Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47679.t1 | XP_003617318.1 | 99 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 9.00E-285 | 988.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47679.t1 | Q9SKX5 | 78.8 | 490 | 102 | 2 | 1 | 488 | 1 | 490 | 1.7e-231 | 803.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47679.t1 | G7KD02 | 99.0 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 6.5e-285 | 988.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene47679 | MS.gene92026 | PPI |
MS.gene47679 | MS.gene017025 | PPI |
MS.gene47679 | MS.gene008352 | PPI |
MS.gene47679 | MS.gene038090 | PPI |
MS.gene47679 | MS.gene46961 | PPI |
MS.gene47679 | MS.gene049679 | PPI |
MS.gene019144 | MS.gene47679 | PPI |
MS.gene061581 | MS.gene47679 | PPI |
MS.gene46961 | MS.gene47679 | PPI |
MS.gene47679 | MS.gene46317 | PPI |
MS.gene05030 | MS.gene47679 | PPI |
MS.gene46317 | MS.gene47679 | PPI |
MS.gene22232 | MS.gene47679 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47679.t1 | MTR_5g090300 | 98.975 | 488 | 5 | 0 | 1 | 488 | 1 | 488 | 0.0 | 999 |
MS.gene47679.t1 | MTR_3g449620 | 83.469 | 490 | 79 | 1 | 1 | 488 | 1 | 490 | 0.0 | 818 |
MS.gene47679.t1 | MTR_3g064370 | 64.634 | 492 | 170 | 1 | 1 | 488 | 1 | 492 | 0.0 | 658 |
MS.gene47679.t1 | MTR_3g064370 | 65.060 | 415 | 141 | 1 | 78 | 488 | 1 | 415 | 0.0 | 563 |
MS.gene47679.t1 | MTR_3g064370 | 67.609 | 389 | 126 | 0 | 1 | 389 | 1 | 389 | 0.0 | 555 |
MS.gene47679.t1 | MTR_1g023510 | 34.737 | 475 | 260 | 12 | 30 | 454 | 867 | 1341 | 4.59e-67 | 234 |
MS.gene47679.t1 | MTR_3g113170 | 34.298 | 484 | 273 | 12 | 30 | 476 | 883 | 1358 | 7.44e-67 | 234 |
MS.gene47679.t1 | MTR_3g113170 | 34.298 | 484 | 273 | 12 | 30 | 476 | 883 | 1358 | 9.63e-67 | 233 |
MS.gene47679.t1 | MTR_5g087920 | 76.000 | 125 | 30 | 0 | 280 | 404 | 12 | 136 | 6.29e-60 | 193 |
MS.gene47679.t1 | MTR_6g084700 | 34.904 | 467 | 261 | 15 | 29 | 467 | 221 | 672 | 3.89e-55 | 197 |
MS.gene47679.t1 | MTR_3g055090 | 32.373 | 451 | 259 | 13 | 29 | 454 | 160 | 589 | 1.74e-53 | 192 |
MS.gene47679.t1 | MTR_8g464450 | 31.938 | 454 | 257 | 15 | 29 | 454 | 163 | 592 | 1.92e-42 | 161 |
MS.gene47679.t1 | MTR_1g050535 | 30.716 | 433 | 266 | 12 | 44 | 456 | 225 | 643 | 2.46e-41 | 158 |
MS.gene47679.t1 | MTR_1g050535 | 30.716 | 433 | 266 | 12 | 44 | 456 | 225 | 643 | 3.04e-41 | 158 |
MS.gene47679.t1 | MTR_2g039160 | 26.715 | 554 | 287 | 18 | 26 | 472 | 4 | 545 | 2.63e-33 | 132 |
MS.gene47679.t1 | MTR_3g033000 | 28.009 | 432 | 265 | 15 | 53 | 458 | 33 | 444 | 1.39e-30 | 124 |
MS.gene47679.t1 | MTR_3g033000 | 27.586 | 377 | 231 | 14 | 53 | 407 | 33 | 389 | 8.73e-23 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47679.t1 | AT2G43020 | 78.776 | 490 | 102 | 2 | 1 | 488 | 1 | 490 | 0.0 | 788 |
MS.gene47679.t1 | AT3G59050 | 78.367 | 490 | 102 | 3 | 1 | 488 | 1 | 488 | 0.0 | 781 |
MS.gene47679.t1 | AT1G65840 | 62.474 | 477 | 171 | 2 | 20 | 488 | 21 | 497 | 0.0 | 630 |
MS.gene47679.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene47679.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene47679.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene47679.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene47679.t1 | AT4G16310 | 34.280 | 493 | 242 | 15 | 30 | 454 | 620 | 1098 | 1.19e-64 | 227 |
MS.gene47679.t1 | AT1G62830 | 34.475 | 467 | 271 | 14 | 28 | 473 | 266 | 718 | 1.27e-54 | 196 |
MS.gene47679.t1 | AT3G10390 | 32.700 | 474 | 264 | 15 | 14 | 456 | 169 | 618 | 5.24e-50 | 183 |
MS.gene47679.t1 | AT3G10390 | 33.333 | 474 | 261 | 16 | 14 | 456 | 169 | 618 | 1.01e-49 | 182 |
MS.gene47679.t1 | AT3G13682 | 33.966 | 474 | 254 | 14 | 17 | 454 | 140 | 590 | 1.09e-49 | 181 |
MS.gene47679.t1 | AT3G10390 | 32.700 | 474 | 264 | 15 | 14 | 456 | 221 | 670 | 1.39e-49 | 182 |
MS.gene47679.t1 | AT3G10390 | 33.333 | 474 | 261 | 16 | 14 | 456 | 221 | 670 | 1.47e-49 | 182 |
MS.gene47679.t1 | AT5G13700 | 28.125 | 448 | 263 | 15 | 53 | 475 | 30 | 443 | 2.54e-34 | 134 |
MS.gene47679.t1 | AT4G29720 | 23.766 | 547 | 290 | 13 | 26 | 465 | 3 | 529 | 3.10e-34 | 135 |
Find 154 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACACTTCAACAACGTATTT+TGG | 0.147701 | 5.3:-72803775 | MS.gene47679:CDS |
AAATGAACCTTTGCGGGAAT+TGG | 0.219044 | 5.3:+72807094 | None:intergenic |
CTAGTTCCCCGTATCTTTCT+AGG | 0.225042 | 5.3:+72803015 | None:intergenic |
CCCTGGTGGTCATGGTCTTA+TGG | 0.250033 | 5.3:-72804153 | MS.gene47679:CDS |
GTAGATAACTTATTCTTTGC+AGG | 0.258142 | 5.3:-72803125 | MS.gene47679:CDS |
ACTTCATGATGCTTCATTTC+AGG | 0.276706 | 5.3:-72806488 | MS.gene47679:intron |
TTGGCCCAATGTGGAGTTCC+TGG | 0.277098 | 5.3:-72803756 | MS.gene47679:CDS |
GGCTCCATTGATTGGGAGGC+TGG | 0.279036 | 5.3:-72805336 | MS.gene47679:CDS |
GTCATAGGCGGTGGCATGGC+TGG | 0.307377 | 5.3:-72806529 | MS.gene47679:CDS |
CTATCATTGCTGTACCTCTT+GGG | 0.307858 | 5.3:-72803898 | MS.gene47679:CDS |
TCAGGGCGACAAAGATAGTT+AGG | 0.311809 | 5.3:-72803979 | MS.gene47679:intron |
TCTTTCCAATCTGGAAGCTT+TGG | 0.318953 | 5.3:+72803845 | None:intergenic |
CAGCTATGCGCTCTTCGATA+TGG | 0.322933 | 5.3:-72805090 | MS.gene47679:CDS |
GCTAATAATGACCTCAGTTC+TGG | 0.323376 | 5.3:+72804797 | None:intergenic |
ATTCACACTGATTACTCATT+TGG | 0.325638 | 5.3:-72805518 | MS.gene47679:CDS |
GCTATCATTGCTGTACCTCT+TGG | 0.347891 | 5.3:-72803899 | MS.gene47679:CDS |
AATCCTCTGGCTCCATTGAT+TGG | 0.348932 | 5.3:-72805344 | MS.gene47679:CDS |
GAAGCTGCCATTGCTGATAT+CGG | 0.349601 | 5.3:-72803824 | MS.gene47679:CDS |
GTGAAGGTGACTACTGAAAA+TGG | 0.357159 | 5.3:-72803944 | MS.gene47679:CDS |
AAGATAGTTAGGGGATATAA+TGG | 0.370197 | 5.3:-72803968 | MS.gene47679:CDS |
