Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038090.t1 | XP_003617318.1 | 99 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 9.00E-285 | 988.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038090.t1 | Q9SKX5 | 78.8 | 490 | 102 | 2 | 1 | 488 | 1 | 490 | 1.7e-231 | 803.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038090.t1 | G7KD02 | 99.0 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 6.5e-285 | 988.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene038090 | MS.gene049679 | PPI |
MS.gene038090 | MS.gene008352 | PPI |
MS.gene47679 | MS.gene038090 | PPI |
MS.gene019144 | MS.gene038090 | PPI |
MS.gene061581 | MS.gene038090 | PPI |
MS.gene46961 | MS.gene038090 | PPI |
MS.gene05030 | MS.gene038090 | PPI |
MS.gene46317 | MS.gene038090 | PPI |
MS.gene038090 | MS.gene92026 | PPI |
MS.gene22232 | MS.gene038090 | PPI |
MS.gene038090 | MS.gene017025 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038090.t1 | MTR_5g090300 | 98.975 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 0.0 | 999 |
MS.gene038090.t1 | MTR_3g449620 | 83.469 | 490 | 79 | 1 | 1 | 488 | 1 | 490 | 0.0 | 818 |
MS.gene038090.t1 | MTR_3g064370 | 64.634 | 492 | 170 | 1 | 1 | 488 | 1 | 492 | 0.0 | 658 |
MS.gene038090.t1 | MTR_3g064370 | 65.060 | 415 | 141 | 1 | 78 | 488 | 1 | 415 | 0.0 | 563 |
MS.gene038090.t1 | MTR_3g064370 | 67.609 | 389 | 126 | 0 | 1 | 389 | 1 | 389 | 0.0 | 555 |
MS.gene038090.t1 | MTR_1g023510 | 34.737 | 475 | 260 | 12 | 30 | 454 | 867 | 1341 | 4.59e-67 | 234 |
MS.gene038090.t1 | MTR_3g113170 | 34.298 | 484 | 273 | 12 | 30 | 476 | 883 | 1358 | 7.44e-67 | 234 |
MS.gene038090.t1 | MTR_3g113170 | 34.298 | 484 | 273 | 12 | 30 | 476 | 883 | 1358 | 9.63e-67 | 233 |
MS.gene038090.t1 | MTR_5g087920 | 76.000 | 125 | 30 | 0 | 280 | 404 | 12 | 136 | 6.29e-60 | 193 |
MS.gene038090.t1 | MTR_6g084700 | 34.904 | 467 | 261 | 15 | 29 | 467 | 221 | 672 | 3.89e-55 | 197 |
MS.gene038090.t1 | MTR_3g055090 | 32.373 | 451 | 259 | 13 | 29 | 454 | 160 | 589 | 1.74e-53 | 192 |
MS.gene038090.t1 | MTR_8g464450 | 31.938 | 454 | 257 | 15 | 29 | 454 | 163 | 592 | 1.92e-42 | 161 |
MS.gene038090.t1 | MTR_1g050535 | 30.716 | 433 | 266 | 12 | 44 | 456 | 225 | 643 | 2.46e-41 | 158 |
MS.gene038090.t1 | MTR_1g050535 | 30.716 | 433 | 266 | 12 | 44 | 456 | 225 | 643 | 3.04e-41 | 158 |
MS.gene038090.t1 | MTR_2g039160 | 26.715 | 554 | 287 | 18 | 26 | 472 | 4 | 545 | 2.63e-33 | 132 |
MS.gene038090.t1 | MTR_3g033000 | 28.009 | 432 | 265 | 15 | 53 | 458 | 33 | 444 | 1.39e-30 | 124 |
MS.gene038090.t1 | MTR_3g033000 | 27.586 | 377 | 231 | 14 | 53 | 407 | 33 | 389 | 8.73e-23 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038090.t1 | AT2G43020 | 78.776 | 490 | 102 | 2 | 1 | 488 | 1 | 490 | 0.0 | 788 |
MS.gene038090.t1 | AT3G59050 | 78.367 | 490 | 102 | 3 | 1 | 488 | 1 | 488 | 0.0 | 781 |
MS.gene038090.t1 | AT1G65840 | 62.474 | 477 | 171 | 2 | 20 | 488 | 21 | 497 | 0.0 | 630 |
MS.gene038090.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene038090.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene038090.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene038090.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene038090.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene038090.t1 | AT1G62830 | 34.475 | 467 | 271 | 14 | 28 | 473 | 266 | 718 | 1.27e-54 | 196 |
MS.gene038090.t1 | AT3G10390 | 32.700 | 474 | 264 | 15 | 14 | 456 | 169 | 618 | 5.24e-50 | 183 |
MS.gene038090.t1 | AT3G10390 | 33.333 | 474 | 261 | 16 | 14 | 456 | 169 | 618 | 1.01e-49 | 182 |
MS.gene038090.t1 | AT3G13682 | 33.966 | 474 | 254 | 14 | 17 | 454 | 140 | 590 | 1.09e-49 | 181 |
MS.gene038090.t1 | AT3G10390 | 32.700 | 474 | 264 | 15 | 14 | 456 | 221 | 670 | 1.39e-49 | 182 |
MS.gene038090.t1 | AT3G10390 | 33.333 | 474 | 261 | 16 | 14 | 456 | 221 | 670 | 1.47e-49 | 182 |
MS.gene038090.t1 | AT5G13700 | 28.125 | 448 | 263 | 15 | 53 | 475 | 30 | 443 | 2.54e-34 | 134 |
MS.gene038090.t1 | AT4G29720 | 23.766 | 547 | 290 | 13 | 26 | 465 | 3 | 529 | 3.10e-34 | 135 |
Find 154 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACACTTCAACAACGTATTT+TGG | 0.147701 | 5.1:-71803666 | MS.gene038090:CDS |
AAATGAACCTTTGCGGGAAT+TGG | 0.219044 | 5.1:+71806983 | None:intergenic |
CTAGTTCCCCGTATCTTTCT+AGG | 0.225042 | 5.1:+71802906 | None:intergenic |
CCCTGGTGGTCATGGTCTTA+TGG | 0.250033 | 5.1:-71804044 | MS.gene038090:CDS |
GTAGATAACTTATTCTTTGC+AGG | 0.258142 | 5.1:-71803016 | MS.gene038090:CDS |
ACTTCATGATGCTTCATTTC+AGG | 0.276706 | 5.1:-71806379 | MS.gene038090:intron |
TTGGCCCAATGTGGAGTTCC+TGG | 0.277098 | 5.1:-71803647 | MS.gene038090:CDS |
CAGCTATGCGCTCTTTGATA+TGG | 0.277998 | 5.1:-71804981 | MS.gene038090:CDS |
GGCTCCATTGATTGGGAGGC+TGG | 0.279036 | 5.1:-71805227 | MS.gene038090:CDS |
GTCATAGGCGGTGGCATGGC+TGG | 0.307377 | 5.1:-71806420 | MS.gene038090:CDS |
CTATCATTGCTGTACCTCTT+GGG | 0.307858 | 5.1:-71803789 | MS.gene038090:CDS |
TCAGGGCGACAAAGATAGTT+AGG | 0.311809 | 5.1:-71803870 | MS.gene038090:intron |
TCTTTCCAATCTGGAAGCTT+TGG | 0.318953 | 5.1:+71803736 | None:intergenic |
GCTAATAATGACCTCAGTTC+TGG | 0.323376 | 5.1:+71804688 | None:intergenic |
ATTCACACTGATTACTCATT+TGG | 0.325638 | 5.1:-71805409 | MS.gene038090:CDS |
GCTATCATTGCTGTACCTCT+TGG | 0.347891 | 5.1:-71803790 | MS.gene038090:CDS |
AATCCTCTGGCTCCATTGAT+TGG | 0.348932 | 5.1:-71805235 | MS.gene038090:CDS |
GAAGCTGCCATTGCTGATAT+CGG | 0.349601 | 5.1:-71803715 | MS.gene038090:CDS |
GTGAAGGTGACTACTGAAAA+TGG | 0.357159 | 5.1:-71803835 | MS.gene038090:CDS |
AAGATAGTTAGGGGATATAA+TGG | 0.370197 | 5.1:-71803859 | MS.gene038090:CDS |
GTTCTTGTTTACATGCCTGC+TGG | 0.371256 | 5.1:-71803556 | MS.gene038090:CDS |
