AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46317


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46317.t1 MTR_5g090300 98.975 488 5 0 1 488 1 488 0.0 999
MS.gene46317.t1 MTR_3g449620 83.469 490 79 1 1 488 1 490 0.0 818
MS.gene46317.t1 MTR_3g064370 64.634 492 170 1 1 488 1 492 0.0 658
MS.gene46317.t1 MTR_3g064370 65.060 415 141 1 78 488 1 415 0.0 563
MS.gene46317.t1 MTR_3g064370 67.609 389 126 0 1 389 1 389 0.0 555
MS.gene46317.t1 MTR_1g023510 34.737 475 260 12 30 454 867 1341 4.59e-67 234
MS.gene46317.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 7.44e-67 234
MS.gene46317.t1 MTR_3g113170 34.298 484 273 12 30 476 883 1358 9.63e-67 233
MS.gene46317.t1 MTR_5g087920 76.000 125 30 0 280 404 12 136 6.29e-60 193
MS.gene46317.t1 MTR_6g084700 34.904 467 261 15 29 467 221 672 3.89e-55 197
MS.gene46317.t1 MTR_3g055090 32.373 451 259 13 29 454 160 589 1.74e-53 192
MS.gene46317.t1 MTR_8g464450 31.938 454 257 15 29 454 163 592 1.92e-42 161
MS.gene46317.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 2.46e-41 158
MS.gene46317.t1 MTR_1g050535 30.716 433 266 12 44 456 225 643 3.04e-41 158
MS.gene46317.t1 MTR_2g039160 26.715 554 287 18 26 472 4 545 2.63e-33 132
MS.gene46317.t1 MTR_3g033000 28.009 432 265 15 53 458 33 444 1.39e-30 124
MS.gene46317.t1 MTR_3g033000 27.586 377 231 14 53 407 33 389 8.73e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46317.t1 AT2G43020 78.776 490 102 2 1 488 1 490 0.0 788
MS.gene46317.t1 AT3G59050 78.367 490 102 3 1 488 1 488 0.0 781
MS.gene46317.t1 AT1G65840 62.474 477 171 2 20 488 21 497 0.0 630
MS.gene46317.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene46317.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene46317.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene46317.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene46317.t1 AT4G16310 34.280 493 242 15 30 454 620 1098 1.19e-64 227
MS.gene46317.t1 AT1G62830 34.475 467 271 14 28 473 266 718 1.27e-54 196
MS.gene46317.t1 AT3G10390 32.700 474 264 15 14 456 169 618 5.24e-50 183
MS.gene46317.t1 AT3G10390 33.333 474 261 16 14 456 169 618 1.01e-49 182
MS.gene46317.t1 AT3G13682 33.966 474 254 14 17 454 140 590 1.09e-49 181
MS.gene46317.t1 AT3G10390 32.700 474 264 15 14 456 221 670 1.39e-49 182
MS.gene46317.t1 AT3G10390 33.333 474 261 16 14 456 221 670 1.47e-49 182
MS.gene46317.t1 AT5G13700 28.125 448 263 15 53 475 30 443 2.54e-34 134
MS.gene46317.t1 AT4G29720 23.766 547 290 13 26 465 3 529 3.10e-34 135

Find 152 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTTCAACAACGTATTT+TGG 0.147701 5.4:-71351048 MS.gene46317:CDS
CTAGTTCCCCGTATCTTTCT+AGG 0.225042 5.4:+71350273 None:intergenic
CCCTGGTGGTCATGGTCTTA+TGG 0.250033 5.4:-71351426 MS.gene46317:CDS
GTAGATAACTTATTCTTTGC+AGG 0.258142 5.4:-71350383 MS.gene46317:CDS
ACTTCATGATGCTTCATTTC+AGG 0.276706 5.4:-71353872 MS.gene46317:intron
TTGGCCCAATGTGGAGTTCC+TGG 0.277098 5.4:-71351029 MS.gene46317:CDS
GGCTCCATTGATTGGGAGGC+TGG 0.279036 5.4:-71352609 MS.gene46317:CDS
GATAATAATGACCTCAGTTC+TGG 0.301513 5.4:+71352070 None:intergenic
GTCATAGGCGGTGGCATGGC+TGG 0.307377 5.4:-71353913 MS.gene46317:CDS
CTATCATTGCTGTACCTCTT+GGG 0.307858 5.4:-71351171 MS.gene46317:CDS
TCAGGGCGACAAAGATAGTT+AGG 0.311809 5.4:-71351252 MS.gene46317:intron
TCTTTCCAATCTGGAAGCTT+TGG 0.318953 5.4:+71351118 None:intergenic
CAGCTATGCGCTCTTCGATA+TGG 0.322933 5.4:-71352363 MS.gene46317:CDS
ATTCACACTGATTACTCATT+TGG 0.325638 5.4:-71352791 MS.gene46317:CDS
GCTATCATTGCTGTACCTCT+TGG 0.347891 5.4:-71351172 MS.gene46317:CDS
AATCCTCTGGCTCCATTGAT+TGG 0.348932 5.4:-71352617 MS.gene46317:CDS
GAAGCTGCCATTGCTGATAT+CGG 0.349601 5.4:-71351097 MS.gene46317:CDS
GTGAAGGTGACTACTGAAAA+TGG 0.357159 5.4:-71351217 MS.gene46317:CDS
AAGATAGTTAGGGGATATAA+TGG 0.370197 5.4:-71351241 MS.gene46317:CDS
GTTCTTGTTTACATGCCTGC+TGG 0.371256 5.4:-71350938 MS.gene46317:CDS
TTACATGCCTGCTGGGCGGC+TGG 0.383621 5.4:-71350930 MS.gene46317:CDS
ATGGCAGCTTCTTTCCAATC+TGG 0.384672 5.4:+71351109 None:intergenic
ATTCTATATCACTGAAATGT+TGG 0.387439 5.4:-71351913 MS.gene46317:CDS
GTGGTCATGGTCTTATGGTC+AGG 0.387478 5.4:-71351421 MS.gene46317:CDS
TGTCCTATACGATCATGATT+TGG 0.402825 5.4:-71352552 MS.gene46317:CDS
TTGGCTAGGGTATGTATAAC+AGG 0.405023 5.4:+71351389 None:intergenic
GTAGTTGCTGAGACATCTTA+TGG 0.410548 5.4:-71351004 MS.gene46317:CDS
TCACCGTCTGTTATTGTCAT+AGG 0.417890 5.4:-71353928 MS.gene46317:CDS
TCTTTGGCCAGCCGCCCAGC+AGG 0.424805 5.4:+71350923 None:intergenic
CAAGGGTCTTGACATTCGGC+TGG 0.431094 5.4:-71351369 MS.gene46317:CDS
ATCCTCTGGCTCCATTGATT+GGG 0.431803 5.4:-71352616 MS.gene46317:CDS
TTGAGCCAAAGCTTCCAGAT+TGG 0.433940 5.4:-71351123 MS.gene46317:CDS
AATTGAAAGTGCACGAAGAA+TGG 0.438137 5.4:+71352108 None:intergenic
CCTATAGTTATGACGCAGTT+GGG 0.440336 5.4:-71350442 MS.gene46317:CDS
AAGCTGCCATTGCTGATATC+GGG 0.442969 5.4:-71351096 MS.gene46317:CDS
GAATTGCTCCCTGGTGGTCA+TGG 0.446683 5.4:-71351434 MS.gene46317:CDS
TTTCCAAATCATGATCGTAT+AGG 0.448434 5.4:+71352549 None:intergenic
CATGATGCACCTAGGTCAAC+AGG 0.448585 5.4:+71352764 None:intergenic
TTCTATATCACTGAAATGTT+GGG 0.449054 5.4:-71351912 MS.gene46317:CDS
TTCTTGTTTACATGCCTGCT+GGG 0.453430 5.4:-71350937 MS.gene46317:CDS
CAAGAGTTGGTTACAGAAGT+TGG 0.457743 5.4:-71352323 MS.gene46317:CDS
CAGGGCGACAAAGATAGTTA+GGG 0.457896 5.4:-71351251 MS.gene46317:CDS
TGGCCCAATGTGGAGTTCCT+GGG 0.459578 5.4:-71351028 MS.gene46317:CDS
GCTCCATTGATTGGGAGGCT+GGG 0.462828 5.4:-71352608 MS.gene46317:CDS