GTTCTTGTTTACATGCCTGC+TGG | 0.371256 | 5.3:-72803665 | MS.gene47679:CDS |
TTACATGCCTGCTGGGCGGC+TGG | 0.383621 | 5.3:-72803657 | MS.gene47679:CDS |
ATGGCAGCTTCTTTCCAATC+TGG | 0.384672 | 5.3:+72803836 | None:intergenic |
ATTCTATATCACTGAAATGT+TGG | 0.387439 | 5.3:-72804640 | MS.gene47679:CDS |
GTGGTCATGGTCTTATGGTC+AGG | 0.387478 | 5.3:-72804148 | MS.gene47679:CDS |
AATGAACCTTTGCGGGAATT+GGG | 0.395567 | 5.3:+72807095 | None:intergenic |
TGTCCTATACGATCATGATT+TGG | 0.402825 | 5.3:-72805279 | MS.gene47679:CDS |
TTGGCTAGGGTATGTATAAC+AGG | 0.405023 | 5.3:+72804116 | None:intergenic |
GTAGTTGCTGAGACATCTTA+TGG | 0.410548 | 5.3:-72803731 | MS.gene47679:CDS |
TCACCGTCTGTTATTGTCAT+AGG | 0.417890 | 5.3:-72806544 | MS.gene47679:CDS |
TCTTTGGCCAGCCGCCCAGC+AGG | 0.424805 | 5.3:+72803650 | None:intergenic |
CAAGGGTCTTGACATTCGGC+TGG | 0.431094 | 5.3:-72804096 | MS.gene47679:CDS |
ATCCTCTGGCTCCATTGATT+GGG | 0.431803 | 5.3:-72805343 | MS.gene47679:CDS |
TTGAGCCAAAGCTTCCAGAT+TGG | 0.433940 | 5.3:-72803850 | MS.gene47679:CDS |
AATTGAAAGTGCACGAAGAA+TGG | 0.438137 | 5.3:+72804835 | None:intergenic |
CCTATAGTTATGACGCAGTT+GGG | 0.440336 | 5.3:-72803184 | MS.gene47679:CDS |
AAGCTGCCATTGCTGATATC+GGG | 0.442969 | 5.3:-72803823 | MS.gene47679:CDS |
GAATTGCTCCCTGGTGGTCA+TGG | 0.446683 | 5.3:-72804161 | MS.gene47679:CDS |
TTTCCAAATCATGATCGTAT+AGG | 0.448434 | 5.3:+72805276 | None:intergenic |
CATGATGCACCTAGGTCAAC+AGG | 0.448585 | 5.3:+72805491 | None:intergenic |
TTCTATATCACTGAAATGTT+GGG | 0.449054 | 5.3:-72804639 | MS.gene47679:CDS |
TTCTTGTTTACATGCCTGCT+GGG | 0.453430 | 5.3:-72803664 | MS.gene47679:CDS |
CAAGAGTTGGTTACAGAAGT+TGG | 0.457743 | 5.3:-72805050 | MS.gene47679:CDS |
CAGGGCGACAAAGATAGTTA+GGG | 0.457896 | 5.3:-72803978 | MS.gene47679:CDS |
TGGCCCAATGTGGAGTTCCT+GGG | 0.459578 | 5.3:-72803755 | MS.gene47679:CDS |
GCTCCATTGATTGGGAGGCT+GGG | 0.462828 | 5.3:-72805335 | MS.gene47679:CDS |
TTGACATTCGGCTGGGGCAC+AGG | 0.462919 | 5.3:-72804088 | MS.gene47679:intron |
GCAGGCATGTAAACAAGAAC+AGG | 0.463011 | 5.3:+72803668 | None:intergenic |
AACCCTCTTCCAACTCTGGC+TGG | 0.467559 | 5.3:+72802985 | None:intergenic |
TTACATACAGGGTCTGTTCA+TGG | 0.475124 | 5.3:-72803086 | MS.gene47679:CDS |
TCAGTATCTCGTGTCTCGGT+GGG | 0.475314 | 5.3:-72803231 | MS.gene47679:CDS |
CCCAACTGCGTCATAACTAT+AGG | 0.475903 | 5.3:+72803184 | None:intergenic |
GCAAAGAATAAGTTATCTAC+AGG | 0.484780 | 5.3:+72803128 | None:intergenic |
CAATGGCTGCTGAGGACTGC+AGG | 0.485843 | 5.3:-72803046 | MS.gene47679:CDS |
GTTCATGGTGCATACTCTAC+TGG | 0.488310 | 5.3:-72803071 | MS.gene47679:CDS |
GCAACGAGTGTATTACATAC+AGG | 0.492456 | 5.3:-72803098 | MS.gene47679:CDS |
TTCTGCCACCAAGTCTATCC+CGG | 0.493984 | 5.3:+72805540 | None:intergenic |
AGTCCCAGCCTCCCAATCAA+TGG | 0.497011 | 5.3:+72805332 | None:intergenic |
TGGTCATGGTCTTATGGTCA+GGG | 0.502310 | 5.3:-72804147 | MS.gene47679:CDS |
TAGATAACTTATTCTTTGCA+GGG | 0.507097 | 5.3:-72803124 | MS.gene47679:CDS |
GCCATTGCTGATATCGGGGT+TGG | 0.507133 | 5.3:-72803818 | MS.gene47679:CDS |
TTCGTTGATGCAGGTTGGAG+GGG | 0.509332 | 5.3:-72804727 | MS.gene47679:intron |
CTGTTGACCTAGGTGCATCA+TGG | 0.509864 | 5.3:-72805490 | MS.gene47679:intron |
CTTAATCTTCACAAAGCGGC+AGG | 0.511464 | 5.3:-72803695 | MS.gene47679:CDS |
TAGCCAAGGGTCTTGACATT+CGG | 0.512251 | 5.3:-72804100 | MS.gene47679:CDS |
CTCTGGCTCCATTGATTGGG+AGG | 0.513671 | 5.3:-72805340 | MS.gene47679:CDS |
TCAGTGGTATTTATGCAGAA+TGG | 0.515557 | 5.3:-72804687 | MS.gene47679:CDS |
TGCGTGTCCTAGAAAGATAC+GGG | 0.517425 | 5.3:-72803022 | MS.gene47679:CDS |
TCCTATAGTTATGACGCAGT+TGG | 0.517976 | 5.3:-72803185 | MS.gene47679:CDS |
TCATAGGCGGTGGCATGGCT+GGG | 0.518133 | 5.3:-72806528 | MS.gene47679:CDS |
ACTGAACCCTCTTCCAACTC+TGG | 0.519154 | 5.3:+72802981 | None:intergenic |
ACCATAAGACCATGACCACC+AGG | 0.519331 | 5.3:+72804152 | None:intergenic |
TGGTCTGTATGAGAGGTTGC+GGG | 0.523316 | 5.3:-72803153 | MS.gene47679:CDS |
CAGCCGAATGTCAAGACCCT+TGG | 0.525666 | 5.3:+72804097 | None:intergenic |
ATGCGTGTCCTAGAAAGATA+CGG | 0.527553 | 5.3:-72803023 | MS.gene47679:CDS |
ACTCCCAGGAACTCCACATT+GGG | 0.528892 | 5.3:+72803752 | None:intergenic |
TCTGTTATTGTCATAGGCGG+TGG | 0.531300 | 5.3:-72806538 | MS.gene47679:CDS |
ATGGTCTGTATGAGAGGTTG+CGG | 0.532017 | 5.3:-72803154 | MS.gene47679:CDS |
ATTCGTTGATGCAGGTTGGA+GGG | 0.533554 | 5.3:-72804728 | MS.gene47679:intron |
CAAATACGAGATATCAGAAG+TGG | 0.533727 | 5.3:+72802954 | None:intergenic |
CCTTCCCGATGCTTCTTCAC+CGG | 0.535712 | 5.3:-72803567 | MS.gene47679:intron |
GAATCAAGTTCCACAAGAGT+TGG | 0.536968 | 5.3:-72805063 | MS.gene47679:CDS |
TGAAGGTGACTACTGAAAAT+GGG | 0.540274 | 5.3:-72803943 | MS.gene47679:CDS |
AAGGGTCTTGACATTCGGCT+GGG | 0.542089 | 5.3:-72804095 | MS.gene47679:CDS |
ATAACAGACGGTGACCTTCG+AGG | 0.542275 | 5.3:+72806553 | None:intergenic |
AATTCGTTGATGCAGGTTGG+AGG | 0.542488 | 5.3:-72804729 | MS.gene47679:intron |
ATTTATGCAGAATGGAGGGC+TGG | 0.545277 | 5.3:-72804679 | MS.gene47679:CDS |
AGATATATTCCAGCCAGAGT+TGG | 0.546397 | 5.3:-72802994 | MS.gene47679:CDS |
TTAGAATCCCGGGATAGACT+TGG | 0.547928 | 5.3:-72805548 | MS.gene47679:CDS |
AGGGTCTTGACATTCGGCTG+GGG | 0.550051 | 5.3:-72804094 | MS.gene47679:CDS |
TACTGGAACAATGGCTGCTG+AGG | 0.550086 | 5.3:-72803054 | MS.gene47679:CDS |
CTATGCGCTCTTCGATATGG+AGG | 0.552749 | 5.3:-72805087 | MS.gene47679:CDS |
TTCAGTATCTCGTGTCTCGG+TGG | 0.557308 | 5.3:-72803232 | MS.gene47679:CDS |
TGCATACTCTACTGGAACAA+TGG | 0.558563 | 5.3:-72803063 | MS.gene47679:CDS |
GAATGTCAAGACCCTTGGCT+AGG | 0.558837 | 5.3:+72804102 | None:intergenic |
GAATCCCGGGATAGACTTGG+TGG | 0.558858 | 5.3:-72805545 | MS.gene47679:CDS |