TTACATGCCTGCTGGGCGGC+TGG | 0.383621 | 5.1:-71803548 | MS.gene038090:CDS |
ATGGCAGCTTCTTTCCAATC+TGG | 0.384672 | 5.1:+71803727 | None:intergenic |
ATTCTATATCACTGAAATGT+TGG | 0.387439 | 5.1:-71804531 | MS.gene038090:CDS |
GTGGTCATGGTCTTATGGTC+AGG | 0.387478 | 5.1:-71804039 | MS.gene038090:CDS |
AATGAACCTTTGCGGGAATT+GGG | 0.395567 | 5.1:+71806984 | None:intergenic |
TGTCCTATACGATCATGATT+TGG | 0.402825 | 5.1:-71805170 | MS.gene038090:CDS |
TTGGCTAGGGTATGTATAAC+AGG | 0.405023 | 5.1:+71804007 | None:intergenic |
GTAGTTGCTGAGACATCTTA+TGG | 0.410548 | 5.1:-71803622 | MS.gene038090:CDS |
TCACCGTCTGTTATTGTCAT+AGG | 0.417890 | 5.1:-71806435 | MS.gene038090:CDS |
TCTTTGGCCAGCCGCCCAGC+AGG | 0.424805 | 5.1:+71803541 | None:intergenic |
CAAGGGTCTTGACATTCGGC+TGG | 0.431094 | 5.1:-71803987 | MS.gene038090:CDS |
ATCCTCTGGCTCCATTGATT+GGG | 0.431803 | 5.1:-71805234 | MS.gene038090:CDS |
TTGAGCCAAAGCTTCCAGAT+TGG | 0.433940 | 5.1:-71803741 | MS.gene038090:CDS |
AATTGAAAGTGCACGAAGAA+TGG | 0.438137 | 5.1:+71804726 | None:intergenic |
CCTATAGTTATGACGCAGTT+GGG | 0.440336 | 5.1:-71803075 | MS.gene038090:CDS |
AAGCTGCCATTGCTGATATC+GGG | 0.442969 | 5.1:-71803714 | MS.gene038090:CDS |
GAATTGCTCCCTGGTGGTCA+TGG | 0.446683 | 5.1:-71804052 | MS.gene038090:CDS |
TTTCCAAATCATGATCGTAT+AGG | 0.448434 | 5.1:+71805167 | None:intergenic |
CATGATGCACCTAGGTCAAC+AGG | 0.448585 | 5.1:+71805382 | None:intergenic |
TTCTATATCACTGAAATGTT+GGG | 0.449054 | 5.1:-71804530 | MS.gene038090:CDS |
TTCTTGTTTACATGCCTGCT+GGG | 0.453430 | 5.1:-71803555 | MS.gene038090:CDS |
CAAGAGTTGGTTACAGAAGT+TGG | 0.457743 | 5.1:-71804941 | MS.gene038090:CDS |
CAGGGCGACAAAGATAGTTA+GGG | 0.457896 | 5.1:-71803869 | MS.gene038090:CDS |
TGGCCCAATGTGGAGTTCCT+GGG | 0.459578 | 5.1:-71803646 | MS.gene038090:CDS |
GCTCCATTGATTGGGAGGCT+GGG | 0.462828 | 5.1:-71805226 | MS.gene038090:CDS |
TTGACATTCGGCTGGGGCAC+AGG | 0.462919 | 5.1:-71803979 | MS.gene038090:intron |
GCAGGCATGTAAACAAGAAC+AGG | 0.463011 | 5.1:+71803559 | None:intergenic |
AACCCTCTTCCAACTCTGGC+TGG | 0.467559 | 5.1:+71802876 | None:intergenic |
TTACATACAGGGTCTGTTCA+TGG | 0.475124 | 5.1:-71802977 | MS.gene038090:CDS |
TCAGTATCTCGTGTCTCGGT+GGG | 0.475314 | 5.1:-71803122 | MS.gene038090:CDS |
CCCAACTGCGTCATAACTAT+AGG | 0.475903 | 5.1:+71803075 | None:intergenic |
GCAAAGAATAAGTTATCTAC+AGG | 0.484780 | 5.1:+71803019 | None:intergenic |
CAATGGCTGCTGAGGACTGC+AGG | 0.485843 | 5.1:-71802937 | MS.gene038090:CDS |
GTTCATGGTGCATACTCTAC+TGG | 0.488310 | 5.1:-71802962 | MS.gene038090:CDS |
GCAACGAGTGTATTACATAC+AGG | 0.492456 | 5.1:-71802989 | MS.gene038090:CDS |
TTCTGCCACCAAGTCTATCC+CGG | 0.493984 | 5.1:+71805431 | None:intergenic |
AGTCCCAGCCTCCCAATCAA+TGG | 0.497011 | 5.1:+71805223 | None:intergenic |
TGGTCATGGTCTTATGGTCA+GGG | 0.502310 | 5.1:-71804038 | MS.gene038090:CDS |
TAGATAACTTATTCTTTGCA+GGG | 0.507097 | 5.1:-71803015 | MS.gene038090:CDS |
GCCATTGCTGATATCGGGGT+TGG | 0.507133 | 5.1:-71803709 | MS.gene038090:CDS |
TTCGTTGATGCAGGTTGGAG+GGG | 0.509332 | 5.1:-71804618 | MS.gene038090:intron |
CTGTTGACCTAGGTGCATCA+TGG | 0.509864 | 5.1:-71805381 | MS.gene038090:intron |
CTTAATCTTCACAAAGCGGC+AGG | 0.511464 | 5.1:-71803586 | MS.gene038090:CDS |
TAGCCAAGGGTCTTGACATT+CGG | 0.512251 | 5.1:-71803991 | MS.gene038090:CDS |
CTCTGGCTCCATTGATTGGG+AGG | 0.513671 | 5.1:-71805231 | MS.gene038090:CDS |
TCAGTGGTATTTATGCAGAA+TGG | 0.515557 | 5.1:-71804578 | MS.gene038090:CDS |
TGCGTGTCCTAGAAAGATAC+GGG | 0.517425 | 5.1:-71802913 | MS.gene038090:CDS |
TCCTATAGTTATGACGCAGT+TGG | 0.517976 | 5.1:-71803076 | MS.gene038090:CDS |
TCATAGGCGGTGGCATGGCT+GGG | 0.518133 | 5.1:-71806419 | MS.gene038090:CDS |
ACTGAACCCTCTTCCAACTC+TGG | 0.519154 | 5.1:+71802872 | None:intergenic |
ACCATAAGACCATGACCACC+AGG | 0.519331 | 5.1:+71804043 | None:intergenic |
TGGTCTGTATGAGAGGTTGC+GGG | 0.523316 | 5.1:-71803044 | MS.gene038090:CDS |
CAGCCGAATGTCAAGACCCT+TGG | 0.525666 | 5.1:+71803988 | None:intergenic |
ATGCGTGTCCTAGAAAGATA+CGG | 0.527553 | 5.1:-71802914 | MS.gene038090:CDS |
ACTCCCAGGAACTCCACATT+GGG | 0.528892 | 5.1:+71803643 | None:intergenic |
TCTGTTATTGTCATAGGCGG+TGG | 0.531300 | 5.1:-71806429 | MS.gene038090:CDS |
ATGGTCTGTATGAGAGGTTG+CGG | 0.532017 | 5.1:-71803045 | MS.gene038090:CDS |
ATTCGTTGATGCAGGTTGGA+GGG | 0.533554 | 5.1:-71804619 | MS.gene038090:intron |
CAAATACGAGATATCAGAAG+TGG | 0.533727 | 5.1:+71802845 | None:intergenic |
CCTTCCCGATGCTTCTTCAC+CGG | 0.535712 | 5.1:-71803458 | MS.gene038090:intron |
GAATCAAGTTCCACAAGAGT+TGG | 0.536968 | 5.1:-71804954 | MS.gene038090:CDS |
CTATGCGCTCTTTGATATGG+AGG | 0.537548 | 5.1:-71804978 | MS.gene038090:CDS |
TGAAGGTGACTACTGAAAAT+GGG | 0.540274 | 5.1:-71803834 | MS.gene038090:CDS |
AAGGGTCTTGACATTCGGCT+GGG | 0.542089 | 5.1:-71803986 | MS.gene038090:CDS |
ATAACAGACGGTGACCTTCG+AGG | 0.542275 | 5.1:+71806444 | None:intergenic |
AATTCGTTGATGCAGGTTGG+AGG | 0.542488 | 5.1:-71804620 | MS.gene038090:intron |
ATTTATGCAGAATGGAGGGC+TGG | 0.545277 | 5.1:-71804570 | MS.gene038090:CDS |
AGATATATTCCAGCCAGAGT+TGG | 0.546397 | 5.1:-71802885 | MS.gene038090:CDS |
TTAGAATCCCGGGATAGACT+TGG | 0.547928 | 5.1:-71805439 | MS.gene038090:CDS |
AGGGTCTTGACATTCGGCTG+GGG | 0.550051 | 5.1:-71803985 | MS.gene038090:CDS |
TACTGGAACAATGGCTGCTG+AGG | 0.550086 | 5.1:-71802945 | MS.gene038090:CDS |
TTCAGTATCTCGTGTCTCGG+TGG | 0.557308 | 5.1:-71803123 | MS.gene038090:CDS |
TGCATACTCTACTGGAACAA+TGG | 0.558563 | 5.1:-71802954 | MS.gene038090:CDS |
GAATGTCAAGACCCTTGGCT+AGG | 0.558837 | 5.1:+71803993 | None:intergenic |
GAATCCCGGGATAGACTTGG+TGG | 0.558858 | 5.1:-71805436 | MS.gene038090:CDS |
