AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017025


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017025.t1 MTR_5g090300 98.975 488 5 0 1 488 1 488 0.0 999
MS.gene017025.t1 MTR_3g449620 83.469 490 79 1 1 488 1 490 0.0 818
MS.gene017025.t1 MTR_3g064370 64.634 492 170 1 1 488 1 492 0.0 658
MS.gene017025.t1 MTR_3g064370 65.060 415 141 1 78 488 1 415 0.0 563
MS.gene017025.t1 MTR_3g064370 67.609 389 126 0 1 389 1 389 0.0 555
MS.gene017025.t1 MTR_1g023510 34.737 475 260 12 30 454 867 1341 4.59e-67 234
MS.gene017025.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 7.44e-67 234
MS.gene017025.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 9.63e-67 233
MS.gene017025.t1 MTR_5g087920 76.000 125 30 0 280 404 12 136 6.29e-60 193
MS.gene017025.t1 MTR_6g084700 34.904 467 261 15 29 467 221 672 3.89e-55 197
MS.gene017025.t1 MTR_3g055090 32.373 451 259 13 29 454 160 589 1.74e-53 192
MS.gene017025.t1 MTR_8g464450 31.938 454 257 15 29 454 163 592 1.92e-42 161
MS.gene017025.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 2.46e-41 158
MS.gene017025.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 3.04e-41 158
MS.gene017025.t1 MTR_2g039160 26.715 554 287 18 26 472 4 545 2.63e-33 132
MS.gene017025.t1 MTR_3g033000 28.009 432 265 15 53 458 33 444 1.39e-30 124
MS.gene017025.t1 MTR_3g033000 27.586 377 231 14 53 407 33 389 8.73e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017025.t1 AT2G43020 78.776 490 102 2 1 488 1 490 0.0 788
MS.gene017025.t1 AT3G59050 78.367 490 102 3 1 488 1 488 0.0 781
MS.gene017025.t1 AT1G65840 62.474 477 171 2 20 488 21 497 0.0 630
MS.gene017025.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene017025.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene017025.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene017025.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene017025.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene017025.t1 AT1G62830 34.475 467 271 14 28 473 266 718 1.27e-54 196
MS.gene017025.t1 AT3G10390 32.700 474 264 15 14 456 169 618 5.24e-50 183
MS.gene017025.t1 AT3G10390 33.333 474 261 16 14 456 169 618 1.01e-49 182
MS.gene017025.t1 AT3G13682 33.966 474 254 14 17 454 140 590 1.09e-49 181
MS.gene017025.t1 AT3G10390 32.700 474 264 15 14 456 221 670 1.39e-49 182
MS.gene017025.t1 AT3G10390 33.333 474 261 16 14 456 221 670 1.47e-49 182
MS.gene017025.t1 AT5G13700 28.125 448 263 15 53 475 30 443 2.54e-34 134
MS.gene017025.t1 AT4G29720 23.766 547 290 13 26 465 3 529 3.10e-34 135

Find 154 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTTCAACAACGTATTT+TGG 0.147701 5.1:-71850628 MS.gene017025:CDS
AAATGAACCTTTGCGGGAAT+TGG 0.219044 5.1:+71853945 None:intergenic
CTAGTTCCCCGTATCTTTCT+AGG 0.225042 5.1:+71849868 None:intergenic
CCCTGGTGGTCATGGTCTTA+TGG 0.250033 5.1:-71851006 MS.gene017025:CDS
GTAGATAACTTATTCTTTGC+AGG 0.258142 5.1:-71849978 MS.gene017025:CDS
ACTTCATGATGCTTCATTTC+AGG 0.276706 5.1:-71853341 MS.gene017025:intron
TTGGCCCAATGTGGAGTTCC+TGG 0.277098 5.1:-71850609 MS.gene017025:CDS
CAGCTATGCGCTCTTTGATA+TGG 0.277998 5.1:-71851943 MS.gene017025:CDS
GGCTCCATTGATTGGGAGGC+TGG 0.279036 5.1:-71852189 MS.gene017025:CDS
GTCATAGGCGGTGGCATGGC+TGG 0.307377 5.1:-71853382 MS.gene017025:CDS
CTATCATTGCTGTACCTCTT+GGG 0.307858 5.1:-71850751 MS.gene017025:CDS
TCAGGGCGACAAAGATAGTT+AGG 0.311809 5.1:-71850832 MS.gene017025:intron
TCTTTCCAATCTGGAAGCTT+TGG 0.318953 5.1:+71850698 None:intergenic
GCTAATAATGACCTCAGTTC+TGG 0.323376 5.1:+71851650 None:intergenic
ATTCACACTGATTACTCATT+TGG 0.325638 5.1:-71852371 MS.gene017025:CDS
GCTATCATTGCTGTACCTCT+TGG 0.347891 5.1:-71850752 MS.gene017025:CDS
AATCCTCTGGCTCCATTGAT+TGG 0.348932 5.1:-71852197 MS.gene017025:CDS
GAAGCTGCCATTGCTGATAT+CGG 0.349601 5.1:-71850677 MS.gene017025:CDS
GTGAAGGTGACTACTGAAAA+TGG 0.357159 5.1:-71850797 MS.gene017025:CDS
AAGATAGTTAGGGGATATAA+TGG 0.370197 5.1:-71850821 MS.gene017025:CDS
GTTCTTGTTTACATGCCTGC+TGG 0.371256 5.1:-71850518 MS.gene017025:CDS
TTACATGCCTGCTGGGCGGC+TGG 0.383621 5.1:-71850510 MS.gene017025:CDS
ATGGCAGCTTCTTTCCAATC+TGG 0.384672 5.1:+71850689 None:intergenic
ATTCTATATCACTGAAATGT+TGG 0.387439 5.1:-71851493 MS.gene017025:CDS
GTGGTCATGGTCTTATGGTC+AGG 0.387478 5.1:-71851001 MS.gene017025:CDS
AATGAACCTTTGCGGGAATT+GGG 0.395567 5.1:+71853946 None:intergenic
TGTCCTATACGATCATGATT+TGG 0.402825 5.1:-71852132 MS.gene017025:CDS
TTGGCTAGGGTATGTATAAC+AGG 0.405023 5.1:+71850969 None:intergenic
GTAGTTGCTGAGACATCTTA+TGG 0.410548 5.1:-71850584 MS.gene017025:CDS
TCACCGTCTGTTATTGTCAT+AGG 0.417890 5.1:-71853397 MS.gene017025:CDS
TCTTTGGCCAGCCGCCCAGC+AGG 0.424805 5.1:+71850503 None:intergenic
CAAGGGTCTTGACATTCGGC+TGG 0.431094 5.1:-71850949 MS.gene017025:CDS
ATCCTCTGGCTCCATTGATT+GGG 0.431803 5.1:-71852196 MS.gene017025:CDS
TTGAGCCAAAGCTTCCAGAT+TGG 0.433940 5.1:-71850703 MS.gene017025:CDS
AATTGAAAGTGCACGAAGAA+TGG 0.438137 5.1:+71851688 None:intergenic
CCTATAGTTATGACGCAGTT+GGG 0.440336 5.1:-71850037 MS.gene017025:CDS
AAGCTGCCATTGCTGATATC+GGG 0.442969 5.1:-71850676 MS.gene017025:CDS
GAATTGCTCCCTGGTGGTCA+TGG 0.446683 5.1:-71851014 MS.gene017025:CDS
TTTCCAAATCATGATCGTAT+AGG 0.448434 5.1:+71852129 None:intergenic
CATGATGCACCTAGGTCAAC+AGG 0.448585 5.1:+71852344 None:intergenic
TTCTATATCACTGAAATGTT+GGG 0.449054 5.1:-71851492 MS.gene017025:CDS
TTCTTGTTTACATGCCTGCT+GGG 0.453430 5.1:-71850517 MS.gene017025:CDS
CAAGAGTTGGTTACAGAAGT+TGG 0.457743 5.1:-71851903 MS.gene017025:CDS
