AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038090.t1 MTR_5g090300 98.975 488 5 0 1 488 1 488 0.0 999
MS.gene038090.t1 MTR_3g449620 83.469 490 79 1 1 488 1 490 0.0 818
MS.gene038090.t1 MTR_3g064370 64.634 492 170 1 1 488 1 492 0.0 658
MS.gene038090.t1 MTR_3g064370 65.060 415 141 1 78 488 1 415 0.0 563
MS.gene038090.t1 MTR_3g064370 67.609 389 126 0 1 389 1 389 0.0 555
MS.gene038090.t1 MTR_1g023510 34.737 475 260 12 30 454 867 1341 4.59e-67 234
MS.gene038090.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 7.44e-67 234
MS.gene038090.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 9.63e-67 233
MS.gene038090.t1 MTR_5g087920 76.000 125 30 0 280 404 12 136 6.29e-60 193
MS.gene038090.t1 MTR_6g084700 34.904 467 261 15 29 467 221 672 3.89e-55 197
MS.gene038090.t1 MTR_3g055090 32.373 451 259 13 29 454 160 589 1.74e-53 192
MS.gene038090.t1 MTR_8g464450 31.938 454 257 15 29 454 163 592 1.92e-42 161
MS.gene038090.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 2.46e-41 158
MS.gene038090.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 3.04e-41 158
MS.gene038090.t1 MTR_2g039160 26.715 554 287 18 26 472 4 545 2.63e-33 132
MS.gene038090.t1 MTR_3g033000 28.009 432 265 15 53 458 33 444 1.39e-30 124
MS.gene038090.t1 MTR_3g033000 27.586 377 231 14 53 407 33 389 8.73e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038090.t1 AT2G43020 78.776 490 102 2 1 488 1 490 0.0 788
MS.gene038090.t1 AT3G59050 78.367 490 102 3 1 488 1 488 0.0 781
MS.gene038090.t1 AT1G65840 62.474 477 171 2 20 488 21 497 0.0 630
MS.gene038090.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene038090.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene038090.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene038090.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene038090.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene038090.t1 AT1G62830 34.475 467 271 14 28 473 266 718 1.27e-54 196
MS.gene038090.t1 AT3G10390 32.700 474 264 15 14 456 169 618 5.24e-50 183
MS.gene038090.t1 AT3G10390 33.333 474 261 16 14 456 169 618 1.01e-49 182
MS.gene038090.t1 AT3G13682 33.966 474 254 14 17 454 140 590 1.09e-49 181
MS.gene038090.t1 AT3G10390 32.700 474 264 15 14 456 221 670 1.39e-49 182
MS.gene038090.t1 AT3G10390 33.333 474 261 16 14 456 221 670 1.47e-49 182
MS.gene038090.t1 AT5G13700 28.125 448 263 15 53 475 30 443 2.54e-34 134
MS.gene038090.t1 AT4G29720 23.766 547 290 13 26 465 3 529 3.10e-34 135

Find 154 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTTCAACAACGTATTT+TGG 0.147701 5.1:-71803666 MS.gene038090:CDS
AAATGAACCTTTGCGGGAAT+TGG 0.219044 5.1:+71806983 None:intergenic
CTAGTTCCCCGTATCTTTCT+AGG 0.225042 5.1:+71802906 None:intergenic
CCCTGGTGGTCATGGTCTTA+TGG 0.250033 5.1:-71804044 MS.gene038090:CDS
GTAGATAACTTATTCTTTGC+AGG 0.258142 5.1:-71803016 MS.gene038090:CDS
ACTTCATGATGCTTCATTTC+AGG 0.276706 5.1:-71806379 MS.gene038090:intron
TTGGCCCAATGTGGAGTTCC+TGG 0.277098 5.1:-71803647 MS.gene038090:CDS
CAGCTATGCGCTCTTTGATA+TGG 0.277998 5.1:-71804981 MS.gene038090:CDS
GGCTCCATTGATTGGGAGGC+TGG 0.279036 5.1:-71805227 MS.gene038090:CDS
GTCATAGGCGGTGGCATGGC+TGG 0.307377 5.1:-71806420 MS.gene038090:CDS
CTATCATTGCTGTACCTCTT+GGG 0.307858 5.1:-71803789 MS.gene038090:CDS
TCAGGGCGACAAAGATAGTT+AGG 0.311809 5.1:-71803870 MS.gene038090:intron
TCTTTCCAATCTGGAAGCTT+TGG 0.318953 5.1:+71803736 None:intergenic
GCTAATAATGACCTCAGTTC+TGG 0.323376 5.1:+71804688 None:intergenic
ATTCACACTGATTACTCATT+TGG 0.325638 5.1:-71805409 MS.gene038090:CDS
GCTATCATTGCTGTACCTCT+TGG 0.347891 5.1:-71803790 MS.gene038090:CDS
AATCCTCTGGCTCCATTGAT+TGG 0.348932 5.1:-71805235 MS.gene038090:CDS
GAAGCTGCCATTGCTGATAT+CGG 0.349601 5.1:-71803715 MS.gene038090:CDS
GTGAAGGTGACTACTGAAAA+TGG 0.357159 5.1:-71803835 MS.gene038090:CDS
AAGATAGTTAGGGGATATAA+TGG 0.370197 5.1:-71803859 MS.gene038090:CDS
GTTCTTGTTTACATGCCTGC+TGG 0.371256 5.1:-71803556 MS.gene038090:CDS
TTACATGCCTGCTGGGCGGC+TGG 0.383621 5.1:-71803548 MS.gene038090:CDS
ATGGCAGCTTCTTTCCAATC+TGG 0.384672 5.1:+71803727 None:intergenic
ATTCTATATCACTGAAATGT+TGG 0.387439 5.1:-71804531 MS.gene038090:CDS
GTGGTCATGGTCTTATGGTC+AGG 0.387478 5.1:-71804039 MS.gene038090:CDS
AATGAACCTTTGCGGGAATT+GGG 0.395567 5.1:+71806984 None:intergenic
TGTCCTATACGATCATGATT+TGG 0.402825 5.1:-71805170 MS.gene038090:CDS
TTGGCTAGGGTATGTATAAC+AGG 0.405023 5.1:+71804007 None:intergenic
GTAGTTGCTGAGACATCTTA+TGG 0.410548 5.1:-71803622 MS.gene038090:CDS
TCACCGTCTGTTATTGTCAT+AGG 0.417890 5.1:-71806435 MS.gene038090:CDS
TCTTTGGCCAGCCGCCCAGC+AGG 0.424805 5.1:+71803541 None:intergenic
CAAGGGTCTTGACATTCGGC+TGG 0.431094 5.1:-71803987 MS.gene038090:CDS
ATCCTCTGGCTCCATTGATT+GGG 0.431803 5.1:-71805234 MS.gene038090:CDS
TTGAGCCAAAGCTTCCAGAT+TGG 0.433940 5.1:-71803741 MS.gene038090:CDS
AATTGAAAGTGCACGAAGAA+TGG 0.438137 5.1:+71804726 None:intergenic
CCTATAGTTATGACGCAGTT+GGG 0.440336 5.1:-71803075 MS.gene038090:CDS
AAGCTGCCATTGCTGATATC+GGG 0.442969 5.1:-71803714 MS.gene038090:CDS
GAATTGCTCCCTGGTGGTCA+TGG 0.446683 5.1:-71804052 MS.gene038090:CDS
TTTCCAAATCATGATCGTAT+AGG 0.448434 5.1:+71805167 None:intergenic
CATGATGCACCTAGGTCAAC+AGG 0.448585 5.1:+71805382 None:intergenic
TTCTATATCACTGAAATGTT+GGG 0.449054 5.1:-71804530 MS.gene038090:CDS
TTCTTGTTTACATGCCTGCT+GGG 0.453430 5.1:-71803555 MS.gene038090:CDS
CAAGAGTTGGTTACAGAAGT+TGG 0.457743 5.1:-71804941 MS.gene038090:CDS
CAGGGCGACAAAGATAGTTA+GGG 0.457896 5.1:-71803869 MS.gene038090:CDS
