AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47679


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47679.t1 MTR_5g090300 98.975 488 5 0 1 488 1 488 0.0 999
MS.gene47679.t1 MTR_3g449620 83.469 490 79 1 1 488 1 490 0.0 818
MS.gene47679.t1 MTR_3g064370 64.634 492 170 1 1 488 1 492 0.0 658
MS.gene47679.t1 MTR_3g064370 65.060 415 141 1 78 488 1 415 0.0 563
MS.gene47679.t1 MTR_3g064370 67.609 389 126 0 1 389 1 389 0.0 555
MS.gene47679.t1 MTR_1g023510 34.737 475 260 12 30 454 867 1341 4.59e-67 234
MS.gene47679.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 7.44e-67 234
MS.gene47679.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 9.63e-67 233
MS.gene47679.t1 MTR_5g087920 76.000 125 30 0 280 404 12 136 6.29e-60 193
MS.gene47679.t1 MTR_6g084700 34.904 467 261 15 29 467 221 672 3.89e-55 197
MS.gene47679.t1 MTR_3g055090 32.373 451 259 13 29 454 160 589 1.74e-53 192
MS.gene47679.t1 MTR_8g464450 31.938 454 257 15 29 454 163 592 1.92e-42 161
MS.gene47679.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 2.46e-41 158
MS.gene47679.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 3.04e-41 158
MS.gene47679.t1 MTR_2g039160 26.715 554 287 18 26 472 4 545 2.63e-33 132
MS.gene47679.t1 MTR_3g033000 28.009 432 265 15 53 458 33 444 1.39e-30 124
MS.gene47679.t1 MTR_3g033000 27.586 377 231 14 53 407 33 389 8.73e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47679.t1 AT2G43020 78.776 490 102 2 1 488 1 490 0.0 788
MS.gene47679.t1 AT3G59050 78.367 490 102 3 1 488 1 488 0.0 781
MS.gene47679.t1 AT1G65840 62.474 477 171 2 20 488 21 497 0.0 630
MS.gene47679.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene47679.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene47679.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene47679.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene47679.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene47679.t1 AT1G62830 34.475 467 271 14 28 473 266 718 1.27e-54 196
MS.gene47679.t1 AT3G10390 32.700 474 264 15 14 456 169 618 5.24e-50 183
MS.gene47679.t1 AT3G10390 33.333 474 261 16 14 456 169 618 1.01e-49 182
MS.gene47679.t1 AT3G13682 33.966 474 254 14 17 454 140 590 1.09e-49 181
MS.gene47679.t1 AT3G10390 32.700 474 264 15 14 456 221 670 1.39e-49 182
MS.gene47679.t1 AT3G10390 33.333 474 261 16 14 456 221 670 1.47e-49 182
MS.gene47679.t1 AT5G13700 28.125 448 263 15 53 475 30 443 2.54e-34 134
MS.gene47679.t1 AT4G29720 23.766 547 290 13 26 465 3 529 3.10e-34 135

Find 154 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTTCAACAACGTATTT+TGG 0.147701 5.3:-72803775 MS.gene47679:CDS
AAATGAACCTTTGCGGGAAT+TGG 0.219044 5.3:+72807094 None:intergenic
CTAGTTCCCCGTATCTTTCT+AGG 0.225042 5.3:+72803015 None:intergenic
CCCTGGTGGTCATGGTCTTA+TGG 0.250033 5.3:-72804153 MS.gene47679:CDS
GTAGATAACTTATTCTTTGC+AGG 0.258142 5.3:-72803125 MS.gene47679:CDS
ACTTCATGATGCTTCATTTC+AGG 0.276706 5.3:-72806488 MS.gene47679:intron
TTGGCCCAATGTGGAGTTCC+TGG 0.277098 5.3:-72803756 MS.gene47679:CDS
GGCTCCATTGATTGGGAGGC+TGG 0.279036 5.3:-72805336 MS.gene47679:CDS
GTCATAGGCGGTGGCATGGC+TGG 0.307377 5.3:-72806529 MS.gene47679:CDS
CTATCATTGCTGTACCTCTT+GGG 0.307858 5.3:-72803898 MS.gene47679:CDS
TCAGGGCGACAAAGATAGTT+AGG 0.311809 5.3:-72803979 MS.gene47679:intron
TCTTTCCAATCTGGAAGCTT+TGG 0.318953 5.3:+72803845 None:intergenic
CAGCTATGCGCTCTTCGATA+TGG 0.322933 5.3:-72805090 MS.gene47679:CDS
GCTAATAATGACCTCAGTTC+TGG 0.323376 5.3:+72804797 None:intergenic
ATTCACACTGATTACTCATT+TGG 0.325638 5.3:-72805518 MS.gene47679:CDS
GCTATCATTGCTGTACCTCT+TGG 0.347891 5.3:-72803899 MS.gene47679:CDS
AATCCTCTGGCTCCATTGAT+TGG 0.348932 5.3:-72805344 MS.gene47679:CDS
GAAGCTGCCATTGCTGATAT+CGG 0.349601 5.3:-72803824 MS.gene47679:CDS
GTGAAGGTGACTACTGAAAA+TGG 0.357159 5.3:-72803944 MS.gene47679:CDS
AAGATAGTTAGGGGATATAA+TGG 0.370197 5.3:-72803968 MS.gene47679:CDS
GTTCTTGTTTACATGCCTGC+TGG 0.371256 5.3:-72803665 MS.gene47679:CDS
TTACATGCCTGCTGGGCGGC+TGG 0.383621 5.3:-72803657 MS.gene47679:CDS
ATGGCAGCTTCTTTCCAATC+TGG 0.384672 5.3:+72803836 None:intergenic
ATTCTATATCACTGAAATGT+TGG 0.387439 5.3:-72804640 MS.gene47679:CDS
GTGGTCATGGTCTTATGGTC+AGG 0.387478 5.3:-72804148 MS.gene47679:CDS
AATGAACCTTTGCGGGAATT+GGG 0.395567 5.3:+72807095 None:intergenic
TGTCCTATACGATCATGATT+TGG 0.402825 5.3:-72805279 MS.gene47679:CDS
TTGGCTAGGGTATGTATAAC+AGG 0.405023 5.3:+72804116 None:intergenic
GTAGTTGCTGAGACATCTTA+TGG 0.410548 5.3:-72803731 MS.gene47679:CDS
TCACCGTCTGTTATTGTCAT+AGG 0.417890 5.3:-72806544 MS.gene47679:CDS
TCTTTGGCCAGCCGCCCAGC+AGG 0.424805 5.3:+72803650 None:intergenic
CAAGGGTCTTGACATTCGGC+TGG 0.431094 5.3:-72804096 MS.gene47679:CDS
ATCCTCTGGCTCCATTGATT+GGG 0.431803 5.3:-72805343 MS.gene47679:CDS
TTGAGCCAAAGCTTCCAGAT+TGG 0.433940 5.3:-72803850 MS.gene47679:CDS
AATTGAAAGTGCACGAAGAA+TGG 0.438137 5.3:+72804835 None:intergenic
CCTATAGTTATGACGCAGTT+GGG 0.440336 5.3:-72803184 MS.gene47679:CDS
AAGCTGCCATTGCTGATATC+GGG 0.442969 5.3:-72803823 MS.gene47679:CDS
GAATTGCTCCCTGGTGGTCA+TGG 0.446683 5.3:-72804161 MS.gene47679:CDS
TTTCCAAATCATGATCGTAT+AGG 0.448434 5.3:+72805276 None:intergenic
CATGATGCACCTAGGTCAAC+AGG 0.448585 5.3:+72805491 None:intergenic
TTCTATATCACTGAAATGTT+GGG 0.449054 5.3:-72804639 MS.gene47679:CDS
TTCTTGTTTACATGCCTGCT+GGG 0.453430 5.3:-72803664 MS.gene47679:CDS
CAAGAGTTGGTTACAGAAGT+TGG 0.457743 5.3:-72805050 MS.gene47679:CDS