GTTGGAGGGGCTTTCACACA+AGG | 0.559617 | 5.3:-72804714 | MS.gene47679:CDS |
AGTTACCGGTGAAGAAGCAT+CGG | 0.560061 | 5.3:+72803562 | None:intergenic |
TACTCCCAGGAACTCCACAT+TGG | 0.560675 | 5.3:+72803751 | None:intergenic |
GCAGACAGATAATGTACGAC+AGG | 0.565366 | 5.3:-72804876 | MS.gene47679:intron |
CAGAGTTATCCTCACAAGTA+CGG | 0.566480 | 5.3:+72805300 | None:intergenic |
TCCTCACAAGTACGGTAAAG+AGG | 0.571437 | 5.3:+72805308 | None:intergenic |
AATGTCAAGACCCTTGGCTA+GGG | 0.571742 | 5.3:+72804103 | None:intergenic |
TTTCACACAAGGTGCTTCAG+TGG | 0.575044 | 5.3:-72804703 | MS.gene47679:CDS |
TAGGGGATATAATGGAGTGA+AGG | 0.576412 | 5.3:-72803960 | MS.gene47679:CDS |
TGAAGCATCATGAAGTGCAC+GGG | 0.579978 | 5.3:+72806495 | None:intergenic |
ATTCCAGCCAGAGTTGGAAG+AGG | 0.581520 | 5.3:-72802988 | MS.gene47679:CDS |
AACCGCATGGTCTGTATGAG+AGG | 0.584210 | 5.3:-72803160 | MS.gene47679:CDS |
CTAGGGTATGTATAACAGGC+AGG | 0.584240 | 5.3:+72804120 | None:intergenic |
ATGTCTCAGCAACTACTCCC+AGG | 0.584539 | 5.3:+72803738 | None:intergenic |
ACCTCTTTACCGTACTTGTG+AGG | 0.587430 | 5.3:-72805309 | MS.gene47679:CDS |
GTGGTATTTATGCAGAATGG+AGG | 0.590217 | 5.3:-72804684 | MS.gene47679:CDS |
ATGAAGCATCATGAAGTGCA+CGG | 0.590616 | 5.3:+72806494 | None:intergenic |
ATCACTGAAATGTTGGGACC+AGG | 0.592003 | 5.3:-72804633 | MS.gene47679:intron |
GACGCAGTTGGGAAACCGCA+TGG | 0.594696 | 5.3:-72803173 | MS.gene47679:CDS |
ATGTTGATCAGCAGCCTCGA+AGG | 0.595305 | 5.3:-72806567 | MS.gene47679:CDS |
TCTGCCACCAAGTCTATCCC+GGG | 0.596007 | 5.3:+72805541 | None:intergenic |
AGGGCGACAAAGATAGTTAG+GGG | 0.596239 | 5.3:-72803977 | MS.gene47679:CDS |
TGTTATACATACCCTAGCCA+AGG | 0.597299 | 5.3:-72804114 | MS.gene47679:CDS |
ACTAATCCCAATTCCCGCAA+AGG | 0.600311 | 5.3:-72807101 | MS.gene47679:intron |
TATACGATCATGATTTGGAA+AGG | 0.602711 | 5.3:-72805274 | MS.gene47679:intron |
GTTACCGGTGAAGAAGCATC+GGG | 0.603982 | 5.3:+72803563 | None:intergenic |
CTCCCAATCAATGGAGCCAG+AGG | 0.605374 | 5.3:+72805341 | None:intergenic |
TATCATTGCTGTACCTCTTG+GGG | 0.605759 | 5.3:-72803897 | MS.gene47679:CDS |
GGTACAGATATTAATTCACT+AGG | 0.607199 | 5.3:-72803209 | MS.gene47679:CDS |
CAACGAGTGTATTACATACA+GGG | 0.607621 | 5.3:-72803097 | MS.gene47679:CDS |
TTACAGGAAGAATTGCTCCC+TGG | 0.609122 | 5.3:-72804170 | MS.gene47679:intron |
AGATTCAGTATCTCGTGTCT+CGG | 0.611152 | 5.3:-72803235 | MS.gene47679:CDS |
TGATTATGATTCAGGTTGCA+TGG | 0.611159 | 5.3:-72805380 | MS.gene47679:intron |
TATGCGCTCTTCGATATGGA+GGG | 0.614704 | 5.3:-72805086 | MS.gene47679:CDS |
TTCCAGCCAGAGTTGGAAGA+GGG | 0.614724 | 5.3:-72802987 | MS.gene47679:CDS |
AGTTTGCAATGAGAATCCTC+TGG | 0.615479 | 5.3:-72805357 | MS.gene47679:CDS |
TGGTATTTATGCAGAATGGA+GGG | 0.621034 | 5.3:-72804683 | MS.gene47679:CDS |
TATTGTCATAGGCGGTGGCA+TGG | 0.626229 | 5.3:-72806533 | MS.gene47679:CDS |
TCCAACCCCGATATCAGCAA+TGG | 0.632597 | 5.3:+72803817 | None:intergenic |
GGTCATGGTCTTATGGTCAG+GGG | 0.639940 | 5.3:-72804146 | MS.gene47679:CDS |
AGCTGCCATTGCTGATATCG+GGG | 0.641150 | 5.3:-72803822 | MS.gene47679:CDS |
CCGTCTGTTATTGTCATAGG+CGG | 0.645271 | 5.3:-72806541 | MS.gene47679:CDS |
ACTTCTGTAACCAACTCTTG+TGG | 0.651673 | 5.3:+72805053 | None:intergenic |
CCGGTGAAGAAGCATCGGGA+AGG | 0.655055 | 5.3:+72803567 | None:intergenic |
ATCTTTACCATGATGCACCT+AGG | 0.655995 | 5.3:+72805483 | None:intergenic |
CAGTATCTCGTGTCTCGGTG+GGG | 0.656943 | 5.3:-72803230 | MS.gene47679:CDS |
TTGAAAGAAAGCCAGAACTG+AGG | 0.657435 | 5.3:-72804808 | MS.gene47679:intron |
TTTGCTTTCAGTACCCCAAG+AGG | 0.665152 | 5.3:+72803884 | None:intergenic |
CTTTCTTAATCTTCACAAAG+CGG | 0.672988 | 5.3:-72803699 | MS.gene47679:CDS |
CAGGAAGAATTGCTCCCTGG+TGG | 0.673379 | 5.3:-72804167 | MS.gene47679:CDS |
ATGCGCTCTTCGATATGGAG+GGG | 0.676953 | 5.3:-72805085 | MS.gene47679:CDS |
GTTATACATACCCTAGCCAA+GGG | 0.684397 | 5.3:-72804113 | MS.gene47679:CDS |
AGATAACTTATTCTTTGCAG+GGG | 0.691736 | 5.3:-72803123 | MS.gene47679:CDS |
CCATAAGACCATGACCACCA+GGG | 0.693042 | 5.3:+72804153 | None:intergenic |
CCGCCTATGACAATAACAGA+CGG | 0.695318 | 5.3:+72806541 | None:intergenic |
TTGTTTACATGCCTGCTGGG+CGG | 0.710778 | 5.3:-72803661 | MS.gene47679:CDS |
AACCTCTCATACAGACCATG+CGG | 0.717356 | 5.3:+72803158 | None:intergenic |
GCGTGTCCTAGAAAGATACG+GGG | 0.777230 | 5.3:-72803021 | MS.gene47679:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGAAATTTAATCAATT+AGG | + | chr5.3:72803197-72803216 | None:intergenic | 10.0% |
!! | ATATTATAATATTTGATGTA+AGG | - | chr5.3:72805752-72805771 | MS.gene47679:intron | 10.0% |
!! | TATTATAATATTTGATGTAA+GGG | - | chr5.3:72805753-72805772 | MS.gene47679:intron | 10.0% |
!!! | TTTTATATATTGGTAAAAAA+CGG | - | chr5.3:72803234-72803253 | MS.gene47679:CDS | 10.0% |
!! | AAAAAAAGTGATAAATCATT+TGG | - | chr5.3:72803280-72803299 | MS.gene47679:intron | 15.0% |
!! | AAAAAAGTGATAAATCATTT+GGG | - | chr5.3:72803281-72803300 | MS.gene47679:intron | 15.0% |
!! | AATGGTATATTATTTGATAT+GGG | - | chr5.3:72804929-72804948 | MS.gene47679:intron | 15.0% |
!! | AGGAAAAACAAAATAATTAA+AGG | + | chr5.3:72804403-72804422 | None:intergenic | 15.0% |
!! | TTTATATATTGGTAAAAAAC+GGG | - | chr5.3:72803235-72803254 | MS.gene47679:CDS | 15.0% |
!!! | AATTTCTAATTTTTATGATC+AGG | - | chr5.3:72803206-72803225 | MS.gene47679:CDS | 15.0% |
!!! | ATGCATTTTTTGTTATTATT+TGG | - | chr5.3:72804824-72804843 | MS.gene47679:CDS | 15.0% |
!!! | ATTTAACTTGTTTTTTACAA+TGG | - | chr5.3:72806550-72806569 | MS.gene47679:CDS | 15.0% |
!!! | ATTTCTAATTTTTATGATCA+GGG | - | chr5.3:72803207-72803226 | MS.gene47679:CDS | 15.0% |
!!! | TTACATAAATATTTTTTACG+CGG | - | chr5.3:72805550-72805569 | MS.gene47679:CDS | 15.0% |