TTGACATTCGGCTGGGGCAC+AGG 0.462919 5.4:-71351361 MS.gene46317:intron
GCAGGCATGTAAACAAGAAC+AGG 0.463011 5.4:+71350941 None:intergenic
AACCCTCTTCCAACTCTGGC+TGG 0.467559 5.4:+71350243 None:intergenic
TTACATACAGGGTCTGTTCA+TGG 0.475124 5.4:-71350344 MS.gene46317:CDS
TCAGTATCTCGTGTCTCGGT+GGG 0.475314 5.4:-71350489 MS.gene46317:CDS
CCCAACTGCGTCATAACTAT+AGG 0.475903 5.4:+71350442 None:intergenic
GCAAAGAATAAGTTATCTAC+AGG 0.484780 5.4:+71350386 None:intergenic
CAATGGCTGCTGAGGACTGC+AGG 0.485843 5.4:-71350304 MS.gene46317:CDS
GTTCATGGTGCATACTCTAC+TGG 0.488310 5.4:-71350329 MS.gene46317:CDS
GCAACGAGTGTATTACATAC+AGG 0.492456 5.4:-71350356 MS.gene46317:CDS
TTCTGCCACCAAGTCTATCC+CGG 0.493984 5.4:+71352813 None:intergenic
AGTCCCAGCCTCCCAATCAA+TGG 0.497011 5.4:+71352605 None:intergenic
TGGTCATGGTCTTATGGTCA+GGG 0.502310 5.4:-71351420 MS.gene46317:CDS
TAGATAACTTATTCTTTGCA+GGG 0.507097 5.4:-71350382 MS.gene46317:CDS
GCCATTGCTGATATCGGGGT+TGG 0.507133 5.4:-71351091 MS.gene46317:CDS
ACTAATCCCAATTCACGAAA+AGG 0.507602 5.4:-71354482 MS.gene46317:intron
TTCGTTGATGCAGGTTGGAG+GGG 0.509332 5.4:-71352000 MS.gene46317:intron
CTGTTGACCTAGGTGCATCA+TGG 0.509864 5.4:-71352763 MS.gene46317:intron
CTTAATCTTCACAAAGCGGC+AGG 0.511464 5.4:-71350968 MS.gene46317:CDS
TAGCCAAGGGTCTTGACATT+CGG 0.512251 5.4:-71351373 MS.gene46317:CDS
CTCTGGCTCCATTGATTGGG+AGG 0.513671 5.4:-71352613 MS.gene46317:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.515557 5.4:-71351960 MS.gene46317:CDS
TGCGTGTCCTAGAAAGATAC+GGG 0.517425 5.4:-71350280 MS.gene46317:CDS
TCCTATAGTTATGACGCAGT+TGG 0.517976 5.4:-71350443 MS.gene46317:CDS
TCATAGGCGGTGGCATGGCT+GGG 0.518133 5.4:-71353912 MS.gene46317:CDS
ACTGAACCCTCTTCCAACTC+TGG 0.519154 5.4:+71350239 None:intergenic
ACCATAAGACCATGACCACC+AGG 0.519331 5.4:+71351425 None:intergenic
TGGTCTGTATGAGAGGTTGC+GGG 0.523316 5.4:-71350411 MS.gene46317:CDS
CAGCCGAATGTCAAGACCCT+TGG 0.525666 5.4:+71351370 None:intergenic
ATGCGTGTCCTAGAAAGATA+CGG 0.527553 5.4:-71350281 MS.gene46317:CDS
ACTCCCAGGAACTCCACATT+GGG 0.528892 5.4:+71351025 None:intergenic
TCTGTTATTGTCATAGGCGG+TGG 0.531300 5.4:-71353922 MS.gene46317:CDS
ATGGTCTGTATGAGAGGTTG+CGG 0.532017 5.4:-71350412 MS.gene46317:CDS
ATTCGTTGATGCAGGTTGGA+GGG 0.533554 5.4:-71352001 MS.gene46317:intron
CAAATACGAGATATCAGAAG+TGG 0.533727 5.4:+71350212 None:intergenic
CCTTCCCGATGCTTCTTCAC+CGG 0.535712 5.4:-71350840 MS.gene46317:intron
GAATCAAGTTCCACAAGAGT+TGG 0.536968 5.4:-71352336 MS.gene46317:CDS
TGAAGGTGACTACTGAAAAT+GGG 0.540274 5.4:-71351216 MS.gene46317:CDS
AAGGGTCTTGACATTCGGCT+GGG 0.542089 5.4:-71351368 MS.gene46317:CDS
ATAACAGACGGTGACCTTCG+AGG 0.542275 5.4:+71353937 None:intergenic
AATTCGTTGATGCAGGTTGG+AGG 0.542488 5.4:-71352002 MS.gene46317:intron
ATTTATGCAGAATGGAGGGC+TGG 0.545277 5.4:-71351952 MS.gene46317:CDS
AGATATATTCCAGCCAGAGT+TGG 0.546397 5.4:-71350252 MS.gene46317:CDS
TTAGAATCCCGGGATAGACT+TGG 0.547928 5.4:-71352821 MS.gene46317:CDS
AGGGTCTTGACATTCGGCTG+GGG 0.550051 5.4:-71351367 MS.gene46317:CDS
TACTGGAACAATGGCTGCTG+AGG 0.550086 5.4:-71350312 MS.gene46317:CDS
CTATGCGCTCTTCGATATGG+AGG 0.552749 5.4:-71352360 MS.gene46317:CDS
TTCAGTATCTCGTGTCTCGG+TGG 0.557308 5.4:-71350490 MS.gene46317:CDS
TGCATACTCTACTGGAACAA+TGG 0.558563 5.4:-71350321 MS.gene46317:CDS
GAATGTCAAGACCCTTGGCT+AGG 0.558837 5.4:+71351375 None:intergenic
GAATCCCGGGATAGACTTGG+TGG 0.558858 5.4:-71352818 MS.gene46317:CDS
GTTGGAGGGGCTTTCACACA+AGG 0.559617 5.4:-71351987 MS.gene46317:CDS
AGTTACCGGTGAAGAAGCAT+CGG 0.560061 5.4:+71350835 None:intergenic
TACTCCCAGGAACTCCACAT+TGG 0.560675 5.4:+71351024 None:intergenic
GCAGACAGATAATGTACGAC+AGG 0.565366 5.4:-71352149 MS.gene46317:intron
CAGAGTTATCCTCACAAGTA+CGG 0.566480 5.4:+71352573 None:intergenic
TCCTCACAAGTACGGTAAAG+AGG 0.571437 5.4:+71352581 None:intergenic
AATGTCAAGACCCTTGGCTA+GGG 0.571742 5.4:+71351376 None:intergenic
TTTCACACAAGGTGCTTCAG+TGG 0.575044 5.4:-71351976 MS.gene46317:CDS
TAGGGGATATAATGGAGTGA+AGG 0.576412 5.4:-71351233 MS.gene46317:CDS
TGAAGCATCATGAAGTGCAC+GGG 0.579978 5.4:+71353879 None:intergenic
ATTCCAGCCAGAGTTGGAAG+AGG 0.581520 5.4:-71350246 MS.gene46317:CDS
AACCGCATGGTCTGTATGAG+AGG 0.584210 5.4:-71350418 MS.gene46317:CDS
CTAGGGTATGTATAACAGGC+AGG 0.584240 5.4:+71351393 None:intergenic
ATGTCTCAGCAACTACTCCC+AGG 0.584539 5.4:+71351011 None:intergenic
ACCTCTTTACCGTACTTGTG+AGG 0.587430 5.4:-71352582 MS.gene46317:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 5.4:-71351957 MS.gene46317:CDS
ATGAAGCATCATGAAGTGCA+CGG 0.590616 5.4:+71353878 None:intergenic
ATCACTGAAATGTTGGGACC+AGG 0.592003 5.4:-71351906 MS.gene46317:intron
GACGCAGTTGGGAAACCGCA+TGG 0.594696 5.4:-71350431 MS.gene46317:CDS
ATGTTGATCAGCAGCCTCGA+AGG 0.595305 5.4:-71353951 MS.gene46317:CDS
TCTGCCACCAAGTCTATCCC+GGG 0.596007 5.4:+71352814 None:intergenic
AGGGCGACAAAGATAGTTAG+GGG 0.596239 5.4:-71351250 MS.gene46317:CDS
TGTTATACATACCCTAGCCA+AGG 0.597299 5.4:-71351387 MS.gene46317:CDS
TATACGATCATGATTTGGAA+AGG 0.602711 5.4:-71352547 MS.gene46317:intron
GTTACCGGTGAAGAAGCATC+GGG 0.603982 5.4:+71350836 None:intergenic
CTCCCAATCAATGGAGCCAG+AGG 0.605374 5.4:+71352614 None:intergenic
TATCATTGCTGTACCTCTTG+GGG 0.605759 5.4:-71351170 MS.gene46317:CDS
GGTACAGATATTAATTCACT+AGG 0.607199 5.4:-71350467 MS.gene46317:CDS
CAACGAGTGTATTACATACA+GGG 0.607621 5.4:-71350355 MS.gene46317:CDS
TTACAGGAAGAATTGCTCCC+TGG 0.609122 5.4:-71351443 MS.gene46317:intron
AGATTCAGTATCTCGTGTCT+CGG 0.611152 5.4:-71350493 MS.gene46317:CDS
TGATTATGATTCAGGTTGCA+TGG 0.611159 5.4:-71352653 MS.gene46317:intron