TGGCCCAATGTGGAGTTCCT+GGG 0.459578 5.1:-71803646 MS.gene038090:CDS
GCTCCATTGATTGGGAGGCT+GGG 0.462828 5.1:-71805226 MS.gene038090:CDS
TTGACATTCGGCTGGGGCAC+AGG 0.462919 5.1:-71803979 MS.gene038090:intron
GCAGGCATGTAAACAAGAAC+AGG 0.463011 5.1:+71803559 None:intergenic
AACCCTCTTCCAACTCTGGC+TGG 0.467559 5.1:+71802876 None:intergenic
TTACATACAGGGTCTGTTCA+TGG 0.475124 5.1:-71802977 MS.gene038090:CDS
TCAGTATCTCGTGTCTCGGT+GGG 0.475314 5.1:-71803122 MS.gene038090:CDS
CCCAACTGCGTCATAACTAT+AGG 0.475903 5.1:+71803075 None:intergenic
GCAAAGAATAAGTTATCTAC+AGG 0.484780 5.1:+71803019 None:intergenic
CAATGGCTGCTGAGGACTGC+AGG 0.485843 5.1:-71802937 MS.gene038090:CDS
GTTCATGGTGCATACTCTAC+TGG 0.488310 5.1:-71802962 MS.gene038090:CDS
GCAACGAGTGTATTACATAC+AGG 0.492456 5.1:-71802989 MS.gene038090:CDS
TTCTGCCACCAAGTCTATCC+CGG 0.493984 5.1:+71805431 None:intergenic
AGTCCCAGCCTCCCAATCAA+TGG 0.497011 5.1:+71805223 None:intergenic
TGGTCATGGTCTTATGGTCA+GGG 0.502310 5.1:-71804038 MS.gene038090:CDS
TAGATAACTTATTCTTTGCA+GGG 0.507097 5.1:-71803015 MS.gene038090:CDS
GCCATTGCTGATATCGGGGT+TGG 0.507133 5.1:-71803709 MS.gene038090:CDS
TTCGTTGATGCAGGTTGGAG+GGG 0.509332 5.1:-71804618 MS.gene038090:intron
CTGTTGACCTAGGTGCATCA+TGG 0.509864 5.1:-71805381 MS.gene038090:intron
CTTAATCTTCACAAAGCGGC+AGG 0.511464 5.1:-71803586 MS.gene038090:CDS
TAGCCAAGGGTCTTGACATT+CGG 0.512251 5.1:-71803991 MS.gene038090:CDS
CTCTGGCTCCATTGATTGGG+AGG 0.513671 5.1:-71805231 MS.gene038090:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.515557 5.1:-71804578 MS.gene038090:CDS
TGCGTGTCCTAGAAAGATAC+GGG 0.517425 5.1:-71802913 MS.gene038090:CDS
TCCTATAGTTATGACGCAGT+TGG 0.517976 5.1:-71803076 MS.gene038090:CDS
TCATAGGCGGTGGCATGGCT+GGG 0.518133 5.1:-71806419 MS.gene038090:CDS
ACTGAACCCTCTTCCAACTC+TGG 0.519154 5.1:+71802872 None:intergenic
ACCATAAGACCATGACCACC+AGG 0.519331 5.1:+71804043 None:intergenic
TGGTCTGTATGAGAGGTTGC+GGG 0.523316 5.1:-71803044 MS.gene038090:CDS
CAGCCGAATGTCAAGACCCT+TGG 0.525666 5.1:+71803988 None:intergenic
ATGCGTGTCCTAGAAAGATA+CGG 0.527553 5.1:-71802914 MS.gene038090:CDS
ACTCCCAGGAACTCCACATT+GGG 0.528892 5.1:+71803643 None:intergenic
TCTGTTATTGTCATAGGCGG+TGG 0.531300 5.1:-71806429 MS.gene038090:CDS
ATGGTCTGTATGAGAGGTTG+CGG 0.532017 5.1:-71803045 MS.gene038090:CDS
ATTCGTTGATGCAGGTTGGA+GGG 0.533554 5.1:-71804619 MS.gene038090:intron
CAAATACGAGATATCAGAAG+TGG 0.533727 5.1:+71802845 None:intergenic
CCTTCCCGATGCTTCTTCAC+CGG 0.535712 5.1:-71803458 MS.gene038090:intron
GAATCAAGTTCCACAAGAGT+TGG 0.536968 5.1:-71804954 MS.gene038090:CDS
CTATGCGCTCTTTGATATGG+AGG 0.537548 5.1:-71804978 MS.gene038090:CDS
TGAAGGTGACTACTGAAAAT+GGG 0.540274 5.1:-71803834 MS.gene038090:CDS
AAGGGTCTTGACATTCGGCT+GGG 0.542089 5.1:-71803986 MS.gene038090:CDS
ATAACAGACGGTGACCTTCG+AGG 0.542275 5.1:+71806444 None:intergenic
AATTCGTTGATGCAGGTTGG+AGG 0.542488 5.1:-71804620 MS.gene038090:intron
ATTTATGCAGAATGGAGGGC+TGG 0.545277 5.1:-71804570 MS.gene038090:CDS
AGATATATTCCAGCCAGAGT+TGG 0.546397 5.1:-71802885 MS.gene038090:CDS
TTAGAATCCCGGGATAGACT+TGG 0.547928 5.1:-71805439 MS.gene038090:CDS
AGGGTCTTGACATTCGGCTG+GGG 0.550051 5.1:-71803985 MS.gene038090:CDS
TACTGGAACAATGGCTGCTG+AGG 0.550086 5.1:-71802945 MS.gene038090:CDS
TTCAGTATCTCGTGTCTCGG+TGG 0.557308 5.1:-71803123 MS.gene038090:CDS
TGCATACTCTACTGGAACAA+TGG 0.558563 5.1:-71802954 MS.gene038090:CDS
GAATGTCAAGACCCTTGGCT+AGG 0.558837 5.1:+71803993 None:intergenic
GAATCCCGGGATAGACTTGG+TGG 0.558858 5.1:-71805436 MS.gene038090:CDS
GTTGGAGGGGCTTTCACACA+AGG 0.559617 5.1:-71804605 MS.gene038090:CDS
AGTTACCGGTGAAGAAGCAT+CGG 0.560061 5.1:+71803453 None:intergenic
TACTCCCAGGAACTCCACAT+TGG 0.560675 5.1:+71803642 None:intergenic
GCAGACAGATAATGTACGAC+AGG 0.565366 5.1:-71804767 MS.gene038090:intron
CAGAGTTATCCTCACAAGTA+CGG 0.566480 5.1:+71805191 None:intergenic
TCCTCACAAGTACGGTAAAG+AGG 0.571437 5.1:+71805199 None:intergenic
AATGTCAAGACCCTTGGCTA+GGG 0.571742 5.1:+71803994 None:intergenic
TTTCACACAAGGTGCTTCAG+TGG 0.575044 5.1:-71804594 MS.gene038090:CDS
TAGGGGATATAATGGAGTGA+AGG 0.576412 5.1:-71803851 MS.gene038090:CDS
TGAAGCATCATGAAGTGCAC+GGG 0.579978 5.1:+71806386 None:intergenic
ATTCCAGCCAGAGTTGGAAG+AGG 0.581520 5.1:-71802879 MS.gene038090:CDS
AACCGCATGGTCTGTATGAG+AGG 0.584210 5.1:-71803051 MS.gene038090:CDS
CTAGGGTATGTATAACAGGC+AGG 0.584240 5.1:+71804011 None:intergenic
ATGTCTCAGCAACTACTCCC+AGG 0.584539 5.1:+71803629 None:intergenic
ACCTCTTTACCGTACTTGTG+AGG 0.587430 5.1:-71805200 MS.gene038090:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 5.1:-71804575 MS.gene038090:CDS
ATGAAGCATCATGAAGTGCA+CGG 0.590616 5.1:+71806385 None:intergenic
TATGCGCTCTTTGATATGGA+GGG 0.591981 5.1:-71804977 MS.gene038090:CDS
ATCACTGAAATGTTGGGACC+AGG 0.592003 5.1:-71804524 MS.gene038090:intron
GACGCAGTTGGGAAACCGCA+TGG 0.594696 5.1:-71803064 MS.gene038090:CDS
ATGTTGATCAGCAGCCTCGA+AGG 0.595305 5.1:-71806458 MS.gene038090:CDS
TCTGCCACCAAGTCTATCCC+GGG 0.596007 5.1:+71805432 None:intergenic
AGGGCGACAAAGATAGTTAG+GGG 0.596239 5.1:-71803868 MS.gene038090:CDS
TGTTATACATACCCTAGCCA+AGG 0.597299 5.1:-71804005 MS.gene038090:CDS
ACTAATCCCAATTCCCGCAA+AGG 0.600311 5.1:-71806990 MS.gene038090:intron
TATACGATCATGATTTGGAA+AGG 0.602711 5.1:-71805165 MS.gene038090:intron
GTTACCGGTGAAGAAGCATC+GGG 0.603982 5.1:+71803454 None:intergenic
CTCCCAATCAATGGAGCCAG+AGG 0.605374 5.1:+71805232 None:intergenic
TATCATTGCTGTACCTCTTG+GGG 0.605759 5.1:-71803788 MS.gene038090:CDS