!!! | TTTAAAACTATTATAGTTAC+CGG | + | chr5.3:72806527-72806546 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTGTTCTGAATT+TGG | - | chr5.3:72803051-72803070 | MS.gene47679:CDS | 15.0% |
!! | AACAAAATAATTAAAGGAGA+TGG | + | chr5.3:72804397-72804416 | None:intergenic | 20.0% |
!! | AATAATTCAAAGAGTTGTAT+TGG | - | chr5.3:72803335-72803354 | MS.gene47679:intron | 20.0% |
!! | AATATCCTGATCATAAAAAT+TGG | + | chr5.3:72803163-72803182 | None:intergenic | 20.0% |
!! | AATTGGAAATTTGATCAATT+AGG | + | chr5.3:72803146-72803165 | None:intergenic | 20.0% |
!! | AGATCTAAAGATTAATGTAT+TGG | - | chr5.3:72803786-72803805 | MS.gene47679:CDS | 20.0% |
!! | ATTTGATTAGATTATAGATC+TGG | - | chr5.3:72803083-72803102 | MS.gene47679:CDS | 20.0% |
!! | CCAAAATAAAAAATGAAAAG+AGG | + | chr5.3:72803013-72803032 | None:intergenic | 20.0% |
!! | GAATGGTATATTATTTGATA+TGG | - | chr5.3:72804928-72804947 | MS.gene47679:intron | 20.0% |
!! | TCTAATAAAAAAGATCAACA+AGG | + | chr5.3:72805620-72805639 | None:intergenic | 20.0% |
!! | TTTATTAGACACATTATTGA+AGG | - | chr5.3:72805631-72805650 | MS.gene47679:intron | 20.0% |
!!! | AATTTCCAATTTTTATGATC+AGG | - | chr5.3:72803155-72803174 | MS.gene47679:CDS | 20.0% |
!!! | AGTTCTTATTTATACACTAT+TGG | - | chr5.3:72805673-72805692 | MS.gene47679:intron | 20.0% |
!!! | ATTTGTTTGAAGTTTTGTTT+TGG | - | chr5.3:72806012-72806031 | MS.gene47679:intron | 20.0% |
!!! | CCTCTTTTCATTTTTTATTT+TGG | - | chr5.3:72803010-72803029 | MS.gene47679:CDS | 20.0% |
!!! | TCAGGGTATTTTTTATATAT+TGG | - | chr5.3:72803224-72803243 | MS.gene47679:CDS | 20.0% |
!!! | TTGAGTTTTGATAAAATGAA+TGG | + | chr5.3:72805324-72805343 | None:intergenic | 20.0% |
!!! | TTTTATTTTAGCATTGAAAG+TGG | - | chr5.3:72804668-72804687 | MS.gene47679:CDS | 20.0% |
! | AATGTTTAAATGAGAAGAAG+AGG | + | chr5.3:72804423-72804442 | None:intergenic | 25.0% |
! | ACAACTCTCAATACAAATAA+AGG | + | chr5.3:72804468-72804487 | None:intergenic | 25.0% |
! | AGTTAAAAAATGAACCTTTG+CGG | + | chr5.3:72802988-72803007 | None:intergenic | 25.0% |
! | ATAATATCCTCAATAAAAGC+CGG | + | chr5.3:72805739-72805758 | None:intergenic | 25.0% |
! | ATTCTATATCACTGAAATGT+TGG | - | chr5.3:72805432-72805451 | MS.gene47679:intron | 25.0% |
! | CTAATTGCAATCTATTTCAT+TGG | - | chr5.3:72804115-72804134 | MS.gene47679:CDS | 25.0% |
! | TAAACTTAAGTTACATGTAC+AGG | + | chr5.3:72804092-72804111 | None:intergenic | 25.0% |
! | TACAATGGAATAAAAGTAAG+AGG | - | chr5.3:72806565-72806584 | MS.gene47679:CDS | 25.0% |
! | TTCTATATCACTGAAATGTT+GGG | - | chr5.3:72805433-72805452 | MS.gene47679:intron | 25.0% |
! | TTGGATCGAAATATAGTTTA+TGG | - | chr5.3:72803805-72803824 | MS.gene47679:CDS | 25.0% |
!! | AAAACCATTTTATGCTATCT+TGG | - | chr5.3:72804217-72804236 | MS.gene47679:intron | 25.0% |
!! | AAACCATTTTATGCTATCTT+GGG | - | chr5.3:72804218-72804237 | MS.gene47679:intron | 25.0% |
!! | GCTTTGTTAGAGTTTAAAAT+TGG | - | chr5.3:72804261-72804280 | MS.gene47679:intron | 25.0% |
!!! | AGTTTTGATAAAATGAATGG+TGG | + | chr5.3:72805321-72805340 | None:intergenic | 25.0% |
!!! | ATTTGAAATGATTTTGCAAG+AGG | - | chr5.3:72805051-72805070 | MS.gene47679:CDS | 25.0% |
!!! | CATTTTAGAAGATAAAGTGT+GGG | - | chr5.3:72806634-72806653 | MS.gene47679:intron | 25.0% |
!!! | GTGTTTTTTTTGACATGTTT+TGG | - | chr5.3:72803402-72803421 | MS.gene47679:intron | 25.0% |
!!! | TAGATTATAGATCTGGTTTT+AGG | - | chr5.3:72803090-72803109 | MS.gene47679:CDS | 25.0% |
!!! | TTGTTGTATTTTGGTTCAAT+AGG | - | chr5.3:72804167-72804186 | MS.gene47679:CDS | 25.0% |
!!! | TTTGATGATACCTATTTTCA+GGG | - | chr5.3:72806076-72806095 | MS.gene47679:intron | 25.0% |
AAGACCTAGATAAACTATGA+GGG | - | chr5.3:72803750-72803769 | MS.gene47679:CDS | 30.0% | |
AAGATAGTTAGGGGATATAA+TGG | - | chr5.3:72806104-72806123 | MS.gene47679:intron | 30.0% | |
ATTGGTAAAAAACGGGAATA+GGG | - | chr5.3:72803242-72803261 | MS.gene47679:intron | 30.0% | |
CTTTCTTAATCTTCACAAAG+CGG | - | chr5.3:72806373-72806392 | MS.gene47679:intron | 30.0% | |
GGTACAGATATTAATTCACT+AGG | - | chr5.3:72806863-72806882 | MS.gene47679:intron | 30.0% | |
GTTAAAAAATGAACCTTTGC+GGG | + | chr5.3:72802987-72803006 | None:intergenic | 30.0% | |
TAACCCAAGATAGCATAAAA+TGG | + | chr5.3:72804224-72804243 | None:intergenic | 30.0% | |
TATTGGTAAAAAACGGGAAT+AGG | - | chr5.3:72803241-72803260 | MS.gene47679:intron | 30.0% | |
TGAAGGACACAATTATTAAG+TGG | - | chr5.3:72805648-72805667 | MS.gene47679:intron | 30.0% | |
TGTGAGTATATGAAACCATA+CGG | + | chr5.3:72805806-72805825 | None:intergenic | 30.0% | |
TTTCCAAATCATGATCGTAT+AGG | + | chr5.3:72804799-72804818 | None:intergenic | 30.0% | |
! | AGACATTTTCTCAATGTCTT+TGG | + | chr5.3:72806441-72806460 | None:intergenic | 30.0% |
! | ATTCACACTGATTACTCATT+TGG | - | chr5.3:72804554-72804573 | MS.gene47679:intron | 30.0% |
! | TAATGATATGCCATTTGTAC+CGG | - | chr5.3:72805717-72805736 | MS.gene47679:intron | 30.0% |
! | TACACTTCAACAACGTATTT+TGG | - | chr5.3:72806297-72806316 | MS.gene47679:intron | 30.0% |
! | TATACGATCATGATTTGGAA+AGG | - | chr5.3:72804798-72804817 | MS.gene47679:intron | 30.0% |
! | TGATTGCGATTGTTGTATTT+TGG | - | chr5.3:72804158-72804177 | MS.gene47679:CDS | 30.0% |
!! | CTTTGATGATACCTATTTTC+AGG | - | chr5.3:72806075-72806094 | MS.gene47679:intron | 30.0% |
!! | GCATTTTAGAAGATAAAGTG+TGG | - | chr5.3:72806633-72806652 | MS.gene47679:intron | 30.0% |
!!! | ACACTATTGGTTTGAGTTTT+AGG | - | chr5.3:72805686-72805705 | MS.gene47679:intron | 30.0% |
!!! | AGTTCACTACTTTTTTGTTC+AGG | - | chr5.3:72804493-72804512 | MS.gene47679:intron | 30.0% |
!!! | CATAAATATTTTTTACGCGG+TGG | - | chr5.3:72805553-72805572 | MS.gene47679:CDS | 30.0% |