TATGCGCTCTTCGATATGGA+GGG 0.614704 5.4:-71352359 MS.gene46317:CDS
TTCCAGCCAGAGTTGGAAGA+GGG 0.614724 5.4:-71350245 MS.gene46317:CDS
AGTTTGCAATGAGAATCCTC+TGG 0.615479 5.4:-71352630 MS.gene46317:CDS
TGGTATTTATGCAGAATGGA+GGG 0.621034 5.4:-71351956 MS.gene46317:CDS
TATTGTCATAGGCGGTGGCA+TGG 0.626229 5.4:-71353917 MS.gene46317:CDS
TCCAACCCCGATATCAGCAA+TGG 0.632597 5.4:+71351090 None:intergenic
GGTCATGGTCTTATGGTCAG+GGG 0.639940 5.4:-71351419 MS.gene46317:CDS
AGCTGCCATTGCTGATATCG+GGG 0.641150 5.4:-71351095 MS.gene46317:CDS
CCGTCTGTTATTGTCATAGG+CGG 0.645271 5.4:-71353925 MS.gene46317:CDS
ACTTCTGTAACCAACTCTTG+TGG 0.651673 5.4:+71352326 None:intergenic
CCGGTGAAGAAGCATCGGGA+AGG 0.655055 5.4:+71350840 None:intergenic
ATCTTTACCATGATGCACCT+AGG 0.655995 5.4:+71352756 None:intergenic
CAGTATCTCGTGTCTCGGTG+GGG 0.656943 5.4:-71350488 MS.gene46317:CDS
TTGAAAGAAAGCCAGAACTG+AGG 0.657435 5.4:-71352081 MS.gene46317:intron
TTTGCTTTCAGTACCCCAAG+AGG 0.665152 5.4:+71351157 None:intergenic
CTTTCTTAATCTTCACAAAG+CGG 0.672988 5.4:-71350972 MS.gene46317:CDS
CAGGAAGAATTGCTCCCTGG+TGG 0.673379 5.4:-71351440 MS.gene46317:CDS
ATGCGCTCTTCGATATGGAG+GGG 0.676953 5.4:-71352358 MS.gene46317:CDS
GTTATACATACCCTAGCCAA+GGG 0.684397 5.4:-71351386 MS.gene46317:CDS
AGATAACTTATTCTTTGCAG+GGG 0.691736 5.4:-71350381 MS.gene46317:CDS
CCATAAGACCATGACCACCA+GGG 0.693042 5.4:+71351426 None:intergenic
CCGCCTATGACAATAACAGA+CGG 0.695318 5.4:+71353925 None:intergenic
TTGTTTACATGCCTGCTGGG+CGG 0.710778 5.4:-71350934 MS.gene46317:CDS
AACCTCTCATACAGACCATG+CGG 0.717356 5.4:+71350416 None:intergenic
GCGTGTCCTAGAAAGATACG+GGG 0.777230 5.4:-71350279 MS.gene46317:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGAAATTTAATCAATT+AGG + chr5.4:71350453-71350472 None:intergenic 10.0%
!! ATATTATAATATTACATGTA+AGG - chr5.4:71353118-71353137 MS.gene46317:intron 10.0%
!! CAAAATAAAAAATAAAAAGA+GGG + chr5.4:71350270-71350289 None:intergenic 10.0%
!! TATTATAATATTACATGTAA+GGG - chr5.4:71353119-71353138 MS.gene46317:intron 10.0%
!!! TTTTATATATTGGTAAAAAA+CGG - chr5.4:71350490-71350509 MS.gene46317:CDS 10.0%
!! AAAAAAAGTGAAAAATCATT+TGG - chr5.4:71350536-71350555 MS.gene46317:intron 15.0%
!! AAAAAAGTGAAAAATCATTT+GGG - chr5.4:71350537-71350556 MS.gene46317:intron 15.0%
!! AATGGTATATTATTTGATAT+GGG - chr5.4:71352295-71352314 MS.gene46317:CDS 15.0%
!! AGATCTAAAGATTAATAAAT+TGG - chr5.4:71351048-71351067 MS.gene46317:CDS 15.0%
!! AGGAAAAACAAAATAATTAA+AGG + chr5.4:71351769-71351788 None:intergenic 15.0%
!! CCAAAATAAAAAATAAAAAG+AGG + chr5.4:71350271-71350290 None:intergenic 15.0%
!! TTTATATATTGGTAAAAAAC+GGG - chr5.4:71350491-71350510 MS.gene46317:CDS 15.0%
!!! AATTTCTAATTTTTATGATC+AGG - chr5.4:71350462-71350481 MS.gene46317:CDS 15.0%
!!! ATGCATTTTTTGTTATTATT+TGG - chr5.4:71352190-71352209 MS.gene46317:intron 15.0%
!!! ATTTCTAATTTTTATGATCA+GGG - chr5.4:71350463-71350482 MS.gene46317:CDS 15.0%
!!! CCTCTTTTTATTTTTTATTT+TGG - chr5.4:71350268-71350287 MS.gene46317:CDS 15.0%
!!! TAAATGTTTATGCTTTTTTT+TGG - chr5.4:71350295-71350314 MS.gene46317:CDS 15.0%
!!! TTACATAAATATTTTTTTCG+CGG - chr5.4:71352916-71352935 MS.gene46317:intron 15.0%
!!! TTTAAAACTATTATAGTTAC+CGG + chr5.4:71353893-71353912 None:intergenic 15.0%
!! AACAAAATAATTAAAGGAGA+TGG + chr5.4:71351763-71351782 None:intergenic 20.0%
!! AATAATTCAAAGAGTTGTAT+TGG - chr5.4:71350591-71350610 MS.gene46317:intron 20.0%
!! AATATCCTGATCATAAAAAT+TGG + chr5.4:71350419-71350438 None:intergenic 20.0%
!! AATTGGAAATTTGATCAATT+AGG + chr5.4:71350402-71350421 None:intergenic 20.0%
!! ATTTGATTAGATTATAGATC+TGG - chr5.4:71350339-71350358 MS.gene46317:CDS 20.0%
!! GAATGGTATATTATTTGATA+TGG - chr5.4:71352294-71352313 MS.gene46317:intron 20.0%
!! TCTAATAAAAAAGATCAACA+AGG + chr5.4:71352986-71353005 None:intergenic 20.0%
!! TTATTCCATTGTAAAAAACA+AGG + chr5.4:71353925-71353944 None:intergenic 20.0%
!! TTTATTAGACACATTATTGA+AGG - chr5.4:71352997-71353016 MS.gene46317:intron 20.0%
!!! AATTTCCAATTTTTATGATC+AGG - chr5.4:71350411-71350430 MS.gene46317:CDS 20.0%
!!! ATTTGTTTGAAGTTTTGTTT+TGG - chr5.4:71353378-71353397 MS.gene46317:intron 20.0%
!!! CTTTAAAATTGAATCCATTT+AGG - chr5.4:71354133-71354152 MS.gene46317:intron 20.0%
!!! TCAGGGTATTTTTTATATAT+TGG - chr5.4:71350480-71350499 MS.gene46317:CDS 20.0%
!!! TTGAGTTTTGATAAAATGAA+TGG + chr5.4:71352690-71352709 None:intergenic 20.0%
!!! TTTAACCTTGTTTTTTACAA+TGG - chr5.4:71353917-71353936 MS.gene46317:CDS 20.0%
!!! TTTTATTTTAGCATTGAAAG+TGG - chr5.4:71352034-71352053 MS.gene46317:intron 20.0%
! AATGTTTAAATGAGAAGAAG+AGG + chr5.4:71351789-71351808 None:intergenic 25.0%
! ACAACTCTCAATACAAATAA+AGG + chr5.4:71351834-71351853 None:intergenic 25.0%
! AGTTCTTATTCATACACTAT+TGG - chr5.4:71353039-71353058 MS.gene46317:intron 25.0%
! ATAATATCCTCAATAAAAGC+CGG + chr5.4:71353105-71353124 None:intergenic 25.0%
! ATTCTATATCACTGAAATGT+TGG - chr5.4:71352798-71352817 MS.gene46317:CDS 25.0%
! CTAATTGCAATCTATTTCAT+TGG - chr5.4:71351405-71351424 MS.gene46317:CDS 25.0%
! TAAACTTAAGTTACATGTAC+AGG + chr5.4:71351382-71351401 None:intergenic 25.0%
! TACAATGGAATAAAAGTAAG+AGG - chr5.4:71353932-71353951 MS.gene46317:CDS 25.0%
! TAGATAACTTATTCTTTGCA+GGG - chr5.4:71354329-71354348 MS.gene46317:intron 25.0%
! TATCTTGCAATCTATTTCAT+TGG - chr5.4:71351481-71351500 MS.gene46317:intron 25.0%
! TTCTATATCACTGAAATGTT+GGG - chr5.4:71352799-71352818 MS.gene46317:CDS 25.0%
! TTGGATCGAAATATAGTTTA+TGG - chr5.4:71351067-71351086 MS.gene46317:CDS 25.0%