GGTACAGATATTAATTCACT+AGG 0.607199 5.1:-71803100 MS.gene038090:CDS
CAACGAGTGTATTACATACA+GGG 0.607621 5.1:-71802988 MS.gene038090:CDS
TTACAGGAAGAATTGCTCCC+TGG 0.609122 5.1:-71804061 MS.gene038090:intron
AGATTCAGTATCTCGTGTCT+CGG 0.611152 5.1:-71803126 MS.gene038090:CDS
TGATTATGATTCAGGTTGCA+TGG 0.611159 5.1:-71805271 MS.gene038090:intron
TTCCAGCCAGAGTTGGAAGA+GGG 0.614724 5.1:-71802878 MS.gene038090:CDS
AGTTTGCAATGAGAATCCTC+TGG 0.615479 5.1:-71805248 MS.gene038090:CDS
TGGTATTTATGCAGAATGGA+GGG 0.621034 5.1:-71804574 MS.gene038090:CDS
TATTGTCATAGGCGGTGGCA+TGG 0.626229 5.1:-71806424 MS.gene038090:CDS
TCCAACCCCGATATCAGCAA+TGG 0.632597 5.1:+71803708 None:intergenic
GGTCATGGTCTTATGGTCAG+GGG 0.639940 5.1:-71804037 MS.gene038090:CDS
AGCTGCCATTGCTGATATCG+GGG 0.641150 5.1:-71803713 MS.gene038090:CDS
CCGTCTGTTATTGTCATAGG+CGG 0.645271 5.1:-71806432 MS.gene038090:CDS
ACTTCTGTAACCAACTCTTG+TGG 0.651673 5.1:+71804944 None:intergenic
CCGGTGAAGAAGCATCGGGA+AGG 0.655055 5.1:+71803458 None:intergenic
ATCTTTACCATGATGCACCT+AGG 0.655995 5.1:+71805374 None:intergenic
CAGTATCTCGTGTCTCGGTG+GGG 0.656943 5.1:-71803121 MS.gene038090:CDS
TTGAAAGAAAGCCAGAACTG+AGG 0.657435 5.1:-71804699 MS.gene038090:intron
ATGCGCTCTTTGATATGGAG+GGG 0.658060 5.1:-71804976 MS.gene038090:CDS
TTTGCTTTCAGTACCCCAAG+AGG 0.665152 5.1:+71803775 None:intergenic
CTTTCTTAATCTTCACAAAG+CGG 0.672988 5.1:-71803590 MS.gene038090:CDS
CAGGAAGAATTGCTCCCTGG+TGG 0.673379 5.1:-71804058 MS.gene038090:CDS
GTTATACATACCCTAGCCAA+GGG 0.684397 5.1:-71804004 MS.gene038090:CDS
AGATAACTTATTCTTTGCAG+GGG 0.691736 5.1:-71803014 MS.gene038090:CDS
CCATAAGACCATGACCACCA+GGG 0.693042 5.1:+71804044 None:intergenic
CCGCCTATGACAATAACAGA+CGG 0.695318 5.1:+71806432 None:intergenic
TTGTTTACATGCCTGCTGGG+CGG 0.710778 5.1:-71803552 MS.gene038090:CDS
AACCTCTCATACAGACCATG+CGG 0.717356 5.1:+71803049 None:intergenic
GCGTGTCCTAGAAAGATACG+GGG 0.777230 5.1:-71802912 MS.gene038090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGAAATTTAATCAATT+AGG + chr5.1:71803088-71803107 None:intergenic 10.0%
!! ATATTATAATATTTGATGTA+AGG - chr5.1:71805641-71805660 MS.gene038090:intron 10.0%
!! TATTATAATATTTGATGTAA+GGG - chr5.1:71805642-71805661 MS.gene038090:intron 10.0%
!!! TTTTATATATTGGTAAAAAA+CGG - chr5.1:71803125-71803144 MS.gene038090:CDS 10.0%
!! AAAAAAAGTGATAAATCATT+TGG - chr5.1:71803169-71803188 MS.gene038090:intron 15.0%
!! AAAAAAGTGATAAATCATTT+GGG - chr5.1:71803170-71803189 MS.gene038090:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG - chr5.1:71804818-71804837 MS.gene038090:intron 15.0%
!! AGGAAAAACAAAATAATTAA+AGG + chr5.1:71804292-71804311 None:intergenic 15.0%
!! TTTATATATTGGTAAAAAAC+GGG - chr5.1:71803126-71803145 MS.gene038090:CDS 15.0%
!!! AATTTCTAATTTTTATGATC+AGG - chr5.1:71803097-71803116 MS.gene038090:CDS 15.0%
!!! ATGCATTTTTTGTTATTATT+TGG - chr5.1:71804713-71804732 MS.gene038090:CDS 15.0%
!!! ATTTAACTTGTTTTTTACAA+TGG - chr5.1:71806439-71806458 MS.gene038090:CDS 15.0%
!!! ATTTCTAATTTTTATGATCA+GGG - chr5.1:71803098-71803117 MS.gene038090:CDS 15.0%
!!! TTACATAAATATTTTTTACG+CGG - chr5.1:71805439-71805458 MS.gene038090:CDS 15.0%
!!! TTTAAAACTATTATAGTTAC+CGG + chr5.1:71806416-71806435 None:intergenic 15.0%
!!! TTTTTTTTTTGTTCTGAATT+TGG - chr5.1:71802942-71802961 MS.gene038090:CDS 15.0%
!! AACAAAATAATTAAAGGAGA+TGG + chr5.1:71804286-71804305 None:intergenic 20.0%
!! AATAATTCAAAGAGTTGTAT+TGG - chr5.1:71803224-71803243 MS.gene038090:intron 20.0%
!! AATATCCTGATCATAAAAAT+TGG + chr5.1:71803054-71803073 None:intergenic 20.0%
!! AATTGGAAATTTGATCAATT+AGG + chr5.1:71803037-71803056 None:intergenic 20.0%
!! AGATCTAAAGATTAATGTAT+TGG - chr5.1:71803675-71803694 MS.gene038090:CDS 20.0%
!! ATTTGATTAGATTATAGATC+TGG - chr5.1:71802974-71802993 MS.gene038090:CDS 20.0%
!! CCAAAATAAAAAATGAAAAG+AGG + chr5.1:71802904-71802923 None:intergenic 20.0%
!! GAATGGTATATTATTTGATA+TGG - chr5.1:71804817-71804836 MS.gene038090:intron 20.0%
!! TCTAATAAAAAAGATCAACA+AGG + chr5.1:71805509-71805528 None:intergenic 20.0%
!! TTTATTAGACACATTATTGA+AGG - chr5.1:71805520-71805539 MS.gene038090:intron 20.0%
!!! AATTTCCAATTTTTATGATC+AGG - chr5.1:71803046-71803065 MS.gene038090:CDS 20.0%
!!! AGTTCTTATTTATACACTAT+TGG - chr5.1:71805562-71805581 MS.gene038090:intron 20.0%
!!! ATTTGTTTGAAGTTTTGTTT+TGG - chr5.1:71805901-71805920 MS.gene038090:intron 20.0%
!!! CCTCTTTTCATTTTTTATTT+TGG - chr5.1:71802901-71802920 MS.gene038090:CDS 20.0%
!!! TCAGGGTATTTTTTATATAT+TGG - chr5.1:71803115-71803134 MS.gene038090:CDS 20.0%
!!! TTGAGTTTTGATAAAATGAA+TGG + chr5.1:71805213-71805232 None:intergenic 20.0%
!!! TTTTATTTTAGCATTGAAAG+TGG - chr5.1:71804557-71804576 MS.gene038090:CDS 20.0%
! AATGTTTAAATGAGAAGAAG+AGG + chr5.1:71804312-71804331 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG + chr5.1:71804357-71804376 None:intergenic 25.0%
! AGTTAAAAAATGAACCTTTG+CGG + chr5.1:71802879-71802898 None:intergenic 25.0%
! ATAATATCCTCAATAAAAGC+CGG + chr5.1:71805628-71805647 None:intergenic 25.0%
! ATTCTATATCACTGAAATGT+TGG - chr5.1:71805321-71805340 MS.gene038090:intron 25.0%
! CTAATTGCAATCTATTTCAT+TGG - chr5.1:71804004-71804023 MS.gene038090:CDS 25.0%
! TAAACTTAAGTTACATGTAC+AGG + chr5.1:71803981-71804000 None:intergenic 25.0%
! TACAATGGAATAAAAGTAAG+AGG - chr5.1:71806454-71806473 MS.gene038090:CDS 25.0%
! TTCTATATCACTGAAATGTT+GGG - chr5.1:71805322-71805341 MS.gene038090:intron 25.0%