CAGGGCGACAAAGATAGTTA+GGG 0.457896 5.3:-72803978 MS.gene47679:CDS
TGGCCCAATGTGGAGTTCCT+GGG 0.459578 5.3:-72803755 MS.gene47679:CDS
GCTCCATTGATTGGGAGGCT+GGG 0.462828 5.3:-72805335 MS.gene47679:CDS
TTGACATTCGGCTGGGGCAC+AGG 0.462919 5.3:-72804088 MS.gene47679:intron
GCAGGCATGTAAACAAGAAC+AGG 0.463011 5.3:+72803668 None:intergenic
AACCCTCTTCCAACTCTGGC+TGG 0.467559 5.3:+72802985 None:intergenic
TTACATACAGGGTCTGTTCA+TGG 0.475124 5.3:-72803086 MS.gene47679:CDS
TCAGTATCTCGTGTCTCGGT+GGG 0.475314 5.3:-72803231 MS.gene47679:CDS
CCCAACTGCGTCATAACTAT+AGG 0.475903 5.3:+72803184 None:intergenic
GCAAAGAATAAGTTATCTAC+AGG 0.484780 5.3:+72803128 None:intergenic
CAATGGCTGCTGAGGACTGC+AGG 0.485843 5.3:-72803046 MS.gene47679:CDS
GTTCATGGTGCATACTCTAC+TGG 0.488310 5.3:-72803071 MS.gene47679:CDS
GCAACGAGTGTATTACATAC+AGG 0.492456 5.3:-72803098 MS.gene47679:CDS
TTCTGCCACCAAGTCTATCC+CGG 0.493984 5.3:+72805540 None:intergenic
AGTCCCAGCCTCCCAATCAA+TGG 0.497011 5.3:+72805332 None:intergenic
TGGTCATGGTCTTATGGTCA+GGG 0.502310 5.3:-72804147 MS.gene47679:CDS
TAGATAACTTATTCTTTGCA+GGG 0.507097 5.3:-72803124 MS.gene47679:CDS
GCCATTGCTGATATCGGGGT+TGG 0.507133 5.3:-72803818 MS.gene47679:CDS
TTCGTTGATGCAGGTTGGAG+GGG 0.509332 5.3:-72804727 MS.gene47679:intron
CTGTTGACCTAGGTGCATCA+TGG 0.509864 5.3:-72805490 MS.gene47679:intron
CTTAATCTTCACAAAGCGGC+AGG 0.511464 5.3:-72803695 MS.gene47679:CDS
TAGCCAAGGGTCTTGACATT+CGG 0.512251 5.3:-72804100 MS.gene47679:CDS
CTCTGGCTCCATTGATTGGG+AGG 0.513671 5.3:-72805340 MS.gene47679:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.515557 5.3:-72804687 MS.gene47679:CDS
TGCGTGTCCTAGAAAGATAC+GGG 0.517425 5.3:-72803022 MS.gene47679:CDS
TCCTATAGTTATGACGCAGT+TGG 0.517976 5.3:-72803185 MS.gene47679:CDS
TCATAGGCGGTGGCATGGCT+GGG 0.518133 5.3:-72806528 MS.gene47679:CDS
ACTGAACCCTCTTCCAACTC+TGG 0.519154 5.3:+72802981 None:intergenic
ACCATAAGACCATGACCACC+AGG 0.519331 5.3:+72804152 None:intergenic
TGGTCTGTATGAGAGGTTGC+GGG 0.523316 5.3:-72803153 MS.gene47679:CDS
CAGCCGAATGTCAAGACCCT+TGG 0.525666 5.3:+72804097 None:intergenic
ATGCGTGTCCTAGAAAGATA+CGG 0.527553 5.3:-72803023 MS.gene47679:CDS
ACTCCCAGGAACTCCACATT+GGG 0.528892 5.3:+72803752 None:intergenic
TCTGTTATTGTCATAGGCGG+TGG 0.531300 5.3:-72806538 MS.gene47679:CDS
ATGGTCTGTATGAGAGGTTG+CGG 0.532017 5.3:-72803154 MS.gene47679:CDS
ATTCGTTGATGCAGGTTGGA+GGG 0.533554 5.3:-72804728 MS.gene47679:intron
CAAATACGAGATATCAGAAG+TGG 0.533727 5.3:+72802954 None:intergenic
CCTTCCCGATGCTTCTTCAC+CGG 0.535712 5.3:-72803567 MS.gene47679:intron
GAATCAAGTTCCACAAGAGT+TGG 0.536968 5.3:-72805063 MS.gene47679:CDS
TGAAGGTGACTACTGAAAAT+GGG 0.540274 5.3:-72803943 MS.gene47679:CDS
AAGGGTCTTGACATTCGGCT+GGG 0.542089 5.3:-72804095 MS.gene47679:CDS
ATAACAGACGGTGACCTTCG+AGG 0.542275 5.3:+72806553 None:intergenic
AATTCGTTGATGCAGGTTGG+AGG 0.542488 5.3:-72804729 MS.gene47679:intron
ATTTATGCAGAATGGAGGGC+TGG 0.545277 5.3:-72804679 MS.gene47679:CDS
AGATATATTCCAGCCAGAGT+TGG 0.546397 5.3:-72802994 MS.gene47679:CDS
TTAGAATCCCGGGATAGACT+TGG 0.547928 5.3:-72805548 MS.gene47679:CDS
AGGGTCTTGACATTCGGCTG+GGG 0.550051 5.3:-72804094 MS.gene47679:CDS
TACTGGAACAATGGCTGCTG+AGG 0.550086 5.3:-72803054 MS.gene47679:CDS
CTATGCGCTCTTCGATATGG+AGG 0.552749 5.3:-72805087 MS.gene47679:CDS
TTCAGTATCTCGTGTCTCGG+TGG 0.557308 5.3:-72803232 MS.gene47679:CDS
TGCATACTCTACTGGAACAA+TGG 0.558563 5.3:-72803063 MS.gene47679:CDS
GAATGTCAAGACCCTTGGCT+AGG 0.558837 5.3:+72804102 None:intergenic
GAATCCCGGGATAGACTTGG+TGG 0.558858 5.3:-72805545 MS.gene47679:CDS
GTTGGAGGGGCTTTCACACA+AGG 0.559617 5.3:-72804714 MS.gene47679:CDS
AGTTACCGGTGAAGAAGCAT+CGG 0.560061 5.3:+72803562 None:intergenic
TACTCCCAGGAACTCCACAT+TGG 0.560675 5.3:+72803751 None:intergenic
GCAGACAGATAATGTACGAC+AGG 0.565366 5.3:-72804876 MS.gene47679:intron
CAGAGTTATCCTCACAAGTA+CGG 0.566480 5.3:+72805300 None:intergenic
TCCTCACAAGTACGGTAAAG+AGG 0.571437 5.3:+72805308 None:intergenic
AATGTCAAGACCCTTGGCTA+GGG 0.571742 5.3:+72804103 None:intergenic
TTTCACACAAGGTGCTTCAG+TGG 0.575044 5.3:-72804703 MS.gene47679:CDS
TAGGGGATATAATGGAGTGA+AGG 0.576412 5.3:-72803960 MS.gene47679:CDS
TGAAGCATCATGAAGTGCAC+GGG 0.579978 5.3:+72806495 None:intergenic
ATTCCAGCCAGAGTTGGAAG+AGG 0.581520 5.3:-72802988 MS.gene47679:CDS
AACCGCATGGTCTGTATGAG+AGG 0.584210 5.3:-72803160 MS.gene47679:CDS
CTAGGGTATGTATAACAGGC+AGG 0.584240 5.3:+72804120 None:intergenic
ATGTCTCAGCAACTACTCCC+AGG 0.584539 5.3:+72803738 None:intergenic
ACCTCTTTACCGTACTTGTG+AGG 0.587430 5.3:-72805309 MS.gene47679:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 5.3:-72804684 MS.gene47679:CDS
ATGAAGCATCATGAAGTGCA+CGG 0.590616 5.3:+72806494 None:intergenic
ATCACTGAAATGTTGGGACC+AGG 0.592003 5.3:-72804633 MS.gene47679:intron
GACGCAGTTGGGAAACCGCA+TGG 0.594696 5.3:-72803173 MS.gene47679:CDS
ATGTTGATCAGCAGCCTCGA+AGG 0.595305 5.3:-72806567 MS.gene47679:CDS
TCTGCCACCAAGTCTATCCC+GGG 0.596007 5.3:+72805541 None:intergenic
AGGGCGACAAAGATAGTTAG+GGG 0.596239 5.3:-72803977 MS.gene47679:CDS
TGTTATACATACCCTAGCCA+AGG 0.597299 5.3:-72804114 MS.gene47679:CDS
ACTAATCCCAATTCCCGCAA+AGG 0.600311 5.3:-72807101 MS.gene47679:intron
TATACGATCATGATTTGGAA+AGG 0.602711 5.3:-72805274 MS.gene47679:intron
GTTACCGGTGAAGAAGCATC+GGG 0.603982 5.3:+72803563 None:intergenic
CTCCCAATCAATGGAGCCAG+AGG 0.605374 5.3:+72805341 None:intergenic
TATCATTGCTGTACCTCTTG+GGG 0.605759 5.3:-72803897 MS.gene47679:CDS