GTTGGAGGGGCTTTCACACA+AGG | 0.559617 | 5.1:-71804605 | MS.gene038090:CDS |
AGTTACCGGTGAAGAAGCAT+CGG | 0.560061 | 5.1:+71803453 | None:intergenic |
TACTCCCAGGAACTCCACAT+TGG | 0.560675 | 5.1:+71803642 | None:intergenic |
GCAGACAGATAATGTACGAC+AGG | 0.565366 | 5.1:-71804767 | MS.gene038090:intron |
CAGAGTTATCCTCACAAGTA+CGG | 0.566480 | 5.1:+71805191 | None:intergenic |
TCCTCACAAGTACGGTAAAG+AGG | 0.571437 | 5.1:+71805199 | None:intergenic |
AATGTCAAGACCCTTGGCTA+GGG | 0.571742 | 5.1:+71803994 | None:intergenic |
TTTCACACAAGGTGCTTCAG+TGG | 0.575044 | 5.1:-71804594 | MS.gene038090:CDS |
TAGGGGATATAATGGAGTGA+AGG | 0.576412 | 5.1:-71803851 | MS.gene038090:CDS |
TGAAGCATCATGAAGTGCAC+GGG | 0.579978 | 5.1:+71806386 | None:intergenic |
ATTCCAGCCAGAGTTGGAAG+AGG | 0.581520 | 5.1:-71802879 | MS.gene038090:CDS |
AACCGCATGGTCTGTATGAG+AGG | 0.584210 | 5.1:-71803051 | MS.gene038090:CDS |
CTAGGGTATGTATAACAGGC+AGG | 0.584240 | 5.1:+71804011 | None:intergenic |
ATGTCTCAGCAACTACTCCC+AGG | 0.584539 | 5.1:+71803629 | None:intergenic |
ACCTCTTTACCGTACTTGTG+AGG | 0.587430 | 5.1:-71805200 | MS.gene038090:CDS |
GTGGTATTTATGCAGAATGG+AGG | 0.590217 | 5.1:-71804575 | MS.gene038090:CDS |
ATGAAGCATCATGAAGTGCA+CGG | 0.590616 | 5.1:+71806385 | None:intergenic |
TATGCGCTCTTTGATATGGA+GGG | 0.591981 | 5.1:-71804977 | MS.gene038090:CDS |
ATCACTGAAATGTTGGGACC+AGG | 0.592003 | 5.1:-71804524 | MS.gene038090:intron |
GACGCAGTTGGGAAACCGCA+TGG | 0.594696 | 5.1:-71803064 | MS.gene038090:CDS |
ATGTTGATCAGCAGCCTCGA+AGG | 0.595305 | 5.1:-71806458 | MS.gene038090:CDS |
TCTGCCACCAAGTCTATCCC+GGG | 0.596007 | 5.1:+71805432 | None:intergenic |
AGGGCGACAAAGATAGTTAG+GGG | 0.596239 | 5.1:-71803868 | MS.gene038090:CDS |
TGTTATACATACCCTAGCCA+AGG | 0.597299 | 5.1:-71804005 | MS.gene038090:CDS |
ACTAATCCCAATTCCCGCAA+AGG | 0.600311 | 5.1:-71806990 | MS.gene038090:intron |
TATACGATCATGATTTGGAA+AGG | 0.602711 | 5.1:-71805165 | MS.gene038090:intron |
GTTACCGGTGAAGAAGCATC+GGG | 0.603982 | 5.1:+71803454 | None:intergenic |
CTCCCAATCAATGGAGCCAG+AGG | 0.605374 | 5.1:+71805232 | None:intergenic |
TATCATTGCTGTACCTCTTG+GGG | 0.605759 | 5.1:-71803788 | MS.gene038090:CDS |
GGTACAGATATTAATTCACT+AGG | 0.607199 | 5.1:-71803100 | MS.gene038090:CDS |
CAACGAGTGTATTACATACA+GGG | 0.607621 | 5.1:-71802988 | MS.gene038090:CDS |
TTACAGGAAGAATTGCTCCC+TGG | 0.609122 | 5.1:-71804061 | MS.gene038090:intron |
AGATTCAGTATCTCGTGTCT+CGG | 0.611152 | 5.1:-71803126 | MS.gene038090:CDS |
TGATTATGATTCAGGTTGCA+TGG | 0.611159 | 5.1:-71805271 | MS.gene038090:intron |
TTCCAGCCAGAGTTGGAAGA+GGG | 0.614724 | 5.1:-71802878 | MS.gene038090:CDS |
AGTTTGCAATGAGAATCCTC+TGG | 0.615479 | 5.1:-71805248 | MS.gene038090:CDS |
TGGTATTTATGCAGAATGGA+GGG | 0.621034 | 5.1:-71804574 | MS.gene038090:CDS |
TATTGTCATAGGCGGTGGCA+TGG | 0.626229 | 5.1:-71806424 | MS.gene038090:CDS |
TCCAACCCCGATATCAGCAA+TGG | 0.632597 | 5.1:+71803708 | None:intergenic |
GGTCATGGTCTTATGGTCAG+GGG | 0.639940 | 5.1:-71804037 | MS.gene038090:CDS |
AGCTGCCATTGCTGATATCG+GGG | 0.641150 | 5.1:-71803713 | MS.gene038090:CDS |
CCGTCTGTTATTGTCATAGG+CGG | 0.645271 | 5.1:-71806432 | MS.gene038090:CDS |
ACTTCTGTAACCAACTCTTG+TGG | 0.651673 | 5.1:+71804944 | None:intergenic |
CCGGTGAAGAAGCATCGGGA+AGG | 0.655055 | 5.1:+71803458 | None:intergenic |
ATCTTTACCATGATGCACCT+AGG | 0.655995 | 5.1:+71805374 | None:intergenic |
CAGTATCTCGTGTCTCGGTG+GGG | 0.656943 | 5.1:-71803121 | MS.gene038090:CDS |
TTGAAAGAAAGCCAGAACTG+AGG | 0.657435 | 5.1:-71804699 | MS.gene038090:intron |
ATGCGCTCTTTGATATGGAG+GGG | 0.658060 | 5.1:-71804976 | MS.gene038090:CDS |
TTTGCTTTCAGTACCCCAAG+AGG | 0.665152 | 5.1:+71803775 | None:intergenic |
CTTTCTTAATCTTCACAAAG+CGG | 0.672988 | 5.1:-71803590 | MS.gene038090:CDS |
CAGGAAGAATTGCTCCCTGG+TGG | 0.673379 | 5.1:-71804058 | MS.gene038090:CDS |
GTTATACATACCCTAGCCAA+GGG | 0.684397 | 5.1:-71804004 | MS.gene038090:CDS |
AGATAACTTATTCTTTGCAG+GGG | 0.691736 | 5.1:-71803014 | MS.gene038090:CDS |
CCATAAGACCATGACCACCA+GGG | 0.693042 | 5.1:+71804044 | None:intergenic |
CCGCCTATGACAATAACAGA+CGG | 0.695318 | 5.1:+71806432 | None:intergenic |
TTGTTTACATGCCTGCTGGG+CGG | 0.710778 | 5.1:-71803552 | MS.gene038090:CDS |
AACCTCTCATACAGACCATG+CGG | 0.717356 | 5.1:+71803049 | None:intergenic |
GCGTGTCCTAGAAAGATACG+GGG | 0.777230 | 5.1:-71802912 | MS.gene038090:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGAAATTTAATCAATT+AGG | + | chr5.1:71803088-71803107 | None:intergenic | 10.0% |
!! | ATATTATAATATTTGATGTA+AGG | - | chr5.1:71805641-71805660 | MS.gene038090:intron | 10.0% |
!! | TATTATAATATTTGATGTAA+GGG | - | chr5.1:71805642-71805661 | MS.gene038090:intron | 10.0% |
!!! | TTTTATATATTGGTAAAAAA+CGG | - | chr5.1:71803125-71803144 | MS.gene038090:CDS | 10.0% |
!! | AAAAAAAGTGATAAATCATT+TGG | - | chr5.1:71803169-71803188 | MS.gene038090:intron | 15.0% |
!! | AAAAAAGTGATAAATCATTT+GGG | - | chr5.1:71803170-71803189 | MS.gene038090:intron | 15.0% |
!! | AATGGTATATTATTTGATAT+GGG | - | chr5.1:71804818-71804837 | MS.gene038090:intron | 15.0% |
!! | AGGAAAAACAAAATAATTAA+AGG | + | chr5.1:71804292-71804311 | None:intergenic | 15.0% |
!! | TTTATATATTGGTAAAAAAC+GGG | - | chr5.1:71803126-71803145 | MS.gene038090:CDS | 15.0% |
!!! | AATTTCTAATTTTTATGATC+AGG | - | chr5.1:71803097-71803116 | MS.gene038090:CDS | 15.0% |
!!! | ATGCATTTTTTGTTATTATT+TGG | - | chr5.1:71804713-71804732 | MS.gene038090:CDS | 15.0% |
!!! | ATTTAACTTGTTTTTTACAA+TGG | - | chr5.1:71806439-71806458 | MS.gene038090:CDS | 15.0% |
!!! | ATTTCTAATTTTTATGATCA+GGG | - | chr5.1:71803098-71803117 | MS.gene038090:CDS | 15.0% |
!!! | TTACATAAATATTTTTTACG+CGG | - | chr5.1:71805439-71805458 | MS.gene038090:CDS | 15.0% |