AAACCGTGTTCAAGATGTTT+GGG | - | chr5.3:72805472-72805491 | MS.gene47679:intron | 35.0% | |
AAACTCAAATTCGTTGATGC+AGG | - | chr5.3:72805336-72805355 | MS.gene47679:CDS | 35.0% | |
AAAGTGGCTGATTATGATTC+AGG | - | chr5.3:72804684-72804703 | MS.gene47679:CDS | 35.0% | |
ACAAGGACAAAGAACTGAAA+TGG | + | chr5.3:72805603-72805622 | None:intergenic | 35.0% | |
ACTTCATGATGCTTCATTTC+AGG | - | chr5.3:72803584-72803603 | MS.gene47679:CDS | 35.0% | |
ATACCATTCAAGATGACCAT+AGG | + | chr5.3:72804917-72804936 | None:intergenic | 35.0% | |
ATATGTCACCATGTGGAAAT+GGG | + | chr5.3:72804340-72804359 | None:intergenic | 35.0% | |
ATCATCAAAGCCAGTTAGTT+TGG | + | chr5.3:72806065-72806084 | None:intergenic | 35.0% | |
ATTCTGTAGCCTACAAAACA+TGG | + | chr5.3:72806747-72806766 | None:intergenic | 35.0% | |
CAAATACGAGATATCAGAAG+TGG | + | chr5.3:72807121-72807140 | None:intergenic | 35.0% | |
CAACGAGTGTATTACATACA+GGG | - | chr5.3:72806975-72806994 | MS.gene47679:intron | 35.0% | |
GAAGACCTAGATAAACTATG+AGG | - | chr5.3:72803749-72803768 | MS.gene47679:CDS | 35.0% | |
GAATGCTTCAATCTTTCCTA+TGG | - | chr5.3:72804898-72804917 | MS.gene47679:intron | 35.0% | |
GAGATACTGAATCTGCATAA+AGG | + | chr5.3:72806831-72806850 | None:intergenic | 35.0% | |
GATTAATAAGTGACTCCGTA+TGG | - | chr5.3:72805788-72805807 | MS.gene47679:intron | 35.0% | |
GCTATGCACAGAAACATAAA+TGG | + | chr5.3:72806784-72806803 | None:intergenic | 35.0% | |
GTAACCAGGTATATAGAGAA+GGG | + | chr5.3:72805886-72805905 | None:intergenic | 35.0% | |
GTTTCCCTCATAGTTTATCT+AGG | + | chr5.3:72803757-72803776 | None:intergenic | 35.0% | |
GTTTGGTAAACCAACAAAAC+AGG | + | chr5.3:72806048-72806067 | None:intergenic | 35.0% | |
TAAAAGTAAGAGGTTCAGAG+TGG | - | chr5.3:72806575-72806594 | MS.gene47679:CDS | 35.0% | |
TCAAACCAAACCATACCTTT+GGG | - | chr5.3:72804307-72804326 | MS.gene47679:intron | 35.0% | |
TCAATAAAAGCCGGTACAAA+TGG | + | chr5.3:72805730-72805749 | None:intergenic | 35.0% | |
TCAGTGGTATTTATGCAGAA+TGG | - | chr5.3:72805385-72805404 | MS.gene47679:intron | 35.0% | |
TCGACACTGGTAATAATTTG+AGG | - | chr5.3:72803683-72803702 | MS.gene47679:CDS | 35.0% | |
TGAAGGTGACTACTGAAAAT+GGG | - | chr5.3:72806129-72806148 | MS.gene47679:intron | 35.0% | |
TGGTATTTATGCAGAATGGA+GGG | - | chr5.3:72805389-72805408 | MS.gene47679:intron | 35.0% | |
TGTAACCAGGTATATAGAGA+AGG | + | chr5.3:72805887-72805906 | None:intergenic | 35.0% | |
TGTCCTATACGATCATGATT+TGG | - | chr5.3:72804793-72804812 | MS.gene47679:intron | 35.0% | |
TGTTGTTGTACTGTCTATGT+AGG | - | chr5.3:72803468-72803487 | MS.gene47679:intron | 35.0% | |
TTCTCTATATACCTGGTTAC+AGG | - | chr5.3:72805886-72805905 | MS.gene47679:intron | 35.0% | |
TTGGGTTATACAACTTCACT+TGG | - | chr5.3:72804236-72804255 | MS.gene47679:intron | 35.0% | |
TTTCCTATGGTCATCTTGAA+TGG | - | chr5.3:72804911-72804930 | MS.gene47679:intron | 35.0% | |
! | AAGTCTTTGTCCTGTTTTGT+TGG | - | chr5.3:72806035-72806054 | MS.gene47679:intron | 35.0% |
! | AATTGAAAGTGCACGAAGAA+TGG | + | chr5.3:72805240-72805259 | None:intergenic | 35.0% |
! | ATGTGTACTGTCTAGTTTAG+AGG | - | chr5.3:72806705-72806724 | MS.gene47679:intron | 35.0% |
! | TCTCTTGAACCATGTTTTGT+AGG | - | chr5.3:72806735-72806754 | MS.gene47679:intron | 35.0% |
! | TGTTTCTGTGCATAGCTATA+TGG | - | chr5.3:72806788-72806807 | MS.gene47679:intron | 35.0% |
!! | TGATTATGATTCAGGTTGCA+TGG | - | chr5.3:72804692-72804711 | MS.gene47679:CDS | 35.0% |
!! | TGTTGGTTTACCAAACTAAC+TGG | - | chr5.3:72806052-72806071 | MS.gene47679:intron | 35.0% |
!! | TTGGTTCCTCTAAAGTGATA+GGG | - | chr5.3:72806600-72806619 | MS.gene47679:intron | 35.0% |
!! | TTTGGTTCCTCTAAAGTGAT+AGG | - | chr5.3:72806599-72806618 | MS.gene47679:intron | 35.0% |
!!! | ATTTGTACCGGCTTTTATTG+AGG | - | chr5.3:72805729-72805748 | MS.gene47679:intron | 35.0% |
AAATGAACCTTTGCGGGAAT+TGG | + | chr5.3:72802981-72803000 | None:intergenic | 40.0% | |
AAATGTTGGGACCAGGTAAT+TGG | - | chr5.3:72805446-72805465 | MS.gene47679:intron | 40.0% | |
AACCCCAAACATCTTGAACA+CGG | + | chr5.3:72805478-72805497 | None:intergenic | 40.0% | |
AACCGTGTTCAAGATGTTTG+GGG | - | chr5.3:72805473-72805492 | MS.gene47679:intron | 40.0% | |
AATGAACCTTTGCGGGAATT+GGG | + | chr5.3:72802980-72802999 | None:intergenic | 40.0% | |
ACACTGACACTTCAGATTGA+AGG | + | chr5.3:72803913-72803932 | None:intergenic | 40.0% | |
ACTTCTGTAACCAACTCTTG+TGG | + | chr5.3:72805022-72805041 | None:intergenic | 40.0% | |
AGATATATTCCAGCCAGAGT+TGG | - | chr5.3:72807078-72807097 | MS.gene47679:intron | 40.0% | |
AGATTCAGTATCTCGTGTCT+CGG | - | chr5.3:72806837-72806856 | MS.gene47679:intron | 40.0% | |
AGTTTGCAATGAGAATCCTC+TGG | - | chr5.3:72804715-72804734 | MS.gene47679:CDS | 40.0% | |
ATCTTTACCATGATGCACCT+AGG | + | chr5.3:72804592-72804611 | None:intergenic | 40.0% | |
ATCTTTGTCGCCCTGAAAAT+AGG | + | chr5.3:72806089-72806108 | None:intergenic | 40.0% | |
ATGCGTGTCCTAGAAAGATA+CGG | - | chr5.3:72807049-72807068 | MS.gene47679:intron | 40.0% | |
ATGGATAGTCGTATCACTAG+AGG | - | chr5.3:72803721-72803740 | MS.gene47679:CDS | 40.0% | |
CAGAGTTATCCTCACAAGTA+CGG | + | chr5.3:72804775-72804794 | None:intergenic | 40.0% | |
CATATGTCACCATGTGGAAA+TGG | + | chr5.3:72804341-72804360 | None:intergenic | 40.0% | |
CCTATAGTTATGACGCAGTT+GGG | - | chr5.3:72806888-72806907 | MS.gene47679:intron | 40.0% | |
CGTGTGAGTATCATTACTCT+TGG | + | chr5.3:72803663-72803682 | None:intergenic | 40.0% | |
CTAAAGTGATAGGGTCTGAA+GGG | - | chr5.3:72806609-72806628 | MS.gene47679:intron | 40.0% | |
CTATCATTGCTGTACCTCTT+GGG | - | chr5.3:72806174-72806193 | MS.gene47679:intron | 40.0% | |
CTTCAGATTGAAGGTTTGTC+TGG | + | chr5.3:72803904-72803923 | None:intergenic | 40.0% | |