GGTACAGATATTAATTCACT+AGG 0.607199 5.3:-72803209 MS.gene47679:CDS
CAACGAGTGTATTACATACA+GGG 0.607621 5.3:-72803097 MS.gene47679:CDS
TTACAGGAAGAATTGCTCCC+TGG 0.609122 5.3:-72804170 MS.gene47679:intron
AGATTCAGTATCTCGTGTCT+CGG 0.611152 5.3:-72803235 MS.gene47679:CDS
TGATTATGATTCAGGTTGCA+TGG 0.611159 5.3:-72805380 MS.gene47679:intron
TATGCGCTCTTCGATATGGA+GGG 0.614704 5.3:-72805086 MS.gene47679:CDS
TTCCAGCCAGAGTTGGAAGA+GGG 0.614724 5.3:-72802987 MS.gene47679:CDS
AGTTTGCAATGAGAATCCTC+TGG 0.615479 5.3:-72805357 MS.gene47679:CDS
TGGTATTTATGCAGAATGGA+GGG 0.621034 5.3:-72804683 MS.gene47679:CDS
TATTGTCATAGGCGGTGGCA+TGG 0.626229 5.3:-72806533 MS.gene47679:CDS
TCCAACCCCGATATCAGCAA+TGG 0.632597 5.3:+72803817 None:intergenic
GGTCATGGTCTTATGGTCAG+GGG 0.639940 5.3:-72804146 MS.gene47679:CDS
AGCTGCCATTGCTGATATCG+GGG 0.641150 5.3:-72803822 MS.gene47679:CDS
CCGTCTGTTATTGTCATAGG+CGG 0.645271 5.3:-72806541 MS.gene47679:CDS
ACTTCTGTAACCAACTCTTG+TGG 0.651673 5.3:+72805053 None:intergenic
CCGGTGAAGAAGCATCGGGA+AGG 0.655055 5.3:+72803567 None:intergenic
ATCTTTACCATGATGCACCT+AGG 0.655995 5.3:+72805483 None:intergenic
CAGTATCTCGTGTCTCGGTG+GGG 0.656943 5.3:-72803230 MS.gene47679:CDS
TTGAAAGAAAGCCAGAACTG+AGG 0.657435 5.3:-72804808 MS.gene47679:intron
TTTGCTTTCAGTACCCCAAG+AGG 0.665152 5.3:+72803884 None:intergenic
CTTTCTTAATCTTCACAAAG+CGG 0.672988 5.3:-72803699 MS.gene47679:CDS
CAGGAAGAATTGCTCCCTGG+TGG 0.673379 5.3:-72804167 MS.gene47679:CDS
ATGCGCTCTTCGATATGGAG+GGG 0.676953 5.3:-72805085 MS.gene47679:CDS
GTTATACATACCCTAGCCAA+GGG 0.684397 5.3:-72804113 MS.gene47679:CDS
AGATAACTTATTCTTTGCAG+GGG 0.691736 5.3:-72803123 MS.gene47679:CDS
CCATAAGACCATGACCACCA+GGG 0.693042 5.3:+72804153 None:intergenic
CCGCCTATGACAATAACAGA+CGG 0.695318 5.3:+72806541 None:intergenic
TTGTTTACATGCCTGCTGGG+CGG 0.710778 5.3:-72803661 MS.gene47679:CDS
AACCTCTCATACAGACCATG+CGG 0.717356 5.3:+72803158 None:intergenic
GCGTGTCCTAGAAAGATACG+GGG 0.777230 5.3:-72803021 MS.gene47679:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGAAATTTAATCAATT+AGG + chr5.3:72803197-72803216 None:intergenic 10.0%
!! ATATTATAATATTTGATGTA+AGG - chr5.3:72805752-72805771 MS.gene47679:intron 10.0%
!! TATTATAATATTTGATGTAA+GGG - chr5.3:72805753-72805772 MS.gene47679:intron 10.0%
!!! TTTTATATATTGGTAAAAAA+CGG - chr5.3:72803234-72803253 MS.gene47679:CDS 10.0%
!! AAAAAAAGTGATAAATCATT+TGG - chr5.3:72803280-72803299 MS.gene47679:intron 15.0%
!! AAAAAAGTGATAAATCATTT+GGG - chr5.3:72803281-72803300 MS.gene47679:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG - chr5.3:72804929-72804948 MS.gene47679:intron 15.0%
!! AGGAAAAACAAAATAATTAA+AGG + chr5.3:72804403-72804422 None:intergenic 15.0%
!! TTTATATATTGGTAAAAAAC+GGG - chr5.3:72803235-72803254 MS.gene47679:CDS 15.0%
!!! AATTTCTAATTTTTATGATC+AGG - chr5.3:72803206-72803225 MS.gene47679:CDS 15.0%
!!! ATGCATTTTTTGTTATTATT+TGG - chr5.3:72804824-72804843 MS.gene47679:CDS 15.0%
!!! ATTTAACTTGTTTTTTACAA+TGG - chr5.3:72806550-72806569 MS.gene47679:CDS 15.0%
!!! ATTTCTAATTTTTATGATCA+GGG - chr5.3:72803207-72803226 MS.gene47679:CDS 15.0%
!!! TTACATAAATATTTTTTACG+CGG - chr5.3:72805550-72805569 MS.gene47679:CDS 15.0%
!!! TTTAAAACTATTATAGTTAC+CGG + chr5.3:72806527-72806546 None:intergenic 15.0%
!!! TTTTTTTTTTGTTCTGAATT+TGG - chr5.3:72803051-72803070 MS.gene47679:CDS 15.0%
!! AACAAAATAATTAAAGGAGA+TGG + chr5.3:72804397-72804416 None:intergenic 20.0%
!! AATAATTCAAAGAGTTGTAT+TGG - chr5.3:72803335-72803354 MS.gene47679:intron 20.0%
!! AATATCCTGATCATAAAAAT+TGG + chr5.3:72803163-72803182 None:intergenic 20.0%
!! AATTGGAAATTTGATCAATT+AGG + chr5.3:72803146-72803165 None:intergenic 20.0%
!! AGATCTAAAGATTAATGTAT+TGG - chr5.3:72803786-72803805 MS.gene47679:CDS 20.0%
!! ATTTGATTAGATTATAGATC+TGG - chr5.3:72803083-72803102 MS.gene47679:CDS 20.0%
!! CCAAAATAAAAAATGAAAAG+AGG + chr5.3:72803013-72803032 None:intergenic 20.0%
!! GAATGGTATATTATTTGATA+TGG - chr5.3:72804928-72804947 MS.gene47679:intron 20.0%
!! TCTAATAAAAAAGATCAACA+AGG + chr5.3:72805620-72805639 None:intergenic 20.0%
!! TTTATTAGACACATTATTGA+AGG - chr5.3:72805631-72805650 MS.gene47679:intron 20.0%
!!! AATTTCCAATTTTTATGATC+AGG - chr5.3:72803155-72803174 MS.gene47679:CDS 20.0%
!!! AGTTCTTATTTATACACTAT+TGG - chr5.3:72805673-72805692 MS.gene47679:intron 20.0%
!!! ATTTGTTTGAAGTTTTGTTT+TGG - chr5.3:72806012-72806031 MS.gene47679:intron 20.0%
!!! CCTCTTTTCATTTTTTATTT+TGG - chr5.3:72803010-72803029 MS.gene47679:CDS 20.0%
!!! TCAGGGTATTTTTTATATAT+TGG - chr5.3:72803224-72803243 MS.gene47679:CDS 20.0%
!!! TTGAGTTTTGATAAAATGAA+TGG + chr5.3:72805324-72805343 None:intergenic 20.0%
!!! TTTTATTTTAGCATTGAAAG+TGG - chr5.3:72804668-72804687 MS.gene47679:CDS 20.0%
! AATGTTTAAATGAGAAGAAG+AGG + chr5.3:72804423-72804442 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG + chr5.3:72804468-72804487 None:intergenic 25.0%
! AGTTAAAAAATGAACCTTTG+CGG + chr5.3:72802988-72803007 None:intergenic 25.0%
! ATAATATCCTCAATAAAAGC+CGG + chr5.3:72805739-72805758 None:intergenic 25.0%
! ATTCTATATCACTGAAATGT+TGG - chr5.3:72805432-72805451 MS.gene47679:intron 25.0%
! CTAATTGCAATCTATTTCAT+TGG - chr5.3:72804115-72804134 MS.gene47679:CDS 25.0%
! TAAACTTAAGTTACATGTAC+AGG + chr5.3:72804092-72804111 None:intergenic 25.0%
! TACAATGGAATAAAAGTAAG+AGG - chr5.3:72806565-72806584 MS.gene47679:CDS 25.0%
! TTCTATATCACTGAAATGTT+GGG - chr5.3:72805433-72805452 MS.gene47679:intron 25.0%