CAGGGCGACAAAGATAGTTA+GGG 0.457896 5.1:-71850831 MS.gene017025:CDS
TGGCCCAATGTGGAGTTCCT+GGG 0.459578 5.1:-71850608 MS.gene017025:CDS
GCTCCATTGATTGGGAGGCT+GGG 0.462828 5.1:-71852188 MS.gene017025:CDS
TTGACATTCGGCTGGGGCAC+AGG 0.462919 5.1:-71850941 MS.gene017025:intron
GCAGGCATGTAAACAAGAAC+AGG 0.463011 5.1:+71850521 None:intergenic
AACCCTCTTCCAACTCTGGC+TGG 0.467559 5.1:+71849838 None:intergenic
TTACATACAGGGTCTGTTCA+TGG 0.475124 5.1:-71849939 MS.gene017025:CDS
TCAGTATCTCGTGTCTCGGT+GGG 0.475314 5.1:-71850084 MS.gene017025:CDS
CCCAACTGCGTCATAACTAT+AGG 0.475903 5.1:+71850037 None:intergenic
GCAAAGAATAAGTTATCTAC+AGG 0.484780 5.1:+71849981 None:intergenic
CAATGGCTGCTGAGGACTGC+AGG 0.485843 5.1:-71849899 MS.gene017025:CDS
GTTCATGGTGCATACTCTAC+TGG 0.488310 5.1:-71849924 MS.gene017025:CDS
GCAACGAGTGTATTACATAC+AGG 0.492456 5.1:-71849951 MS.gene017025:CDS
TTCTGCCACCAAGTCTATCC+CGG 0.493984 5.1:+71852393 None:intergenic
AGTCCCAGCCTCCCAATCAA+TGG 0.497011 5.1:+71852185 None:intergenic
TGGTCATGGTCTTATGGTCA+GGG 0.502310 5.1:-71851000 MS.gene017025:CDS
TAGATAACTTATTCTTTGCA+GGG 0.507097 5.1:-71849977 MS.gene017025:CDS
GCCATTGCTGATATCGGGGT+TGG 0.507133 5.1:-71850671 MS.gene017025:CDS
TTCGTTGATGCAGGTTGGAG+GGG 0.509332 5.1:-71851580 MS.gene017025:intron
CTGTTGACCTAGGTGCATCA+TGG 0.509864 5.1:-71852343 MS.gene017025:intron
CTTAATCTTCACAAAGCGGC+AGG 0.511464 5.1:-71850548 MS.gene017025:CDS
TAGCCAAGGGTCTTGACATT+CGG 0.512251 5.1:-71850953 MS.gene017025:CDS
CTCTGGCTCCATTGATTGGG+AGG 0.513671 5.1:-71852193 MS.gene017025:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.515557 5.1:-71851540 MS.gene017025:CDS
TGCGTGTCCTAGAAAGATAC+GGG 0.517425 5.1:-71849875 MS.gene017025:CDS
TCCTATAGTTATGACGCAGT+TGG 0.517976 5.1:-71850038 MS.gene017025:CDS
TCATAGGCGGTGGCATGGCT+GGG 0.518133 5.1:-71853381 MS.gene017025:CDS
ACTGAACCCTCTTCCAACTC+TGG 0.519154 5.1:+71849834 None:intergenic
ACCATAAGACCATGACCACC+AGG 0.519331 5.1:+71851005 None:intergenic
TGGTCTGTATGAGAGGTTGC+GGG 0.523316 5.1:-71850006 MS.gene017025:CDS
CAGCCGAATGTCAAGACCCT+TGG 0.525666 5.1:+71850950 None:intergenic
ATGCGTGTCCTAGAAAGATA+CGG 0.527553 5.1:-71849876 MS.gene017025:CDS
ACTCCCAGGAACTCCACATT+GGG 0.528892 5.1:+71850605 None:intergenic
TCTGTTATTGTCATAGGCGG+TGG 0.531300 5.1:-71853391 MS.gene017025:CDS
ATGGTCTGTATGAGAGGTTG+CGG 0.532017 5.1:-71850007 MS.gene017025:CDS
ATTCGTTGATGCAGGTTGGA+GGG 0.533554 5.1:-71851581 MS.gene017025:intron
CAAATACGAGATATCAGAAG+TGG 0.533727 5.1:+71849807 None:intergenic
CCTTCCCGATGCTTCTTCAC+CGG 0.535712 5.1:-71850420 MS.gene017025:intron
GAATCAAGTTCCACAAGAGT+TGG 0.536968 5.1:-71851916 MS.gene017025:CDS
CTATGCGCTCTTTGATATGG+AGG 0.537548 5.1:-71851940 MS.gene017025:CDS
TGAAGGTGACTACTGAAAAT+GGG 0.540274 5.1:-71850796 MS.gene017025:CDS
AAGGGTCTTGACATTCGGCT+GGG 0.542089 5.1:-71850948 MS.gene017025:CDS
ATAACAGACGGTGACCTTCG+AGG 0.542275 5.1:+71853406 None:intergenic
AATTCGTTGATGCAGGTTGG+AGG 0.542488 5.1:-71851582 MS.gene017025:intron
ATTTATGCAGAATGGAGGGC+TGG 0.545277 5.1:-71851532 MS.gene017025:CDS
AGATATATTCCAGCCAGAGT+TGG 0.546397 5.1:-71849847 MS.gene017025:CDS
TTAGAATCCCGGGATAGACT+TGG 0.547928 5.1:-71852401 MS.gene017025:CDS
AGGGTCTTGACATTCGGCTG+GGG 0.550051 5.1:-71850947 MS.gene017025:CDS
TACTGGAACAATGGCTGCTG+AGG 0.550086 5.1:-71849907 MS.gene017025:CDS
TTCAGTATCTCGTGTCTCGG+TGG 0.557308 5.1:-71850085 MS.gene017025:CDS
TGCATACTCTACTGGAACAA+TGG 0.558563 5.1:-71849916 MS.gene017025:CDS
GAATGTCAAGACCCTTGGCT+AGG 0.558837 5.1:+71850955 None:intergenic
GAATCCCGGGATAGACTTGG+TGG 0.558858 5.1:-71852398 MS.gene017025:CDS
GTTGGAGGGGCTTTCACACA+AGG 0.559617 5.1:-71851567 MS.gene017025:CDS
AGTTACCGGTGAAGAAGCAT+CGG 0.560061 5.1:+71850415 None:intergenic
TACTCCCAGGAACTCCACAT+TGG 0.560675 5.1:+71850604 None:intergenic
GCAGACAGATAATGTACGAC+AGG 0.565366 5.1:-71851729 MS.gene017025:intron
CAGAGTTATCCTCACAAGTA+CGG 0.566480 5.1:+71852153 None:intergenic
TCCTCACAAGTACGGTAAAG+AGG 0.571437 5.1:+71852161 None:intergenic
AATGTCAAGACCCTTGGCTA+GGG 0.571742 5.1:+71850956 None:intergenic
TTTCACACAAGGTGCTTCAG+TGG 0.575044 5.1:-71851556 MS.gene017025:CDS
TAGGGGATATAATGGAGTGA+AGG 0.576412 5.1:-71850813 MS.gene017025:CDS
TGAAGCATCATGAAGTGCAC+GGG 0.579978 5.1:+71853348 None:intergenic
ATTCCAGCCAGAGTTGGAAG+AGG 0.581520 5.1:-71849841 MS.gene017025:CDS
AACCGCATGGTCTGTATGAG+AGG 0.584210 5.1:-71850013 MS.gene017025:CDS
CTAGGGTATGTATAACAGGC+AGG 0.584240 5.1:+71850973 None:intergenic
ATGTCTCAGCAACTACTCCC+AGG 0.584539 5.1:+71850591 None:intergenic
ACCTCTTTACCGTACTTGTG+AGG 0.587430 5.1:-71852162 MS.gene017025:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 5.1:-71851537 MS.gene017025:CDS
ATGAAGCATCATGAAGTGCA+CGG 0.590616 5.1:+71853347 None:intergenic
TATGCGCTCTTTGATATGGA+GGG 0.591981 5.1:-71851939 MS.gene017025:CDS
ATCACTGAAATGTTGGGACC+AGG 0.592003 5.1:-71851486 MS.gene017025:intron
GACGCAGTTGGGAAACCGCA+TGG 0.594696 5.1:-71850026 MS.gene017025:CDS
ATGTTGATCAGCAGCCTCGA+AGG 0.595305 5.1:-71853420 MS.gene017025:CDS
TCTGCCACCAAGTCTATCCC+GGG 0.596007 5.1:+71852394 None:intergenic
AGGGCGACAAAGATAGTTAG+GGG 0.596239 5.1:-71850830 MS.gene017025:CDS
TGTTATACATACCCTAGCCA+AGG 0.597299 5.1:-71850967 MS.gene017025:CDS
ACTAATCCCAATTCCCGCAA+AGG 0.600311 5.1:-71853952 MS.gene017025:intron
TATACGATCATGATTTGGAA+AGG 0.602711 5.1:-71852127 MS.gene017025:intron
GTTACCGGTGAAGAAGCATC+GGG 0.603982 5.1:+71850416 None:intergenic
CTCCCAATCAATGGAGCCAG+AGG 0.605374 5.1:+71852194 None:intergenic