!!! | TTTAAAACTATTATAGTTAC+CGG | + | chr5.1:71806416-71806435 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTGTTCTGAATT+TGG | - | chr5.1:71802942-71802961 | MS.gene038090:CDS | 15.0% |
!! | AACAAAATAATTAAAGGAGA+TGG | + | chr5.1:71804286-71804305 | None:intergenic | 20.0% |
!! | AATAATTCAAAGAGTTGTAT+TGG | - | chr5.1:71803224-71803243 | MS.gene038090:intron | 20.0% |
!! | AATATCCTGATCATAAAAAT+TGG | + | chr5.1:71803054-71803073 | None:intergenic | 20.0% |
!! | AATTGGAAATTTGATCAATT+AGG | + | chr5.1:71803037-71803056 | None:intergenic | 20.0% |
!! | AGATCTAAAGATTAATGTAT+TGG | - | chr5.1:71803675-71803694 | MS.gene038090:CDS | 20.0% |
!! | ATTTGATTAGATTATAGATC+TGG | - | chr5.1:71802974-71802993 | MS.gene038090:CDS | 20.0% |
!! | CCAAAATAAAAAATGAAAAG+AGG | + | chr5.1:71802904-71802923 | None:intergenic | 20.0% |
!! | GAATGGTATATTATTTGATA+TGG | - | chr5.1:71804817-71804836 | MS.gene038090:intron | 20.0% |
!! | TCTAATAAAAAAGATCAACA+AGG | + | chr5.1:71805509-71805528 | None:intergenic | 20.0% |
!! | TTTATTAGACACATTATTGA+AGG | - | chr5.1:71805520-71805539 | MS.gene038090:intron | 20.0% |
!!! | AATTTCCAATTTTTATGATC+AGG | - | chr5.1:71803046-71803065 | MS.gene038090:CDS | 20.0% |
!!! | AGTTCTTATTTATACACTAT+TGG | - | chr5.1:71805562-71805581 | MS.gene038090:intron | 20.0% |
!!! | ATTTGTTTGAAGTTTTGTTT+TGG | - | chr5.1:71805901-71805920 | MS.gene038090:intron | 20.0% |
!!! | CCTCTTTTCATTTTTTATTT+TGG | - | chr5.1:71802901-71802920 | MS.gene038090:CDS | 20.0% |
!!! | TCAGGGTATTTTTTATATAT+TGG | - | chr5.1:71803115-71803134 | MS.gene038090:CDS | 20.0% |
!!! | TTGAGTTTTGATAAAATGAA+TGG | + | chr5.1:71805213-71805232 | None:intergenic | 20.0% |
!!! | TTTTATTTTAGCATTGAAAG+TGG | - | chr5.1:71804557-71804576 | MS.gene038090:CDS | 20.0% |
! | AATGTTTAAATGAGAAGAAG+AGG | + | chr5.1:71804312-71804331 | None:intergenic | 25.0% |
! | ACAACTCTCAATACAAATAA+AGG | + | chr5.1:71804357-71804376 | None:intergenic | 25.0% |
! | AGTTAAAAAATGAACCTTTG+CGG | + | chr5.1:71802879-71802898 | None:intergenic | 25.0% |
! | ATAATATCCTCAATAAAAGC+CGG | + | chr5.1:71805628-71805647 | None:intergenic | 25.0% |
! | ATTCTATATCACTGAAATGT+TGG | - | chr5.1:71805321-71805340 | MS.gene038090:intron | 25.0% |
! | CTAATTGCAATCTATTTCAT+TGG | - | chr5.1:71804004-71804023 | MS.gene038090:CDS | 25.0% |
! | TAAACTTAAGTTACATGTAC+AGG | + | chr5.1:71803981-71804000 | None:intergenic | 25.0% |
! | TACAATGGAATAAAAGTAAG+AGG | - | chr5.1:71806454-71806473 | MS.gene038090:CDS | 25.0% |
! | TTCTATATCACTGAAATGTT+GGG | - | chr5.1:71805322-71805341 | MS.gene038090:intron | 25.0% |
! | TTGGATCGAAATATAGTTTA+TGG | - | chr5.1:71803694-71803713 | MS.gene038090:CDS | 25.0% |
!! | AAAACCATTTTATGCTATCT+TGG | - | chr5.1:71804106-71804125 | MS.gene038090:intron | 25.0% |
!! | AAACCATTTTATGCTATCTT+GGG | - | chr5.1:71804107-71804126 | MS.gene038090:intron | 25.0% |
!! | GCTTTGTTAGAGTTTAAAAT+TGG | - | chr5.1:71804150-71804169 | MS.gene038090:intron | 25.0% |
!!! | AGTTCATTACTTTTTTGTTC+AGG | - | chr5.1:71804382-71804401 | MS.gene038090:intron | 25.0% |
!!! | AGTTTTGATAAAATGAATGG+TGG | + | chr5.1:71805210-71805229 | None:intergenic | 25.0% |
!!! | ATTTGAAATGATTTTGCAAG+AGG | - | chr5.1:71804940-71804959 | MS.gene038090:CDS | 25.0% |
!!! | CATTTTAGAAGATAAAGTGT+GGG | - | chr5.1:71806523-71806542 | MS.gene038090:intron | 25.0% |
!!! | GTGTTTTTTTTGACATGTTT+TGG | - | chr5.1:71803291-71803310 | MS.gene038090:intron | 25.0% |
!!! | TAGATTATAGATCTGGTTTT+AGG | - | chr5.1:71802981-71803000 | MS.gene038090:CDS | 25.0% |
!!! | TTGTTGTATTTTGGTTCAAT+AGG | - | chr5.1:71804056-71804075 | MS.gene038090:CDS | 25.0% |
!!! | TTTGATGATACCTATTTTCA+GGG | - | chr5.1:71805965-71805984 | MS.gene038090:intron | 25.0% |
AAGACCTAGATAAACTATGA+GGG | - | chr5.1:71803639-71803658 | MS.gene038090:CDS | 30.0% | |
AAGATAGTTAGGGGATATAA+TGG | - | chr5.1:71805993-71806012 | MS.gene038090:intron | 30.0% | |
ATTGGTAAAAAACGGGAATA+GGG | - | chr5.1:71803133-71803152 | MS.gene038090:intron | 30.0% | |
CTTTCTTAATCTTCACAAAG+CGG | - | chr5.1:71806262-71806281 | MS.gene038090:intron | 30.0% | |
GGTACAGATATTAATTCACT+AGG | - | chr5.1:71806752-71806771 | MS.gene038090:intron | 30.0% | |
GTTAAAAAATGAACCTTTGC+GGG | + | chr5.1:71802878-71802897 | None:intergenic | 30.0% | |
TAACCCAAGATAGCATAAAA+TGG | + | chr5.1:71804113-71804132 | None:intergenic | 30.0% | |
TATTGGTAAAAAACGGGAAT+AGG | - | chr5.1:71803132-71803151 | MS.gene038090:intron | 30.0% | |
TGAAGGACACAATTATTAAG+TGG | - | chr5.1:71805537-71805556 | MS.gene038090:intron | 30.0% | |
TGTGAGTATATGAAACCATA+CGG | + | chr5.1:71805695-71805714 | None:intergenic | 30.0% | |
TTTCCAAATCATGATCGTAT+AGG | + | chr5.1:71804688-71804707 | None:intergenic | 30.0% | |
! | AGACATTTTCTCAATGTCTT+TGG | + | chr5.1:71806330-71806349 | None:intergenic | 30.0% |
! | ATTCACACTGATTACTCATT+TGG | - | chr5.1:71804443-71804462 | MS.gene038090:intron | 30.0% |
! | TAATGATATGCCATTTGTAC+CGG | - | chr5.1:71805606-71805625 | MS.gene038090:intron | 30.0% |
! | TACACTTCAACAACGTATTT+TGG | - | chr5.1:71806186-71806205 | MS.gene038090:intron | 30.0% |
! | TATACGATCATGATTTGGAA+AGG | - | chr5.1:71804687-71804706 | MS.gene038090:intron | 30.0% |
! | TGATTGCGATTGTTGTATTT+TGG | - | chr5.1:71804047-71804066 | MS.gene038090:CDS | 30.0% |
!! | CTTTGATGATACCTATTTTC+AGG | - | chr5.1:71805964-71805983 | MS.gene038090:intron | 30.0% |
!! | GCATTTTAGAAGATAAAGTG+TGG | - | chr5.1:71806522-71806541 | MS.gene038090:intron | 30.0% |
!!! | ACACTATTGGTTTGAGTTTT+AGG | - | chr5.1:71805575-71805594 | MS.gene038090:intron | 30.0% |
!!! | CATAAATATTTTTTACGCGG+TGG | - | chr5.1:71805442-71805461 | MS.gene038090:CDS | 30.0% |