! TTGGATCGAAATATAGTTTA+TGG - chr5.3:72803805-72803824 MS.gene47679:CDS 25.0%
!! AAAACCATTTTATGCTATCT+TGG - chr5.3:72804217-72804236 MS.gene47679:intron 25.0%
!! AAACCATTTTATGCTATCTT+GGG - chr5.3:72804218-72804237 MS.gene47679:intron 25.0%
!! GCTTTGTTAGAGTTTAAAAT+TGG - chr5.3:72804261-72804280 MS.gene47679:intron 25.0%
!!! AGTTTTGATAAAATGAATGG+TGG + chr5.3:72805321-72805340 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG - chr5.3:72805051-72805070 MS.gene47679:CDS 25.0%
!!! CATTTTAGAAGATAAAGTGT+GGG - chr5.3:72806634-72806653 MS.gene47679:intron 25.0%
!!! GTGTTTTTTTTGACATGTTT+TGG - chr5.3:72803402-72803421 MS.gene47679:intron 25.0%
!!! TAGATTATAGATCTGGTTTT+AGG - chr5.3:72803090-72803109 MS.gene47679:CDS 25.0%
!!! TTGTTGTATTTTGGTTCAAT+AGG - chr5.3:72804167-72804186 MS.gene47679:CDS 25.0%
!!! TTTGATGATACCTATTTTCA+GGG - chr5.3:72806076-72806095 MS.gene47679:intron 25.0%
AAGACCTAGATAAACTATGA+GGG - chr5.3:72803750-72803769 MS.gene47679:CDS 30.0%
AAGATAGTTAGGGGATATAA+TGG - chr5.3:72806104-72806123 MS.gene47679:intron 30.0%
ATTGGTAAAAAACGGGAATA+GGG - chr5.3:72803242-72803261 MS.gene47679:intron 30.0%
CTTTCTTAATCTTCACAAAG+CGG - chr5.3:72806373-72806392 MS.gene47679:intron 30.0%
GGTACAGATATTAATTCACT+AGG - chr5.3:72806863-72806882 MS.gene47679:intron 30.0%
GTTAAAAAATGAACCTTTGC+GGG + chr5.3:72802987-72803006 None:intergenic 30.0%
TAACCCAAGATAGCATAAAA+TGG + chr5.3:72804224-72804243 None:intergenic 30.0%
TATTGGTAAAAAACGGGAAT+AGG - chr5.3:72803241-72803260 MS.gene47679:intron 30.0%
TGAAGGACACAATTATTAAG+TGG - chr5.3:72805648-72805667 MS.gene47679:intron 30.0%
TGTGAGTATATGAAACCATA+CGG + chr5.3:72805806-72805825 None:intergenic 30.0%
TTTCCAAATCATGATCGTAT+AGG + chr5.3:72804799-72804818 None:intergenic 30.0%
! AGACATTTTCTCAATGTCTT+TGG + chr5.3:72806441-72806460 None:intergenic 30.0%
! ATTCACACTGATTACTCATT+TGG - chr5.3:72804554-72804573 MS.gene47679:intron 30.0%
! TAATGATATGCCATTTGTAC+CGG - chr5.3:72805717-72805736 MS.gene47679:intron 30.0%
! TACACTTCAACAACGTATTT+TGG - chr5.3:72806297-72806316 MS.gene47679:intron 30.0%
! TATACGATCATGATTTGGAA+AGG - chr5.3:72804798-72804817 MS.gene47679:intron 30.0%
! TGATTGCGATTGTTGTATTT+TGG - chr5.3:72804158-72804177 MS.gene47679:CDS 30.0%
!! CTTTGATGATACCTATTTTC+AGG - chr5.3:72806075-72806094 MS.gene47679:intron 30.0%
!! GCATTTTAGAAGATAAAGTG+TGG - chr5.3:72806633-72806652 MS.gene47679:intron 30.0%
!!! ACACTATTGGTTTGAGTTTT+AGG - chr5.3:72805686-72805705 MS.gene47679:intron 30.0%
!!! AGTTCACTACTTTTTTGTTC+AGG - chr5.3:72804493-72804512 MS.gene47679:intron 30.0%
!!! CATAAATATTTTTTACGCGG+TGG - chr5.3:72805553-72805572 MS.gene47679:CDS 30.0%
AAACCGTGTTCAAGATGTTT+GGG - chr5.3:72805472-72805491 MS.gene47679:intron 35.0%
AAACTCAAATTCGTTGATGC+AGG - chr5.3:72805336-72805355 MS.gene47679:CDS 35.0%
AAAGTGGCTGATTATGATTC+AGG - chr5.3:72804684-72804703 MS.gene47679:CDS 35.0%
ACAAGGACAAAGAACTGAAA+TGG + chr5.3:72805603-72805622 None:intergenic 35.0%
ACTTCATGATGCTTCATTTC+AGG - chr5.3:72803584-72803603 MS.gene47679:CDS 35.0%
ATACCATTCAAGATGACCAT+AGG + chr5.3:72804917-72804936 None:intergenic 35.0%
ATATGTCACCATGTGGAAAT+GGG + chr5.3:72804340-72804359 None:intergenic 35.0%
ATCATCAAAGCCAGTTAGTT+TGG + chr5.3:72806065-72806084 None:intergenic 35.0%
ATTCTGTAGCCTACAAAACA+TGG + chr5.3:72806747-72806766 None:intergenic 35.0%
CAAATACGAGATATCAGAAG+TGG + chr5.3:72807121-72807140 None:intergenic 35.0%
CAACGAGTGTATTACATACA+GGG - chr5.3:72806975-72806994 MS.gene47679:intron 35.0%
GAAGACCTAGATAAACTATG+AGG - chr5.3:72803749-72803768 MS.gene47679:CDS 35.0%
GAATGCTTCAATCTTTCCTA+TGG - chr5.3:72804898-72804917 MS.gene47679:intron 35.0%
GAGATACTGAATCTGCATAA+AGG + chr5.3:72806831-72806850 None:intergenic 35.0%
GATTAATAAGTGACTCCGTA+TGG - chr5.3:72805788-72805807 MS.gene47679:intron 35.0%
GCTATGCACAGAAACATAAA+TGG + chr5.3:72806784-72806803 None:intergenic 35.0%
GTAACCAGGTATATAGAGAA+GGG + chr5.3:72805886-72805905 None:intergenic 35.0%
GTTTCCCTCATAGTTTATCT+AGG + chr5.3:72803757-72803776 None:intergenic 35.0%
GTTTGGTAAACCAACAAAAC+AGG + chr5.3:72806048-72806067 None:intergenic 35.0%
TAAAAGTAAGAGGTTCAGAG+TGG - chr5.3:72806575-72806594 MS.gene47679:CDS 35.0%
TCAAACCAAACCATACCTTT+GGG - chr5.3:72804307-72804326 MS.gene47679:intron 35.0%
TCAATAAAAGCCGGTACAAA+TGG + chr5.3:72805730-72805749 None:intergenic 35.0%
TCAGTGGTATTTATGCAGAA+TGG - chr5.3:72805385-72805404 MS.gene47679:intron 35.0%
TCGACACTGGTAATAATTTG+AGG - chr5.3:72803683-72803702 MS.gene47679:CDS 35.0%
TGAAGGTGACTACTGAAAAT+GGG - chr5.3:72806129-72806148 MS.gene47679:intron 35.0%
TGGTATTTATGCAGAATGGA+GGG - chr5.3:72805389-72805408 MS.gene47679:intron 35.0%
TGTAACCAGGTATATAGAGA+AGG + chr5.3:72805887-72805906 None:intergenic 35.0%
TGTCCTATACGATCATGATT+TGG - chr5.3:72804793-72804812 MS.gene47679:intron 35.0%
TGTTGTTGTACTGTCTATGT+AGG - chr5.3:72803468-72803487 MS.gene47679:intron 35.0%
TTCTCTATATACCTGGTTAC+AGG - chr5.3:72805886-72805905 MS.gene47679:intron 35.0%
TTGGGTTATACAACTTCACT+TGG - chr5.3:72804236-72804255 MS.gene47679:intron 35.0%
TTTCCTATGGTCATCTTGAA+TGG - chr5.3:72804911-72804930 MS.gene47679:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG - chr5.3:72806035-72806054 MS.gene47679:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG + chr5.3:72805240-72805259 None:intergenic 35.0%
! ATGTGTACTGTCTAGTTTAG+AGG - chr5.3:72806705-72806724 MS.gene47679:intron 35.0%
! TCTCTTGAACCATGTTTTGT+AGG - chr5.3:72806735-72806754 MS.gene47679:intron 35.0%