!! AAAACCATTTTATGCTATCT+TGG - chr5.4:71351583-71351602 MS.gene46317:intron 25.0%
!! AAACCATTTTATGCTATCTT+GGG - chr5.4:71351584-71351603 MS.gene46317:intron 25.0%
!! AGTTTAAAATTGGATTTGAC+TGG - chr5.4:71351637-71351656 MS.gene46317:intron 25.0%
!! GCTTTGTTAGAGTTTAAAAT+TGG - chr5.4:71351627-71351646 MS.gene46317:intron 25.0%
!! TGATTGTGATTGTTGTATTT+TGG - chr5.4:71351524-71351543 MS.gene46317:intron 25.0%
!!! AATTCACTACTTTTTTGTTC+AGG - chr5.4:71351859-71351878 MS.gene46317:intron 25.0%
!!! AGTTTTGATAAAATGAATGG+TGG + chr5.4:71352687-71352706 None:intergenic 25.0%
!!! ATTTGAAATGATTTTGCAAG+AGG - chr5.4:71352417-71352436 MS.gene46317:intron 25.0%
!!! CTTGTTGTTGAAACTATTTA+AGG - chr5.4:71351146-71351165 MS.gene46317:CDS 25.0%
!!! TAGATTATAGATCTGGTTTT+AGG - chr5.4:71350346-71350365 MS.gene46317:CDS 25.0%
!!! TGTGTTTTTTTGACATGTTT+TGG - chr5.4:71350657-71350676 MS.gene46317:intron 25.0%
!!! TTGTTGTATTTTGGTTCAAT+AGG - chr5.4:71351457-71351476 MS.gene46317:intron 25.0%
!!! TTTGATGATACCTATTTTCA+GGG - chr5.4:71353442-71353461 MS.gene46317:intron 25.0%
AAGACCTAGATAAACTATGA+GGG - chr5.4:71351012-71351031 MS.gene46317:CDS 30.0%
AAGATAGTTAGGGGATATAA+TGG - chr5.4:71353470-71353489 MS.gene46317:intron 30.0%
AGATAACTTATTCTTTGCAG+GGG - chr5.4:71354330-71354349 MS.gene46317:intron 30.0%
ATTCTCTGATGATAGCTATA+TGG - chr5.4:71354169-71354188 MS.gene46317:intron 30.0%
ATTGGTAAAAAACGGGAATA+GGG - chr5.4:71350498-71350517 MS.gene46317:intron 30.0%
CTTTCTTAATCTTCACAAAG+CGG - chr5.4:71353739-71353758 MS.gene46317:intron 30.0%
GCAAAGAATAAGTTATCTAC+AGG + chr5.4:71354328-71354347 None:intergenic 30.0%
GGTACAGATATTAATTCACT+AGG - chr5.4:71354244-71354263 MS.gene46317:intron 30.0%
GTAACCAGATATATAGAGAA+GGG + chr5.4:71353252-71353271 None:intergenic 30.0%
GTAGATAACTTATTCTTTGC+AGG - chr5.4:71354328-71354347 MS.gene46317:intron 30.0%
TAACCCAAGATAGCATAAAA+TGG + chr5.4:71351590-71351609 None:intergenic 30.0%
TACTCTCCTCAAATTATTAC+CGG + chr5.4:71350954-71350973 None:intergenic 30.0%
TATTGGTAAAAAACGGGAAT+AGG - chr5.4:71350497-71350516 MS.gene46317:intron 30.0%
TGAAGGACACAATTATTAAG+TGG - chr5.4:71353014-71353033 MS.gene46317:intron 30.0%
TGTAACCAGATATATAGAGA+AGG + chr5.4:71353253-71353272 None:intergenic 30.0%
TGTGAGTATATGAAACCATA+CGG + chr5.4:71353172-71353191 None:intergenic 30.0%
TTCTCTATATATCTGGTTAC+AGG - chr5.4:71353252-71353271 MS.gene46317:intron 30.0%
TTTCCAAATCATGATCGTAT+AGG + chr5.4:71352165-71352184 None:intergenic 30.0%
! AAATGAACCTTTTCGTGAAT+TGG + chr5.4:71350239-71350258 None:intergenic 30.0%
! AATGAACCTTTTCGTGAATT+GGG + chr5.4:71350238-71350257 None:intergenic 30.0%
! AGACATTTTCTCAATGTCTT+TGG + chr5.4:71353807-71353826 None:intergenic 30.0%
! ATTCACACTGATTACTCATT+TGG - chr5.4:71351920-71351939 MS.gene46317:CDS 30.0%
! TAATGATATGCCATTTGTAC+CGG - chr5.4:71353083-71353102 MS.gene46317:intron 30.0%
! TACACTTCAACAACGTATTT+TGG - chr5.4:71353663-71353682 MS.gene46317:intron 30.0%
! TATACGATCATGATTTGGAA+AGG - chr5.4:71352164-71352183 MS.gene46317:intron 30.0%
! TGATTGCGATTGTTGTATTT+TGG - chr5.4:71351448-71351467 MS.gene46317:intron 30.0%
!! CTTTGATGATACCTATTTTC+AGG - chr5.4:71353441-71353460 MS.gene46317:intron 30.0%
!! GCATTTTAGAAGATAAGTGT+GGG - chr5.4:71354000-71354019 MS.gene46317:intron 30.0%
!! TGCATTTTAGAAGATAAGTG+TGG - chr5.4:71353999-71354018 MS.gene46317:intron 30.0%
!!! CATAAATATTTTTTTCGCGG+TGG - chr5.4:71352919-71352938 MS.gene46317:intron 30.0%
!!! CTTTTTTTTGGTTCTGAATG+TGG - chr5.4:71350307-71350326 MS.gene46317:CDS 30.0%
AAACCGTGTTCAAGATGTTT+GGG - chr5.4:71352838-71352857 MS.gene46317:intron 35.0%
AAACTCAAATTCGTTGATGC+AGG - chr5.4:71352702-71352721 MS.gene46317:intron 35.0%
AAAGTGGCTGATTATGATTC+AGG - chr5.4:71352050-71352069 MS.gene46317:intron 35.0%
ACAAGGACAAAGAACTGAAA+TGG + chr5.4:71352969-71352988 None:intergenic 35.0%
ACTAATCCCAATTCACGAAA+AGG - chr5.4:71350229-71350248 MS.gene46317:CDS 35.0%
ACTTCATGATGCTTCATTTC+AGG - chr5.4:71350839-71350858 MS.gene46317:intron 35.0%
ATATGTCACCATGTGGAAAT+GGG + chr5.4:71351706-71351725 None:intergenic 35.0%
ATCATCAAAGCCAGTTAGTT+TGG + chr5.4:71353431-71353450 None:intergenic 35.0%
ATTCTGTAGCCTACAAAACA+TGG + chr5.4:71354113-71354132 None:intergenic 35.0%
CAAATACGAGATATCAGAAG+TGG + chr5.4:71354502-71354521 None:intergenic 35.0%
CAACGAGTGTATTACATACA+GGG - chr5.4:71354356-71354375 MS.gene46317:intron 35.0%
GAAGACCTAGATAAACTATG+AGG - chr5.4:71351011-71351030 MS.gene46317:CDS 35.0%
GATAATAATGACCTCAGTTC+TGG + chr5.4:71352644-71352663 None:intergenic 35.0%
GATTAATAAGTGACTCCGTA+TGG - chr5.4:71353154-71353173 MS.gene46317:intron 35.0%
GTATCATTGCATGTAACTCT+TGG + chr5.4:71350918-71350937 None:intergenic 35.0%
GTTTCCCTCATAGTTTATCT+AGG + chr5.4:71351019-71351038 None:intergenic 35.0%
GTTTGGTAAACCAACAAAAC+AGG + chr5.4:71353414-71353433 None:intergenic 35.0%
TAAAAGTAAGAGGTTCAGAG+TGG - chr5.4:71353942-71353961 MS.gene46317:CDS 35.0%
TCAATAAAAGCCGGTACAAA+TGG + chr5.4:71353096-71353115 None:intergenic 35.0%
TCAGTGGTATTTATGCAGAA+TGG - chr5.4:71352751-71352770 MS.gene46317:intron 35.0%
TCTATGCACAGAAACCTAAA+TGG + chr5.4:71354150-71354169 None:intergenic 35.0%
TGAAGGTGACTACTGAAAAT+GGG - chr5.4:71353495-71353514 MS.gene46317:intron 35.0%
TGGTATTTATGCAGAATGGA+GGG - chr5.4:71352755-71352774 MS.gene46317:intron 35.0%
TGTCCTATACGATCATGATT+TGG - chr5.4:71352159-71352178 MS.gene46317:intron 35.0%
TGTTGTTGTACTGTCTATGT+AGG - chr5.4:71350723-71350742 MS.gene46317:intron 35.0%
TTGGGTTATACAACTTCACT+TGG - chr5.4:71351602-71351621 MS.gene46317:intron 35.0%