! TTGGATCGAAATATAGTTTA+TGG - chr5.1:71803694-71803713 MS.gene038090:CDS 25.0%
!! AAAACCATTTTATGCTATCT+TGG - chr5.1:71804106-71804125 MS.gene038090:intron 25.0%
!! AAACCATTTTATGCTATCTT+GGG - chr5.1:71804107-71804126 MS.gene038090:intron 25.0%
!! GCTTTGTTAGAGTTTAAAAT+TGG - chr5.1:71804150-71804169 MS.gene038090:intron 25.0%
!!! AGTTCATTACTTTTTTGTTC+AGG - chr5.1:71804382-71804401 MS.gene038090:intron 25.0%
!!! AGTTTTGATAAAATGAATGG+TGG + chr5.1:71805210-71805229 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG - chr5.1:71804940-71804959 MS.gene038090:CDS 25.0%
!!! CATTTTAGAAGATAAAGTGT+GGG - chr5.1:71806523-71806542 MS.gene038090:intron 25.0%
!!! GTGTTTTTTTTGACATGTTT+TGG - chr5.1:71803291-71803310 MS.gene038090:intron 25.0%
!!! TAGATTATAGATCTGGTTTT+AGG - chr5.1:71802981-71803000 MS.gene038090:CDS 25.0%
!!! TTGTTGTATTTTGGTTCAAT+AGG - chr5.1:71804056-71804075 MS.gene038090:CDS 25.0%
!!! TTTGATGATACCTATTTTCA+GGG - chr5.1:71805965-71805984 MS.gene038090:intron 25.0%
AAGACCTAGATAAACTATGA+GGG - chr5.1:71803639-71803658 MS.gene038090:CDS 30.0%
AAGATAGTTAGGGGATATAA+TGG - chr5.1:71805993-71806012 MS.gene038090:intron 30.0%
ATTGGTAAAAAACGGGAATA+GGG - chr5.1:71803133-71803152 MS.gene038090:intron 30.0%
CTTTCTTAATCTTCACAAAG+CGG - chr5.1:71806262-71806281 MS.gene038090:intron 30.0%
GGTACAGATATTAATTCACT+AGG - chr5.1:71806752-71806771 MS.gene038090:intron 30.0%
GTTAAAAAATGAACCTTTGC+GGG + chr5.1:71802878-71802897 None:intergenic 30.0%
TAACCCAAGATAGCATAAAA+TGG + chr5.1:71804113-71804132 None:intergenic 30.0%
TATTGGTAAAAAACGGGAAT+AGG - chr5.1:71803132-71803151 MS.gene038090:intron 30.0%
TGAAGGACACAATTATTAAG+TGG - chr5.1:71805537-71805556 MS.gene038090:intron 30.0%
TGTGAGTATATGAAACCATA+CGG + chr5.1:71805695-71805714 None:intergenic 30.0%
TTTCCAAATCATGATCGTAT+AGG + chr5.1:71804688-71804707 None:intergenic 30.0%
! AGACATTTTCTCAATGTCTT+TGG + chr5.1:71806330-71806349 None:intergenic 30.0%
! ATTCACACTGATTACTCATT+TGG - chr5.1:71804443-71804462 MS.gene038090:intron 30.0%
! TAATGATATGCCATTTGTAC+CGG - chr5.1:71805606-71805625 MS.gene038090:intron 30.0%
! TACACTTCAACAACGTATTT+TGG - chr5.1:71806186-71806205 MS.gene038090:intron 30.0%
! TATACGATCATGATTTGGAA+AGG - chr5.1:71804687-71804706 MS.gene038090:intron 30.0%
! TGATTGCGATTGTTGTATTT+TGG - chr5.1:71804047-71804066 MS.gene038090:CDS 30.0%
!! CTTTGATGATACCTATTTTC+AGG - chr5.1:71805964-71805983 MS.gene038090:intron 30.0%
!! GCATTTTAGAAGATAAAGTG+TGG - chr5.1:71806522-71806541 MS.gene038090:intron 30.0%
!!! ACACTATTGGTTTGAGTTTT+AGG - chr5.1:71805575-71805594 MS.gene038090:intron 30.0%
!!! CATAAATATTTTTTACGCGG+TGG - chr5.1:71805442-71805461 MS.gene038090:CDS 30.0%
AAACCGTGTTCAAGATGTTT+GGG - chr5.1:71805361-71805380 MS.gene038090:intron 35.0%
AAACTCAAATTCGTTGATGC+AGG - chr5.1:71805225-71805244 MS.gene038090:CDS 35.0%
AAAGTGGCTGATTATGATTC+AGG - chr5.1:71804573-71804592 MS.gene038090:CDS 35.0%
ACAAGGACAAAGAACTGAAA+TGG + chr5.1:71805492-71805511 None:intergenic 35.0%
ACTTCATGATGCTTCATTTC+AGG - chr5.1:71803473-71803492 MS.gene038090:CDS 35.0%
ATATGTCACCATGTGGAAAT+GGG + chr5.1:71804229-71804248 None:intergenic 35.0%
ATCATCAAAGCCAGTTAGTT+TGG + chr5.1:71805954-71805973 None:intergenic 35.0%
ATTCTGTAGCCTACAAAACA+TGG + chr5.1:71806636-71806655 None:intergenic 35.0%
CAAATACGAGATATCAGAAG+TGG + chr5.1:71807010-71807029 None:intergenic 35.0%
CAACGAGTGTATTACATACA+GGG - chr5.1:71806864-71806883 MS.gene038090:intron 35.0%
GAAGACCTAGATAAACTATG+AGG - chr5.1:71803638-71803657 MS.gene038090:CDS 35.0%
GAGATACTGAATCTGCATAA+AGG + chr5.1:71806720-71806739 None:intergenic 35.0%
GATTAATAAGTGACTCCGTA+TGG - chr5.1:71805677-71805696 MS.gene038090:intron 35.0%
GCTATGCACAGAAACATAAA+TGG + chr5.1:71806673-71806692 None:intergenic 35.0%
GTAACCAGGTATATAGAGAA+GGG + chr5.1:71805775-71805794 None:intergenic 35.0%
GTTTCCCTCATAGTTTATCT+AGG + chr5.1:71803646-71803665 None:intergenic 35.0%
GTTTGGTAAACCAACAAAAC+AGG + chr5.1:71805937-71805956 None:intergenic 35.0%
TAAAAGTAAGAGGTTCAGAG+TGG - chr5.1:71806464-71806483 MS.gene038090:CDS 35.0%
TCAAACCAAACCATACCTTT+GGG - chr5.1:71804196-71804215 MS.gene038090:intron 35.0%
TCAATAAAAGCCGGTACAAA+TGG + chr5.1:71805619-71805638 None:intergenic 35.0%
TCAGTGGTATTTATGCAGAA+TGG - chr5.1:71805274-71805293 MS.gene038090:intron 35.0%
TCGACACTGGTAATAATTTG+AGG - chr5.1:71803572-71803591 MS.gene038090:CDS 35.0%
TGAAGGTGACTACTGAAAAT+GGG - chr5.1:71806018-71806037 MS.gene038090:intron 35.0%
TGGTATTTATGCAGAATGGA+GGG - chr5.1:71805278-71805297 MS.gene038090:intron 35.0%
TGTAACCAGGTATATAGAGA+AGG + chr5.1:71805776-71805795 None:intergenic 35.0%
TGTCCTATACGATCATGATT+TGG - chr5.1:71804682-71804701 MS.gene038090:intron 35.0%
TGTTGTTGTACTGTCTATGT+AGG - chr5.1:71803357-71803376 MS.gene038090:intron 35.0%
TTCTCTATATACCTGGTTAC+AGG - chr5.1:71805775-71805794 MS.gene038090:intron 35.0%
TTGGGTTATACAACTTCACT+TGG - chr5.1:71804125-71804144 MS.gene038090:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG - chr5.1:71805924-71805943 MS.gene038090:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG + chr5.1:71805129-71805148 None:intergenic 35.0%
! ATGTGTACTGTCTAGTTTAG+AGG - chr5.1:71806594-71806613 MS.gene038090:intron 35.0%
! TCTCTTGAACCATGTTTTGT+AGG - chr5.1:71806624-71806643 MS.gene038090:intron 35.0%
! TGTTTCTGTGCATAGCTATA+TGG - chr5.1:71806677-71806696 MS.gene038090:intron 35.0%
!! TGATTATGATTCAGGTTGCA+TGG - chr5.1:71804581-71804600 MS.gene038090:CDS 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG - chr5.1:71805941-71805960 MS.gene038090:intron 35.0%