AAACCGTGTTCAAGATGTTT+GGG | - | chr5.1:71805361-71805380 | MS.gene038090:intron | 35.0% | |
AAACTCAAATTCGTTGATGC+AGG | - | chr5.1:71805225-71805244 | MS.gene038090:CDS | 35.0% | |
AAAGTGGCTGATTATGATTC+AGG | - | chr5.1:71804573-71804592 | MS.gene038090:CDS | 35.0% | |
ACAAGGACAAAGAACTGAAA+TGG | + | chr5.1:71805492-71805511 | None:intergenic | 35.0% | |
ACTTCATGATGCTTCATTTC+AGG | - | chr5.1:71803473-71803492 | MS.gene038090:CDS | 35.0% | |
ATATGTCACCATGTGGAAAT+GGG | + | chr5.1:71804229-71804248 | None:intergenic | 35.0% | |
ATCATCAAAGCCAGTTAGTT+TGG | + | chr5.1:71805954-71805973 | None:intergenic | 35.0% | |
ATTCTGTAGCCTACAAAACA+TGG | + | chr5.1:71806636-71806655 | None:intergenic | 35.0% | |
CAAATACGAGATATCAGAAG+TGG | + | chr5.1:71807010-71807029 | None:intergenic | 35.0% | |
CAACGAGTGTATTACATACA+GGG | - | chr5.1:71806864-71806883 | MS.gene038090:intron | 35.0% | |
GAAGACCTAGATAAACTATG+AGG | - | chr5.1:71803638-71803657 | MS.gene038090:CDS | 35.0% | |
GAGATACTGAATCTGCATAA+AGG | + | chr5.1:71806720-71806739 | None:intergenic | 35.0% | |
GATTAATAAGTGACTCCGTA+TGG | - | chr5.1:71805677-71805696 | MS.gene038090:intron | 35.0% | |
GCTATGCACAGAAACATAAA+TGG | + | chr5.1:71806673-71806692 | None:intergenic | 35.0% | |
GTAACCAGGTATATAGAGAA+GGG | + | chr5.1:71805775-71805794 | None:intergenic | 35.0% | |
GTTTCCCTCATAGTTTATCT+AGG | + | chr5.1:71803646-71803665 | None:intergenic | 35.0% | |
GTTTGGTAAACCAACAAAAC+AGG | + | chr5.1:71805937-71805956 | None:intergenic | 35.0% | |
TAAAAGTAAGAGGTTCAGAG+TGG | - | chr5.1:71806464-71806483 | MS.gene038090:CDS | 35.0% | |
TCAAACCAAACCATACCTTT+GGG | - | chr5.1:71804196-71804215 | MS.gene038090:intron | 35.0% | |
TCAATAAAAGCCGGTACAAA+TGG | + | chr5.1:71805619-71805638 | None:intergenic | 35.0% | |
TCAGTGGTATTTATGCAGAA+TGG | - | chr5.1:71805274-71805293 | MS.gene038090:intron | 35.0% | |
TCGACACTGGTAATAATTTG+AGG | - | chr5.1:71803572-71803591 | MS.gene038090:CDS | 35.0% | |
TGAAGGTGACTACTGAAAAT+GGG | - | chr5.1:71806018-71806037 | MS.gene038090:intron | 35.0% | |
TGGTATTTATGCAGAATGGA+GGG | - | chr5.1:71805278-71805297 | MS.gene038090:intron | 35.0% | |
TGTAACCAGGTATATAGAGA+AGG | + | chr5.1:71805776-71805795 | None:intergenic | 35.0% | |
TGTCCTATACGATCATGATT+TGG | - | chr5.1:71804682-71804701 | MS.gene038090:intron | 35.0% | |
TGTTGTTGTACTGTCTATGT+AGG | - | chr5.1:71803357-71803376 | MS.gene038090:intron | 35.0% | |
TTCTCTATATACCTGGTTAC+AGG | - | chr5.1:71805775-71805794 | MS.gene038090:intron | 35.0% | |
TTGGGTTATACAACTTCACT+TGG | - | chr5.1:71804125-71804144 | MS.gene038090:intron | 35.0% | |
! | AAGTCTTTGTCCTGTTTTGT+TGG | - | chr5.1:71805924-71805943 | MS.gene038090:intron | 35.0% |
! | AATTGAAAGTGCACGAAGAA+TGG | + | chr5.1:71805129-71805148 | None:intergenic | 35.0% |
! | ATGTGTACTGTCTAGTTTAG+AGG | - | chr5.1:71806594-71806613 | MS.gene038090:intron | 35.0% |
! | TCTCTTGAACCATGTTTTGT+AGG | - | chr5.1:71806624-71806643 | MS.gene038090:intron | 35.0% |
! | TGTTTCTGTGCATAGCTATA+TGG | - | chr5.1:71806677-71806696 | MS.gene038090:intron | 35.0% |
!! | TGATTATGATTCAGGTTGCA+TGG | - | chr5.1:71804581-71804600 | MS.gene038090:CDS | 35.0% |
!! | TGTTGGTTTACCAAACTAAC+TGG | - | chr5.1:71805941-71805960 | MS.gene038090:intron | 35.0% |
!! | TTGGTTCCTCTAAAGTGATA+GGG | - | chr5.1:71806489-71806508 | MS.gene038090:intron | 35.0% |
!! | TTTGGTTCCTCTAAAGTGAT+AGG | - | chr5.1:71806488-71806507 | MS.gene038090:intron | 35.0% |
!!! | ATTTGTACCGGCTTTTATTG+AGG | - | chr5.1:71805618-71805637 | MS.gene038090:intron | 35.0% |
AAATGAACCTTTGCGGGAAT+TGG | + | chr5.1:71802872-71802891 | None:intergenic | 40.0% | |
AAATGTTGGGACCAGGTAAT+TGG | - | chr5.1:71805335-71805354 | MS.gene038090:intron | 40.0% | |
AACCCCAAACATCTTGAACA+CGG | + | chr5.1:71805367-71805386 | None:intergenic | 40.0% | |
AACCGTGTTCAAGATGTTTG+GGG | - | chr5.1:71805362-71805381 | MS.gene038090:intron | 40.0% | |
AATGAACCTTTGCGGGAATT+GGG | + | chr5.1:71802871-71802890 | None:intergenic | 40.0% | |
ACACTGACACTTCAGATTGA+AGG | + | chr5.1:71803802-71803821 | None:intergenic | 40.0% | |
ACTTCTGTAACCAACTCTTG+TGG | + | chr5.1:71804911-71804930 | None:intergenic | 40.0% | |
AGATATATTCCAGCCAGAGT+TGG | - | chr5.1:71806967-71806986 | MS.gene038090:intron | 40.0% | |
AGATTCAGTATCTCGTGTCT+CGG | - | chr5.1:71806726-71806745 | MS.gene038090:intron | 40.0% | |
AGTTTGCAATGAGAATCCTC+TGG | - | chr5.1:71804604-71804623 | MS.gene038090:CDS | 40.0% | |
ATACCATTCAAGATGACCAG+AGG | + | chr5.1:71804806-71804825 | None:intergenic | 40.0% | |
ATCTTTACCATGATGCACCT+AGG | + | chr5.1:71804481-71804500 | None:intergenic | 40.0% | |
ATCTTTGTCGCCCTGAAAAT+AGG | + | chr5.1:71805978-71805997 | None:intergenic | 40.0% | |
ATGCGTGTCCTAGAAAGATA+CGG | - | chr5.1:71806938-71806957 | MS.gene038090:intron | 40.0% | |
ATGGATAGTCGTATCACTAG+AGG | - | chr5.1:71803610-71803629 | MS.gene038090:CDS | 40.0% | |
CAGAGTTATCCTCACAAGTA+CGG | + | chr5.1:71804664-71804683 | None:intergenic | 40.0% | |
CATATGTCACCATGTGGAAA+TGG | + | chr5.1:71804230-71804249 | None:intergenic | 40.0% | |
CCTATAGTTATGACGCAGTT+GGG | - | chr5.1:71806777-71806796 | MS.gene038090:intron | 40.0% | |
CGTGTGAGTATCATTACTCT+TGG | + | chr5.1:71803552-71803571 | None:intergenic | 40.0% | |
CTAAAGTGATAGGGTCTGAA+GGG | - | chr5.1:71806498-71806517 | MS.gene038090:intron | 40.0% | |
CTATCATTGCTGTACCTCTT+GGG | - | chr5.1:71806063-71806082 | MS.gene038090:intron | 40.0% | |
CTTCAGATTGAAGGTTTGTC+TGG | + | chr5.1:71803793-71803812 | None:intergenic | 40.0% | |
GAAACCGTGTTCAAGATGTT+TGG | - | chr5.1:71805360-71805379 | MS.gene038090:intron | 40.0% | |
GAAATGGGAATTTGTCCCAA+AGG | + | chr5.1:71804214-71804233 | None:intergenic | 40.0% | |