! AAGTCTTTGTCCTGTTTTGT+TGG - chr5.4:71353401-71353420 MS.gene46317:intron 35.0%
! AATTGAAAGTGCACGAAGAA+TGG + chr5.4:71352606-71352625 None:intergenic 35.0%
! ACACTATTGGTGTGAGTTTT+AGG - chr5.4:71353052-71353071 MS.gene46317:intron 35.0%
! ATGTGTACTGTCTAGTTTAG+AGG - chr5.4:71354071-71354090 MS.gene46317:intron 35.0%
! TCTCTTGAACCATGTTTTGT+AGG - chr5.4:71354101-71354120 MS.gene46317:intron 35.0%
!! TCTGAAGTGTCAGTGTTTTA+TGG - chr5.4:71351207-71351226 MS.gene46317:CDS 35.0%
!! TGATTATGATTCAGGTTGCA+TGG - chr5.4:71352058-71352077 MS.gene46317:intron 35.0%
!! TGTTGGTTTACCAAACTAAC+TGG - chr5.4:71353418-71353437 MS.gene46317:intron 35.0%
!! TTGGTTCCTCTAAAGTGATA+GGG - chr5.4:71353967-71353986 MS.gene46317:CDS 35.0%
!! TTTGGTTCCTCTAAAGTGAT+AGG - chr5.4:71353966-71353985 MS.gene46317:CDS 35.0%
!!! ATTTGTACCGGCTTTTATTG+AGG - chr5.4:71353095-71353114 MS.gene46317:intron 35.0%
AAATGTTGGGACCAGGTAAT+TGG - chr5.4:71352812-71352831 MS.gene46317:CDS 40.0%
AACCCCAAACATCTTGAACA+CGG + chr5.4:71352844-71352863 None:intergenic 40.0%
AACCGTGTTCAAGATGTTTG+GGG - chr5.4:71352839-71352858 MS.gene46317:intron 40.0%
ACACTGACACTTCAGATTGA+AGG + chr5.4:71351203-71351222 None:intergenic 40.0%
ACTTCTGTAACCAACTCTTG+TGG + chr5.4:71352388-71352407 None:intergenic 40.0%
AGATATATTCCAGCCAGAGT+TGG - chr5.4:71354459-71354478 MS.gene46317:intron 40.0%
AGATTCAGTATCTCGTGTCT+CGG - chr5.4:71354218-71354237 MS.gene46317:intron 40.0%
AGTTTGCAATGAGAATCCTC+TGG - chr5.4:71352081-71352100 MS.gene46317:intron 40.0%
ATACCATTCAAGATGACCAG+AGG + chr5.4:71352283-71352302 None:intergenic 40.0%
ATCTTTACCATGATGCACCT+AGG + chr5.4:71351958-71351977 None:intergenic 40.0%
ATCTTTGTCGCCCTGAAAAT+AGG + chr5.4:71353455-71353474 None:intergenic 40.0%
ATGCGTGTCCTAGAAAGATA+CGG - chr5.4:71354430-71354449 MS.gene46317:intron 40.0%
ATGGATAGTCGTATCACTAG+AGG - chr5.4:71350983-71351002 MS.gene46317:CDS 40.0%
CAGAGTTATCCTCACAAGTA+CGG + chr5.4:71352141-71352160 None:intergenic 40.0%
CATATGTCACCATGTGGAAA+TGG + chr5.4:71351707-71351726 None:intergenic 40.0%
CCTATAGTTATGACGCAGTT+GGG - chr5.4:71354269-71354288 MS.gene46317:intron 40.0%
CTAAAGTGATAGGGTCTGAA+GGG - chr5.4:71353976-71353995 MS.gene46317:intron 40.0%
CTATCATTGCTGTACCTCTT+GGG - chr5.4:71353540-71353559 MS.gene46317:intron 40.0%
CTCACCCTTCTCTATATATC+TGG - chr5.4:71353245-71353264 MS.gene46317:intron 40.0%
CTTCAGATTGAAGGTTTGTC+TGG + chr5.4:71351194-71351213 None:intergenic 40.0%
GAAACCGTGTTCAAGATGTT+TGG - chr5.4:71352837-71352856 MS.gene46317:intron 40.0%
GAAATGGGAATTTGTCCCAA+AGG + chr5.4:71351691-71351710 None:intergenic 40.0%
GAATCAAGTTCCACAAGAGT+TGG - chr5.4:71352375-71352394 MS.gene46317:intron 40.0%
GAATGCTTCAATCTTTCCTC+TGG - chr5.4:71352264-71352283 MS.gene46317:intron 40.0%
GACAAATTCCCATTTCCACA+TGG - chr5.4:71351695-71351714 MS.gene46317:intron 40.0%
GAGGAGAGTAGATAAGATGA+TGG - chr5.4:71350964-71350983 MS.gene46317:CDS 40.0%
GCAACGAGTGTATTACATAC+AGG - chr5.4:71354355-71354374 MS.gene46317:intron 40.0%
GTAGTTGCTGAGACATCTTA+TGG - chr5.4:71353707-71353726 MS.gene46317:intron 40.0%
GTGAAGGTGACTACTGAAAA+TGG - chr5.4:71353494-71353513 MS.gene46317:intron 40.0%
GTGGTATTTATGCAGAATGG+AGG - chr5.4:71352754-71352773 MS.gene46317:intron 40.0%
GTTATACATACCCTAGCCAA+GGG - chr5.4:71353325-71353344 MS.gene46317:intron 40.0%
TATCATTGCTGTACCTCTTG+GGG - chr5.4:71353541-71353560 MS.gene46317:intron 40.0%
TCAAACCAAACCACACCTTT+GGG - chr5.4:71351673-71351692 MS.gene46317:intron 40.0%
TCAAATTCGTTGATGCAGGT+TGG - chr5.4:71352706-71352725 MS.gene46317:intron 40.0%
TCACCGTCTGTTATTGTCAT+AGG - chr5.4:71350783-71350802 MS.gene46317:intron 40.0%
TCCTATAGTTATGACGCAGT+TGG - chr5.4:71354268-71354287 MS.gene46317:intron 40.0%
TCGACACCGGTAATAATTTG+AGG - chr5.4:71350945-71350964 MS.gene46317:CDS 40.0%
TCTTTCCAATCTGGAAGCTT+TGG + chr5.4:71353596-71353615 None:intergenic 40.0%
TGCATACTCTACTGGAACAA+TGG - chr5.4:71354390-71354409 MS.gene46317:intron 40.0%
TGTGTTCATATGTCACCATG+TGG + chr5.4:71351713-71351732 None:intergenic 40.0%
TGTTATACATACCCTAGCCA+AGG - chr5.4:71353324-71353343 MS.gene46317:intron 40.0%
TTACATACAGGGTCTGTTCA+TGG - chr5.4:71354367-71354386 MS.gene46317:intron 40.0%
TTCAGACCCTATCACTTTAG+AGG + chr5.4:71353976-71353995 None:intergenic 40.0%
TTGAAAGAAAGCCAGAACTG+AGG - chr5.4:71352630-71352649 MS.gene46317:CDS 40.0%
TTGGCTAGGGTATGTATAAC+AGG + chr5.4:71353325-71353344 None:intergenic 40.0%
TTTCCTCTGGTCATCTTGAA+TGG - chr5.4:71352277-71352296 MS.gene46317:intron 40.0%
! ATGAAGCATCATGAAGTGCA+CGG + chr5.4:71350836-71350855 None:intergenic 40.0%
! CAAGAGTTGGTTACAGAAGT+TGG - chr5.4:71352388-71352407 MS.gene46317:intron 40.0%
! TAAGAGGTTCAGAGTGGATT+TGG - chr5.4:71353948-71353967 MS.gene46317:CDS 40.0%
! TAGGGGATATAATGGAGTGA+AGG - chr5.4:71353478-71353497 MS.gene46317:intron 40.0%
! TCTAAAGTGATAGGGTCTGA+AGG - chr5.4:71353975-71353994 MS.gene46317:intron 40.0%
! TGTGTGTCTGTTATTTGCTG+TGG - chr5.4:71351303-71351322 MS.gene46317:intron 40.0%
! TTCTTGTTTACATGCCTGCT+GGG - chr5.4:71353774-71353793 MS.gene46317:intron 40.0%
!! GTGTGTCTGTTATTTGCTGT+GGG - chr5.4:71351304-71351323 MS.gene46317:intron 40.0%
!!! AGATCTGGTTTTAGGATCGT+GGG - chr5.4:71350354-71350373 MS.gene46317:CDS 40.0%
!!! AGGTCGTTCTTTTAGAATCC+CGG - chr5.4:71351879-71351898 MS.gene46317:intron 40.0%
!!! TAGATCTGGTTTTAGGATCG+TGG - chr5.4:71350353-71350372 MS.gene46317:CDS 40.0%
!!! TTTGGTTTTCCTGTTGACCT+AGG - chr5.4:71351938-71351957 MS.gene46317:CDS 40.0%
AACCTCTCATACAGACCATG+CGG + chr5.4:71354298-71354317 None:intergenic 45.0%