!! TTGGTTCCTCTAAAGTGATA+GGG - chr5.1:71806489-71806508 MS.gene038090:intron 35.0%
!! TTTGGTTCCTCTAAAGTGAT+AGG - chr5.1:71806488-71806507 MS.gene038090:intron 35.0%
!!! ATTTGTACCGGCTTTTATTG+AGG - chr5.1:71805618-71805637 MS.gene038090:intron 35.0%
AAATGAACCTTTGCGGGAAT+TGG + chr5.1:71802872-71802891 None:intergenic 40.0%
AAATGTTGGGACCAGGTAAT+TGG - chr5.1:71805335-71805354 MS.gene038090:intron 40.0%
AACCCCAAACATCTTGAACA+CGG + chr5.1:71805367-71805386 None:intergenic 40.0%
AACCGTGTTCAAGATGTTTG+GGG - chr5.1:71805362-71805381 MS.gene038090:intron 40.0%
AATGAACCTTTGCGGGAATT+GGG + chr5.1:71802871-71802890 None:intergenic 40.0%
ACACTGACACTTCAGATTGA+AGG + chr5.1:71803802-71803821 None:intergenic 40.0%
ACTTCTGTAACCAACTCTTG+TGG + chr5.1:71804911-71804930 None:intergenic 40.0%
AGATATATTCCAGCCAGAGT+TGG - chr5.1:71806967-71806986 MS.gene038090:intron 40.0%
AGATTCAGTATCTCGTGTCT+CGG - chr5.1:71806726-71806745 MS.gene038090:intron 40.0%
AGTTTGCAATGAGAATCCTC+TGG - chr5.1:71804604-71804623 MS.gene038090:CDS 40.0%
ATACCATTCAAGATGACCAG+AGG + chr5.1:71804806-71804825 None:intergenic 40.0%
ATCTTTACCATGATGCACCT+AGG + chr5.1:71804481-71804500 None:intergenic 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG + chr5.1:71805978-71805997 None:intergenic 40.0%
ATGCGTGTCCTAGAAAGATA+CGG - chr5.1:71806938-71806957 MS.gene038090:intron 40.0%
ATGGATAGTCGTATCACTAG+AGG - chr5.1:71803610-71803629 MS.gene038090:CDS 40.0%
CAGAGTTATCCTCACAAGTA+CGG + chr5.1:71804664-71804683 None:intergenic 40.0%
CATATGTCACCATGTGGAAA+TGG + chr5.1:71804230-71804249 None:intergenic 40.0%
CCTATAGTTATGACGCAGTT+GGG - chr5.1:71806777-71806796 MS.gene038090:intron 40.0%
CGTGTGAGTATCATTACTCT+TGG + chr5.1:71803552-71803571 None:intergenic 40.0%
CTAAAGTGATAGGGTCTGAA+GGG - chr5.1:71806498-71806517 MS.gene038090:intron 40.0%
CTATCATTGCTGTACCTCTT+GGG - chr5.1:71806063-71806082 MS.gene038090:intron 40.0%
CTTCAGATTGAAGGTTTGTC+TGG + chr5.1:71803793-71803812 None:intergenic 40.0%
GAAACCGTGTTCAAGATGTT+TGG - chr5.1:71805360-71805379 MS.gene038090:intron 40.0%
GAAATGGGAATTTGTCCCAA+AGG + chr5.1:71804214-71804233 None:intergenic 40.0%
GAATCAAGTTCCACAAGAGT+TGG - chr5.1:71804898-71804917 MS.gene038090:intron 40.0%
GAATGCTTCAATCTTTCCTC+TGG - chr5.1:71804787-71804806 MS.gene038090:intron 40.0%
GACAAATTCCCATTTCCACA+TGG - chr5.1:71804218-71804237 MS.gene038090:intron 40.0%
GAGGAGAGTAGATAAGATGA+TGG - chr5.1:71803591-71803610 MS.gene038090:CDS 40.0%
GCAACGAGTGTATTACATAC+AGG - chr5.1:71806863-71806882 MS.gene038090:intron 40.0%
GCTAATAATGACCTCAGTTC+TGG + chr5.1:71805167-71805186 None:intergenic 40.0%
GTAGTTGCTGAGACATCTTA+TGG - chr5.1:71806230-71806249 MS.gene038090:intron 40.0%
GTCAAACCAAACCATACCTT+TGG - chr5.1:71804195-71804214 MS.gene038090:intron 40.0%
GTGAAGGTGACTACTGAAAA+TGG - chr5.1:71806017-71806036 MS.gene038090:intron 40.0%
GTGGTATTTATGCAGAATGG+AGG - chr5.1:71805277-71805296 MS.gene038090:intron 40.0%
GTTATACATACCCTAGCCAA+GGG - chr5.1:71805848-71805867 MS.gene038090:intron 40.0%
TATCATTGCTGTACCTCTTG+GGG - chr5.1:71806064-71806083 MS.gene038090:intron 40.0%
TATGCGCTCTTTGATATGGA+GGG - chr5.1:71804875-71804894 MS.gene038090:intron 40.0%
TCAAATTCGTTGATGCAGGT+TGG - chr5.1:71805229-71805248 MS.gene038090:CDS 40.0%
TCACCGTCTGTTATTGTCAT+AGG - chr5.1:71803417-71803436 MS.gene038090:intron 40.0%
TCCTATAGTTATGACGCAGT+TGG - chr5.1:71806776-71806795 MS.gene038090:intron 40.0%
TCTTTCCAATCTGGAAGCTT+TGG + chr5.1:71806119-71806138 None:intergenic 40.0%
TGCATACTCTACTGGAACAA+TGG - chr5.1:71806898-71806917 MS.gene038090:intron 40.0%
TGTGTTCATATGTCACCATG+TGG + chr5.1:71804236-71804255 None:intergenic 40.0%
TGTTATACATACCCTAGCCA+AGG - chr5.1:71805847-71805866 MS.gene038090:intron 40.0%
TTACATACAGGGTCTGTTCA+TGG - chr5.1:71806875-71806894 MS.gene038090:intron 40.0%
TTCAGACCCTATCACTTTAG+AGG + chr5.1:71806498-71806517 None:intergenic 40.0%
TTGAAAGAAAGCCAGAACTG+AGG - chr5.1:71805153-71805172 MS.gene038090:intron 40.0%
TTGGCTAGGGTATGTATAAC+AGG + chr5.1:71805848-71805867 None:intergenic 40.0%
TTTCCTCTGGTCATCTTGAA+TGG - chr5.1:71804800-71804819 MS.gene038090:intron 40.0%
! ACAATGTGTGTCTTCGAGTT+TGG - chr5.1:71803849-71803868 MS.gene038090:CDS 40.0%
! ACACACATTGTGTATTGACG+TGG + chr5.1:71803840-71803859 None:intergenic 40.0%
! ATGAAGCATCATGAAGTGCA+CGG + chr5.1:71803470-71803489 None:intergenic 40.0%
! CAAGAGTTGGTTACAGAAGT+TGG - chr5.1:71804911-71804930 MS.gene038090:intron 40.0%
! TAAGAGGTTCAGAGTGGATT+TGG - chr5.1:71806470-71806489 MS.gene038090:CDS 40.0%
! TAGGGGATATAATGGAGTGA+AGG - chr5.1:71806001-71806020 MS.gene038090:intron 40.0%
! TCTAAAGTGATAGGGTCTGA+AGG - chr5.1:71806497-71806516 MS.gene038090:intron 40.0%
! TGTGTGTCTGTTATTTGCTG+TGG - chr5.1:71803902-71803921 MS.gene038090:intron 40.0%
! TTCTTGTTTACATGCCTGCT+GGG - chr5.1:71806297-71806316 MS.gene038090:intron 40.0%
! TTTGTCCCAAAGGTATGGTT+TGG + chr5.1:71804204-71804223 None:intergenic 40.0%
!! GTGTGTCTGTTATTTGCTGT+GGG - chr5.1:71803903-71803922 MS.gene038090:intron 40.0%
!!! AGATCTGGTTTTAGGATCGT+GGG - chr5.1:71802989-71803008 MS.gene038090:CDS 40.0%
!!! AGGTCGTTCTTTTAGAATCC+CGG - chr5.1:71804402-71804421 MS.gene038090:intron 40.0%
!!! TAGATCTGGTTTTAGGATCG+TGG - chr5.1:71802988-71803007 MS.gene038090:CDS 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG - chr5.1:71804461-71804480 MS.gene038090:intron 40.0%
AACCTCTCATACAGACCATG+CGG + chr5.1:71806806-71806825 None:intergenic 45.0%