GAATCAAGTTCCACAAGAGT+TGG | - | chr5.1:71804898-71804917 | MS.gene038090:intron | 40.0% | |
GAATGCTTCAATCTTTCCTC+TGG | - | chr5.1:71804787-71804806 | MS.gene038090:intron | 40.0% | |
GACAAATTCCCATTTCCACA+TGG | - | chr5.1:71804218-71804237 | MS.gene038090:intron | 40.0% | |
GAGGAGAGTAGATAAGATGA+TGG | - | chr5.1:71803591-71803610 | MS.gene038090:CDS | 40.0% | |
GCAACGAGTGTATTACATAC+AGG | - | chr5.1:71806863-71806882 | MS.gene038090:intron | 40.0% | |
GCTAATAATGACCTCAGTTC+TGG | + | chr5.1:71805167-71805186 | None:intergenic | 40.0% | |
GTAGTTGCTGAGACATCTTA+TGG | - | chr5.1:71806230-71806249 | MS.gene038090:intron | 40.0% | |
GTCAAACCAAACCATACCTT+TGG | - | chr5.1:71804195-71804214 | MS.gene038090:intron | 40.0% | |
GTGAAGGTGACTACTGAAAA+TGG | - | chr5.1:71806017-71806036 | MS.gene038090:intron | 40.0% | |
GTGGTATTTATGCAGAATGG+AGG | - | chr5.1:71805277-71805296 | MS.gene038090:intron | 40.0% | |
GTTATACATACCCTAGCCAA+GGG | - | chr5.1:71805848-71805867 | MS.gene038090:intron | 40.0% | |
TATCATTGCTGTACCTCTTG+GGG | - | chr5.1:71806064-71806083 | MS.gene038090:intron | 40.0% | |
TATGCGCTCTTTGATATGGA+GGG | - | chr5.1:71804875-71804894 | MS.gene038090:intron | 40.0% | |
TCAAATTCGTTGATGCAGGT+TGG | - | chr5.1:71805229-71805248 | MS.gene038090:CDS | 40.0% | |
TCACCGTCTGTTATTGTCAT+AGG | - | chr5.1:71803417-71803436 | MS.gene038090:intron | 40.0% | |
TCCTATAGTTATGACGCAGT+TGG | - | chr5.1:71806776-71806795 | MS.gene038090:intron | 40.0% | |
TCTTTCCAATCTGGAAGCTT+TGG | + | chr5.1:71806119-71806138 | None:intergenic | 40.0% | |
TGCATACTCTACTGGAACAA+TGG | - | chr5.1:71806898-71806917 | MS.gene038090:intron | 40.0% | |
TGTGTTCATATGTCACCATG+TGG | + | chr5.1:71804236-71804255 | None:intergenic | 40.0% | |
TGTTATACATACCCTAGCCA+AGG | - | chr5.1:71805847-71805866 | MS.gene038090:intron | 40.0% | |
TTACATACAGGGTCTGTTCA+TGG | - | chr5.1:71806875-71806894 | MS.gene038090:intron | 40.0% | |
TTCAGACCCTATCACTTTAG+AGG | + | chr5.1:71806498-71806517 | None:intergenic | 40.0% | |
TTGAAAGAAAGCCAGAACTG+AGG | - | chr5.1:71805153-71805172 | MS.gene038090:intron | 40.0% | |
TTGGCTAGGGTATGTATAAC+AGG | + | chr5.1:71805848-71805867 | None:intergenic | 40.0% | |
TTTCCTCTGGTCATCTTGAA+TGG | - | chr5.1:71804800-71804819 | MS.gene038090:intron | 40.0% | |
! | ACAATGTGTGTCTTCGAGTT+TGG | - | chr5.1:71803849-71803868 | MS.gene038090:CDS | 40.0% |
! | ACACACATTGTGTATTGACG+TGG | + | chr5.1:71803840-71803859 | None:intergenic | 40.0% |
! | ATGAAGCATCATGAAGTGCA+CGG | + | chr5.1:71803470-71803489 | None:intergenic | 40.0% |
! | CAAGAGTTGGTTACAGAAGT+TGG | - | chr5.1:71804911-71804930 | MS.gene038090:intron | 40.0% |
! | TAAGAGGTTCAGAGTGGATT+TGG | - | chr5.1:71806470-71806489 | MS.gene038090:CDS | 40.0% |
! | TAGGGGATATAATGGAGTGA+AGG | - | chr5.1:71806001-71806020 | MS.gene038090:intron | 40.0% |
! | TCTAAAGTGATAGGGTCTGA+AGG | - | chr5.1:71806497-71806516 | MS.gene038090:intron | 40.0% |
! | TGTGTGTCTGTTATTTGCTG+TGG | - | chr5.1:71803902-71803921 | MS.gene038090:intron | 40.0% |
! | TTCTTGTTTACATGCCTGCT+GGG | - | chr5.1:71806297-71806316 | MS.gene038090:intron | 40.0% |
! | TTTGTCCCAAAGGTATGGTT+TGG | + | chr5.1:71804204-71804223 | None:intergenic | 40.0% |
!! | GTGTGTCTGTTATTTGCTGT+GGG | - | chr5.1:71803903-71803922 | MS.gene038090:intron | 40.0% |
!!! | AGATCTGGTTTTAGGATCGT+GGG | - | chr5.1:71802989-71803008 | MS.gene038090:CDS | 40.0% |
!!! | AGGTCGTTCTTTTAGAATCC+CGG | - | chr5.1:71804402-71804421 | MS.gene038090:intron | 40.0% |
!!! | TAGATCTGGTTTTAGGATCG+TGG | - | chr5.1:71802988-71803007 | MS.gene038090:CDS | 40.0% |
!!! | TTTGGTTTTCCTGTTGACCT+AGG | - | chr5.1:71804461-71804480 | MS.gene038090:intron | 40.0% |
AACCTCTCATACAGACCATG+CGG | + | chr5.1:71806806-71806825 | None:intergenic | 45.0% | |
AAGCTGCCATTGCTGATATC+GGG | - | chr5.1:71806138-71806157 | MS.gene038090:intron | 45.0% | |
AAGGTTTGTCTGGCATACGA+GGG | + | chr5.1:71803783-71803802 | None:intergenic | 45.0% | |
AATGTCAAGACCCTTGGCTA+GGG | + | chr5.1:71805861-71805880 | None:intergenic | 45.0% | |
ACCTCTTTACCGTACTTGTG+AGG | - | chr5.1:71804652-71804671 | MS.gene038090:intron | 45.0% | |
ACTAATCCCAATTCCCGCAA+AGG | - | chr5.1:71802862-71802881 | MS.gene038090:CDS | 45.0% | |
AGGGCGACAAAGATAGTTAG+GGG | - | chr5.1:71805984-71806003 | MS.gene038090:intron | 45.0% | |
AGTCGTATCACTAGAGGTAG+AGG | - | chr5.1:71803616-71803635 | MS.gene038090:CDS | 45.0% | |
ATCACTGAAATGTTGGGACC+AGG | - | chr5.1:71805328-71805347 | MS.gene038090:intron | 45.0% | |
ATGCGCTCTTTGATATGGAG+GGG | - | chr5.1:71804876-71804895 | MS.gene038090:intron | 45.0% | |
ATGGCAGCTTCTTTCCAATC+TGG | + | chr5.1:71806128-71806147 | None:intergenic | 45.0% | |
ATGGTCTGTATGAGAGGTTG+CGG | - | chr5.1:71806807-71806826 | MS.gene038090:intron | 45.0% | |
ATTTATGCAGAATGGAGGGC+TGG | - | chr5.1:71805282-71805301 | MS.gene038090:intron | 45.0% | |
CACGGTTTCTTCCAATTACC+TGG | + | chr5.1:71805349-71805368 | None:intergenic | 45.0% | |
CAGCTATGCGCTCTTTGATA+TGG | - | chr5.1:71804871-71804890 | MS.gene038090:intron | 45.0% | |
CAGGGCGACAAAGATAGTTA+GGG | - | chr5.1:71805983-71806002 | MS.gene038090:intron | 45.0% | |
CCACTTAGTGGGATAAGACT+GGG | - | chr5.1:71803741-71803760 | MS.gene038090:CDS | 45.0% | |
CCCAACTGCGTCATAACTAT+AGG | + | chr5.1:71806780-71806799 | None:intergenic | 45.0% | |
CCGCCTATGACAATAACAGA+CGG | + | chr5.1:71803423-71803442 | None:intergenic | 45.0% | |
CCGTCTGTTATTGTCATAGG+CGG | - | chr5.1:71803420-71803439 | MS.gene038090:intron | 45.0% | |
CGGGAATAGGGTTTGAAAAG+TGG | - | chr5.1:71803145-71803164 | MS.gene038090:intron | 45.0% | |
CTAGGGTATGTATAACAGGC+AGG | + | chr5.1:71805844-71805863 | None:intergenic | 45.0% | |