GAAACCGTGTTCAAGATGTT+TGG | - | chr5.3:72805471-72805490 | MS.gene47679:intron | 40.0% | |
GAAATGGGAATTTGTCCCAA+AGG | + | chr5.3:72804325-72804344 | None:intergenic | 40.0% | |
GAATCAAGTTCCACAAGAGT+TGG | - | chr5.3:72805009-72805028 | MS.gene47679:intron | 40.0% | |
GACAAATTCCCATTTCCACA+TGG | - | chr5.3:72804329-72804348 | MS.gene47679:intron | 40.0% | |
GAGGAGAGTAGATAAGATGA+TGG | - | chr5.3:72803702-72803721 | MS.gene47679:CDS | 40.0% | |
GCAACGAGTGTATTACATAC+AGG | - | chr5.3:72806974-72806993 | MS.gene47679:intron | 40.0% | |
GCTAATAATGACCTCAGTTC+TGG | + | chr5.3:72805278-72805297 | None:intergenic | 40.0% | |
GTAGTTGCTGAGACATCTTA+TGG | - | chr5.3:72806341-72806360 | MS.gene47679:intron | 40.0% | |
GTCAAACCAAACCATACCTT+TGG | - | chr5.3:72804306-72804325 | MS.gene47679:intron | 40.0% | |
GTGAAGGTGACTACTGAAAA+TGG | - | chr5.3:72806128-72806147 | MS.gene47679:intron | 40.0% | |
GTGGTATTTATGCAGAATGG+AGG | - | chr5.3:72805388-72805407 | MS.gene47679:intron | 40.0% | |
GTTATACATACCCTAGCCAA+GGG | - | chr5.3:72805959-72805978 | MS.gene47679:intron | 40.0% | |
TATCATTGCTGTACCTCTTG+GGG | - | chr5.3:72806175-72806194 | MS.gene47679:intron | 40.0% | |
TCAAATTCGTTGATGCAGGT+TGG | - | chr5.3:72805340-72805359 | MS.gene47679:CDS | 40.0% | |
TCACCGTCTGTTATTGTCAT+AGG | - | chr5.3:72803528-72803547 | MS.gene47679:intron | 40.0% | |
TCCTATAGTTATGACGCAGT+TGG | - | chr5.3:72806887-72806906 | MS.gene47679:intron | 40.0% | |
TCTTTCCAATCTGGAAGCTT+TGG | + | chr5.3:72806230-72806249 | None:intergenic | 40.0% | |
TGCATACTCTACTGGAACAA+TGG | - | chr5.3:72807009-72807028 | MS.gene47679:intron | 40.0% | |
TGTGTTCATATGTCACCATG+TGG | + | chr5.3:72804347-72804366 | None:intergenic | 40.0% | |
TGTTATACATACCCTAGCCA+AGG | - | chr5.3:72805958-72805977 | MS.gene47679:intron | 40.0% | |
TTACATACAGGGTCTGTTCA+TGG | - | chr5.3:72806986-72807005 | MS.gene47679:intron | 40.0% | |
TTCAGACCCTATCACTTTAG+AGG | + | chr5.3:72806609-72806628 | None:intergenic | 40.0% | |
TTGAAAGAAAGCCAGAACTG+AGG | - | chr5.3:72805264-72805283 | MS.gene47679:intron | 40.0% | |
TTGGCTAGGGTATGTATAAC+AGG | + | chr5.3:72805959-72805978 | None:intergenic | 40.0% | |
! | ACAATGTGTGTCTTCGAGTT+TGG | - | chr5.3:72803960-72803979 | MS.gene47679:CDS | 40.0% |
! | ACACACATTGTGTATTGACG+TGG | + | chr5.3:72803951-72803970 | None:intergenic | 40.0% |
! | ATGAAGCATCATGAAGTGCA+CGG | + | chr5.3:72803581-72803600 | None:intergenic | 40.0% |
! | CAAGAGTTGGTTACAGAAGT+TGG | - | chr5.3:72805022-72805041 | MS.gene47679:CDS | 40.0% |
! | TAAGAGGTTCAGAGTGGATT+TGG | - | chr5.3:72806581-72806600 | MS.gene47679:CDS | 40.0% |
! | TAGGGGATATAATGGAGTGA+AGG | - | chr5.3:72806112-72806131 | MS.gene47679:intron | 40.0% |
! | TCTAAAGTGATAGGGTCTGA+AGG | - | chr5.3:72806608-72806627 | MS.gene47679:intron | 40.0% |
! | TGTGTGTCTGTTATTTGCTG+TGG | - | chr5.3:72804013-72804032 | MS.gene47679:intron | 40.0% |
! | TTCTTGTTTACATGCCTGCT+GGG | - | chr5.3:72806408-72806427 | MS.gene47679:intron | 40.0% |
! | TTTGTCCCAAAGGTATGGTT+TGG | + | chr5.3:72804315-72804334 | None:intergenic | 40.0% |
!! | GTGTGTCTGTTATTTGCTGT+GGG | - | chr5.3:72804014-72804033 | MS.gene47679:intron | 40.0% |
!!! | AGATCTGGTTTTAGGATCGT+GGG | - | chr5.3:72803098-72803117 | MS.gene47679:CDS | 40.0% |
!!! | AGGTCGTTCTTTTAGAATCC+CGG | - | chr5.3:72804513-72804532 | MS.gene47679:intron | 40.0% |
!!! | TAGATCTGGTTTTAGGATCG+TGG | - | chr5.3:72803097-72803116 | MS.gene47679:CDS | 40.0% |
!!! | TTTGGTTTTCCTGTTGACCT+AGG | - | chr5.3:72804572-72804591 | MS.gene47679:intron | 40.0% |
AACCTCTCATACAGACCATG+CGG | + | chr5.3:72806917-72806936 | None:intergenic | 45.0% | |
AAGCTGCCATTGCTGATATC+GGG | - | chr5.3:72806249-72806268 | MS.gene47679:intron | 45.0% | |
AAGGTTTGTCTGGCATACGA+GGG | + | chr5.3:72803894-72803913 | None:intergenic | 45.0% | |
AATGTCAAGACCCTTGGCTA+GGG | + | chr5.3:72805972-72805991 | None:intergenic | 45.0% | |
ACCTCTTTACCGTACTTGTG+AGG | - | chr5.3:72804763-72804782 | MS.gene47679:intron | 45.0% | |
ACTAATCCCAATTCCCGCAA+AGG | - | chr5.3:72802971-72802990 | MS.gene47679:CDS | 45.0% | |
AGGGCGACAAAGATAGTTAG+GGG | - | chr5.3:72806095-72806114 | MS.gene47679:intron | 45.0% | |
AGTCGTATCACTAGAGGTAG+AGG | - | chr5.3:72803727-72803746 | MS.gene47679:CDS | 45.0% | |
ATCACTGAAATGTTGGGACC+AGG | - | chr5.3:72805439-72805458 | MS.gene47679:intron | 45.0% | |
ATGGCAGCTTCTTTCCAATC+TGG | + | chr5.3:72806239-72806258 | None:intergenic | 45.0% | |
ATGGTCTGTATGAGAGGTTG+CGG | - | chr5.3:72806918-72806937 | MS.gene47679:intron | 45.0% | |
ATTTATGCAGAATGGAGGGC+TGG | - | chr5.3:72805393-72805412 | MS.gene47679:intron | 45.0% | |
CACGGTTTCTTCCAATTACC+TGG | + | chr5.3:72805460-72805479 | None:intergenic | 45.0% | |
CAGGGCGACAAAGATAGTTA+GGG | - | chr5.3:72806094-72806113 | MS.gene47679:intron | 45.0% | |
CCACTTAGTGGGATAAGACT+GGG | - | chr5.3:72803852-72803871 | MS.gene47679:CDS | 45.0% | |
CCCAACTGCGTCATAACTAT+AGG | + | chr5.3:72806891-72806910 | None:intergenic | 45.0% | |
CCGCCTATGACAATAACAGA+CGG | + | chr5.3:72803534-72803553 | None:intergenic | 45.0% | |
CCGTCTGTTATTGTCATAGG+CGG | - | chr5.3:72803531-72803550 | MS.gene47679:intron | 45.0% | |
CGGGAATAGGGTTTGAAAAG+TGG | - | chr5.3:72803254-72803273 | MS.gene47679:intron | 45.0% | |
CTAGGGTATGTATAACAGGC+AGG | + | chr5.3:72805955-72805974 | None:intergenic | 45.0% | |
CTAGTTCCCCGTATCTTTCT+AGG | + | chr5.3:72807060-72807079 | None:intergenic | 45.0% | |
CTCACCCTTCTCTATATACC+TGG | - | chr5.3:72805879-72805898 | MS.gene47679:intron | 45.0% | |
CTTAATCTTCACAAAGCGGC+AGG | - | chr5.3:72806377-72806396 | MS.gene47679:intron | 45.0% | |