AAGCTGCCATTGCTGATATC+GGG - chr5.4:71353615-71353634 MS.gene46317:intron 45.0%
AAGGTTTGTCTGGCATACGA+GGG + chr5.4:71351184-71351203 None:intergenic 45.0%
AATGTCAAGACCCTTGGCTA+GGG + chr5.4:71353338-71353357 None:intergenic 45.0%
ACCTCTTTACCGTACTTGTG+AGG - chr5.4:71352129-71352148 MS.gene46317:CDS 45.0%
AGGGCGACAAAGATAGTTAG+GGG - chr5.4:71353461-71353480 MS.gene46317:intron 45.0%
AGTCGTATCACTAGAGGTAG+AGG - chr5.4:71350989-71351008 MS.gene46317:CDS 45.0%
ATCACTGAAATGTTGGGACC+AGG - chr5.4:71352805-71352824 MS.gene46317:CDS 45.0%
ATGGCAGCTTCTTTCCAATC+TGG + chr5.4:71353605-71353624 None:intergenic 45.0%
ATGGTCTGTATGAGAGGTTG+CGG - chr5.4:71354299-71354318 MS.gene46317:intron 45.0%
ATTTATGCAGAATGGAGGGC+TGG - chr5.4:71352759-71352778 MS.gene46317:intron 45.0%
CACGGTTTCTTCCAATTACC+TGG + chr5.4:71352826-71352845 None:intergenic 45.0%
CAGGGCGACAAAGATAGTTA+GGG - chr5.4:71353460-71353479 MS.gene46317:intron 45.0%
CCACTTAGTGGGATAAGACT+GGG - chr5.4:71351114-71351133 MS.gene46317:CDS 45.0%
CCCAACTGCGTCATAACTAT+AGG + chr5.4:71354272-71354291 None:intergenic 45.0%
CCGCCTATGACAATAACAGA+CGG + chr5.4:71350789-71350808 None:intergenic 45.0%
CCGTCTGTTATTGTCATAGG+CGG - chr5.4:71350786-71350805 MS.gene46317:intron 45.0%
CGGGAATAGGGTTTGAAAAG+TGG - chr5.4:71350510-71350529 MS.gene46317:intron 45.0%
CTAGGGTATGTATAACAGGC+AGG + chr5.4:71353321-71353340 None:intergenic 45.0%
CTAGTTCCCCGTATCTTTCT+AGG + chr5.4:71354441-71354460 None:intergenic 45.0%
CTTAATCTTCACAAAGCGGC+AGG - chr5.4:71353743-71353762 MS.gene46317:intron 45.0%
CTTATCCCACTAAGTGGGAT+CGG + chr5.4:71351111-71351130 None:intergenic 45.0%
GAAGCTGCCATTGCTGATAT+CGG - chr5.4:71353614-71353633 MS.gene46317:intron 45.0%
GCAGACAGATAATGTACGAC+AGG - chr5.4:71352562-71352581 MS.gene46317:CDS 45.0%
GCAGGCATGTAAACAAGAAC+AGG + chr5.4:71353773-71353792 None:intergenic 45.0%
GCTATCATTGCTGTACCTCT+TGG - chr5.4:71353539-71353558 MS.gene46317:intron 45.0%
GTCAAACCAAACCACACCTT+TGG - chr5.4:71351672-71351691 MS.gene46317:intron 45.0%
GTTCATGGTGCATACTCTAC+TGG - chr5.4:71354382-71354401 MS.gene46317:intron 45.0%
TAGCCAAGGGTCTTGACATT+CGG - chr5.4:71353338-71353357 MS.gene46317:intron 45.0%
TATGCGCTCTTCGATATGGA+GGG - chr5.4:71352352-71352371 MS.gene46317:CDS 45.0%
TCAGGGCGACAAAGATAGTT+AGG - chr5.4:71353459-71353478 MS.gene46317:intron 45.0%
TCCTCACAAGTACGGTAAAG+AGG + chr5.4:71352133-71352152 None:intergenic 45.0%
TCTGTTATTGTCATAGGCGG+TGG - chr5.4:71350789-71350808 MS.gene46317:intron 45.0%
TGCGTGTCCTAGAAAGATAC+GGG - chr5.4:71354431-71354450 MS.gene46317:intron 45.0%
TTACAGGAAGAATTGCTCCC+TGG - chr5.4:71353268-71353287 MS.gene46317:intron 45.0%
TTAGAATCCCGGGATAGACT+TGG - chr5.4:71351890-71351909 MS.gene46317:intron 45.0%
TTGAGCCAAAGCTTCCAGAT+TGG - chr5.4:71353588-71353607 MS.gene46317:intron 45.0%
TTTGCTTTCAGTACCCCAAG+AGG + chr5.4:71353557-71353576 None:intergenic 45.0%
! AATCCTCTGGCTCCATTGAT+TGG - chr5.4:71352094-71352113 MS.gene46317:CDS 45.0%
! AATTCGTTGATGCAGGTTGG+AGG - chr5.4:71352709-71352728 MS.gene46317:intron 45.0%
! ACAATGCGTGTCTTCGAGTT+TGG - chr5.4:71351250-71351269 MS.gene46317:CDS 45.0%
! ACACGCATTGTGTATTGACG+TGG + chr5.4:71351241-71351260 None:intergenic 45.0%
! AGTTACCGGTGAAGAAGCAT+CGG + chr5.4:71353879-71353898 None:intergenic 45.0%
! ATCCTCTGGCTCCATTGATT+GGG - chr5.4:71352095-71352114 MS.gene46317:CDS 45.0%
! ATTCGTTGATGCAGGTTGGA+GGG - chr5.4:71352710-71352729 MS.gene46317:intron 45.0%
! CCAGTCTTATCCCACTAAGT+GGG + chr5.4:71351116-71351135 None:intergenic 45.0%
! GTGGACTGAGGATTCATGTA+TGG - chr5.4:71352938-71352957 MS.gene46317:intron 45.0%
! GTTCTTGTTTACATGCCTGC+TGG - chr5.4:71353773-71353792 MS.gene46317:intron 45.0%
! TGAAGCATCATGAAGTGCAC+GGG + chr5.4:71350835-71350854 None:intergenic 45.0%
! TTTCACACAAGGTGCTTCAG+TGG - chr5.4:71352735-71352754 MS.gene46317:intron 45.0%
! TTTGTCCCAAAGGTGTGGTT+TGG + chr5.4:71351681-71351700 None:intergenic 45.0%
!! TGGTCATGGTCTTATGGTCA+GGG - chr5.4:71353291-71353310 MS.gene46317:intron 45.0%
!!! ATTTTTTTCGCGGTGGACTG+AGG - chr5.4:71352926-71352945 MS.gene46317:intron 45.0%
!!! CAACGTATTTTGGCCCAATG+TGG - chr5.4:71353673-71353692 MS.gene46317:intron 45.0%
!!! GGTCGTTCTTTTAGAATCCC+GGG - chr5.4:71351880-71351899 MS.gene46317:intron 45.0%
AACCGCATGGTCTGTATGAG+AGG - chr5.4:71354293-71354312 MS.gene46317:intron 50.0%
AAGGGTCTTGACATTCGGCT+GGG - chr5.4:71353343-71353362 MS.gene46317:intron 50.0%
ACCATAAGACCATGACCACC+AGG + chr5.4:71353289-71353308 None:intergenic 50.0%
ACTAAGTGGGATCGGCTACA+TGG + chr5.4:71351103-71351122 None:intergenic 50.0%
ACTCCCAGGAACTCCACATT+GGG + chr5.4:71353689-71353708 None:intergenic 50.0%
ACTGAACCCTCTTCCAACTC+TGG + chr5.4:71354475-71354494 None:intergenic 50.0%
AGCTGCCATTGCTGATATCG+GGG - chr5.4:71353616-71353635 MS.gene46317:intron 50.0%
ATAACAGACGGTGACCTTCG+AGG + chr5.4:71350777-71350796 None:intergenic 50.0%
ATGCGCTCTTCGATATGGAG+GGG - chr5.4:71352353-71352372 MS.gene46317:CDS 50.0%
ATGTAGCCGATCCCACTTAG+TGG - chr5.4:71351102-71351121 MS.gene46317:CDS 50.0%
ATGTCTCAGCAACTACTCCC+AGG + chr5.4:71353703-71353722 None:intergenic 50.0%
ATGTTGATCAGCAGCCTCGA+AGG - chr5.4:71350760-71350779 MS.gene46317:intron 50.0%
ATTCCAGCCAGAGTTGGAAG+AGG - chr5.4:71354465-71354484 MS.gene46317:intron 50.0%
CAGCTATGCGCTCTTCGATA+TGG - chr5.4:71352348-71352367 MS.gene46317:CDS 50.0%
CATGATGCACCTAGGTCAAC+AGG + chr5.4:71351950-71351969 None:intergenic 50.0%
CCATAAGACCATGACCACCA+GGG + chr5.4:71353288-71353307 None:intergenic 50.0%