! TGTTTCTGTGCATAGCTATA+TGG - chr5.3:72806788-72806807 MS.gene47679:intron 35.0%
!! TGATTATGATTCAGGTTGCA+TGG - chr5.3:72804692-72804711 MS.gene47679:CDS 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG - chr5.3:72806052-72806071 MS.gene47679:intron 35.0%
!! TTGGTTCCTCTAAAGTGATA+GGG - chr5.3:72806600-72806619 MS.gene47679:intron 35.0%
!! TTTGGTTCCTCTAAAGTGAT+AGG - chr5.3:72806599-72806618 MS.gene47679:intron 35.0%
!!! ATTTGTACCGGCTTTTATTG+AGG - chr5.3:72805729-72805748 MS.gene47679:intron 35.0%
AAATGAACCTTTGCGGGAAT+TGG + chr5.3:72802981-72803000 None:intergenic 40.0%
AAATGTTGGGACCAGGTAAT+TGG - chr5.3:72805446-72805465 MS.gene47679:intron 40.0%
AACCCCAAACATCTTGAACA+CGG + chr5.3:72805478-72805497 None:intergenic 40.0%
AACCGTGTTCAAGATGTTTG+GGG - chr5.3:72805473-72805492 MS.gene47679:intron 40.0%
AATGAACCTTTGCGGGAATT+GGG + chr5.3:72802980-72802999 None:intergenic 40.0%
ACACTGACACTTCAGATTGA+AGG + chr5.3:72803913-72803932 None:intergenic 40.0%
ACTTCTGTAACCAACTCTTG+TGG + chr5.3:72805022-72805041 None:intergenic 40.0%
AGATATATTCCAGCCAGAGT+TGG - chr5.3:72807078-72807097 MS.gene47679:intron 40.0%
AGATTCAGTATCTCGTGTCT+CGG - chr5.3:72806837-72806856 MS.gene47679:intron 40.0%
AGTTTGCAATGAGAATCCTC+TGG - chr5.3:72804715-72804734 MS.gene47679:CDS 40.0%
ATCTTTACCATGATGCACCT+AGG + chr5.3:72804592-72804611 None:intergenic 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG + chr5.3:72806089-72806108 None:intergenic 40.0%
ATGCGTGTCCTAGAAAGATA+CGG - chr5.3:72807049-72807068 MS.gene47679:intron 40.0%
ATGGATAGTCGTATCACTAG+AGG - chr5.3:72803721-72803740 MS.gene47679:CDS 40.0%
CAGAGTTATCCTCACAAGTA+CGG + chr5.3:72804775-72804794 None:intergenic 40.0%
CATATGTCACCATGTGGAAA+TGG + chr5.3:72804341-72804360 None:intergenic 40.0%
CCTATAGTTATGACGCAGTT+GGG - chr5.3:72806888-72806907 MS.gene47679:intron 40.0%
CGTGTGAGTATCATTACTCT+TGG + chr5.3:72803663-72803682 None:intergenic 40.0%
CTAAAGTGATAGGGTCTGAA+GGG - chr5.3:72806609-72806628 MS.gene47679:intron 40.0%
CTATCATTGCTGTACCTCTT+GGG - chr5.3:72806174-72806193 MS.gene47679:intron 40.0%
CTTCAGATTGAAGGTTTGTC+TGG + chr5.3:72803904-72803923 None:intergenic 40.0%
GAAACCGTGTTCAAGATGTT+TGG - chr5.3:72805471-72805490 MS.gene47679:intron 40.0%
GAAATGGGAATTTGTCCCAA+AGG + chr5.3:72804325-72804344 None:intergenic 40.0%
GAATCAAGTTCCACAAGAGT+TGG - chr5.3:72805009-72805028 MS.gene47679:intron 40.0%
GACAAATTCCCATTTCCACA+TGG - chr5.3:72804329-72804348 MS.gene47679:intron 40.0%
GAGGAGAGTAGATAAGATGA+TGG - chr5.3:72803702-72803721 MS.gene47679:CDS 40.0%
GCAACGAGTGTATTACATAC+AGG - chr5.3:72806974-72806993 MS.gene47679:intron 40.0%
GCTAATAATGACCTCAGTTC+TGG + chr5.3:72805278-72805297 None:intergenic 40.0%
GTAGTTGCTGAGACATCTTA+TGG - chr5.3:72806341-72806360 MS.gene47679:intron 40.0%
GTCAAACCAAACCATACCTT+TGG - chr5.3:72804306-72804325 MS.gene47679:intron 40.0%
GTGAAGGTGACTACTGAAAA+TGG - chr5.3:72806128-72806147 MS.gene47679:intron 40.0%
GTGGTATTTATGCAGAATGG+AGG - chr5.3:72805388-72805407 MS.gene47679:intron 40.0%
GTTATACATACCCTAGCCAA+GGG - chr5.3:72805959-72805978 MS.gene47679:intron 40.0%
TATCATTGCTGTACCTCTTG+GGG - chr5.3:72806175-72806194 MS.gene47679:intron 40.0%
TCAAATTCGTTGATGCAGGT+TGG - chr5.3:72805340-72805359 MS.gene47679:CDS 40.0%
TCACCGTCTGTTATTGTCAT+AGG - chr5.3:72803528-72803547 MS.gene47679:intron 40.0%
TCCTATAGTTATGACGCAGT+TGG - chr5.3:72806887-72806906 MS.gene47679:intron 40.0%
TCTTTCCAATCTGGAAGCTT+TGG + chr5.3:72806230-72806249 None:intergenic 40.0%
TGCATACTCTACTGGAACAA+TGG - chr5.3:72807009-72807028 MS.gene47679:intron 40.0%
TGTGTTCATATGTCACCATG+TGG + chr5.3:72804347-72804366 None:intergenic 40.0%
TGTTATACATACCCTAGCCA+AGG - chr5.3:72805958-72805977 MS.gene47679:intron 40.0%
TTACATACAGGGTCTGTTCA+TGG - chr5.3:72806986-72807005 MS.gene47679:intron 40.0%
TTCAGACCCTATCACTTTAG+AGG + chr5.3:72806609-72806628 None:intergenic 40.0%
TTGAAAGAAAGCCAGAACTG+AGG - chr5.3:72805264-72805283 MS.gene47679:intron 40.0%
TTGGCTAGGGTATGTATAAC+AGG + chr5.3:72805959-72805978 None:intergenic 40.0%
! ACAATGTGTGTCTTCGAGTT+TGG - chr5.3:72803960-72803979 MS.gene47679:CDS 40.0%
! ACACACATTGTGTATTGACG+TGG + chr5.3:72803951-72803970 None:intergenic 40.0%
! ATGAAGCATCATGAAGTGCA+CGG + chr5.3:72803581-72803600 None:intergenic 40.0%
! CAAGAGTTGGTTACAGAAGT+TGG - chr5.3:72805022-72805041 MS.gene47679:CDS 40.0%
! TAAGAGGTTCAGAGTGGATT+TGG - chr5.3:72806581-72806600 MS.gene47679:CDS 40.0%
! TAGGGGATATAATGGAGTGA+AGG - chr5.3:72806112-72806131 MS.gene47679:intron 40.0%
! TCTAAAGTGATAGGGTCTGA+AGG - chr5.3:72806608-72806627 MS.gene47679:intron 40.0%
! TGTGTGTCTGTTATTTGCTG+TGG - chr5.3:72804013-72804032 MS.gene47679:intron 40.0%
! TTCTTGTTTACATGCCTGCT+GGG - chr5.3:72806408-72806427 MS.gene47679:intron 40.0%
! TTTGTCCCAAAGGTATGGTT+TGG + chr5.3:72804315-72804334 None:intergenic 40.0%
!! GTGTGTCTGTTATTTGCTGT+GGG - chr5.3:72804014-72804033 MS.gene47679:intron 40.0%
!!! AGATCTGGTTTTAGGATCGT+GGG - chr5.3:72803098-72803117 MS.gene47679:CDS 40.0%
!!! AGGTCGTTCTTTTAGAATCC+CGG - chr5.3:72804513-72804532 MS.gene47679:intron 40.0%
!!! TAGATCTGGTTTTAGGATCG+TGG - chr5.3:72803097-72803116 MS.gene47679:CDS 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG - chr5.3:72804572-72804591 MS.gene47679:intron 40.0%
AACCTCTCATACAGACCATG+CGG + chr5.3:72806917-72806936 None:intergenic 45.0%
AAGCTGCCATTGCTGATATC+GGG - chr5.3:72806249-72806268 MS.gene47679:intron 45.0%