TATCATTGCTGTACCTCTTG+GGG 0.605759 5.1:-71850750 MS.gene017025:CDS
GGTACAGATATTAATTCACT+AGG 0.607199 5.1:-71850062 MS.gene017025:CDS
CAACGAGTGTATTACATACA+GGG 0.607621 5.1:-71849950 MS.gene017025:CDS
TTACAGGAAGAATTGCTCCC+TGG 0.609122 5.1:-71851023 MS.gene017025:intron
AGATTCAGTATCTCGTGTCT+CGG 0.611152 5.1:-71850088 MS.gene017025:CDS
TGATTATGATTCAGGTTGCA+TGG 0.611159 5.1:-71852233 MS.gene017025:intron
TTCCAGCCAGAGTTGGAAGA+GGG 0.614724 5.1:-71849840 MS.gene017025:CDS
AGTTTGCAATGAGAATCCTC+TGG 0.615479 5.1:-71852210 MS.gene017025:CDS
TGGTATTTATGCAGAATGGA+GGG 0.621034 5.1:-71851536 MS.gene017025:CDS
TATTGTCATAGGCGGTGGCA+TGG 0.626229 5.1:-71853386 MS.gene017025:CDS
TCCAACCCCGATATCAGCAA+TGG 0.632597 5.1:+71850670 None:intergenic
GGTCATGGTCTTATGGTCAG+GGG 0.639940 5.1:-71850999 MS.gene017025:CDS
AGCTGCCATTGCTGATATCG+GGG 0.641150 5.1:-71850675 MS.gene017025:CDS
CCGTCTGTTATTGTCATAGG+CGG 0.645271 5.1:-71853394 MS.gene017025:CDS
ACTTCTGTAACCAACTCTTG+TGG 0.651673 5.1:+71851906 None:intergenic
CCGGTGAAGAAGCATCGGGA+AGG 0.655055 5.1:+71850420 None:intergenic
ATCTTTACCATGATGCACCT+AGG 0.655995 5.1:+71852336 None:intergenic
CAGTATCTCGTGTCTCGGTG+GGG 0.656943 5.1:-71850083 MS.gene017025:CDS
TTGAAAGAAAGCCAGAACTG+AGG 0.657435 5.1:-71851661 MS.gene017025:intron
ATGCGCTCTTTGATATGGAG+GGG 0.658060 5.1:-71851938 MS.gene017025:CDS
TTTGCTTTCAGTACCCCAAG+AGG 0.665152 5.1:+71850737 None:intergenic
CTTTCTTAATCTTCACAAAG+CGG 0.672988 5.1:-71850552 MS.gene017025:CDS
CAGGAAGAATTGCTCCCTGG+TGG 0.673379 5.1:-71851020 MS.gene017025:CDS
GTTATACATACCCTAGCCAA+GGG 0.684397 5.1:-71850966 MS.gene017025:CDS
AGATAACTTATTCTTTGCAG+GGG 0.691736 5.1:-71849976 MS.gene017025:CDS
CCATAAGACCATGACCACCA+GGG 0.693042 5.1:+71851006 None:intergenic
CCGCCTATGACAATAACAGA+CGG 0.695318 5.1:+71853394 None:intergenic
TTGTTTACATGCCTGCTGGG+CGG 0.710778 5.1:-71850514 MS.gene017025:CDS
AACCTCTCATACAGACCATG+CGG 0.717356 5.1:+71850011 None:intergenic
GCGTGTCCTAGAAAGATACG+GGG 0.777230 5.1:-71849874 MS.gene017025:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGAAATTTAATCAATT+AGG + chr5.1:71850050-71850069 None:intergenic 10.0%
!! ATATTATAATATTTGATGTA+AGG - chr5.1:71852603-71852622 MS.gene017025:intron 10.0%
!! TATTATAATATTTGATGTAA+GGG - chr5.1:71852604-71852623 MS.gene017025:intron 10.0%
!!! TTTTATATATTGGTAAAAAA+CGG - chr5.1:71850087-71850106 MS.gene017025:CDS 10.0%
!! AAAAAAAGTGATAAATCATT+TGG - chr5.1:71850131-71850150 MS.gene017025:intron 15.0%
!! AAAAAAGTGATAAATCATTT+GGG - chr5.1:71850132-71850151 MS.gene017025:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG - chr5.1:71851780-71851799 MS.gene017025:intron 15.0%
!! AGGAAAAACAAAATAATTAA+AGG + chr5.1:71851254-71851273 None:intergenic 15.0%
!! TTTATATATTGGTAAAAAAC+GGG - chr5.1:71850088-71850107 MS.gene017025:CDS 15.0%
!!! AATTTCTAATTTTTATGATC+AGG - chr5.1:71850059-71850078 MS.gene017025:CDS 15.0%
!!! ATGCATTTTTTGTTATTATT+TGG - chr5.1:71851675-71851694 MS.gene017025:CDS 15.0%
!!! ATTTAACTTGTTTTTTACAA+TGG - chr5.1:71853401-71853420 MS.gene017025:CDS 15.0%
!!! ATTTCTAATTTTTATGATCA+GGG - chr5.1:71850060-71850079 MS.gene017025:CDS 15.0%
!!! TTACATAAATATTTTTTACG+CGG - chr5.1:71852401-71852420 MS.gene017025:CDS 15.0%
!!! TTTAAAACTATTATAGTTAC+CGG + chr5.1:71853378-71853397 None:intergenic 15.0%
!!! TTTTTTTTTTGTTCTGAATT+TGG - chr5.1:71849904-71849923 MS.gene017025:CDS 15.0%
!! AACAAAATAATTAAAGGAGA+TGG + chr5.1:71851248-71851267 None:intergenic 20.0%
!! AATAATTCAAAGAGTTGTAT+TGG - chr5.1:71850186-71850205 MS.gene017025:intron 20.0%
!! AATATCCTGATCATAAAAAT+TGG + chr5.1:71850016-71850035 None:intergenic 20.0%
!! AATTGGAAATTTGATCAATT+AGG + chr5.1:71849999-71850018 None:intergenic 20.0%
!! AGATCTAAAGATTAATGTAT+TGG - chr5.1:71850637-71850656 MS.gene017025:CDS 20.0%
!! ATTTGATTAGATTATAGATC+TGG - chr5.1:71849936-71849955 MS.gene017025:CDS 20.0%
!! CCAAAATAAAAAATGAAAAG+AGG + chr5.1:71849866-71849885 None:intergenic 20.0%
!! GAATGGTATATTATTTGATA+TGG - chr5.1:71851779-71851798 MS.gene017025:intron 20.0%
!! TCTAATAAAAAAGATCAACA+AGG + chr5.1:71852471-71852490 None:intergenic 20.0%
!! TTTATTAGACACATTATTGA+AGG - chr5.1:71852482-71852501 MS.gene017025:intron 20.0%
!!! AATTTCCAATTTTTATGATC+AGG - chr5.1:71850008-71850027 MS.gene017025:CDS 20.0%
!!! AGTTCTTATTTATACACTAT+TGG - chr5.1:71852524-71852543 MS.gene017025:intron 20.0%
!!! ATTTGTTTGAAGTTTTGTTT+TGG - chr5.1:71852863-71852882 MS.gene017025:intron 20.0%
!!! CCTCTTTTCATTTTTTATTT+TGG - chr5.1:71849863-71849882 MS.gene017025:CDS 20.0%
!!! TCAGGGTATTTTTTATATAT+TGG - chr5.1:71850077-71850096 MS.gene017025:CDS 20.0%
!!! TTGAGTTTTGATAAAATGAA+TGG + chr5.1:71852175-71852194 None:intergenic 20.0%
!!! TTTTATTTTAGCATTGAAAG+TGG - chr5.1:71851519-71851538 MS.gene017025:CDS 20.0%
! AATGTTTAAATGAGAAGAAG+AGG + chr5.1:71851274-71851293 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG + chr5.1:71851319-71851338 None:intergenic 25.0%
! AGTTAAAAAATGAACCTTTG+CGG + chr5.1:71849841-71849860 None:intergenic 25.0%
! ATAATATCCTCAATAAAAGC+CGG + chr5.1:71852590-71852609 None:intergenic 25.0%
! ATTCTATATCACTGAAATGT+TGG - chr5.1:71852283-71852302 MS.gene017025:intron 25.0%
! CTAATTGCAATCTATTTCAT+TGG - chr5.1:71850966-71850985 MS.gene017025:CDS 25.0%
! TAAACTTAAGTTACATGTAC+AGG + chr5.1:71850943-71850962 None:intergenic 25.0%
! TACAATGGAATAAAAGTAAG+AGG - chr5.1:71853416-71853435 MS.gene017025:CDS 25.0%
! TTCTATATCACTGAAATGTT+GGG - chr5.1:71852284-71852303 MS.gene017025:intron 25.0%