CTAGTTCCCCGTATCTTTCT+AGG | + | chr5.1:71806949-71806968 | None:intergenic | 45.0% | |
CTATGCGCTCTTTGATATGG+AGG | - | chr5.1:71804874-71804893 | MS.gene038090:intron | 45.0% | |
CTCACCCTTCTCTATATACC+TGG | - | chr5.1:71805768-71805787 | MS.gene038090:intron | 45.0% | |
CTTAATCTTCACAAAGCGGC+AGG | - | chr5.1:71806266-71806285 | MS.gene038090:intron | 45.0% | |
CTTATCCCACTAAGTGGGAT+CGG | + | chr5.1:71803738-71803757 | None:intergenic | 45.0% | |
GAAGCTGCCATTGCTGATAT+CGG | - | chr5.1:71806137-71806156 | MS.gene038090:intron | 45.0% | |
GAGCAATTCTTCCTGTAACC+AGG | + | chr5.1:71805789-71805808 | None:intergenic | 45.0% | |
GCAGACAGATAATGTACGAC+AGG | - | chr5.1:71805085-71805104 | MS.gene038090:intron | 45.0% | |
GCAGGCATGTAAACAAGAAC+AGG | + | chr5.1:71806296-71806315 | None:intergenic | 45.0% | |
GCTATCATTGCTGTACCTCT+TGG | - | chr5.1:71806062-71806081 | MS.gene038090:intron | 45.0% | |
GGGAATTTGTCCCAAAGGTA+TGG | + | chr5.1:71804209-71804228 | None:intergenic | 45.0% | |
GTTCATGGTGCATACTCTAC+TGG | - | chr5.1:71806890-71806909 | MS.gene038090:intron | 45.0% | |
TAGCCAAGGGTCTTGACATT+CGG | - | chr5.1:71805861-71805880 | MS.gene038090:intron | 45.0% | |
TCAGGGCGACAAAGATAGTT+AGG | - | chr5.1:71805982-71806001 | MS.gene038090:intron | 45.0% | |
TCCTCACAAGTACGGTAAAG+AGG | + | chr5.1:71804656-71804675 | None:intergenic | 45.0% | |
TCTGTTATTGTCATAGGCGG+TGG | - | chr5.1:71803423-71803442 | MS.gene038090:intron | 45.0% | |
TGCGTGTCCTAGAAAGATAC+GGG | - | chr5.1:71806939-71806958 | MS.gene038090:intron | 45.0% | |
TTACAGGAAGAATTGCTCCC+TGG | - | chr5.1:71805791-71805810 | MS.gene038090:intron | 45.0% | |
TTAGAATCCCGGGATAGACT+TGG | - | chr5.1:71804413-71804432 | MS.gene038090:intron | 45.0% | |
TTGAGCCAAAGCTTCCAGAT+TGG | - | chr5.1:71806111-71806130 | MS.gene038090:intron | 45.0% | |
TTTGCTTTCAGTACCCCAAG+AGG | + | chr5.1:71806080-71806099 | None:intergenic | 45.0% | |
! | AATCCTCTGGCTCCATTGAT+TGG | - | chr5.1:71804617-71804636 | MS.gene038090:intron | 45.0% |
! | AATTCGTTGATGCAGGTTGG+AGG | - | chr5.1:71805232-71805251 | MS.gene038090:CDS | 45.0% |
! | AGTTACCGGTGAAGAAGCAT+CGG | + | chr5.1:71806402-71806421 | None:intergenic | 45.0% |
! | ATCCTCTGGCTCCATTGATT+GGG | - | chr5.1:71804618-71804637 | MS.gene038090:intron | 45.0% |
! | ATTCGTTGATGCAGGTTGGA+GGG | - | chr5.1:71805233-71805252 | MS.gene038090:CDS | 45.0% |
! | CCAGTCTTATCCCACTAAGT+GGG | + | chr5.1:71803743-71803762 | None:intergenic | 45.0% |
! | GTGGACTGAGGATTCATGTA+TGG | - | chr5.1:71805461-71805480 | MS.gene038090:intron | 45.0% |
! | GTTCTTGTTTACATGCCTGC+TGG | - | chr5.1:71806296-71806315 | MS.gene038090:intron | 45.0% |
! | TGAAGCATCATGAAGTGCAC+GGG | + | chr5.1:71803469-71803488 | None:intergenic | 45.0% |
! | TTTCACACAAGGTGCTTCAG+TGG | - | chr5.1:71805258-71805277 | MS.gene038090:CDS | 45.0% |
!! | TGGTCATGGTCTTATGGTCA+GGG | - | chr5.1:71805814-71805833 | MS.gene038090:intron | 45.0% |
!!! | ATTTTTTACGCGGTGGACTG+AGG | - | chr5.1:71805449-71805468 | MS.gene038090:CDS | 45.0% |
!!! | CAACGTATTTTGGCCCAATG+TGG | - | chr5.1:71806196-71806215 | MS.gene038090:intron | 45.0% |
!!! | GGTCGTTCTTTTAGAATCCC+GGG | - | chr5.1:71804403-71804422 | MS.gene038090:intron | 45.0% |
AACCGCATGGTCTGTATGAG+AGG | - | chr5.1:71806801-71806820 | MS.gene038090:intron | 50.0% | |
AAGGGTCTTGACATTCGGCT+GGG | - | chr5.1:71805866-71805885 | MS.gene038090:intron | 50.0% | |
ACCATAAGACCATGACCACC+AGG | + | chr5.1:71805812-71805831 | None:intergenic | 50.0% | |
ACTAAGTGGGATCGGCTACA+TGG | + | chr5.1:71803730-71803749 | None:intergenic | 50.0% | |
ACTCCCAGGAACTCCACATT+GGG | + | chr5.1:71806212-71806231 | None:intergenic | 50.0% | |
ACTGAACCCTCTTCCAACTC+TGG | + | chr5.1:71806983-71807002 | None:intergenic | 50.0% | |
AGCTGCCATTGCTGATATCG+GGG | - | chr5.1:71806139-71806158 | MS.gene038090:intron | 50.0% | |
ATAACAGACGGTGACCTTCG+AGG | + | chr5.1:71803411-71803430 | None:intergenic | 50.0% | |
ATGTAGCCGATCCCACTTAG+TGG | - | chr5.1:71803729-71803748 | MS.gene038090:CDS | 50.0% | |
ATGTCTCAGCAACTACTCCC+AGG | + | chr5.1:71806226-71806245 | None:intergenic | 50.0% | |
ATGTTGATCAGCAGCCTCGA+AGG | - | chr5.1:71803394-71803413 | MS.gene038090:intron | 50.0% | |
ATTCCAGCCAGAGTTGGAAG+AGG | - | chr5.1:71806973-71806992 | MS.gene038090:intron | 50.0% | |
CATGATGCACCTAGGTCAAC+AGG | + | chr5.1:71804473-71804492 | None:intergenic | 50.0% | |
CCATAAGACCATGACCACCA+GGG | + | chr5.1:71805811-71805830 | None:intergenic | 50.0% | |
CCCACTTAGTGGGATAAGAC+TGG | - | chr5.1:71803740-71803759 | MS.gene038090:CDS | 50.0% | |
CTGTTGACCTAGGTGCATCA+TGG | - | chr5.1:71804471-71804490 | MS.gene038090:intron | 50.0% | |
GAAGGTTTGTCTGGCATACG+AGG | + | chr5.1:71803784-71803803 | None:intergenic | 50.0% | |
GAATGTCAAGACCCTTGGCT+AGG | + | chr5.1:71805862-71805881 | None:intergenic | 50.0% | |
GCGTGTCCTAGAAAGATACG+GGG | - | chr5.1:71806940-71806959 | MS.gene038090:intron | 50.0% | |
TACTCCCAGGAACTCCACAT+TGG | + | chr5.1:71806213-71806232 | None:intergenic | 50.0% | |
TACTGGAACAATGGCTGCTG+AGG | - | chr5.1:71806907-71806926 | MS.gene038090:intron | 50.0% | |
TATTGTCATAGGCGGTGGCA+TGG | - | chr5.1:71803428-71803447 | MS.gene038090:intron | 50.0% | |
TCAGTATCTCGTGTCTCGGT+GGG | - | chr5.1:71806730-71806749 | MS.gene038090:intron | 50.0% | |
TCCAACCCCGATATCAGCAA+TGG | + | chr5.1:71806147-71806166 | None:intergenic | 50.0% | |
TGATACTCACACGTCGACAC+TGG | - | chr5.1:71803559-71803578 | MS.gene038090:CDS | 50.0% | |
TGGTCTGTATGAGAGGTTGC+GGG | - | chr5.1:71806808-71806827 | MS.gene038090:intron | 50.0% | |
TGTAGCCGATCCCACTTAGT+GGG | - | chr5.1:71803730-71803749 | MS.gene038090:CDS | 50.0% | |