AAGGTTTGTCTGGCATACGA+GGG + chr5.3:72803894-72803913 None:intergenic 45.0%
AATGTCAAGACCCTTGGCTA+GGG + chr5.3:72805972-72805991 None:intergenic 45.0%
ACCTCTTTACCGTACTTGTG+AGG - chr5.3:72804763-72804782 MS.gene47679:intron 45.0%
ACTAATCCCAATTCCCGCAA+AGG - chr5.3:72802971-72802990 MS.gene47679:CDS 45.0%
AGGGCGACAAAGATAGTTAG+GGG - chr5.3:72806095-72806114 MS.gene47679:intron 45.0%
AGTCGTATCACTAGAGGTAG+AGG - chr5.3:72803727-72803746 MS.gene47679:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG - chr5.3:72805439-72805458 MS.gene47679:intron 45.0%
ATGGCAGCTTCTTTCCAATC+TGG + chr5.3:72806239-72806258 None:intergenic 45.0%
ATGGTCTGTATGAGAGGTTG+CGG - chr5.3:72806918-72806937 MS.gene47679:intron 45.0%
ATTTATGCAGAATGGAGGGC+TGG - chr5.3:72805393-72805412 MS.gene47679:intron 45.0%
CACGGTTTCTTCCAATTACC+TGG + chr5.3:72805460-72805479 None:intergenic 45.0%
CAGGGCGACAAAGATAGTTA+GGG - chr5.3:72806094-72806113 MS.gene47679:intron 45.0%
CCACTTAGTGGGATAAGACT+GGG - chr5.3:72803852-72803871 MS.gene47679:CDS 45.0%
CCCAACTGCGTCATAACTAT+AGG + chr5.3:72806891-72806910 None:intergenic 45.0%
CCGCCTATGACAATAACAGA+CGG + chr5.3:72803534-72803553 None:intergenic 45.0%
CCGTCTGTTATTGTCATAGG+CGG - chr5.3:72803531-72803550 MS.gene47679:intron 45.0%
CGGGAATAGGGTTTGAAAAG+TGG - chr5.3:72803254-72803273 MS.gene47679:intron 45.0%
CTAGGGTATGTATAACAGGC+AGG + chr5.3:72805955-72805974 None:intergenic 45.0%
CTAGTTCCCCGTATCTTTCT+AGG + chr5.3:72807060-72807079 None:intergenic 45.0%
CTCACCCTTCTCTATATACC+TGG - chr5.3:72805879-72805898 MS.gene47679:intron 45.0%
CTTAATCTTCACAAAGCGGC+AGG - chr5.3:72806377-72806396 MS.gene47679:intron 45.0%
CTTATCCCACTAAGTGGGAT+CGG + chr5.3:72803849-72803868 None:intergenic 45.0%
GAAGCTGCCATTGCTGATAT+CGG - chr5.3:72806248-72806267 MS.gene47679:intron 45.0%
GAGCAATTCTTCCTGTAACC+AGG + chr5.3:72805900-72805919 None:intergenic 45.0%
GCAGACAGATAATGTACGAC+AGG - chr5.3:72805196-72805215 MS.gene47679:intron 45.0%
GCAGGCATGTAAACAAGAAC+AGG + chr5.3:72806407-72806426 None:intergenic 45.0%
GCTATCATTGCTGTACCTCT+TGG - chr5.3:72806173-72806192 MS.gene47679:intron 45.0%
GGGAATTTGTCCCAAAGGTA+TGG + chr5.3:72804320-72804339 None:intergenic 45.0%
GTTCATGGTGCATACTCTAC+TGG - chr5.3:72807001-72807020 MS.gene47679:intron 45.0%
TAGCCAAGGGTCTTGACATT+CGG - chr5.3:72805972-72805991 MS.gene47679:intron 45.0%
TATGCGCTCTTCGATATGGA+GGG - chr5.3:72804986-72805005 MS.gene47679:intron 45.0%
TCAGGGCGACAAAGATAGTT+AGG - chr5.3:72806093-72806112 MS.gene47679:intron 45.0%
TCCTCACAAGTACGGTAAAG+AGG + chr5.3:72804767-72804786 None:intergenic 45.0%
TCTGTTATTGTCATAGGCGG+TGG - chr5.3:72803534-72803553 MS.gene47679:intron 45.0%
TGCGTGTCCTAGAAAGATAC+GGG - chr5.3:72807050-72807069 MS.gene47679:intron 45.0%
TTACAGGAAGAATTGCTCCC+TGG - chr5.3:72805902-72805921 MS.gene47679:intron 45.0%
TTAGAATCCCGGGATAGACT+TGG - chr5.3:72804524-72804543 MS.gene47679:intron 45.0%
TTGAGCCAAAGCTTCCAGAT+TGG - chr5.3:72806222-72806241 MS.gene47679:intron 45.0%
TTTGCTTTCAGTACCCCAAG+AGG + chr5.3:72806191-72806210 None:intergenic 45.0%
! AATCCTCTGGCTCCATTGAT+TGG - chr5.3:72804728-72804747 MS.gene47679:intron 45.0%
! AATTCGTTGATGCAGGTTGG+AGG - chr5.3:72805343-72805362 MS.gene47679:CDS 45.0%
! AGTTACCGGTGAAGAAGCAT+CGG + chr5.3:72806513-72806532 None:intergenic 45.0%
! ATCCTCTGGCTCCATTGATT+GGG - chr5.3:72804729-72804748 MS.gene47679:intron 45.0%
! ATTCGTTGATGCAGGTTGGA+GGG - chr5.3:72805344-72805363 MS.gene47679:CDS 45.0%
! CCAGTCTTATCCCACTAAGT+GGG + chr5.3:72803854-72803873 None:intergenic 45.0%
! GTGGACTGAGGATTCATGTA+TGG - chr5.3:72805572-72805591 MS.gene47679:intron 45.0%
! GTTCTTGTTTACATGCCTGC+TGG - chr5.3:72806407-72806426 MS.gene47679:intron 45.0%
! TGAAGCATCATGAAGTGCAC+GGG + chr5.3:72803580-72803599 None:intergenic 45.0%
! TTTCACACAAGGTGCTTCAG+TGG - chr5.3:72805369-72805388 MS.gene47679:CDS 45.0%
!! TGGTCATGGTCTTATGGTCA+GGG - chr5.3:72805925-72805944 MS.gene47679:intron 45.0%
!!! ATTTTTTACGCGGTGGACTG+AGG - chr5.3:72805560-72805579 MS.gene47679:CDS 45.0%
!!! CAACGTATTTTGGCCCAATG+TGG - chr5.3:72806307-72806326 MS.gene47679:intron 45.0%
!!! GGTCGTTCTTTTAGAATCCC+GGG - chr5.3:72804514-72804533 MS.gene47679:intron 45.0%
AACCGCATGGTCTGTATGAG+AGG - chr5.3:72806912-72806931 MS.gene47679:intron 50.0%
AAGGGTCTTGACATTCGGCT+GGG - chr5.3:72805977-72805996 MS.gene47679:intron 50.0%
ACCATAAGACCATGACCACC+AGG + chr5.3:72805923-72805942 None:intergenic 50.0%
ACTAAGTGGGATCGGCTACA+TGG + chr5.3:72803841-72803860 None:intergenic 50.0%
ACTCCCAGGAACTCCACATT+GGG + chr5.3:72806323-72806342 None:intergenic 50.0%
ACTGAACCCTCTTCCAACTC+TGG + chr5.3:72807094-72807113 None:intergenic 50.0%
AGCTGCCATTGCTGATATCG+GGG - chr5.3:72806250-72806269 MS.gene47679:intron 50.0%
ATAACAGACGGTGACCTTCG+AGG + chr5.3:72803522-72803541 None:intergenic 50.0%
ATGCGCTCTTCGATATGGAG+GGG - chr5.3:72804987-72805006 MS.gene47679:intron 50.0%
ATGTAGCCGATCCCACTTAG+TGG - chr5.3:72803840-72803859 MS.gene47679:CDS 50.0%
ATGTCTCAGCAACTACTCCC+AGG + chr5.3:72806337-72806356 None:intergenic 50.0%
ATGTTGATCAGCAGCCTCGA+AGG - chr5.3:72803505-72803524 MS.gene47679:intron 50.0%
ATTCCAGCCAGAGTTGGAAG+AGG - chr5.3:72807084-72807103 MS.gene47679:intron 50.0%
CAGCTATGCGCTCTTCGATA+TGG - chr5.3:72804982-72805001 MS.gene47679:intron 50.0%
CATGATGCACCTAGGTCAAC+AGG + chr5.3:72804584-72804603 None:intergenic 50.0%
CCATAAGACCATGACCACCA+GGG + chr5.3:72805922-72805941 None:intergenic 50.0%