CTTATCCCACTAAGTGGGAT+CGG | + | chr5.3:72803849-72803868 | None:intergenic | 45.0% | |
GAAGCTGCCATTGCTGATAT+CGG | - | chr5.3:72806248-72806267 | MS.gene47679:intron | 45.0% | |
GAGCAATTCTTCCTGTAACC+AGG | + | chr5.3:72805900-72805919 | None:intergenic | 45.0% | |
GCAGACAGATAATGTACGAC+AGG | - | chr5.3:72805196-72805215 | MS.gene47679:intron | 45.0% | |
GCAGGCATGTAAACAAGAAC+AGG | + | chr5.3:72806407-72806426 | None:intergenic | 45.0% | |
GCTATCATTGCTGTACCTCT+TGG | - | chr5.3:72806173-72806192 | MS.gene47679:intron | 45.0% | |
GGGAATTTGTCCCAAAGGTA+TGG | + | chr5.3:72804320-72804339 | None:intergenic | 45.0% | |
GTTCATGGTGCATACTCTAC+TGG | - | chr5.3:72807001-72807020 | MS.gene47679:intron | 45.0% | |
TAGCCAAGGGTCTTGACATT+CGG | - | chr5.3:72805972-72805991 | MS.gene47679:intron | 45.0% | |
TATGCGCTCTTCGATATGGA+GGG | - | chr5.3:72804986-72805005 | MS.gene47679:intron | 45.0% | |
TCAGGGCGACAAAGATAGTT+AGG | - | chr5.3:72806093-72806112 | MS.gene47679:intron | 45.0% | |
TCCTCACAAGTACGGTAAAG+AGG | + | chr5.3:72804767-72804786 | None:intergenic | 45.0% | |
TCTGTTATTGTCATAGGCGG+TGG | - | chr5.3:72803534-72803553 | MS.gene47679:intron | 45.0% | |
TGCGTGTCCTAGAAAGATAC+GGG | - | chr5.3:72807050-72807069 | MS.gene47679:intron | 45.0% | |
TTACAGGAAGAATTGCTCCC+TGG | - | chr5.3:72805902-72805921 | MS.gene47679:intron | 45.0% | |
TTAGAATCCCGGGATAGACT+TGG | - | chr5.3:72804524-72804543 | MS.gene47679:intron | 45.0% | |
TTGAGCCAAAGCTTCCAGAT+TGG | - | chr5.3:72806222-72806241 | MS.gene47679:intron | 45.0% | |
TTTGCTTTCAGTACCCCAAG+AGG | + | chr5.3:72806191-72806210 | None:intergenic | 45.0% | |
! | AATCCTCTGGCTCCATTGAT+TGG | - | chr5.3:72804728-72804747 | MS.gene47679:intron | 45.0% |
! | AATTCGTTGATGCAGGTTGG+AGG | - | chr5.3:72805343-72805362 | MS.gene47679:CDS | 45.0% |
! | AGTTACCGGTGAAGAAGCAT+CGG | + | chr5.3:72806513-72806532 | None:intergenic | 45.0% |
! | ATCCTCTGGCTCCATTGATT+GGG | - | chr5.3:72804729-72804748 | MS.gene47679:intron | 45.0% |
! | ATTCGTTGATGCAGGTTGGA+GGG | - | chr5.3:72805344-72805363 | MS.gene47679:CDS | 45.0% |
! | CCAGTCTTATCCCACTAAGT+GGG | + | chr5.3:72803854-72803873 | None:intergenic | 45.0% |
! | GTGGACTGAGGATTCATGTA+TGG | - | chr5.3:72805572-72805591 | MS.gene47679:intron | 45.0% |
! | GTTCTTGTTTACATGCCTGC+TGG | - | chr5.3:72806407-72806426 | MS.gene47679:intron | 45.0% |
! | TGAAGCATCATGAAGTGCAC+GGG | + | chr5.3:72803580-72803599 | None:intergenic | 45.0% |
! | TTTCACACAAGGTGCTTCAG+TGG | - | chr5.3:72805369-72805388 | MS.gene47679:CDS | 45.0% |
!! | TGGTCATGGTCTTATGGTCA+GGG | - | chr5.3:72805925-72805944 | MS.gene47679:intron | 45.0% |
!!! | ATTTTTTACGCGGTGGACTG+AGG | - | chr5.3:72805560-72805579 | MS.gene47679:CDS | 45.0% |
!!! | CAACGTATTTTGGCCCAATG+TGG | - | chr5.3:72806307-72806326 | MS.gene47679:intron | 45.0% |
!!! | GGTCGTTCTTTTAGAATCCC+GGG | - | chr5.3:72804514-72804533 | MS.gene47679:intron | 45.0% |
AACCGCATGGTCTGTATGAG+AGG | - | chr5.3:72806912-72806931 | MS.gene47679:intron | 50.0% | |
AAGGGTCTTGACATTCGGCT+GGG | - | chr5.3:72805977-72805996 | MS.gene47679:intron | 50.0% | |
ACCATAAGACCATGACCACC+AGG | + | chr5.3:72805923-72805942 | None:intergenic | 50.0% | |
ACTAAGTGGGATCGGCTACA+TGG | + | chr5.3:72803841-72803860 | None:intergenic | 50.0% | |
ACTCCCAGGAACTCCACATT+GGG | + | chr5.3:72806323-72806342 | None:intergenic | 50.0% | |
ACTGAACCCTCTTCCAACTC+TGG | + | chr5.3:72807094-72807113 | None:intergenic | 50.0% | |
AGCTGCCATTGCTGATATCG+GGG | - | chr5.3:72806250-72806269 | MS.gene47679:intron | 50.0% | |
ATAACAGACGGTGACCTTCG+AGG | + | chr5.3:72803522-72803541 | None:intergenic | 50.0% | |
ATGCGCTCTTCGATATGGAG+GGG | - | chr5.3:72804987-72805006 | MS.gene47679:intron | 50.0% | |
ATGTAGCCGATCCCACTTAG+TGG | - | chr5.3:72803840-72803859 | MS.gene47679:CDS | 50.0% | |
ATGTCTCAGCAACTACTCCC+AGG | + | chr5.3:72806337-72806356 | None:intergenic | 50.0% | |
ATGTTGATCAGCAGCCTCGA+AGG | - | chr5.3:72803505-72803524 | MS.gene47679:intron | 50.0% | |
ATTCCAGCCAGAGTTGGAAG+AGG | - | chr5.3:72807084-72807103 | MS.gene47679:intron | 50.0% | |
CAGCTATGCGCTCTTCGATA+TGG | - | chr5.3:72804982-72805001 | MS.gene47679:intron | 50.0% | |
CATGATGCACCTAGGTCAAC+AGG | + | chr5.3:72804584-72804603 | None:intergenic | 50.0% | |
CCATAAGACCATGACCACCA+GGG | + | chr5.3:72805922-72805941 | None:intergenic | 50.0% | |
CCCACTTAGTGGGATAAGAC+TGG | - | chr5.3:72803851-72803870 | MS.gene47679:CDS | 50.0% | |
CTATGCGCTCTTCGATATGG+AGG | - | chr5.3:72804985-72805004 | MS.gene47679:intron | 50.0% | |
CTGTTGACCTAGGTGCATCA+TGG | - | chr5.3:72804582-72804601 | MS.gene47679:intron | 50.0% | |
GAAGGTTTGTCTGGCATACG+AGG | + | chr5.3:72803895-72803914 | None:intergenic | 50.0% | |
GAATGTCAAGACCCTTGGCT+AGG | + | chr5.3:72805973-72805992 | None:intergenic | 50.0% | |
GCGTGTCCTAGAAAGATACG+GGG | - | chr5.3:72807051-72807070 | MS.gene47679:intron | 50.0% | |
TACTCCCAGGAACTCCACAT+TGG | + | chr5.3:72806324-72806343 | None:intergenic | 50.0% | |
TACTGGAACAATGGCTGCTG+AGG | - | chr5.3:72807018-72807037 | MS.gene47679:intron | 50.0% | |
TATTGTCATAGGCGGTGGCA+TGG | - | chr5.3:72803539-72803558 | MS.gene47679:intron | 50.0% | |
TCAGTATCTCGTGTCTCGGT+GGG | - | chr5.3:72806841-72806860 | MS.gene47679:intron | 50.0% | |
TCCAACCCCGATATCAGCAA+TGG | + | chr5.3:72806258-72806277 | None:intergenic | 50.0% | |
TGATACTCACACGTCGACAC+TGG | - | chr5.3:72803670-72803689 | MS.gene47679:CDS | 50.0% | |
TGGTCTGTATGAGAGGTTGC+GGG | - | chr5.3:72806919-72806938 | MS.gene47679:intron | 50.0% | |
TGTAGCCGATCCCACTTAGT+GGG | - | chr5.3:72803841-72803860 | MS.gene47679:CDS | 50.0% | |
