGACTGC+AGG | - | chr5.1:71853877-71853896 | MS.gene017025:intron | 60.0% | |
GACGCAGTTGGGAAACCGCA+TGG | - | chr5.1:71853750-71853769 | MS.gene017025:intron | 60.0% | |
TCATAGGCGGTGGCATGGCT+GGG | - | chr5.1:71850395-71850414 | MS.gene017025:intron | 60.0% | |
TTGACATTCGGCTGGGGCAC+AGG | - | chr5.1:71852835-71852854 | MS.gene017025:intron | 60.0% | |
! | GGCTCCATTGATTGGGAGGC+TGG | - | chr5.1:71851587-71851606 | MS.gene017025:intron | 60.0% |
!! | CCGGTGAAGAAGCATCGGGA+AGG | + | chr5.1:71853359-71853378 | None:intergenic | 60.0% |
GTCATAGGCGGTGGCATGGC+TGG | - | chr5.1:71850394-71850413 | MS.gene017025:intron | 65.0% | |
TTACATGCCTGCTGGGCGGC+TGG | - | chr5.1:71853266-71853285 | MS.gene017025:intron | 65.0% | |
TCTTTGGCCAGCCGCCCAGC+AGG | + | chr5.1:71853276-71853295 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 71849806 | 71853992 | 71849806 | ID=MS.gene017025 |
chr5.1 | mRNA | 71849806 | 71853992 | 71849806 | ID=MS.gene017025.t1;Parent=MS.gene017025 |
chr5.1 | exon | 71853953 | 71853992 | 71853953 | ID=MS.gene017025.t1.exon1;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71853953 | 71853992 | 71853953 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71853342 | 71853457 | 71853342 | ID=MS.gene017025.t1.exon2;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71853342 | 71853457 | 71853342 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71852344 | 71852432 | 71852344 | ID=MS.gene017025.t1.exon3;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71852344 | 71852432 | 71852344 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71852128 | 71852241 | 71852128 | ID=MS.gene017025.t1.exon4;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71852128 | 71852241 | 71852128 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71851875 | 71851962 | 71851875 | ID=MS.gene017025.t1.exon5;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71851875 | 71851962 | 71851875 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71851662 | 71851747 | 71851662 | ID=MS.gene017025.t1.exon6;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71851662 | 71851747 | 71851662 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71851487 | 71851589 | 71851487 | ID=MS.gene017025.t1.exon7;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71851487 | 71851589 | 71851487 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71850942 | 71851039 | 71850942 | ID=MS.gene017025.t1.exon8;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71850942 | 71851039 | 71850942 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71850421 | 71850850 | 71850421 | ID=MS.gene017025.t1.exon9;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71850421 | 71850850 | 71850421 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
chr5.1 | exon | 71849806 | 71850108 | 71849806 | ID=MS.gene017025.t1.exon10;Parent=MS.gene017025.t1 |
chr5.1 | CDS | 71849806 | 71850108 | 71849806 | ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1 |
Gene Sequence |
Protein sequence |