AAGCTGCCATTGCTGATATC+GGG - chr5.1:71806138-71806157 MS.gene038090:intron 45.0%
AAGGTTTGTCTGGCATACGA+GGG + chr5.1:71803783-71803802 None:intergenic 45.0%
AATGTCAAGACCCTTGGCTA+GGG + chr5.1:71805861-71805880 None:intergenic 45.0%
ACCTCTTTACCGTACTTGTG+AGG - chr5.1:71804652-71804671 MS.gene038090:intron 45.0%
ACTAATCCCAATTCCCGCAA+AGG - chr5.1:71802862-71802881 MS.gene038090:CDS 45.0%
AGGGCGACAAAGATAGTTAG+GGG - chr5.1:71805984-71806003 MS.gene038090:intron 45.0%
AGTCGTATCACTAGAGGTAG+AGG - chr5.1:71803616-71803635 MS.gene038090:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG - chr5.1:71805328-71805347 MS.gene038090:intron 45.0%
ATGCGCTCTTTGATATGGAG+GGG - chr5.1:71804876-71804895 MS.gene038090:intron 45.0%
ATGGCAGCTTCTTTCCAATC+TGG + chr5.1:71806128-71806147 None:intergenic 45.0%
ATGGTCTGTATGAGAGGTTG+CGG - chr5.1:71806807-71806826 MS.gene038090:intron 45.0%
ATTTATGCAGAATGGAGGGC+TGG - chr5.1:71805282-71805301 MS.gene038090:intron 45.0%
CACGGTTTCTTCCAATTACC+TGG + chr5.1:71805349-71805368 None:intergenic 45.0%
CAGCTATGCGCTCTTTGATA+TGG - chr5.1:71804871-71804890 MS.gene038090:intron 45.0%
CAGGGCGACAAAGATAGTTA+GGG - chr5.1:71805983-71806002 MS.gene038090:intron 45.0%
CCACTTAGTGGGATAAGACT+GGG - chr5.1:71803741-71803760 MS.gene038090:CDS 45.0%
CCCAACTGCGTCATAACTAT+AGG + chr5.1:71806780-71806799 None:intergenic 45.0%
CCGCCTATGACAATAACAGA+CGG + chr5.1:71803423-71803442 None:intergenic 45.0%
CCGTCTGTTATTGTCATAGG+CGG - chr5.1:71803420-71803439 MS.gene038090:intron 45.0%
CGGGAATAGGGTTTGAAAAG+TGG - chr5.1:71803145-71803164 MS.gene038090:intron 45.0%
CTAGGGTATGTATAACAGGC+AGG + chr5.1:71805844-71805863 None:intergenic 45.0%
CTAGTTCCCCGTATCTTTCT+AGG + chr5.1:71806949-71806968 None:intergenic 45.0%
CTATGCGCTCTTTGATATGG+AGG - chr5.1:71804874-71804893 MS.gene038090:intron 45.0%
CTCACCCTTCTCTATATACC+TGG - chr5.1:71805768-71805787 MS.gene038090:intron 45.0%
CTTAATCTTCACAAAGCGGC+AGG - chr5.1:71806266-71806285 MS.gene038090:intron 45.0%
CTTATCCCACTAAGTGGGAT+CGG + chr5.1:71803738-71803757 None:intergenic 45.0%
GAAGCTGCCATTGCTGATAT+CGG - chr5.1:71806137-71806156 MS.gene038090:intron 45.0%
GAGCAATTCTTCCTGTAACC+AGG + chr5.1:71805789-71805808 None:intergenic 45.0%
GCAGACAGATAATGTACGAC+AGG - chr5.1:71805085-71805104 MS.gene038090:intron 45.0%
GCAGGCATGTAAACAAGAAC+AGG + chr5.1:71806296-71806315 None:intergenic 45.0%
GCTATCATTGCTGTACCTCT+TGG - chr5.1:71806062-71806081 MS.gene038090:intron 45.0%
GGGAATTTGTCCCAAAGGTA+TGG + chr5.1:71804209-71804228 None:intergenic 45.0%
GTTCATGGTGCATACTCTAC+TGG - chr5.1:71806890-71806909 MS.gene038090:intron 45.0%
TAGCCAAGGGTCTTGACATT+CGG - chr5.1:71805861-71805880 MS.gene038090:intron 45.0%
TCAGGGCGACAAAGATAGTT+AGG - chr5.1:71805982-71806001 MS.gene038090:intron 45.0%
TCCTCACAAGTACGGTAAAG+AGG + chr5.1:71804656-71804675 None:intergenic 45.0%
TCTGTTATTGTCATAGGCGG+TGG - chr5.1:71803423-71803442 MS.gene038090:intron 45.0%
TGCGTGTCCTAGAAAGATAC+GGG - chr5.1:71806939-71806958 MS.gene038090:intron 45.0%
TTACAGGAAGAATTGCTCCC+TGG - chr5.1:71805791-71805810 MS.gene038090:intron 45.0%
TTAGAATCCCGGGATAGACT+TGG - chr5.1:71804413-71804432 MS.gene038090:intron 45.0%
TTGAGCCAAAGCTTCCAGAT+TGG - chr5.1:71806111-71806130 MS.gene038090:intron 45.0%
TTTGCTTTCAGTACCCCAAG+AGG + chr5.1:71806080-71806099 None:intergenic 45.0%
! AATCCTCTGGCTCCATTGAT+TGG - chr5.1:71804617-71804636 MS.gene038090:intron 45.0%
! AATTCGTTGATGCAGGTTGG+AGG - chr5.1:71805232-71805251 MS.gene038090:CDS 45.0%
! AGTTACCGGTGAAGAAGCAT+CGG + chr5.1:71806402-71806421 None:intergenic 45.0%
! ATCCTCTGGCTCCATTGATT+GGG - chr5.1:71804618-71804637 MS.gene038090:intron 45.0%
! ATTCGTTGATGCAGGTTGGA+GGG - chr5.1:71805233-71805252 MS.gene038090:CDS 45.0%
! CCAGTCTTATCCCACTAAGT+GGG + chr5.1:71803743-71803762 None:intergenic 45.0%
! GTGGACTGAGGATTCATGTA+TGG - chr5.1:71805461-71805480 MS.gene038090:intron 45.0%
! GTTCTTGTTTACATGCCTGC+TGG - chr5.1:71806296-71806315 MS.gene038090:intron 45.0%
! TGAAGCATCATGAAGTGCAC+GGG + chr5.1:71803469-71803488 None:intergenic 45.0%
! TTTCACACAAGGTGCTTCAG+TGG - chr5.1:71805258-71805277 MS.gene038090:CDS 45.0%
!! TGGTCATGGTCTTATGGTCA+GGG - chr5.1:71805814-71805833 MS.gene038090:intron 45.0%
!!! ATTTTTTACGCGGTGGACTG+AGG - chr5.1:71805449-71805468 MS.gene038090:CDS 45.0%
!!! CAACGTATTTTGGCCCAATG+TGG - chr5.1:71806196-71806215 MS.gene038090:intron 45.0%
!!! GGTCGTTCTTTTAGAATCCC+GGG - chr5.1:71804403-71804422 MS.gene038090:intron 45.0%
AACCGCATGGTCTGTATGAG+AGG - chr5.1:71806801-71806820 MS.gene038090:intron 50.0%
AAGGGTCTTGACATTCGGCT+GGG - chr5.1:71805866-71805885 MS.gene038090:intron 50.0%
ACCATAAGACCATGACCACC+AGG + chr5.1:71805812-71805831 None:intergenic 50.0%
ACTAAGTGGGATCGGCTACA+TGG + chr5.1:71803730-71803749 None:intergenic 50.0%
ACTCCCAGGAACTCCACATT+GGG + chr5.1:71806212-71806231 None:intergenic 50.0%
ACTGAACCCTCTTCCAACTC+TGG + chr5.1:71806983-71807002 None:intergenic 50.0%
AGCTGCCATTGCTGATATCG+GGG - chr5.1:71806139-71806158 MS.gene038090:intron 50.0%
ATAACAGACGGTGACCTTCG+AGG + chr5.1:71803411-71803430 None:intergenic 50.0%
ATGTAGCCGATCCCACTTAG+TGG - chr5.1:71803729-71803748 MS.gene038090:CDS 50.0%
ATGTCTCAGCAACTACTCCC+AGG + chr5.1:71806226-71806245 None:intergenic 50.0%
ATGTTGATCAGCAGCCTCGA+AGG - chr5.1:71803394-71803413 MS.gene038090:intron 50.0%
ATTCCAGCCAGAGTTGGAAG+AGG - chr5.1:71806973-71806992 MS.gene038090:intron 50.0%
CATGATGCACCTAGGTCAAC+AGG + chr5.1:71804473-71804492 None:intergenic 50.0%