! TTGGATCGAAATATAGTTTA+TGG - chr5.1:71850656-71850675 MS.gene017025:CDS 25.0%
!! AAAACCATTTTATGCTATCT+TGG - chr5.1:71851068-71851087 MS.gene017025:intron 25.0%
!! AAACCATTTTATGCTATCTT+GGG - chr5.1:71851069-71851088 MS.gene017025:intron 25.0%
!! GCTTTGTTAGAGTTTAAAAT+TGG - chr5.1:71851112-71851131 MS.gene017025:intron 25.0%
!!! AGTTCATTACTTTTTTGTTC+AGG - chr5.1:71851344-71851363 MS.gene017025:intron 25.0%
!!! AGTTTTGATAAAATGAATGG+TGG + chr5.1:71852172-71852191 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG - chr5.1:71851902-71851921 MS.gene017025:CDS 25.0%
!!! CATTTTAGAAGATAAAGTGT+GGG - chr5.1:71853485-71853504 MS.gene017025:intron 25.0%
!!! GTGTTTTTTTTGACATGTTT+TGG - chr5.1:71850253-71850272 MS.gene017025:intron 25.0%
!!! TAGATTATAGATCTGGTTTT+AGG - chr5.1:71849943-71849962 MS.gene017025:CDS 25.0%
!!! TTGTTGTATTTTGGTTCAAT+AGG - chr5.1:71851018-71851037 MS.gene017025:CDS 25.0%
!!! TTTGATGATACCTATTTTCA+GGG - chr5.1:71852927-71852946 MS.gene017025:intron 25.0%
AAGACCTAGATAAACTATGA+GGG - chr5.1:71850601-71850620 MS.gene017025:CDS 30.0%
AAGATAGTTAGGGGATATAA+TGG - chr5.1:71852955-71852974 MS.gene017025:intron 30.0%
ATTGGTAAAAAACGGGAATA+GGG - chr5.1:71850095-71850114 MS.gene017025:intron 30.0%
CTTTCTTAATCTTCACAAAG+CGG - chr5.1:71853224-71853243 MS.gene017025:intron 30.0%
GGTACAGATATTAATTCACT+AGG - chr5.1:71853714-71853733 MS.gene017025:intron 30.0%
GTTAAAAAATGAACCTTTGC+GGG + chr5.1:71849840-71849859 None:intergenic 30.0%
TAACCCAAGATAGCATAAAA+TGG + chr5.1:71851075-71851094 None:intergenic 30.0%
TATTGGTAAAAAACGGGAAT+AGG - chr5.1:71850094-71850113 MS.gene017025:intron 30.0%
TGAAGGACACAATTATTAAG+TGG - chr5.1:71852499-71852518 MS.gene017025:intron 30.0%
TGTGAGTATATGAAACCATA+CGG + chr5.1:71852657-71852676 None:intergenic 30.0%
TTTCCAAATCATGATCGTAT+AGG + chr5.1:71851650-71851669 None:intergenic 30.0%
! AGACATTTTCTCAATGTCTT+TGG + chr5.1:71853292-71853311 None:intergenic 30.0%
! ATTCACACTGATTACTCATT+TGG - chr5.1:71851405-71851424 MS.gene017025:intron 30.0%
! TAATGATATGCCATTTGTAC+CGG - chr5.1:71852568-71852587 MS.gene017025:intron 30.0%
! TACACTTCAACAACGTATTT+TGG - chr5.1:71853148-71853167 MS.gene017025:intron 30.0%
! TATACGATCATGATTTGGAA+AGG - chr5.1:71851649-71851668 MS.gene017025:intron 30.0%
! TGATTGCGATTGTTGTATTT+TGG - chr5.1:71851009-71851028 MS.gene017025:CDS 30.0%
!! CTTTGATGATACCTATTTTC+AGG - chr5.1:71852926-71852945 MS.gene017025:intron 30.0%
!! GCATTTTAGAAGATAAAGTG+TGG - chr5.1:71853484-71853503 MS.gene017025:intron 30.0%
!!! ACACTATTGGTTTGAGTTTT+AGG - chr5.1:71852537-71852556 MS.gene017025:intron 30.0%
!!! CATAAATATTTTTTACGCGG+TGG - chr5.1:71852404-71852423 MS.gene017025:CDS 30.0%
AAACCGTGTTCAAGATGTTT+GGG - chr5.1:71852323-71852342 MS.gene017025:intron 35.0%
AAACTCAAATTCGTTGATGC+AGG - chr5.1:71852187-71852206 MS.gene017025:CDS 35.0%
AAAGTGGCTGATTATGATTC+AGG - chr5.1:71851535-71851554 MS.gene017025:CDS 35.0%
ACAAGGACAAAGAACTGAAA+TGG + chr5.1:71852454-71852473 None:intergenic 35.0%
ACTTCATGATGCTTCATTTC+AGG - chr5.1:71850435-71850454 MS.gene017025:CDS 35.0%
ATATGTCACCATGTGGAAAT+GGG + chr5.1:71851191-71851210 None:intergenic 35.0%
ATCATCAAAGCCAGTTAGTT+TGG + chr5.1:71852916-71852935 None:intergenic 35.0%
ATTCTGTAGCCTACAAAACA+TGG + chr5.1:71853598-71853617 None:intergenic 35.0%
CAAATACGAGATATCAGAAG+TGG + chr5.1:71853972-71853991 None:intergenic 35.0%
CAACGAGTGTATTACATACA+GGG - chr5.1:71853826-71853845 MS.gene017025:intron 35.0%
GAAGACCTAGATAAACTATG+AGG - chr5.1:71850600-71850619 MS.gene017025:CDS 35.0%
GAGATACTGAATCTGCATAA+AGG + chr5.1:71853682-71853701 None:intergenic 35.0%
GATTAATAAGTGACTCCGTA+TGG - chr5.1:71852639-71852658 MS.gene017025:intron 35.0%
GCTATGCACAGAAACATAAA+TGG + chr5.1:71853635-71853654 None:intergenic 35.0%
GTAACCAGGTATATAGAGAA+GGG + chr5.1:71852737-71852756 None:intergenic 35.0%
GTTTCCCTCATAGTTTATCT+AGG + chr5.1:71850608-71850627 None:intergenic 35.0%
GTTTGGTAAACCAACAAAAC+AGG + chr5.1:71852899-71852918 None:intergenic 35.0%
TAAAAGTAAGAGGTTCAGAG+TGG - chr5.1:71853426-71853445 MS.gene017025:CDS 35.0%
TCAAACCAAACCATACCTTT+GGG - chr5.1:71851158-71851177 MS.gene017025:intron 35.0%
TCAATAAAAGCCGGTACAAA+TGG + chr5.1:71852581-71852600 None:intergenic 35.0%
TCAGTGGTATTTATGCAGAA+TGG - chr5.1:71852236-71852255 MS.gene017025:intron 35.0%
TCGACACTGGTAATAATTTG+AGG - chr5.1:71850534-71850553 MS.gene017025:CDS 35.0%
TGAAGGTGACTACTGAAAAT+GGG - chr5.1:71852980-71852999 MS.gene017025:intron 35.0%
TGGTATTTATGCAGAATGGA+GGG - chr5.1:71852240-71852259 MS.gene017025:intron 35.0%
TGTAACCAGGTATATAGAGA+AGG + chr5.1:71852738-71852757 None:intergenic 35.0%
TGTCCTATACGATCATGATT+TGG - chr5.1:71851644-71851663 MS.gene017025:intron 35.0%
TGTTGTTGTACTGTCTATGT+AGG - chr5.1:71850319-71850338 MS.gene017025:intron 35.0%
TTCTCTATATACCTGGTTAC+AGG - chr5.1:71852737-71852756 MS.gene017025:intron 35.0%
TTGGGTTATACAACTTCACT+TGG - chr5.1:71851087-71851106 MS.gene017025:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG - chr5.1:71852886-71852905 MS.gene017025:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG + chr5.1:71852091-71852110 None:intergenic 35.0%
! ATGTGTACTGTCTAGTTTAG+AGG - chr5.1:71853556-71853575 MS.gene017025:intron 35.0%
! TCTCTTGAACCATGTTTTGT+AGG - chr5.1:71853586-71853605 MS.gene017025:intron 35.0%
! TGTTTCTGTGCATAGCTATA+TGG - chr5.1:71853639-71853658 MS.gene017025:intron 35.0%
!! TGATTATGATTCAGGTTGCA+TGG - chr5.1:71851543-71851562 MS.gene017025:CDS 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG - chr5.1:71852903-71852922 MS.gene017025:intron 35.0%