TTCAGTATCTCGTGTCTCGG+TGG | - | chr5.3:72806840-72806859 | MS.gene47679:intron | 50.0% | |
TTCCAGCCAGAGTTGGAAGA+GGG | - | chr5.3:72807085-72807104 | MS.gene47679:intron | 50.0% | |
TTCTGCCACCAAGTCTATCC+CGG | + | chr5.3:72804535-72804554 | None:intergenic | 50.0% | |
TTGTTTACATGCCTGCTGGG+CGG | - | chr5.3:72806411-72806430 | MS.gene47679:intron | 50.0% | |
! | CCCAGTCTTATCCCACTAAG+TGG | + | chr5.3:72803855-72803874 | None:intergenic | 50.0% |
! | TTCGTTGATGCAGGTTGGAG+GGG | - | chr5.3:72805345-72805364 | MS.gene47679:CDS | 50.0% |
!! | GGTCATGGTCTTATGGTCAG+GGG | - | chr5.3:72805926-72805945 | MS.gene47679:intron | 50.0% |
!! | GTGGTCATGGTCTTATGGTC+AGG | - | chr5.3:72805924-72805943 | MS.gene47679:intron | 50.0% |
!! | GTTACCGGTGAAGAAGCATC+GGG | + | chr5.3:72806512-72806531 | None:intergenic | 50.0% |
AACCCTCTTCCAACTCTGGC+TGG | + | chr5.3:72807090-72807109 | None:intergenic | 55.0% | |
AGGGTCTTGACATTCGGCTG+GGG | - | chr5.3:72805978-72805997 | MS.gene47679:intron | 55.0% | |
AGTCCCAGCCTCCCAATCAA+TGG | + | chr5.3:72804743-72804762 | None:intergenic | 55.0% | |
CAAGGGTCTTGACATTCGGC+TGG | - | chr5.3:72805976-72805995 | MS.gene47679:intron | 55.0% | |
CAGCCGAATGTCAAGACCCT+TGG | + | chr5.3:72805978-72805997 | None:intergenic | 55.0% | |
CAGGAAGAATTGCTCCCTGG+TGG | - | chr5.3:72805905-72805924 | MS.gene47679:intron | 55.0% | |
CAGTATCTCGTGTCTCGGTG+GGG | - | chr5.3:72806842-72806861 | MS.gene47679:intron | 55.0% | |
CCTTCCCGATGCTTCTTCAC+CGG | - | chr5.3:72806505-72806524 | MS.gene47679:CDS | 55.0% | |
CTCCCAATCAATGGAGCCAG+AGG | + | chr5.3:72804734-72804753 | None:intergenic | 55.0% | |
GAATCCCGGGATAGACTTGG+TGG | - | chr5.3:72804527-72804546 | MS.gene47679:intron | 55.0% | |
GAATTGCTCCCTGGTGGTCA+TGG | - | chr5.3:72805911-72805930 | MS.gene47679:intron | 55.0% | |
GCCATTGCTGATATCGGGGT+TGG | - | chr5.3:72806254-72806273 | MS.gene47679:intron | 55.0% | |
GTTGGAGGGGCTTTCACACA+AGG | - | chr5.3:72805358-72805377 | MS.gene47679:CDS | 55.0% | |
TCTGCCACCAAGTCTATCCC+GGG | + | chr5.3:72804534-72804553 | None:intergenic | 55.0% | |
TGGCCCAATGTGGAGTTCCT+GGG | - | chr5.3:72806317-72806336 | MS.gene47679:intron | 55.0% | |
TTGGCCCAATGTGGAGTTCC+TGG | - | chr5.3:72806316-72806335 | MS.gene47679:intron | 55.0% | |
! | CCCTGGTGGTCATGGTCTTA+TGG | - | chr5.3:72805919-72805938 | MS.gene47679:intron | 55.0% |
! | CTCTGGCTCCATTGATTGGG+AGG | - | chr5.3:72804732-72804751 | MS.gene47679:intron | 55.0% |
! | GCTCCATTGATTGGGAGGCT+GGG | - | chr5.3:72804737-72804756 | MS.gene47679:intron | 55.0% |
! | GTGTCTTCGAGTTTGGCTCG+TGG | - | chr5.3:72803967-72803986 | MS.gene47679:CDS | 55.0% |
CAATGGCTGCTGAGGACTGC+AGG | - | chr5.3:72807026-72807045 | MS.gene47679:intron | 60.0% | |
GACGCAGTTGGGAAACCGCA+TGG | - | chr5.3:72806899-72806918 | MS.gene47679:intron | 60.0% | |
TCATAGGCGGTGGCATGGCT+GGG | - | chr5.3:72803544-72803563 | MS.gene47679:intron | 60.0% | |
TTGACATTCGGCTGGGGCAC+AGG | - | chr5.3:72805984-72806003 | MS.gene47679:intron | 60.0% | |
! | GGCTCCATTGATTGGGAGGC+TGG | - | chr5.3:72804736-72804755 | MS.gene47679:intron | 60.0% |
!! | CCGGTGAAGAAGCATCGGGA+AGG | + | chr5.3:72806508-72806527 | None:intergenic | 60.0% |
GTCATAGGCGGTGGCATGGC+TGG | - | chr5.3:72803543-72803562 | MS.gene47679:intron | 65.0% | |
TTACATGCCTGCTGGGCGGC+TGG | - | chr5.3:72806415-72806434 | MS.gene47679:intron | 65.0% | |
TCTTTGGCCAGCCGCCCAGC+AGG | + | chr5.3:72806425-72806444 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 72802953 | 72807141 | 72802953 | ID=MS.gene47679 |
chr5.3 | mRNA | 72802953 | 72807141 | 72802953 | ID=MS.gene47679.t1;Parent=MS.gene47679 |
chr5.3 | exon | 72807102 | 72807141 | 72807102 | ID=MS.gene47679.t1.exon1;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72807102 | 72807141 | 72807102 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72806489 | 72806604 | 72806489 | ID=MS.gene47679.t1.exon2;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72806489 | 72806604 | 72806489 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72805491 | 72805579 | 72805491 | ID=MS.gene47679.t1.exon3;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72805491 | 72805579 | 72805491 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72805275 | 72805388 | 72805275 | ID=MS.gene47679.t1.exon4;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72805275 | 72805388 | 72805275 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72805022 | 72805109 | 72805022 | ID=MS.gene47679.t1.exon5;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72805022 | 72805109 | 72805022 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72804809 | 72804894 | 72804809 | ID=MS.gene47679.t1.exon6;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72804809 | 72804894 | 72804809 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72804634 | 72804736 | 72804634 | ID=MS.gene47679.t1.exon7;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72804634 | 72804736 | 72804634 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72804089 | 72804186 | 72804089 | ID=MS.gene47679.t1.exon8;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72804089 | 72804186 | 72804089 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72803568 | 72803997 | 72803568 | ID=MS.gene47679.t1.exon9;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72803568 | 72803997 | 72803568 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
chr5.3 | exon | 72802953 | 72803255 | 72802953 | ID=MS.gene47679.t1.exon10;Parent=MS.gene47679.t1 |
chr5.3 | CDS | 72802953 | 72803255 | 72802953 | ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1 |
Gene Sequence |
Protein sequence |