CCATAAGACCATGACCACCA+GGG + chr5.1:71805811-71805830 None:intergenic 50.0%
CCCACTTAGTGGGATAAGAC+TGG - chr5.1:71803740-71803759 MS.gene038090:CDS 50.0%
CTGTTGACCTAGGTGCATCA+TGG - chr5.1:71804471-71804490 MS.gene038090:intron 50.0%
GAAGGTTTGTCTGGCATACG+AGG + chr5.1:71803784-71803803 None:intergenic 50.0%
GAATGTCAAGACCCTTGGCT+AGG + chr5.1:71805862-71805881 None:intergenic 50.0%
GCGTGTCCTAGAAAGATACG+GGG - chr5.1:71806940-71806959 MS.gene038090:intron 50.0%
TACTCCCAGGAACTCCACAT+TGG + chr5.1:71806213-71806232 None:intergenic 50.0%
TACTGGAACAATGGCTGCTG+AGG - chr5.1:71806907-71806926 MS.gene038090:intron 50.0%
TATTGTCATAGGCGGTGGCA+TGG - chr5.1:71803428-71803447 MS.gene038090:intron 50.0%
TCAGTATCTCGTGTCTCGGT+GGG - chr5.1:71806730-71806749 MS.gene038090:intron 50.0%
TCCAACCCCGATATCAGCAA+TGG + chr5.1:71806147-71806166 None:intergenic 50.0%
TGATACTCACACGTCGACAC+TGG - chr5.1:71803559-71803578 MS.gene038090:CDS 50.0%
TGGTCTGTATGAGAGGTTGC+GGG - chr5.1:71806808-71806827 MS.gene038090:intron 50.0%
TGTAGCCGATCCCACTTAGT+GGG - chr5.1:71803730-71803749 MS.gene038090:CDS 50.0%
TTCAGTATCTCGTGTCTCGG+TGG - chr5.1:71806729-71806748 MS.gene038090:intron 50.0%
TTCCAGCCAGAGTTGGAAGA+GGG - chr5.1:71806974-71806993 MS.gene038090:intron 50.0%
TTCTGCCACCAAGTCTATCC+CGG + chr5.1:71804424-71804443 None:intergenic 50.0%
TTGTTTACATGCCTGCTGGG+CGG - chr5.1:71806300-71806319 MS.gene038090:intron 50.0%
! CCCAGTCTTATCCCACTAAG+TGG + chr5.1:71803744-71803763 None:intergenic 50.0%
! TTCGTTGATGCAGGTTGGAG+GGG - chr5.1:71805234-71805253 MS.gene038090:CDS 50.0%
!! GGTCATGGTCTTATGGTCAG+GGG - chr5.1:71805815-71805834 MS.gene038090:intron 50.0%
!! GTGGTCATGGTCTTATGGTC+AGG - chr5.1:71805813-71805832 MS.gene038090:intron 50.0%
!! GTTACCGGTGAAGAAGCATC+GGG + chr5.1:71806401-71806420 None:intergenic 50.0%
AACCCTCTTCCAACTCTGGC+TGG + chr5.1:71806979-71806998 None:intergenic 55.0%
AGGGTCTTGACATTCGGCTG+GGG - chr5.1:71805867-71805886 MS.gene038090:intron 55.0%
AGTCCCAGCCTCCCAATCAA+TGG + chr5.1:71804632-71804651 None:intergenic 55.0%
CAAGGGTCTTGACATTCGGC+TGG - chr5.1:71805865-71805884 MS.gene038090:intron 55.0%
CAGCCGAATGTCAAGACCCT+TGG + chr5.1:71805867-71805886 None:intergenic 55.0%
CAGGAAGAATTGCTCCCTGG+TGG - chr5.1:71805794-71805813 MS.gene038090:intron 55.0%
CAGTATCTCGTGTCTCGGTG+GGG - chr5.1:71806731-71806750 MS.gene038090:intron 55.0%
CCTTCCCGATGCTTCTTCAC+CGG - chr5.1:71806394-71806413 MS.gene038090:CDS 55.0%
CTCCCAATCAATGGAGCCAG+AGG + chr5.1:71804623-71804642 None:intergenic 55.0%
GAATCCCGGGATAGACTTGG+TGG - chr5.1:71804416-71804435 MS.gene038090:intron 55.0%
GAATTGCTCCCTGGTGGTCA+TGG - chr5.1:71805800-71805819 MS.gene038090:intron 55.0%
GCCATTGCTGATATCGGGGT+TGG - chr5.1:71806143-71806162 MS.gene038090:intron 55.0%
GTTGGAGGGGCTTTCACACA+AGG - chr5.1:71805247-71805266 MS.gene038090:CDS 55.0%
TCTGCCACCAAGTCTATCCC+GGG + chr5.1:71804423-71804442 None:intergenic 55.0%
TGGCCCAATGTGGAGTTCCT+GGG - chr5.1:71806206-71806225 MS.gene038090:intron 55.0%
TTGGCCCAATGTGGAGTTCC+TGG - chr5.1:71806205-71806224 MS.gene038090:intron 55.0%
! CCCTGGTGGTCATGGTCTTA+TGG - chr5.1:71805808-71805827 MS.gene038090:intron 55.0%
! CTCTGGCTCCATTGATTGGG+AGG - chr5.1:71804621-71804640 MS.gene038090:intron 55.0%
! GCTCCATTGATTGGGAGGCT+GGG - chr5.1:71804626-71804645 MS.gene038090:intron 55.0%
! GTGTCTTCGAGTTTGGCTCG+TGG - chr5.1:71803856-71803875 MS.gene038090:CDS 55.0%
CAATGGCTGCTGAGGACTGC+AGG - chr5.1:71806915-71806934 MS.gene038090:intron 60.0%
GACGCAGTTGGGAAACCGCA+TGG - chr5.1:71806788-71806807 MS.gene038090:intron 60.0%
TCATAGGCGGTGGCATGGCT+GGG - chr5.1:71803433-71803452 MS.gene038090:intron 60.0%
TTGACATTCGGCTGGGGCAC+AGG - chr5.1:71805873-71805892 MS.gene038090:intron 60.0%
! GGCTCCATTGATTGGGAGGC+TGG - chr5.1:71804625-71804644 MS.gene038090:intron 60.0%
!! CCGGTGAAGAAGCATCGGGA+AGG + chr5.1:71806397-71806416 None:intergenic 60.0%
GTCATAGGCGGTGGCATGGC+TGG - chr5.1:71803432-71803451 MS.gene038090:intron 65.0%
TTACATGCCTGCTGGGCGGC+TGG - chr5.1:71806304-71806323 MS.gene038090:intron 65.0%
TCTTTGGCCAGCCGCCCAGC+AGG + chr5.1:71806314-71806333 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 71802844 71807030 71802844 ID=MS.gene038090
chr5.1 mRNA 71802844 71807030 71802844 ID=MS.gene038090.t1;Parent=MS.gene038090
chr5.1 exon 71806991 71807030 71806991 ID=MS.gene038090.t1.exon1;Parent=MS.gene038090.t1
chr5.1 CDS 71806991 71807030 71806991 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71806380 71806495 71806380 ID=MS.gene038090.t1.exon2;Parent=MS.gene038090.t1
chr5.1 CDS 71806380 71806495 71806380 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71805382 71805470 71805382 ID=MS.gene038090.t1.exon3;Parent=MS.gene038090.t1
chr5.1 CDS 71805382 71805470 71805382 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71805166 71805279 71805166 ID=MS.gene038090.t1.exon4;Parent=MS.gene038090.t1
chr5.1 CDS 71805166 71805279 71805166 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71804913 71805000 71804913 ID=MS.gene038090.t1.exon5;Parent=MS.gene038090.t1
chr5.1 CDS 71804913 71805000 71804913 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71804700 71804785 71804700 ID=MS.gene038090.t1.exon6;Parent=MS.gene038090.t1
chr5.1 CDS 71804700 71804785 71804700 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71804525 71804627 71804525 ID=MS.gene038090.t1.exon7;Parent=MS.gene038090.t1