!! TTGGTTCCTCTAAAGTGATA+GGG - chr5.1:71853451-71853470 MS.gene017025:intron 35.0%
!! TTTGGTTCCTCTAAAGTGAT+AGG - chr5.1:71853450-71853469 MS.gene017025:intron 35.0%
!!! ATTTGTACCGGCTTTTATTG+AGG - chr5.1:71852580-71852599 MS.gene017025:intron 35.0%
AAATGAACCTTTGCGGGAAT+TGG + chr5.1:71849834-71849853 None:intergenic 40.0%
AAATGTTGGGACCAGGTAAT+TGG - chr5.1:71852297-71852316 MS.gene017025:intron 40.0%
AACCCCAAACATCTTGAACA+CGG + chr5.1:71852329-71852348 None:intergenic 40.0%
AACCGTGTTCAAGATGTTTG+GGG - chr5.1:71852324-71852343 MS.gene017025:intron 40.0%
AATGAACCTTTGCGGGAATT+GGG + chr5.1:71849833-71849852 None:intergenic 40.0%
ACACTGACACTTCAGATTGA+AGG + chr5.1:71850764-71850783 None:intergenic 40.0%
ACTTCTGTAACCAACTCTTG+TGG + chr5.1:71851873-71851892 None:intergenic 40.0%
AGATATATTCCAGCCAGAGT+TGG - chr5.1:71853929-71853948 MS.gene017025:intron 40.0%
AGATTCAGTATCTCGTGTCT+CGG - chr5.1:71853688-71853707 MS.gene017025:intron 40.0%
AGTTTGCAATGAGAATCCTC+TGG - chr5.1:71851566-71851585 MS.gene017025:CDS 40.0%
ATACCATTCAAGATGACCAG+AGG + chr5.1:71851768-71851787 None:intergenic 40.0%
ATCTTTACCATGATGCACCT+AGG + chr5.1:71851443-71851462 None:intergenic 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG + chr5.1:71852940-71852959 None:intergenic 40.0%
ATGCGTGTCCTAGAAAGATA+CGG - chr5.1:71853900-71853919 MS.gene017025:intron 40.0%
ATGGATAGTCGTATCACTAG+AGG - chr5.1:71850572-71850591 MS.gene017025:CDS 40.0%
CAGAGTTATCCTCACAAGTA+CGG + chr5.1:71851626-71851645 None:intergenic 40.0%
CATATGTCACCATGTGGAAA+TGG + chr5.1:71851192-71851211 None:intergenic 40.0%
CCTATAGTTATGACGCAGTT+GGG - chr5.1:71853739-71853758 MS.gene017025:intron 40.0%
CGTGTGAGTATCATTACTCT+TGG + chr5.1:71850514-71850533 None:intergenic 40.0%
CTAAAGTGATAGGGTCTGAA+GGG - chr5.1:71853460-71853479 MS.gene017025:intron 40.0%
CTATCATTGCTGTACCTCTT+GGG - chr5.1:71853025-71853044 MS.gene017025:intron 40.0%
CTTCAGATTGAAGGTTTGTC+TGG + chr5.1:71850755-71850774 None:intergenic 40.0%
GAAACCGTGTTCAAGATGTT+TGG - chr5.1:71852322-71852341 MS.gene017025:intron 40.0%
GAAATGGGAATTTGTCCCAA+AGG + chr5.1:71851176-71851195 None:intergenic 40.0%
GAATCAAGTTCCACAAGAGT+TGG - chr5.1:71851860-71851879 MS.gene017025:intron 40.0%
GAATGCTTCAATCTTTCCTC+TGG - chr5.1:71851749-71851768 MS.gene017025:intron 40.0%
GACAAATTCCCATTTCCACA+TGG - chr5.1:71851180-71851199 MS.gene017025:intron 40.0%
GAGGAGAGTAGATAAGATGA+TGG - chr5.1:71850553-71850572 MS.gene017025:CDS 40.0%
GCAACGAGTGTATTACATAC+AGG - chr5.1:71853825-71853844 MS.gene017025:intron 40.0%
GCTAATAATGACCTCAGTTC+TGG + chr5.1:71852129-71852148 None:intergenic 40.0%
GTAGTTGCTGAGACATCTTA+TGG - chr5.1:71853192-71853211 MS.gene017025:intron 40.0%
GTCAAACCAAACCATACCTT+TGG - chr5.1:71851157-71851176 MS.gene017025:intron 40.0%
GTGAAGGTGACTACTGAAAA+TGG - chr5.1:71852979-71852998 MS.gene017025:intron 40.0%
GTGGTATTTATGCAGAATGG+AGG - chr5.1:71852239-71852258 MS.gene017025:intron 40.0%
GTTATACATACCCTAGCCAA+GGG - chr5.1:71852810-71852829 MS.gene017025:intron 40.0%
TATCATTGCTGTACCTCTTG+GGG - chr5.1:71853026-71853045 MS.gene017025:intron 40.0%
TATGCGCTCTTTGATATGGA+GGG - chr5.1:71851837-71851856 MS.gene017025:intron 40.0%
TCAAATTCGTTGATGCAGGT+TGG - chr5.1:71852191-71852210 MS.gene017025:CDS 40.0%
TCACCGTCTGTTATTGTCAT+AGG - chr5.1:71850379-71850398 MS.gene017025:intron 40.0%
TCCTATAGTTATGACGCAGT+TGG - chr5.1:71853738-71853757 MS.gene017025:intron 40.0%
TCTTTCCAATCTGGAAGCTT+TGG + chr5.1:71853081-71853100 None:intergenic 40.0%
TGCATACTCTACTGGAACAA+TGG - chr5.1:71853860-71853879 MS.gene017025:intron 40.0%
TGTGTTCATATGTCACCATG+TGG + chr5.1:71851198-71851217 None:intergenic 40.0%
TGTTATACATACCCTAGCCA+AGG - chr5.1:71852809-71852828 MS.gene017025:intron 40.0%
TTACATACAGGGTCTGTTCA+TGG - chr5.1:71853837-71853856 MS.gene017025:intron 40.0%
TTCAGACCCTATCACTTTAG+AGG + chr5.1:71853460-71853479 None:intergenic 40.0%
TTGAAAGAAAGCCAGAACTG+AGG - chr5.1:71852115-71852134 MS.gene017025:intron 40.0%
TTGGCTAGGGTATGTATAAC+AGG + chr5.1:71852810-71852829 None:intergenic 40.0%
TTTCCTCTGGTCATCTTGAA+TGG - chr5.1:71851762-71851781 MS.gene017025:intron 40.0%
! ACAATGTGTGTCTTCGAGTT+TGG - chr5.1:71850811-71850830 MS.gene017025:CDS 40.0%
! ACACACATTGTGTATTGACG+TGG + chr5.1:71850802-71850821 None:intergenic 40.0%
! ATGAAGCATCATGAAGTGCA+CGG + chr5.1:71850432-71850451 None:intergenic 40.0%
! CAAGAGTTGGTTACAGAAGT+TGG - chr5.1:71851873-71851892 MS.gene017025:intron 40.0%
! TAAGAGGTTCAGAGTGGATT+TGG - chr5.1:71853432-71853451 MS.gene017025:CDS 40.0%
! TAGGGGATATAATGGAGTGA+AGG - chr5.1:71852963-71852982 MS.gene017025:intron 40.0%
! TCTAAAGTGATAGGGTCTGA+AGG - chr5.1:71853459-71853478 MS.gene017025:intron 40.0%
! TGTGTGTCTGTTATTTGCTG+TGG - chr5.1:71850864-71850883 MS.gene017025:intron 40.0%
! TTCTTGTTTACATGCCTGCT+GGG - chr5.1:71853259-71853278 MS.gene017025:intron 40.0%
! TTTGTCCCAAAGGTATGGTT+TGG + chr5.1:71851166-71851185 None:intergenic 40.0%
!! GTGTGTCTGTTATTTGCTGT+GGG - chr5.1:71850865-71850884 MS.gene017025:intron 40.0%
!!! AGATCTGGTTTTAGGATCGT+GGG - chr5.1:71849951-71849970 MS.gene017025:CDS 40.0%
!!! AGGTCGTTCTTTTAGAATCC+CGG - chr5.1:71851364-71851383 MS.gene017025:intron 40.0%
!!! TAGATCTGGTTTTAGGATCG+TGG - chr5.1:71849950-71849969 MS.gene017025:CDS 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG - chr5.1:71851423-71851442 MS.gene017025:intron 40.0%