CCCACTTAGTGGGATAAGAC+TGG - chr5.3:72803851-72803870 MS.gene47679:CDS 50.0%
CTATGCGCTCTTCGATATGG+AGG - chr5.3:72804985-72805004 MS.gene47679:intron 50.0%
CTGTTGACCTAGGTGCATCA+TGG - chr5.3:72804582-72804601 MS.gene47679:intron 50.0%
GAAGGTTTGTCTGGCATACG+AGG + chr5.3:72803895-72803914 None:intergenic 50.0%
GAATGTCAAGACCCTTGGCT+AGG + chr5.3:72805973-72805992 None:intergenic 50.0%
GCGTGTCCTAGAAAGATACG+GGG - chr5.3:72807051-72807070 MS.gene47679:intron 50.0%
TACTCCCAGGAACTCCACAT+TGG + chr5.3:72806324-72806343 None:intergenic 50.0%
TACTGGAACAATGGCTGCTG+AGG - chr5.3:72807018-72807037 MS.gene47679:intron 50.0%
TATTGTCATAGGCGGTGGCA+TGG - chr5.3:72803539-72803558 MS.gene47679:intron 50.0%
TCAGTATCTCGTGTCTCGGT+GGG - chr5.3:72806841-72806860 MS.gene47679:intron 50.0%
TCCAACCCCGATATCAGCAA+TGG + chr5.3:72806258-72806277 None:intergenic 50.0%
TGATACTCACACGTCGACAC+TGG - chr5.3:72803670-72803689 MS.gene47679:CDS 50.0%
TGGTCTGTATGAGAGGTTGC+GGG - chr5.3:72806919-72806938 MS.gene47679:intron 50.0%
TGTAGCCGATCCCACTTAGT+GGG - chr5.3:72803841-72803860 MS.gene47679:CDS 50.0%
TTCAGTATCTCGTGTCTCGG+TGG - chr5.3:72806840-72806859 MS.gene47679:intron 50.0%
TTCCAGCCAGAGTTGGAAGA+GGG - chr5.3:72807085-72807104 MS.gene47679:intron 50.0%
TTCTGCCACCAAGTCTATCC+CGG + chr5.3:72804535-72804554 None:intergenic 50.0%
TTGTTTACATGCCTGCTGGG+CGG - chr5.3:72806411-72806430 MS.gene47679:intron 50.0%
! CCCAGTCTTATCCCACTAAG+TGG + chr5.3:72803855-72803874 None:intergenic 50.0%
! TTCGTTGATGCAGGTTGGAG+GGG - chr5.3:72805345-72805364 MS.gene47679:CDS 50.0%
!! GGTCATGGTCTTATGGTCAG+GGG - chr5.3:72805926-72805945 MS.gene47679:intron 50.0%
!! GTGGTCATGGTCTTATGGTC+AGG - chr5.3:72805924-72805943 MS.gene47679:intron 50.0%
!! GTTACCGGTGAAGAAGCATC+GGG + chr5.3:72806512-72806531 None:intergenic 50.0%
AACCCTCTTCCAACTCTGGC+TGG + chr5.3:72807090-72807109 None:intergenic 55.0%
AGGGTCTTGACATTCGGCTG+GGG - chr5.3:72805978-72805997 MS.gene47679:intron 55.0%
AGTCCCAGCCTCCCAATCAA+TGG + chr5.3:72804743-72804762 None:intergenic 55.0%
CAAGGGTCTTGACATTCGGC+TGG - chr5.3:72805976-72805995 MS.gene47679:intron 55.0%
CAGCCGAATGTCAAGACCCT+TGG + chr5.3:72805978-72805997 None:intergenic 55.0%
CAGGAAGAATTGCTCCCTGG+TGG - chr5.3:72805905-72805924 MS.gene47679:intron 55.0%
CAGTATCTCGTGTCTCGGTG+GGG - chr5.3:72806842-72806861 MS.gene47679:intron 55.0%
CCTTCCCGATGCTTCTTCAC+CGG - chr5.3:72806505-72806524 MS.gene47679:CDS 55.0%
CTCCCAATCAATGGAGCCAG+AGG + chr5.3:72804734-72804753 None:intergenic 55.0%
GAATCCCGGGATAGACTTGG+TGG - chr5.3:72804527-72804546 MS.gene47679:intron 55.0%
GAATTGCTCCCTGGTGGTCA+TGG - chr5.3:72805911-72805930 MS.gene47679:intron 55.0%
GCCATTGCTGATATCGGGGT+TGG - chr5.3:72806254-72806273 MS.gene47679:intron 55.0%
GTTGGAGGGGCTTTCACACA+AGG - chr5.3:72805358-72805377 MS.gene47679:CDS 55.0%
TCTGCCACCAAGTCTATCCC+GGG + chr5.3:72804534-72804553 None:intergenic 55.0%
TGGCCCAATGTGGAGTTCCT+GGG - chr5.3:72806317-72806336 MS.gene47679:intron 55.0%
TTGGCCCAATGTGGAGTTCC+TGG - chr5.3:72806316-72806335 MS.gene47679:intron 55.0%
! CCCTGGTGGTCATGGTCTTA+TGG - chr5.3:72805919-72805938 MS.gene47679:intron 55.0%
! CTCTGGCTCCATTGATTGGG+AGG - chr5.3:72804732-72804751 MS.gene47679:intron 55.0%
! GCTCCATTGATTGGGAGGCT+GGG - chr5.3:72804737-72804756 MS.gene47679:intron 55.0%
! GTGTCTTCGAGTTTGGCTCG+TGG - chr5.3:72803967-72803986 MS.gene47679:CDS 55.0%
CAATGGCTGCTGAGGACTGC+AGG - chr5.3:72807026-72807045 MS.gene47679:intron 60.0%
GACGCAGTTGGGAAACCGCA+TGG - chr5.3:72806899-72806918 MS.gene47679:intron 60.0%
TCATAGGCGGTGGCATGGCT+GGG - chr5.3:72803544-72803563 MS.gene47679:intron 60.0%
TTGACATTCGGCTGGGGCAC+AGG - chr5.3:72805984-72806003 MS.gene47679:intron 60.0%
! GGCTCCATTGATTGGGAGGC+TGG - chr5.3:72804736-72804755 MS.gene47679:intron 60.0%
!! CCGGTGAAGAAGCATCGGGA+AGG + chr5.3:72806508-72806527 None:intergenic 60.0%
GTCATAGGCGGTGGCATGGC+TGG - chr5.3:72803543-72803562 MS.gene47679:intron 65.0%
TTACATGCCTGCTGGGCGGC+TGG - chr5.3:72806415-72806434 MS.gene47679:intron 65.0%
TCTTTGGCCAGCCGCCCAGC+AGG + chr5.3:72806425-72806444 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 72802953 72807141 72802953 ID=MS.gene47679
chr5.3 mRNA 72802953 72807141 72802953 ID=MS.gene47679.t1;Parent=MS.gene47679
chr5.3 exon 72807102 72807141 72807102 ID=MS.gene47679.t1.exon1;Parent=MS.gene47679.t1
chr5.3 CDS 72807102 72807141 72807102 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72806489 72806604 72806489 ID=MS.gene47679.t1.exon2;Parent=MS.gene47679.t1
chr5.3 CDS 72806489 72806604 72806489 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72805491 72805579 72805491 ID=MS.gene47679.t1.exon3;Parent=MS.gene47679.t1
chr5.3 CDS 72805491 72805579 72805491 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72805275 72805388 72805275 ID=MS.gene47679.t1.exon4;Parent=MS.gene47679.t1
chr5.3 CDS 72805275 72805388 72805275 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72805022 72805109 72805022 ID=MS.gene47679.t1.exon5;Parent=MS.gene47679.t1
chr5.3 CDS 72805022 72805109 72805022 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72804809 72804894 72804809 ID=MS.gene47679.t1.exon6;Parent=MS.gene47679.t1
chr5.3 CDS 72804809 72804894 72804809 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72804634 72804736 72804634 ID=MS.gene47679.t1.exon7;Parent=MS.gene47679.t1