TTCAGTATCTCGTGTCTCGG+TGG | - | chr5.1:71806729-71806748 | MS.gene038090:intron | 50.0% | |
TTCCAGCCAGAGTTGGAAGA+GGG | - | chr5.1:71806974-71806993 | MS.gene038090:intron | 50.0% | |
TTCTGCCACCAAGTCTATCC+CGG | + | chr5.1:71804424-71804443 | None:intergenic | 50.0% | |
TTGTTTACATGCCTGCTGGG+CGG | - | chr5.1:71806300-71806319 | MS.gene038090:intron | 50.0% | |
! | CCCAGTCTTATCCCACTAAG+TGG | + | chr5.1:71803744-71803763 | None:intergenic | 50.0% |
! | TTCGTTGATGCAGGTTGGAG+GGG | - | chr5.1:71805234-71805253 | MS.gene038090:CDS | 50.0% |
!! | GGTCATGGTCTTATGGTCAG+GGG | - | chr5.1:71805815-71805834 | MS.gene038090:intron | 50.0% |
!! | GTGGTCATGGTCTTATGGTC+AGG | - | chr5.1:71805813-71805832 | MS.gene038090:intron | 50.0% |
!! | GTTACCGGTGAAGAAGCATC+GGG | + | chr5.1:71806401-71806420 | None:intergenic | 50.0% |
AACCCTCTTCCAACTCTGGC+TGG | + | chr5.1:71806979-71806998 | None:intergenic | 55.0% | |
AGGGTCTTGACATTCGGCTG+GGG | - | chr5.1:71805867-71805886 | MS.gene038090:intron | 55.0% | |
AGTCCCAGCCTCCCAATCAA+TGG | + | chr5.1:71804632-71804651 | None:intergenic | 55.0% | |
CAAGGGTCTTGACATTCGGC+TGG | - | chr5.1:71805865-71805884 | MS.gene038090:intron | 55.0% | |
CAGCCGAATGTCAAGACCCT+TGG | + | chr5.1:71805867-71805886 | None:intergenic | 55.0% | |
CAGGAAGAATTGCTCCCTGG+TGG | - | chr5.1:71805794-71805813 | MS.gene038090:intron | 55.0% | |
CAGTATCTCGTGTCTCGGTG+GGG | - | chr5.1:71806731-71806750 | MS.gene038090:intron | 55.0% | |
CCTTCCCGATGCTTCTTCAC+CGG | - | chr5.1:71806394-71806413 | MS.gene038090:CDS | 55.0% | |
CTCCCAATCAATGGAGCCAG+AGG | + | chr5.1:71804623-71804642 | None:intergenic | 55.0% | |
GAATCCCGGGATAGACTTGG+TGG | - | chr5.1:71804416-71804435 | MS.gene038090:intron | 55.0% | |
GAATTGCTCCCTGGTGGTCA+TGG | - | chr5.1:71805800-71805819 | MS.gene038090:intron | 55.0% | |
GCCATTGCTGATATCGGGGT+TGG | - | chr5.1:71806143-71806162 | MS.gene038090:intron | 55.0% | |
GTTGGAGGGGCTTTCACACA+AGG | - | chr5.1:71805247-71805266 | MS.gene038090:CDS | 55.0% | |
TCTGCCACCAAGTCTATCCC+GGG | + | chr5.1:71804423-71804442 | None:intergenic | 55.0% | |
TGGCCCAATGTGGAGTTCCT+GGG | - | chr5.1:71806206-71806225 | MS.gene038090:intron | 55.0% | |
TTGGCCCAATGTGGAGTTCC+TGG | - | chr5.1:71806205-71806224 | MS.gene038090:intron | 55.0% | |
! | CCCTGGTGGTCATGGTCTTA+TGG | - | chr5.1:71805808-71805827 | MS.gene038090:intron | 55.0% |
! | CTCTGGCTCCATTGATTGGG+AGG | - | chr5.1:71804621-71804640 | MS.gene038090:intron | 55.0% |
! | GCTCCATTGATTGGGAGGCT+GGG | - | chr5.1:71804626-71804645 | MS.gene038090:intron | 55.0% |
! | GTGTCTTCGAGTTTGGCTCG+TGG | - | chr5.1:71803856-71803875 | MS.gene038090:CDS | 55.0% |
CAATGGCTGCTGAGGACTGC+AGG | - | chr5.1:71806915-71806934 | MS.gene038090:intron | 60.0% | |
GACGCAGTTGGGAAACCGCA+TGG | - | chr5.1:71806788-71806807 | MS.gene038090:intron | 60.0% | |
TCATAGGCGGTGGCATGGCT+GGG | - | chr5.1:71803433-71803452 | MS.gene038090:intron | 60.0% | |
TTGACATTCGGCTGGGGCAC+AGG | - | chr5.1:71805873-71805892 | MS.gene038090:intron | 60.0% | |
! | GGCTCCATTGATTGGGAGGC+TGG | - | chr5.1:71804625-71804644 | MS.gene038090:intron | 60.0% |
!! | CCGGTGAAGAAGCATCGGGA+AGG | + | chr5.1:71806397-71806416 | None:intergenic | 60.0% |
GTCATAGGCGGTGGCATGGC+TGG | - | chr5.1:71803432-71803451 | MS.gene038090:intron | 65.0% | |
TTACATGCCTGCTGGGCGGC+TGG | - | chr5.1:71806304-71806323 | MS.gene038090:intron | 65.0% | |
TCTTTGGCCAGCCGCCCAGC+AGG | + | chr5.1:71806314-71806333 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 71802844 | 71807030 | 71802844 | ID=MS.gene038090 |
chr5.1 | mRNA | 71802844 | 71807030 | 71802844 | ID=MS.gene038090.t1;Parent=MS.gene038090 |
chr5.1 | exon | 71806991 | 71807030 | 71806991 | ID=MS.gene038090.t1.exon1;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71806991 | 71807030 | 71806991 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71806380 | 71806495 | 71806380 | ID=MS.gene038090.t1.exon2;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71806380 | 71806495 | 71806380 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71805382 | 71805470 | 71805382 | ID=MS.gene038090.t1.exon3;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71805382 | 71805470 | 71805382 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71805166 | 71805279 | 71805166 | ID=MS.gene038090.t1.exon4;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71805166 | 71805279 | 71805166 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71804913 | 71805000 | 71804913 | ID=MS.gene038090.t1.exon5;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71804913 | 71805000 | 71804913 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71804700 | 71804785 | 71804700 | ID=MS.gene038090.t1.exon6;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71804700 | 71804785 | 71804700 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71804525 | 71804627 | 71804525 | ID=MS.gene038090.t1.exon7;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71804525 | 71804627 | 71804525 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71803980 | 71804077 | 71803980 | ID=MS.gene038090.t1.exon8;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71803980 | 71804077 | 71803980 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71803459 | 71803888 | 71803459 | ID=MS.gene038090.t1.exon9;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71803459 | 71803888 | 71803459 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
chr5.1 | exon | 71802844 | 71803146 | 71802844 | ID=MS.gene038090.t1.exon10;Parent=MS.gene038090.t1 |
chr5.1 | CDS | 71802844 | 71803146 | 71802844 | ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1 |
Gene Sequence |
Protein sequence |