AACCTCTCATACAGACCATG+CGG + chr5.1:71853768-71853787 None:intergenic 45.0%
AAGCTGCCATTGCTGATATC+GGG - chr5.1:71853100-71853119 MS.gene017025:intron 45.0%
AAGGTTTGTCTGGCATACGA+GGG + chr5.1:71850745-71850764 None:intergenic 45.0%
AATGTCAAGACCCTTGGCTA+GGG + chr5.1:71852823-71852842 None:intergenic 45.0%
ACCTCTTTACCGTACTTGTG+AGG - chr5.1:71851614-71851633 MS.gene017025:intron 45.0%
ACTAATCCCAATTCCCGCAA+AGG - chr5.1:71849824-71849843 MS.gene017025:CDS 45.0%
AGGGCGACAAAGATAGTTAG+GGG - chr5.1:71852946-71852965 MS.gene017025:intron 45.0%
AGTCGTATCACTAGAGGTAG+AGG - chr5.1:71850578-71850597 MS.gene017025:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG - chr5.1:71852290-71852309 MS.gene017025:intron 45.0%
ATGCGCTCTTTGATATGGAG+GGG - chr5.1:71851838-71851857 MS.gene017025:intron 45.0%
ATGGCAGCTTCTTTCCAATC+TGG + chr5.1:71853090-71853109 None:intergenic 45.0%
ATGGTCTGTATGAGAGGTTG+CGG - chr5.1:71853769-71853788 MS.gene017025:intron 45.0%
ATTTATGCAGAATGGAGGGC+TGG - chr5.1:71852244-71852263 MS.gene017025:intron 45.0%
CACGGTTTCTTCCAATTACC+TGG + chr5.1:71852311-71852330 None:intergenic 45.0%
CAGCTATGCGCTCTTTGATA+TGG - chr5.1:71851833-71851852 MS.gene017025:intron 45.0%
CAGGGCGACAAAGATAGTTA+GGG - chr5.1:71852945-71852964 MS.gene017025:intron 45.0%
CCACTTAGTGGGATAAGACT+GGG - chr5.1:71850703-71850722 MS.gene017025:CDS 45.0%
CCCAACTGCGTCATAACTAT+AGG + chr5.1:71853742-71853761 None:intergenic 45.0%
CCGCCTATGACAATAACAGA+CGG + chr5.1:71850385-71850404 None:intergenic 45.0%
CCGTCTGTTATTGTCATAGG+CGG - chr5.1:71850382-71850401 MS.gene017025:intron 45.0%
CGGGAATAGGGTTTGAAAAG+TGG - chr5.1:71850107-71850126 MS.gene017025:intron 45.0%
CTAGGGTATGTATAACAGGC+AGG + chr5.1:71852806-71852825 None:intergenic 45.0%
CTAGTTCCCCGTATCTTTCT+AGG + chr5.1:71853911-71853930 None:intergenic 45.0%
CTATGCGCTCTTTGATATGG+AGG - chr5.1:71851836-71851855 MS.gene017025:intron 45.0%
CTCACCCTTCTCTATATACC+TGG - chr5.1:71852730-71852749 MS.gene017025:intron 45.0%
CTTAATCTTCACAAAGCGGC+AGG - chr5.1:71853228-71853247 MS.gene017025:intron 45.0%
CTTATCCCACTAAGTGGGAT+CGG + chr5.1:71850700-71850719 None:intergenic 45.0%
GAAGCTGCCATTGCTGATAT+CGG - chr5.1:71853099-71853118 MS.gene017025:intron 45.0%
GAGCAATTCTTCCTGTAACC+AGG + chr5.1:71852751-71852770 None:intergenic 45.0%
GCAGACAGATAATGTACGAC+AGG - chr5.1:71852047-71852066 MS.gene017025:intron 45.0%
GCAGGCATGTAAACAAGAAC+AGG + chr5.1:71853258-71853277 None:intergenic 45.0%
GCTATCATTGCTGTACCTCT+TGG - chr5.1:71853024-71853043 MS.gene017025:intron 45.0%
GGGAATTTGTCCCAAAGGTA+TGG + chr5.1:71851171-71851190 None:intergenic 45.0%
GTTCATGGTGCATACTCTAC+TGG - chr5.1:71853852-71853871 MS.gene017025:intron 45.0%
TAGCCAAGGGTCTTGACATT+CGG - chr5.1:71852823-71852842 MS.gene017025:intron 45.0%
TCAGGGCGACAAAGATAGTT+AGG - chr5.1:71852944-71852963 MS.gene017025:intron 45.0%
TCCTCACAAGTACGGTAAAG+AGG + chr5.1:71851618-71851637 None:intergenic 45.0%
TCTGTTATTGTCATAGGCGG+TGG - chr5.1:71850385-71850404 MS.gene017025:intron 45.0%
TGCGTGTCCTAGAAAGATAC+GGG - chr5.1:71853901-71853920 MS.gene017025:intron 45.0%
TTACAGGAAGAATTGCTCCC+TGG - chr5.1:71852753-71852772 MS.gene017025:intron 45.0%
TTAGAATCCCGGGATAGACT+TGG - chr5.1:71851375-71851394 MS.gene017025:intron 45.0%
TTGAGCCAAAGCTTCCAGAT+TGG - chr5.1:71853073-71853092 MS.gene017025:intron 45.0%
TTTGCTTTCAGTACCCCAAG+AGG + chr5.1:71853042-71853061 None:intergenic 45.0%
! AATCCTCTGGCTCCATTGAT+TGG - chr5.1:71851579-71851598 MS.gene017025:intron 45.0%
! AATTCGTTGATGCAGGTTGG+AGG - chr5.1:71852194-71852213 MS.gene017025:CDS 45.0%
! AGTTACCGGTGAAGAAGCAT+CGG + chr5.1:71853364-71853383 None:intergenic 45.0%
! ATCCTCTGGCTCCATTGATT+GGG - chr5.1:71851580-71851599 MS.gene017025:intron 45.0%
! ATTCGTTGATGCAGGTTGGA+GGG - chr5.1:71852195-71852214 MS.gene017025:CDS 45.0%
! CCAGTCTTATCCCACTAAGT+GGG + chr5.1:71850705-71850724 None:intergenic 45.0%
! GTGGACTGAGGATTCATGTA+TGG - chr5.1:71852423-71852442 MS.gene017025:intron 45.0%
! GTTCTTGTTTACATGCCTGC+TGG - chr5.1:71853258-71853277 MS.gene017025:intron 45.0%
! TGAAGCATCATGAAGTGCAC+GGG + chr5.1:71850431-71850450 None:intergenic 45.0%
! TTTCACACAAGGTGCTTCAG+TGG - chr5.1:71852220-71852239 MS.gene017025:CDS 45.0%
!! TGGTCATGGTCTTATGGTCA+GGG - chr5.1:71852776-71852795 MS.gene017025:intron 45.0%
!!! ATTTTTTACGCGGTGGACTG+AGG - chr5.1:71852411-71852430 MS.gene017025:CDS 45.0%
!!! CAACGTATTTTGGCCCAATG+TGG - chr5.1:71853158-71853177 MS.gene017025:intron 45.0%
!!! GGTCGTTCTTTTAGAATCCC+GGG - chr5.1:71851365-71851384 MS.gene017025:intron 45.0%
AACCGCATGGTCTGTATGAG+AGG - chr5.1:71853763-71853782 MS.gene017025:intron 50.0%
AAGGGTCTTGACATTCGGCT+GGG - chr5.1:71852828-71852847 MS.gene017025:intron 50.0%
ACCATAAGACCATGACCACC+AGG + chr5.1:71852774-71852793 None:intergenic 50.0%
ACTAAGTGGGATCGGCTACA+TGG + chr5.1:71850692-71850711 None:intergenic 50.0%
ACTCCCAGGAACTCCACATT+GGG + chr5.1:71853174-71853193 None:intergenic 50.0%
ACTGAACCCTCTTCCAACTC+TGG + chr5.1:71853945-71853964 None:intergenic 50.0%
AGCTGCCATTGCTGATATCG+GGG - chr5.1:71853101-71853120 MS.gene017025:intron 50.0%
ATAACAGACGGTGACCTTCG+AGG + chr5.1:71850373-71850392 None:intergenic 50.0%
ATGTAGCCGATCCCACTTAG+TGG - chr5.1:71850691-71850710 MS.gene017025:CDS 50.0%
ATGTCTCAGCAACTACTCCC+AGG + chr5.1:71853188-71853207 None:intergenic 50.0%
ATGTTGATCAGCAGCCTCGA+AGG - chr5.1:71850356-71850375 MS.gene017025:intron 50.0%
ATTCCAGCCAGAGTTGGAAG+AGG - chr5.1:71853935-71853954 MS.gene017025:intron 50.0%