chr5.3 CDS 72804634 72804736 72804634 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72804089 72804186 72804089 ID=MS.gene47679.t1.exon8;Parent=MS.gene47679.t1
chr5.3 CDS 72804089 72804186 72804089 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72803568 72803997 72803568 ID=MS.gene47679.t1.exon9;Parent=MS.gene47679.t1
chr5.3 CDS 72803568 72803997 72803568 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
chr5.3 exon 72802953 72803255 72802953 ID=MS.gene47679.t1.exon10;Parent=MS.gene47679.t1
chr5.3 CDS 72802953 72803255 72802953 ID=cds.MS.gene47679.t1;Parent=MS.gene47679.t1
Gene Sequence

>MS.gene47679

ATGGAGTCACGAATTAAGACTAATCCCAATTCCCGCAAAGGTTCATTTTTTAACTATCCTCTTTTCATTTTTTATTTTGGTTTATAAATGTTTATGCTTTTTTTTTTTGTTCTGAATTTGGTAATAATTTATTTGATTAGATTATAGATCTGGTTTTAGGATCGTGGGCTTTAATTTCGCTATTTTTACTCCTAATTGATCAAATTTCCAATTTTTATGATCAGGATATTTTTTATACATTCCTAATTGATTAAATTTCTAATTTTTATGATCAGGGTATTTTTTATATATTGGTAAAAAACGGGAATAGGGTTTGAAAAGTGGAAAAAAAAAAGTGATAAATCATTTGGGTCGTTGTCATCATAGAATCTGATAAATGATGAATAATTCAAAGAGTTGTATTGGTTTGTTTCTAATAGAGATTTGATGTGTTTTTGTGTCTGATAATTGTGTTTTTTTTGACATGTTTTGGTTCTATTTATGCGTTTATGTTTGTTATTGACTTTGATTTTTATTGTTGTTGTACTGTCTATGTAGGTTTGTGCTATGTCAATGTTGATCAGCAGCCTCGAAGGTCACCGTCTGTTATTGTCATAGGCGGTGGCATGGCTGGGATTGCTGCTGCCCGTGCACTTCATGATGCTTCATTTCAGGTATTCAAGCAAATGATATAGCTGATAACTTTATTTTACTTACTATTCAGTTTGCCAAGAGTAATGATACTCACACGTCGACACTGGTAATAATTTGAGGAGAGTAGATAAGATGATGGATAGTCGTATCACTAGAGGTAGAGGAAGACCTAGATAAACTATGAGGGAAACTATTAAGAAAGATCTAAAGATTAATGTATTGGATCGAAATATAGTTTATGGCGTAATTTATCCATGTAGCCGATCCCACTTAGTGGGATAAGACTGGGTCGTTGTTGCTTGTGTCCCTCGTATGCCAGACAAACCTTCAATCTGAAGTGTCAGTGTTTTATAGATTACATGCCACGTCAATACACAATGTGTGTCTTCGAGTTTGGCTCGTGGCTATATGAATATGACTACAATTATGTGTGTCTGTTATTTGCTGTGGGTTGTTAGTTATGTCTACTAATTGAAGATTGAAGATGATTAAGAATTAAATGTCCTGTACATGTAACTTAAGTTTAATGCTAATTGCAATCTATTTCATTGGAAATATTTGCAACTCATTTATGATTGCGATTGTTGTATTTTGGTTCAATAGGTTATCTTAAAGTAAAAGTAGCTTGTTTAAAACCATTTTATGCTATCTTGGGTTATACAACTTCACTTGGTTGCTTTGTTAGAGTTTAAAATTGGATTTGACTGTTTTTGTACTTTAGTCAAACCAAACCATACCTTTGGGACAAATTCCCATTTCCACATGGTGACATATGAACACACATATATTTAGCTAATGAAGAGAGACACCATCTCCTTTAATTATTTTGTTTTTCCTCTTCTTCTCATTTAAACATTCGTACTTTTGTATCTATCAGCTCCTTTATTTGTATTGAGAGTTGTACTGAAGTTCACTACTTTTTTGTTCAGGTCGTTCTTTTAGAATCCCGGGATAGACTTGGTGGCAGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTAGGTGCATCATGGTAAAGATTATACTCTTTTTATTCTGATTTTTTCATGTTGACAAAAACGCAAGATTTCTTTCTTTTTTATTTTAGCATTGAAAGTGGCTGATTATGATTCAGGTTGCATGGAGTTTGCAATGAGAATCCTCTGGCTCCATTGATTGGGAGGCTGGGACTACCTCTTTACCGTACTTGTGAGGATAACTCTGTCCTATACGATCATGATTTGGAAAGGTAAATGCATTTTTTGTTATTATTTGGTAGTAGTTATCGATTTCTTCTGTGCTTTTGTAAGTAATTAACGACTACATTGAATGCTTCAATCTTTCCTATGGTCATCTTGAATGGTATATTATTTGATATGGGATTCTTTGATTCAAAGTTGTCAACTTTTTACAGCTATGCGCTCTTCGATATGGAGGGGAATCAAGTTCCACAAGAGTTGGTTACAGAAGTTGGTAAAACATTTGAAATGATTTTGCAAGAGGTATGTCATTTGTTTATTTGCAAGAGTTAATTGAAATCGCAATTTTTTTTTAATTGAAATCGCAAATGTTTGAGTCAACTTGTTTACAATGAGCATCTCATCTAACAATTGACATTTATTAATGCAGACAGATAATGTACGACAGGAATTCAGCGAAGACATGTCCATTCTTCGTGCACTTTCAATTGTTTTTGAAAGAAAGCCAGAACTGAGGTCATTATTAGCATAAAACTCAAATTCGTTGACCACCATTCATTTTATCAAAACTCAAATTCGTTGATGCAGGTTGGAGGGGCTTTCACACAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGATTCTATATCACTGAAATGTTGGGACCAGGTAATTGGAAGAAACCGTGTTCAAGATGTTTGGGGTTCTATTATTTGTATTGTCTATTTCAAGTTTATGTCATTGAAATTTAAGTTGCATTACATAAATATTTTTTACGCGGTGGACTGAGGATTCATGTATGGTTTTTCCATTTCAGTTCTTTGTCCTTGTTGATCTTTTTTATTAGACACATTATTGAAGGACACAATTATTAAGTGGCAAGTTCTTATTTATACACTATTGGTTTGAGTTTTAGGTTAAATGTTAATGATATGCCATTTGTACCGGCTTTTATTGAGGATATTATAATATTTGATGTAAGGGATATAAAAATGAGATTAATAAGTGACTCCGTATGGTTTCATATACTCACATTATGTTGCGAGTAACTTGTAATCACTATGTGCATTAACATTTTGATGTGTAACTCACCCTTCTCTATATACCTGGTTACAGGAAGAATTGCTCCCTGGTGGTCATGGTCTTATGGTCAGGGGATACCTGCCTGTTATACATACCCTAGCCAAGGGTCTTGACATTCGGCTGGGGCACAGGTATATATTTGTTTGAAGTTTTGTTTTGGAAGTCTTTGTCCTGTTTTGTTGGTTTACCAAACTAACTGGCTTTGATGATACCTATTTTCAGGGCGACAAAGATAGTTAGGGGATATAATGGAGTGAAGGTGACTACTGAAAATGGGAAAACATTTGTTGCTGACGCTGCTATCATTGCTGTACCTCTTGGGGTACTGAAAGCAAATGTAATCAAATTTGAGCCAAAGCTTCCAGATTGGAAAGAAGCTGCCATTGCTGATATCGGGGTTGGAGTTGAGAATAAAATAATTTTACACTTCAACAACGTATTTTGGCCCAATGTGGAGTTCCTGGGAGTAGTTGCTGAGACATCTTATGGATGCAGCTACTTTCTTAATCTTCACAAAGCGGCAGGTCATCCTGTTCTTGTTTACATGCCTGCTGGGCGGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCTAACTTTGCTTTCACACAACTCAAGAAGATCCTTCCCGATGCTTCTTCACCGGTAACTATAATAGTTTTAAATATATTTAACTTGTTTTTTACAATGGAATAAAAGTAAGAGGTTCAGAGTGGATTTGGTTCCTCTAAAGTGATAGGGTCTGAAGGGTGCATTTTAGAAGATAAAGTGTGGGATTGAAACTAATTGATTAGAAAAATTATCACTTGCATTTTACTTTCTAATGTGTACTGTCTAGTTTAGAGGAGTGAAATCTCTTGAACCATGTTTTGTAGGCTACAGAATCTTTAAAATTGAATCCATTTATGTTTCTGTGCATAGCTATATGGCTGAATTGAGTTTGTTTCCTTTATGCAGATTCAGTATCTCGTGTCTCGGTGGGGTACAGATATTAATTCACTAGGTTCCTATAGTTATGACGCAGTTGGGAAACCGCATGGTCTGTATGAGAGGTTGCGGGTTCCTGTAGATAACTTATTCTTTGCAGGGGAAGCAACGAGTGTATTACATACAGGGTCTGTTCATGGTGCATACTCTACTGGAACAATGGCTGCTGAGGACTGCAGGATGCGTGTCCTAGAAAGATACGGGGAACTAGATATATTCCAGCCAGAGTTGGAAGAGGGTTCAGTCATTCCACTTCTGATATCTCGTATTTGA

Protein sequence

>MS.gene47679.t1

MESRIKTNPNSRKGLCYVNVDQQPRRSPSVIVIGGGMAGIAAARALHDASFQVVLLESRDRLGGRIHTDYSFGFPVDLGASWLHGVCNENPLAPLIGRLGLPLYRTCEDNSVLYDHDLESYALFDMEGNQVPQELVTEVGKTFEMILQETDNVRQEFSEDMSILRALSIVFERKPELRLEGLSHKVLQWYLCRMEGWFAADSDSISLKCWDQEELLPGGHGLMVRGYLPVIHTLAKGLDIRLGHRATKIVRGYNGVKVTTENGKTFVADAAIIAVPLGVLKANVIKFEPKLPDWKEAAIADIGVGVENKIILHFNNVFWPNVEFLGVVAETSYGCSYFLNLHKAAGHPVLVYMPAGRLAKDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSRWGTDINSLGSYSYDAVGKPHGLYERLRVPVDNLFFAGEATSVLHTGSVHGAYSTGTMAAEDCRMRVLERYGELDIFQPELEEGSVIPLLISRI