CCCACTTAGTGGGATAAGAC+TGG - chr5.4:71351113-71351132 MS.gene46317:CDS 50.0%
CTATGCGCTCTTCGATATGG+AGG - chr5.4:71352351-71352370 MS.gene46317:CDS 50.0%
CTGTTGACCTAGGTGCATCA+TGG - chr5.4:71351948-71351967 MS.gene46317:CDS 50.0%
GAAGGTTTGTCTGGCATACG+AGG + chr5.4:71351185-71351204 None:intergenic 50.0%
GAATGTCAAGACCCTTGGCT+AGG + chr5.4:71353339-71353358 None:intergenic 50.0%
GCGTGTCCTAGAAAGATACG+GGG - chr5.4:71354432-71354451 MS.gene46317:intron 50.0%
GGGAATTTGTCCCAAAGGTG+TGG + chr5.4:71351686-71351705 None:intergenic 50.0%
TACTCCCAGGAACTCCACAT+TGG + chr5.4:71353690-71353709 None:intergenic 50.0%
TACTGGAACAATGGCTGCTG+AGG - chr5.4:71354399-71354418 MS.gene46317:intron 50.0%
TATTGTCATAGGCGGTGGCA+TGG - chr5.4:71350794-71350813 MS.gene46317:intron 50.0%
TCAGTATCTCGTGTCTCGGT+GGG - chr5.4:71354222-71354241 MS.gene46317:intron 50.0%
TCCAACCCCGATATCAGCAA+TGG + chr5.4:71353624-71353643 None:intergenic 50.0%
TGATACTCACTCGTCGACAC+CGG - chr5.4:71350932-71350951 MS.gene46317:CDS 50.0%
TGGTCTGTATGAGAGGTTGC+GGG - chr5.4:71354300-71354319 MS.gene46317:intron 50.0%
TGTAGCCGATCCCACTTAGT+GGG - chr5.4:71351103-71351122 MS.gene46317:CDS 50.0%
TTCAGTATCTCGTGTCTCGG+TGG - chr5.4:71354221-71354240 MS.gene46317:intron 50.0%
TTCCAGCCAGAGTTGGAAGA+GGG - chr5.4:71354466-71354485 MS.gene46317:intron 50.0%
TTCTGCCACCAAGTCTATCC+CGG + chr5.4:71351901-71351920 None:intergenic 50.0%
TTGTTTACATGCCTGCTGGG+CGG - chr5.4:71353777-71353796 MS.gene46317:intron 50.0%
! CCCAGTCTTATCCCACTAAG+TGG + chr5.4:71351117-71351136 None:intergenic 50.0%
! TTCGTTGATGCAGGTTGGAG+GGG - chr5.4:71352711-71352730 MS.gene46317:intron 50.0%
!! GGTCATGGTCTTATGGTCAG+GGG - chr5.4:71353292-71353311 MS.gene46317:intron 50.0%
!! GTGGTCATGGTCTTATGGTC+AGG - chr5.4:71353290-71353309 MS.gene46317:intron 50.0%
!! GTTACCGGTGAAGAAGCATC+GGG + chr5.4:71353878-71353897 None:intergenic 50.0%
AACCCTCTTCCAACTCTGGC+TGG + chr5.4:71354471-71354490 None:intergenic 55.0%
AGGGTCTTGACATTCGGCTG+GGG - chr5.4:71353344-71353363 MS.gene46317:intron 55.0%
AGTCCCAGCCTCCCAATCAA+TGG + chr5.4:71352109-71352128 None:intergenic 55.0%
CAAGGGTCTTGACATTCGGC+TGG - chr5.4:71353342-71353361 MS.gene46317:intron 55.0%
CAGCCGAATGTCAAGACCCT+TGG + chr5.4:71353344-71353363 None:intergenic 55.0%
CAGGAAGAATTGCTCCCTGG+TGG - chr5.4:71353271-71353290 MS.gene46317:intron 55.0%
CAGTATCTCGTGTCTCGGTG+GGG - chr5.4:71354223-71354242 MS.gene46317:intron 55.0%
CCTTCCCGATGCTTCTTCAC+CGG - chr5.4:71353871-71353890 MS.gene46317:intron 55.0%
CTCCCAATCAATGGAGCCAG+AGG + chr5.4:71352100-71352119 None:intergenic 55.0%
GAATCCCGGGATAGACTTGG+TGG - chr5.4:71351893-71351912 MS.gene46317:intron 55.0%
GAATTGCTCCCTGGTGGTCA+TGG - chr5.4:71353277-71353296 MS.gene46317:intron 55.0%
GCCATTGCTGATATCGGGGT+TGG - chr5.4:71353620-71353639 MS.gene46317:intron 55.0%
GTTGGAGGGGCTTTCACACA+AGG - chr5.4:71352724-71352743 MS.gene46317:intron 55.0%
TCTGCCACCAAGTCTATCCC+GGG + chr5.4:71351900-71351919 None:intergenic 55.0%
TGGCCCAATGTGGAGTTCCT+GGG - chr5.4:71353683-71353702 MS.gene46317:intron 55.0%
TTGGCCCAATGTGGAGTTCC+TGG - chr5.4:71353682-71353701 MS.gene46317:intron 55.0%
! CCCTGGTGGTCATGGTCTTA+TGG - chr5.4:71353285-71353304 MS.gene46317:intron 55.0%
! CTCTGGCTCCATTGATTGGG+AGG - chr5.4:71352098-71352117 MS.gene46317:CDS 55.0%
! GCTCCATTGATTGGGAGGCT+GGG - chr5.4:71352103-71352122 MS.gene46317:CDS 55.0%
! GTGTCTTCGAGTTTGGCTCG+TGG - chr5.4:71351257-71351276 MS.gene46317:intron 55.0%
CAATGGCTGCTGAGGACTGC+AGG - chr5.4:71354407-71354426 MS.gene46317:intron 60.0%
GACGCAGTTGGGAAACCGCA+TGG - chr5.4:71354280-71354299 MS.gene46317:intron 60.0%
TCATAGGCGGTGGCATGGCT+GGG - chr5.4:71350799-71350818 MS.gene46317:intron 60.0%
TTGACATTCGGCTGGGGCAC+AGG - chr5.4:71353350-71353369 MS.gene46317:intron 60.0%
! GGCTCCATTGATTGGGAGGC+TGG - chr5.4:71352102-71352121 MS.gene46317:CDS 60.0%
!! CCGGTGAAGAAGCATCGGGA+AGG + chr5.4:71353874-71353893 None:intergenic 60.0%
GTCATAGGCGGTGGCATGGC+TGG - chr5.4:71350798-71350817 MS.gene46317:intron 65.0%
TTACATGCCTGCTGGGCGGC+TGG - chr5.4:71353781-71353800 MS.gene46317:intron 65.0%
TCTTTGGCCAGCCGCCCAGC+AGG + chr5.4:71353791-71353810 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 71350211 71354522 71350211 ID=MS.gene46317
chr5.4 mRNA 71350211 71354522 71350211 ID=MS.gene46317.t1;Parent=MS.gene46317
chr5.4 exon 71354483 71354522 71354483 ID=MS.gene46317.t1.exon1;Parent=MS.gene46317.t1
chr5.4 CDS 71354483 71354522 71354483 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71353873 71353988 71353873 ID=MS.gene46317.t1.exon2;Parent=MS.gene46317.t1
chr5.4 CDS 71353873 71353988 71353873 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71352764 71352852 71352764 ID=MS.gene46317.t1.exon3;Parent=MS.gene46317.t1
chr5.4 CDS 71352764 71352852 71352764 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71352548 71352661 71352548 ID=MS.gene46317.t1.exon4;Parent=MS.gene46317.t1
chr5.4 CDS 71352548 71352661 71352548 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71352295 71352382 71352295 ID=MS.gene46317.t1.exon5;Parent=MS.gene46317.t1
chr5.4 CDS 71352295 71352382 71352295 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71352082 71352167 71352082 ID=MS.gene46317.t1.exon6;Parent=MS.gene46317.t1
chr5.4 CDS 71352082 71352167 71352082 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71351907 71352009 71351907 ID=MS.gene46317.t1.exon7;Parent=MS.gene46317.t1
chr5.4 CDS 71351907 71352009 71351907 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71351362 71351459 71351362 ID=MS.gene46317.t1.exon8;Parent=MS.gene46317.t1