CATGATGCACCTAGGTCAAC+AGG + chr5.1:71851435-71851454 None:intergenic 50.0%
CCATAAGACCATGACCACCA+GGG + chr5.1:71852773-71852792 None:intergenic 50.0%
CCCACTTAGTGGGATAAGAC+TGG - chr5.1:71850702-71850721 MS.gene017025:CDS 50.0%
CTGTTGACCTAGGTGCATCA+TGG - chr5.1:71851433-71851452 MS.gene017025:intron 50.0%
GAAGGTTTGTCTGGCATACG+AGG + chr5.1:71850746-71850765 None:intergenic 50.0%
GAATGTCAAGACCCTTGGCT+AGG + chr5.1:71852824-71852843 None:intergenic 50.0%
GCGTGTCCTAGAAAGATACG+GGG - chr5.1:71853902-71853921 MS.gene017025:intron 50.0%
TACTCCCAGGAACTCCACAT+TGG + chr5.1:71853175-71853194 None:intergenic 50.0%
TACTGGAACAATGGCTGCTG+AGG - chr5.1:71853869-71853888 MS.gene017025:intron 50.0%
TATTGTCATAGGCGGTGGCA+TGG - chr5.1:71850390-71850409 MS.gene017025:intron 50.0%
TCAGTATCTCGTGTCTCGGT+GGG - chr5.1:71853692-71853711 MS.gene017025:intron 50.0%
TCCAACCCCGATATCAGCAA+TGG + chr5.1:71853109-71853128 None:intergenic 50.0%
TGATACTCACACGTCGACAC+TGG - chr5.1:71850521-71850540 MS.gene017025:CDS 50.0%
TGGTCTGTATGAGAGGTTGC+GGG - chr5.1:71853770-71853789 MS.gene017025:intron 50.0%
TGTAGCCGATCCCACTTAGT+GGG - chr5.1:71850692-71850711 MS.gene017025:CDS 50.0%
TTCAGTATCTCGTGTCTCGG+TGG - chr5.1:71853691-71853710 MS.gene017025:intron 50.0%
TTCCAGCCAGAGTTGGAAGA+GGG - chr5.1:71853936-71853955 MS.gene017025:intron 50.0%
TTCTGCCACCAAGTCTATCC+CGG + chr5.1:71851386-71851405 None:intergenic 50.0%
TTGTTTACATGCCTGCTGGG+CGG - chr5.1:71853262-71853281 MS.gene017025:intron 50.0%
! CCCAGTCTTATCCCACTAAG+TGG + chr5.1:71850706-71850725 None:intergenic 50.0%
! TTCGTTGATGCAGGTTGGAG+GGG - chr5.1:71852196-71852215 MS.gene017025:CDS 50.0%
!! GGTCATGGTCTTATGGTCAG+GGG - chr5.1:71852777-71852796 MS.gene017025:intron 50.0%
!! GTGGTCATGGTCTTATGGTC+AGG - chr5.1:71852775-71852794 MS.gene017025:intron 50.0%
!! GTTACCGGTGAAGAAGCATC+GGG + chr5.1:71853363-71853382 None:intergenic 50.0%
AACCCTCTTCCAACTCTGGC+TGG + chr5.1:71853941-71853960 None:intergenic 55.0%
AGGGTCTTGACATTCGGCTG+GGG - chr5.1:71852829-71852848 MS.gene017025:intron 55.0%
AGTCCCAGCCTCCCAATCAA+TGG + chr5.1:71851594-71851613 None:intergenic 55.0%
CAAGGGTCTTGACATTCGGC+TGG - chr5.1:71852827-71852846 MS.gene017025:intron 55.0%
CAGCCGAATGTCAAGACCCT+TGG + chr5.1:71852829-71852848 None:intergenic 55.0%
CAGGAAGAATTGCTCCCTGG+TGG - chr5.1:71852756-71852775 MS.gene017025:intron 55.0%
CAGTATCTCGTGTCTCGGTG+GGG - chr5.1:71853693-71853712 MS.gene017025:intron 55.0%
CCTTCCCGATGCTTCTTCAC+CGG - chr5.1:71853356-71853375 MS.gene017025:CDS 55.0%
CTCCCAATCAATGGAGCCAG+AGG + chr5.1:71851585-71851604 None:intergenic 55.0%
GAATCCCGGGATAGACTTGG+TGG - chr5.1:71851378-71851397 MS.gene017025:intron 55.0%
GAATTGCTCCCTGGTGGTCA+TGG - chr5.1:71852762-71852781 MS.gene017025:intron 55.0%
GCCATTGCTGATATCGGGGT+TGG - chr5.1:71853105-71853124 MS.gene017025:intron 55.0%
GTTGGAGGGGCTTTCACACA+AGG - chr5.1:71852209-71852228 MS.gene017025:CDS 55.0%
TCTGCCACCAAGTCTATCCC+GGG + chr5.1:71851385-71851404 None:intergenic 55.0%
TGGCCCAATGTGGAGTTCCT+GGG - chr5.1:71853168-71853187 MS.gene017025:intron 55.0%
TTGGCCCAATGTGGAGTTCC+TGG - chr5.1:71853167-71853186 MS.gene017025:intron 55.0%
! CCCTGGTGGTCATGGTCTTA+TGG - chr5.1:71852770-71852789 MS.gene017025:intron 55.0%
! CTCTGGCTCCATTGATTGGG+AGG - chr5.1:71851583-71851602 MS.gene017025:intron 55.0%
! GCTCCATTGATTGGGAGGCT+GGG - chr5.1:71851588-71851607 MS.gene017025:intron 55.0%
! GTGTCTTCGAGTTTGGCTCG+TGG - chr5.1:71850818-71850837 MS.gene017025:CDS 55.0%
CAATGGCTGCTGAGGACTGC+AGG - chr5.1:71853877-71853896 MS.gene017025:intron 60.0%
GACGCAGTTGGGAAACCGCA+TGG - chr5.1:71853750-71853769 MS.gene017025:intron 60.0%
TCATAGGCGGTGGCATGGCT+GGG - chr5.1:71850395-71850414 MS.gene017025:intron 60.0%
TTGACATTCGGCTGGGGCAC+AGG - chr5.1:71852835-71852854 MS.gene017025:intron 60.0%
! GGCTCCATTGATTGGGAGGC+TGG - chr5.1:71851587-71851606 MS.gene017025:intron 60.0%
!! CCGGTGAAGAAGCATCGGGA+AGG + chr5.1:71853359-71853378 None:intergenic 60.0%
GTCATAGGCGGTGGCATGGC+TGG - chr5.1:71850394-71850413 MS.gene017025:intron 65.0%
TTACATGCCTGCTGGGCGGC+TGG - chr5.1:71853266-71853285 MS.gene017025:intron 65.0%
TCTTTGGCCAGCCGCCCAGC+AGG + chr5.1:71853276-71853295 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 71849806 71853992 71849806 ID=MS.gene017025
chr5.1 mRNA 71849806 71853992 71849806 ID=MS.gene017025.t1;Parent=MS.gene017025
chr5.1 exon 71853953 71853992 71853953 ID=MS.gene017025.t1.exon1;Parent=MS.gene017025.t1
chr5.1 CDS 71853953 71853992 71853953 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71853342 71853457 71853342 ID=MS.gene017025.t1.exon2;Parent=MS.gene017025.t1
chr5.1 CDS 71853342 71853457 71853342 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71852344 71852432 71852344 ID=MS.gene017025.t1.exon3;Parent=MS.gene017025.t1
chr5.1 CDS 71852344 71852432 71852344 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71852128 71852241 71852128 ID=MS.gene017025.t1.exon4;Parent=MS.gene017025.t1
chr5.1 CDS 71852128 71852241 71852128 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71851875 71851962 71851875 ID=MS.gene017025.t1.exon5;Parent=MS.gene017025.t1
chr5.1 CDS 71851875 71851962 71851875 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71851662 71851747 71851662 ID=MS.gene017025.t1.exon6;Parent=MS.gene017025.t1
chr5.1 CDS 71851662 71851747 71851662 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71851487 71851589 71851487 ID=MS.gene017025.t1.exon7;Parent=MS.gene017025.t1