chr5.1 CDS 71804525 71804627 71804525 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71803980 71804077 71803980 ID=MS.gene038090.t1.exon8;Parent=MS.gene038090.t1
chr5.1 CDS 71803980 71804077 71803980 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71803459 71803888 71803459 ID=MS.gene038090.t1.exon9;Parent=MS.gene038090.t1
chr5.1 CDS 71803459 71803888 71803459 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
chr5.1 exon 71802844 71803146 71802844 ID=MS.gene038090.t1.exon10;Parent=MS.gene038090.t1
chr5.1 CDS 71802844 71803146 71802844 ID=cds.MS.gene038090.t1;Parent=MS.gene038090.t1
Gene Sequence

>MS.gene038090

ATGGAGTCACGAATTAAGACTAATCCCAATTCCCGCAAAGGTTCATTTTTTAACTATCCTCTTTTCATTTTTTATTTTGGTTTATAAATGTTTATGCTTTTTTTTTTTGTTCTGAATTTGGTAATAATTTATTTGATTAGATTATAGATCTGGTTTTAGGATCGTGGGCTTTAATTTCGCTATTTTTACTCCTAATTGATCAAATTTCCAATTTTTATGATCAGGATATTTTTTATACATTCCTAATTGATTAAATTTCTAATTTTTATGATCAGGGTATTTTTTATATATTGGTAAAAAACGGGAATAGGGTTTGAAAAGTGGAAAAAAAAGTGATAAATCATTTGGGTCGTTGTCATCATAGAATCTGATAAATGATGAATAATTCAAAGAGTTGTATTGGTTTGTTTCTAATAGAGATTTGATGTGTTTTTGTGTCTGATAATTGTGTTTTTTTTGACATGTTTTGGTTCTATTTATGCGTTTATGTTTGTTATTGACTTTGATTTTTATTGTTGTTGTACTGTCTATGTAGGTTTGTGCTATGTCAATGTTGATCAGCAGCCTCGAAGGTCACCGTCTGTTATTGTCATAGGCGGTGGCATGGCTGGGATTGCTGCTGCCCGTGCACTTCATGATGCTTCATTTCAGGTATTCAAGCAAATGATATAGCTGATAACTTTATTTTACTTACTATTCAGTTTGCCAAGAGTAATGATACTCACACGTCGACACTGGTAATAATTTGAGGAGAGTAGATAAGATGATGGATAGTCGTATCACTAGAGGTAGAGGAAGACCTAGATAAACTATGAGGGAAACTATTAAGAAAGATCTAAAGATTAATGTATTGGATCGAAATATAGTTTATGGCGTAATTTATCCATGTAGCCGATCCCACTTAGTGGGATAAGACTGGGTCGTTGTTGCTTGTGTCCCTCGTATGCCAGACAAACCTTCAATCTGAAGTGTCAGTGTTTTATAGATTACATGCCACGTCAATACACAATGTGTGTCTTCGAGTTTGGCTCGTGGCTATATGAATATGACTACAATTATGTGTGTCTGTTATTTGCTGTGGGTTGTTAGTTATGTCTACTAATTGAAGATTGAAGATGATTAAGAATTAAATGTCCTGTACATGTAACTTAAGTTTAATGCTAATTGCAATCTATTTCATTGGAAATATTTGCAACTCATTTATGATTGCGATTGTTGTATTTTGGTTCAATAGGTTATCTTAAAGTAAAAGTAGCTTGTTTAAAACCATTTTATGCTATCTTGGGTTATACAACTTCACTTGGTTGCTTTGTTAGAGTTTAAAATTGGATTTGACTGTTTTTGTACTTTAGTCAAACCAAACCATACCTTTGGGACAAATTCCCATTTCCACATGGTGACATATGAACACACATATATTTAGCTAATGAAGAGAGACACCATCTCCTTTAATTATTTTGTTTTTCCTCTTCTTCTCATTTAAACATTCGTACTTTTGTATCTATCAGCTCCTTTATTTGTATTGAGAGTTGTACTGAAGTTCATTACTTTTTTGTTCAGGTCGTTCTTTTAGAATCCCGGGATAGACTTGGTGGCAGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTAGGTGCATCATGGTAAAGATTATACTCTTTTTATTCTGATTTTTTCATGTTGACAAAAACGCAAGATTTCTTTCTTTTTTATTTTAGCATTGAAAGTGGCTGATTATGATTCAGGTTGCATGGAGTTTGCAATGAGAATCCTCTGGCTCCATTGATTGGGAGGCTGGGACTACCTCTTTACCGTACTTGTGAGGATAACTCTGTCCTATACGATCATGATTTGGAAAGGTAAATGCATTTTTTGTTATTATTTGGTAGTAGTTATCGATTTCTTCTGTGCTTTTGTAAGTAATTAACGACTACATTGAATGCTTCAATCTTTCCTCTGGTCATCTTGAATGGTATATTATTTGATATGGGATTCTTTGATTCAAAGTTGTCAACTTTTTACAGCTATGCGCTCTTTGATATGGAGGGGAATCAAGTTCCACAAGAGTTGGTTACAGAAGTTGGTAAAACATTTGAAATGATTTTGCAAGAGGTATGTCATTTGTTTATTTGCAAGAGTTAATTGAAATCGCAATTTTTTTTTAATTGAAATCGCAAATGTTTGAGTCAACTTGTTTACAATGAGCATCTCATCTAACAATTGACATTTATTAATGCAGACAGATAATGTACGACAGGAATTCAGCGAAGACATGTCCATTCTTCGTGCACTTTCAATTGTTTTTGAAAGAAAGCCAGAACTGAGGTCATTATTAGCATAAAACTCAAATTCGTTGACCACCATTCATTTTATCAAAACTCAAATTCGTTGATGCAGGTTGGAGGGGCTTTCACACAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGATTCTATATCACTGAAATGTTGGGACCAGGTAATTGGAAGAAACCGTGTTCAAGATGTTTGGGGTTCTATTATTTGTATTGTCTATTTCAAGTTTATGTCATTGAAATTTAAGTTGCATTACATAAATATTTTTTACGCGGTGGACTGAGGATTCATGTATGGTTTTTCCATTTCAGTTCTTTGTCCTTGTTGATCTTTTTTATTAGACACATTATTGAAGGACACAATTATTAAGTGGCAAGTTCTTATTTATACACTATTGGTTTGAGTTTTAGGTTAAATGTTAATGATATGCCATTTGTACCGGCTTTTATTGAGGATATTATAATATTTGATGTAAGGGATATAAAAATGAGATTAATAAGTGACTCCGTATGGTTTCATATACTCACATTATGTTGCGAGTAACTTGTAATCACTATGTGCATTAACATTTTGATGTGTAACTCACCCTTCTCTATATACCTGGTTACAGGAAGAATTGCTCCCTGGTGGTCATGGTCTTATGGTCAGGGGATACCTGCCTGTTATACATACCCTAGCCAAGGGTCTTGACATTCGGCTGGGGCACAGGTATATATTTGTTTGAAGTTTTGTTTTGGAAGTCTTTGTCCTGTTTTGTTGGTTTACCAAACTAACTGGCTTTGATGATACCTATTTTCAGGGCGACAAAGATAGTTAGGGGATATAATGGAGTGAAGGTGACTACTGAAAATGGGAAAACATTTGTTGCTGACGCTGCTATCATTGCTGTACCTCTTGGGGTACTGAAAGCAAATGTAATCAAATTTGAGCCAAAGCTTCCAGATTGGAAAGAAGCTGCCATTGCTGATATCGGGGTTGGAGTTGAGAATAAAATAATTTTACACTTCAACAACGTATTTTGGCCCAATGTGGAGTTCCTGGGAGTAGTTGCTGAGACATCTTATGGATGCAGCTACTTTCTTAATCTTCACAAAGCGGCAGGTCATCCTGTTCTTGTTTACATGCCTGCTGGGCGGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCTAACTTTGCTTTCACACAACTCAAGAAGATCCTTCCCGATGCTTCTTCACCGGTAACTATAATAGTTTTAAATATATTTAACTTGTTTTTTACAATGGAATAAAAGTAAGAGGTTCAGAGTGGATTTGGTTCCTCTAAAGTGATAGGGTCTGAAGGGTGCATTTTAGAAGATAAAGTGTGGGATTGAAACTAATTGATTAGAAAAATTATCACTTGCATTTTACTTTCTAATGTGTACTGTCTAGTTTAGAGGAGTGAAATCTCTTGAACCATGTTTTGTAGGCTACAGAATCTTTAAAATTGAATCCATTTATGTTTCTGTGCATAGCTATATGGCTGAATTGAGTTTGTTTCCTTTATGCAGATTCAGTATCTCGTGTCTCGGTGGGGTACAGATATTAATTCACTAGGTTCCTATAGTTATGACGCAGTTGGGAAACCGCATGGTCTGTATGAGAGGTTGCGGGTTCCTGTAGATAACTTATTCTTTGCAGGGGAAGCAACGAGTGTATTACATACAGGGTCTGTTCATGGTGCATACTCTACTGGAACAATGGCTGCTGAGGACTGCAGGATGCGTGTCCTAGAAAGATACGGGGAACTAGATATATTCCAGCCAGAGTTGGAAGAGGGTTCAGTCATTCCACTTCTGATATCTCGTATTTGA

Protein sequence

>MS.gene038090.t1

MESRIKTNPNSRKGLCYVNVDQQPRRSPSVIVIGGGMAGIAAARALHDASFQVVLLESRDRLGGRIHTDYSFGFPVDLGASWLHGVCNENPLAPLIGRLGLPLYRTCEDNSVLYDHDLESYALFDMEGNQVPQELVTEVGKTFEMILQETDNVRQEFSEDMSILRALSIVFERKPELRLEGLSHKVLQWYLCRMEGWFAADSDSISLKCWDQEELLPGGHGLMVRGYLPVIHTLAKGLDIRLGHRATKIVRGYNGVKVTTENGKTFVADAAIIAVPLGVLKANVIKFEPKLPDWKEAAIADIGVGVENKIILHFNNVFWPNVEFLGVVAETSYGCSYFLNLHKAAGHPVLVYMPAGRLAKDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSRWGTDINSLGSYSYDAVGKPHGLYERLRVPVDNLFFAGEATSVLHTGSVHGAYSTGTMAAEDCRMRVLERYGELDIFQPELEEGSVIPLLISRI