chr5.4 CDS 71351362 71351459 71351362 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71350841 71351270 71350841 ID=MS.gene46317.t1.exon9;Parent=MS.gene46317.t1
chr5.4 CDS 71350841 71351270 71350841 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
chr5.4 exon 71350211 71350513 71350211 ID=MS.gene46317.t1.exon10;Parent=MS.gene46317.t1
chr5.4 CDS 71350211 71350513 71350211 ID=cds.MS.gene46317.t1;Parent=MS.gene46317.t1
Gene Sequence

>MS.gene46317

ATGGAGTCACGAATTAAGACTAATCCCAATTCACGAAAAGGTTCATTTTTTAACTACCCTCTTTTTATTTTTTATTTTGGTTTATAAATGTTTATGCTTTTTTTTGGTTCTGAATGTGGTAATAATTTATTTGATTAGATTATAGATCTGGTTTTAGGATCGTGGGCTTTAATTTCGCTATTTTTACTCCTAATTGATCAAATTTCCAATTTTTATGATCAGGATATTTTTTATACATTCCTAATTGATTAAATTTCTAATTTTTATGATCAGGGTATTTTTTATATATTGGTAAAAAACGGGAATAGGGTTTGAAAAGTGGAAAAAAAAAAGTGAAAAATCATTTGGGTCGTTGTCATCATAGAATCTGATAAATGATGAATAATTCAAAGAGTTGTATTGGTTTGTTTCTAATAGAGATTTGATGTGTTTTTGTGTCTGATAATTGTGTTTTTTTGACATGTTTTGGTTCTATTTATGCGTTTATGTTTGTTATTGACTTTGATTTTTATTGTTGTTGTACTGTCTATGTAGGTTTGTGCTATGTCAATGTTGATCAGCAGCCTCGAAGGTCACCGTCTGTTATTGTCATAGGCGGTGGCATGGCTGGGATTGCTGCTGCCCGTGCACTTCATGATGCTTCATTTCAGGTATTCAAGCAAATGATATAGCTGATAACTTTATTTTACTTACTATTCAGTTTGCCAAGAGTTACATGCAATGATACTCACTCGTCGACACCGGTAATAATTTGAGGAGAGTAGATAAGATGATGGATAGTCGTATCACTAGAGGTAGAGGAAGACCTAGATAAACTATGAGGGAAACTATTAAGAAAGATCTAAAGATTAATAAATTGGATCGAAATATAGTTTATGGCGTAATTTATCCATGTAGCCGATCCCACTTAGTGGGATAAGACTGGGTCGTTGTTGCTTGTTGTTGAAACTATTTAAGGTTCAACATGTGTCCCTCGTATGCCAGACAAACCTTCAATCTGAAGTGTCAGTGTTTTATGGATTACATGCCACGTCAATACACAATGCGTGTCTTCGAGTTTGGCTCGTGGCTATATGAATATGACTACAATTATGTGTGTCTGTTATTTGCTGTGGGTTGTTAGTTATGTCTACTAATTGAAGATTGAAGATGATTAAGAATTAAATGTCCTGTACATGTAACTTAAGTTTAATGCTAATTGCAATCTATTTCATTGGAAATATTTGCAACTCATTTATGATTGCGATTGTTGTATTTTGGTTCAATAGGTTATCTTGCAATCTATTTCATTGGAAATATTTGCAACTCATTTATGATTGTGATTGTTGTATTTTGGTTCAATAGGTTATCTTAAAGTAAAAGTAGCTTGTTTAAAACCATTTTATGCTATCTTGGGTTATACAACTTCACTTGGTTGCTTTGTTAGAGTTTAAAATTGGATTTGACTGGTTTTGTACTTTAGTCAAACCAAACCACACCTTTGGGACAAATTCCCATTTCCACATGGTGACATATGAACACACATATATTTAGCTAATGAAGAGAGACACCATCTCCTTTAATTATTTTGTTTTTCCTCTTCTTCTCATTTAAACATTCGTACTTTTGTATCTATCAGCTCCTTTATTTGTATTGAGAGTTGTACTGAAATTCACTACTTTTTTGTTCAGGTCGTTCTTTTAGAATCCCGGGATAGACTTGGTGGCAGAATTCACACTGATTACTCATTTGGTTTTCCTGTTGACCTAGGTGCATCATGGTAAAGATTATACTCTTTTCATTCTGATTTTTTCATGTTGACAAAAACGCAAGATTTCTTTCTTTTTTATTTTAGCATTGAAAGTGGCTGATTATGATTCAGGTTGCATGGAGTTTGCAATGAGAATCCTCTGGCTCCATTGATTGGGAGGCTGGGACTACCTCTTTACCGTACTTGTGAGGATAACTCTGTCCTATACGATCATGATTTGGAAAGGTAAATGCATTTTTTGTTATTATTTGGTAGTAGTTATCGATTTCTTCTGTGCTTTTGTAAGTAATTAACGACTACATTGAATGCTTCAATCTTTCCTCTGGTCATCTTGAATGGTATATTATTTGATATGGGATTCTTTGATTCAAAGTTGTCAACTTTTTACAGCTATGCGCTCTTCGATATGGAGGGGAATCAAGTTCCACAAGAGTTGGTTACAGAAGTTGGTAAAACATTTGAAATGATTTTGCAAGAGGTATGTCATTTGTTTATTTGCAAGAGTTAATTGAAATCGCAATTTTTTTTTAATTGAAATCGCAAATGTTTGATTCAACTTGTTTACAATGAGCATCTCATCTAACAATTGACATTTATTAATGCAGACAGATAATGTACGACAGGAATTCAGCGAAGACATGTCCATTCTTCGTGCACTTTCAATTGTTTTTGAAAGAAAGCCAGAACTGAGGTCATTATTATCATAAAACTCAAATTCGTTGACCACCATTCATTTTATCAAAACTCAAATTCGTTGATGCAGGTTGGAGGGGCTTTCACACAAGGTGCTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGATTCTATATCACTGAAATGTTGGGACCAGGTAATTGGAAGAAACCGTGTTCAAGATGTTTGGGGTTCTATTATTTGTATTGTCTATTTCAAGTTTATGTCATTGAAATTTGAGTTGCATTACATAAATATTTTTTTCGCGGTGGACTGAGGATTCATGTATGGTTTTTCCATTTCAGTTCTTTGTCCTTGTTGATCTTTTTTATTAGACACATTATTGAAGGACACAATTATTAAGTGGCAAGTTCTTATTCATACACTATTGGTGTGAGTTTTAGGTTAAATGTTAATGATATGCCATTTGTACCGGCTTTTATTGAGGATATTATAATATTACATGTAAGGGATATAAAAATGAGATTAATAAGTGACTCCGTATGGTTTCATATACTCACATTATGTTGCGAGTAACTTGTAATCATTACGTGCATTAACATTTTGATGTGTAACTCACCCTTCTCTATATATCTGGTTACAGGAAGAATTGCTCCCTGGTGGTCATGGTCTTATGGTCAGGGGATACCTGCCTGTTATACATACCCTAGCCAAGGGTCTTGACATTCGGCTGGGGCACAGGTATATATTTGTTTGAAGTTTTGTTTTGGAAGTCTTTGTCCTGTTTTGTTGGTTTACCAAACTAACTGGCTTTGATGATACCTATTTTCAGGGCGACAAAGATAGTTAGGGGATATAATGGAGTGAAGGTGACTACTGAAAATGGGAAAACATTTGTTGCTGACGCTGCTATCATTGCTGTACCTCTTGGGGTACTGAAAGCAAATGTAATAAAATTTGAGCCAAAGCTTCCAGATTGGAAAGAAGCTGCCATTGCTGATATCGGGGTTGGAGTTGAGAATAAAATAATTTTACACTTCAACAACGTATTTTGGCCCAATGTGGAGTTCCTGGGAGTAGTTGCTGAGACATCTTATGGATGCAGCTACTTTCTTAATCTTCACAAAGCGGCAGGTCATCCTGTTCTTGTTTACATGCCTGCTGGGCGGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCTAACTTTGCTTTCACACAACTCAAGAAGATCCTTCCCGATGCTTCTTCACCGGTAACTATAATAGTTTTAAATATATTTAACCTTGTTTTTTACAATGGAATAAAAGTAAGAGGTTCAGAGTGGATTTGGTTCCTCTAAAGTGATAGGGTCTGAAGGGTGCATTTTAGAAGATAAGTGTGGGATTGAAACTAATTGATTAGAAAAATTATCACTTGCATTTTACTTTCTAATGTGTACTGTCTAGTTTAGAGGAGTGAAATCTCTTGAACCATGTTTTGTAGGCTACAGAATCTTTAAAATTGAATCCATTTAGGTTTCTGTGCATAGATTCTCTGATGATAGCTATATGGCTGAATTGAGTTTGTTTCCTTTATGCAGATTCAGTATCTCGTGTCTCGGTGGGGTACAGATATTAATTCACTAGGTTCCTATAGTTATGACGCAGTTGGGAAACCGCATGGTCTGTATGAGAGGTTGCGGGTTCCTGTAGATAACTTATTCTTTGCAGGGGAAGCAACGAGTGTATTACATACAGGGTCTGTTCATGGTGCATACTCTACTGGAACAATGGCTGCTGAGGACTGCAGGATGCGTGTCCTAGAAAGATACGGGGAACTAGATATATTCCAGCCAGAGTTGGAAGAGGGTTCAGTCATTCCACTTCTGATATCTCGTATTTGA

Protein sequence

>MS.gene46317.t1

MESRIKTNPNSRKGLCYVNVDQQPRRSPSVIVIGGGMAGIAAARALHDASFQVVLLESRDRLGGRIHTDYSFGFPVDLGASWLHGVCNENPLAPLIGRLGLPLYRTCEDNSVLYDHDLESYALFDMEGNQVPQELVTEVGKTFEMILQETDNVRQEFSEDMSILRALSIVFERKPELRLEGLSHKVLQWYLCRMEGWFAADSDSISLKCWDQEELLPGGHGLMVRGYLPVIHTLAKGLDIRLGHRATKIVRGYNGVKVTTENGKTFVADAAIIAVPLGVLKANVIKFEPKLPDWKEAAIADIGVGVENKIILHFNNVFWPNVEFLGVVAETSYGCSYFLNLHKAAGHPVLVYMPAGRLAKDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSRWGTDINSLGSYSYDAVGKPHGLYERLRVPVDNLFFAGEATSVLHTGSVHGAYSTGTMAAEDCRMRVLERYGELDIFQPELEEGSVIPLLISRI