chr5.1 CDS 71851487 71851589 71851487 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71850942 71851039 71850942 ID=MS.gene017025.t1.exon8;Parent=MS.gene017025.t1
chr5.1 CDS 71850942 71851039 71850942 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71850421 71850850 71850421 ID=MS.gene017025.t1.exon9;Parent=MS.gene017025.t1
chr5.1 CDS 71850421 71850850 71850421 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
chr5.1 exon 71849806 71850108 71849806 ID=MS.gene017025.t1.exon10;Parent=MS.gene017025.t1
chr5.1 CDS 71849806 71850108 71849806 ID=cds.MS.gene017025.t1;Parent=MS.gene017025.t1
Gene Sequence

>MS.gene017025

ATGGAGTCACGAATTAAGACTAATCCCAATTCCCGCAAAGGTTCATTTTTTAACTATCCTCTTTTCATTTTTTATTTTGGTTTATAAATGTTTATGCTTTTTTTTTTTGTTCTGAATTTGGTAATAATTTATTTGATTAGATTATAGATCTGGTTTTAGGATCGTGGGCTTTAATTTCGCTATTTTTACTCCTAATTGATCAAATTTCCAATTTTTATGATCAGGATATTTTTTATACATTCCTAATTGATTAAATTTCTAATTTTTATGATCAGGGTATTTTTTATATATTGGTAAAAAACGGGAATAGGGTTTGAAAAGTGGAAAAAAAAGTGATAAATCATTTGGGTCGTTGTCATCATAGAATCTGATAAATGATGAATAATTCAAAGAGTTGTATTGGTTTGTTTCTAATAGAGATTTGATGTGTTTTTGTGTCTGATAATTGTGTTTTTTTTGACATGTTTTGGTTCTATTTATGCGTTTATGTTTGTTATTGACTTTGATTTTTATTGTTGTTGTACTGTCTATGTAGGTTTGTGCTATGTCAATGTTGATCAGCAGCCTCGAAGGTCACCGTCTGTTATTGTCATAGGCGGTGGCATGGCTGGGATTGCTGCTGCCCGTGCACTTCATGATGCTTCATTTCAGGTATTCAAGCAAATGATATAGCTGATAACTTTATTTTACTTACTATTCAGTTTGCCAAGAGTAATGATACTCACACGTCGACACTGGTAATAATTTGAGGAGAGTAGATAAGATGATGGATAGTCGTATCACTAGAGGTAGAGGAAGACCTAGATAAACTATGAGGGAAACTATTAAGAAAGATCTAAAGATTAATGTATTGGATCGAAATATAGTTTATGGCGTAATTTATCCATGTAGCCGATCCCACTTAGTGGGATAAGACTGGGTCGTTGTTGCTTGTGTCCCTCGTATGCCAGACAAACCTTCAATCTGAAGTGTCAGTGTTTTATAGATTACATGCCACGTCAATACACAATGTGTGTCTTCGAGTTTGGCTCGTGGCTATATGAATATGACTACAATTATGTGTGTCTGTTATTTGCTGTGGGTTGTTAGTTATGTCTACTAATTGAAGATTGAAGATGATTAAGAATTAAATGTCCTGTACATGTAACTTAAGTTTAATGCTAATTGCAATCTATTTCATTGGAAATATTTGCAACTCATTTATGATTGCGATTGTTGTATTTTGGTTCAATAGGTTATCTTAAAGTAAAAGTAGCTTGTTTAAAACCATTTTATGCTATCTTGGGTTATACAACTTCACTTGGTTGCTTTGTTAGAGTTTAAAATTGGATTTGACTGTTTTTGTACTTTAGTCAAACCAAACCATACCTTTGGGACAAATTCCCATTTCCACATGGTGACATATGAACACACATATATTTAGCTAATGAAGAGAGACACCATCTCCTTTAATTATTTTGTTTTTCCTCTTCTTCTCATTTAAACATTCGTACTTTTGTATCTATCAGCTCCTTTATTTGTATTGAGAGTTGTACTGAAGTTCATTACTTTTTTGTTCAGGTCGTTCTTTTAGAATCCCGGGATAGACTTGGTGGCAGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTAGGTGCATCATGGTAAAGATTATACTCTTTTTATTCTGATTTTTTCATGTTGACAAAAACGCAAGATTTCTTTCTTTTTTATTTTAGCATTGAAAGTGGCTGATTATGATTCAGGTTGCATGGAGTTTGCAATGAGAATCCTCTGGCTCCATTGATTGGGAGGCTGGGACTACCTCTTTACCGTACTTGTGAGGATAACTCTGTCCTATACGATCATGATTTGGAAAGGTAAATGCATTTTTTGTTATTATTTGGTAGTAGTTATCGATTTCTTCTGTGCTTTTGTAAGTAATTAACGACTACATTGAATGCTTCAATCTTTCCTCTGGTCATCTTGAATGGTATATTATTTGATATGGGATTCTTTGATTCAAAGTTGTCAACTTTTTACAGCTATGCGCTCTTTGATATGGAGGGGAATCAAGTTCCACAAGAGTTGGTTACAGAAGTTGGTAAAACATTTGAAATGATTTTGCAAGAGGTATGTCATTTGTTTATTTGCAAGAGTTAATTGAAATCGCAATTTTTTTTTAATTGAAATCGCAAATGTTTGAGTCAACTTGTTTACAATGAGCATCTCATCTAACAATTGACATTTATTAATGCAGACAGATAATGTACGACAGGAATTCAGCGAAGACATGTCCATTCTTCGTGCACTTTCAATTGTTTTTGAAAGAAAGCCAGAACTGAGGTCATTATTAGCATAAAACTCAAATTCGTTGACCACCATTCATTTTATCAAAACTCAAATTCGTTGATGCAGGTTGGAGGGGCTTTCACACAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGATTCTATATCACTGAAATGTTGGGACCAGGTAATTGGAAGAAACCGTGTTCAAGATGTTTGGGGTTCTATTATTTGTATTGTCTATTTCAAGTTTATGTCATTGAAATTTAAGTTGCATTACATAAATATTTTTTACGCGGTGGACTGAGGATTCATGTATGGTTTTTCCATTTCAGTTCTTTGTCCTTGTTGATCTTTTTTATTAGACACATTATTGAAGGACACAATTATTAAGTGGCAAGTTCTTATTTATACACTATTGGTTTGAGTTTTAGGTTAAATGTTAATGATATGCCATTTGTACCGGCTTTTATTGAGGATATTATAATATTTGATGTAAGGGATATAAAAATGAGATTAATAAGTGACTCCGTATGGTTTCATATACTCACATTATGTTGCGAGTAACTTGTAATCACTACGTGCATTAACATTTTGATGCGTAACTCACCCTTCTCTATATACCTGGTTACAGGAAGAATTGCTCCCTGGTGGTCATGGTCTTATGGTCAGGGGATACCTGCCTGTTATACATACCCTAGCCAAGGGTCTTGACATTCGGCTGGGGCACAGGTATATATTTGTTTGAAGTTTTGTTTTGGAAGTCTTTGTCCTGTTTTGTTGGTTTACCAAACTAACTGGCTTTGATGATACCTATTTTCAGGGCGACAAAGATAGTTAGGGGATATAATGGAGTGAAGGTGACTACTGAAAATGGGAAAACATTTGTTGCTGACGCTGCTATCATTGCTGTACCTCTTGGGGTACTGAAAGCAAATGTAATCAAATTTGAGCCAAAGCTTCCAGATTGGAAAGAAGCTGCCATTGCTGATATCGGGGTTGGAGTTGAGAATAAAATAATTTTACACTTCAACAACGTATTTTGGCCCAATGTGGAGTTCCTGGGAGTAGTTGCTGAGACATCTTATGGATGCAGCTACTTTCTTAATCTTCACAAAGCGGCAGGTCATCCTGTTCTTGTTTACATGCCTGCTGGGCGGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCTAACTTTGCTTTCACACAACTCAAGAAGATCCTTCCCGATGCTTCTTCACCGGTAACTATAATAGTTTTAAATATATTTAACTTGTTTTTTACAATGGAATAAAAGTAAGAGGTTCAGAGTGGATTTGGTTCCTCTAAAGTGATAGGGTCTGAAGGGTGCATTTTAGAAGATAAAGTGTGGGATTGAAACTAATTGATTAGAAAAATTATCACTTGCATTTTACTTTCTAATGTGTACTGTCTAGTTTAGAGGAGTGAAATCTCTTGAACCATGTTTTGTAGGCTACAGAATCTTTAAAATTGAATCCATTTATGTTTCTGTGCATAGCTATATGGCTGAATTGAGTTTGTTTCCTTTATGCAGATTCAGTATCTCGTGTCTCGGTGGGGTACAGATATTAATTCACTAGGTTCCTATAGTTATGACGCAGTTGGGAAACCGCATGGTCTGTATGAGAGGTTGCGGGTTCCTGTAGATAACTTATTCTTTGCAGGGGAAGCAACGAGTGTATTACATACAGGGTCTGTTCATGGTGCATACTCTACTGGAACAATGGCTGCTGAGGACTGCAGGATGCGTGTCCTAGAAAGATACGGGGAACTAGATATATTCCAGCCAGAGTTGGAAGAGGGTTCAGTCATTCCACTTCTGATATCTCGTATTTGA

Protein sequence

>MS.gene017025.t1

MESRIKTNPNSRKGLCYVNVDQQPRRSPSVIVIGGGMAGIAAARALHDASFQVVLLESRDRLGGRIHTDYSFGFPVDLGASWLHGVCNENPLAPLIGRLGLPLYRTCEDNSVLYDHDLESYALFDMEGNQVPQELVTEVGKTFEMILQETDNVRQEFSEDMSILRALSIVFERKPELRLEGLSHKVLQWYLCRMEGWFAADSDSISLKCWDQEELLPGGHGLMVRGYLPVIHTLAKGLDIRLGHRATKIVRGYNGVKVTTENGKTFVADAAIIAVPLGVLKANVIKFEPKLPDWKEAAIADIGVGVENKIILHFNNVFWPNVEFLGVVAETSYGCSYFLNLHKAAGHPVLVYMPAGRLAKDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSRWGTDINSLGSYSYDAVGKPHGLYERLRVPVDNLFFAGEATSVLHTGSVHGAYSTGTMAAEDCRMRVLERYGELDIFQPELEEGSVIPLLISRI