Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019144.t1 | XP_013459605.1 | 98.9 | 454 | 5 | 0 | 1 | 454 | 37 | 490 | 1.70E-261 | 911.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019144.t1 | Q9SKX5 | 81.0 | 452 | 86 | 0 | 3 | 454 | 39 | 490 | 2.7e-223 | 775.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019144.t1 | A0A072UW35 | 98.9 | 454 | 5 | 0 | 1 | 454 | 37 | 490 | 1.2e-261 | 911.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene019144 | MS.gene22232 | PPI |
MS.gene019144 | MS.gene92026 | PPI |
MS.gene019144 | MS.gene038090 | PPI |
MS.gene019144 | MS.gene017025 | PPI |
MS.gene22232 | MS.gene019144 | PPI |
MS.gene019144 | MS.gene049679 | PPI |
MS.gene019144 | MS.gene47679 | PPI |
MS.gene019144 | MS.gene008352 | PPI |
MS.gene019144 | MS.gene46961 | PPI |
MS.gene019144 | MS.gene46317 | PPI |
MS.gene019144 | MS.gene05030 | PPI |
MS.gene061581 | MS.gene019144 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019144.t1 | MTR_3g449620 | 98.899 | 454 | 5 | 0 | 1 | 454 | 37 | 490 | 0.0 | 927 |
MS.gene019144.t1 | MTR_5g090300 | 84.787 | 447 | 66 | 1 | 8 | 454 | 44 | 488 | 0.0 | 791 |
MS.gene019144.t1 | MTR_3g064370 | 63.816 | 456 | 163 | 1 | 1 | 454 | 37 | 492 | 0.0 | 617 |
MS.gene019144.t1 | MTR_3g064370 | 62.169 | 415 | 155 | 1 | 42 | 454 | 1 | 415 | 0.0 | 549 |
MS.gene019144.t1 | MTR_3g064370 | 67.139 | 353 | 116 | 0 | 1 | 353 | 37 | 389 | 2.05e-180 | 509 |
MS.gene019144.t1 | MTR_3g113170 | 34.573 | 457 | 252 | 12 | 2 | 418 | 891 | 1340 | 3.23e-62 | 219 |
MS.gene019144.t1 | MTR_3g113170 | 34.573 | 457 | 252 | 12 | 2 | 418 | 891 | 1340 | 4.69e-62 | 218 |
MS.gene019144.t1 | MTR_1g023510 | 34.402 | 468 | 255 | 14 | 2 | 418 | 875 | 1341 | 1.32e-60 | 214 |
MS.gene019144.t1 | MTR_5g087920 | 69.600 | 125 | 38 | 0 | 244 | 368 | 12 | 136 | 1.27e-54 | 179 |
MS.gene019144.t1 | MTR_3g055090 | 31.377 | 443 | 258 | 13 | 1 | 418 | 168 | 589 | 4.23e-50 | 182 |
MS.gene019144.t1 | MTR_6g084700 | 32.688 | 465 | 258 | 15 | 1 | 431 | 229 | 672 | 7.42e-50 | 181 |
MS.gene019144.t1 | MTR_1g050535 | 31.640 | 433 | 262 | 12 | 8 | 420 | 225 | 643 | 1.19e-43 | 164 |
MS.gene019144.t1 | MTR_1g050535 | 31.640 | 433 | 262 | 12 | 8 | 420 | 225 | 643 | 1.32e-43 | 164 |
MS.gene019144.t1 | MTR_8g464450 | 30.734 | 436 | 256 | 14 | 8 | 418 | 178 | 592 | 3.04e-43 | 162 |
MS.gene019144.t1 | MTR_3g033000 | 27.014 | 422 | 264 | 15 | 17 | 415 | 33 | 433 | 3.92e-27 | 114 |
MS.gene019144.t1 | MTR_3g033000 | 26.720 | 378 | 233 | 15 | 17 | 371 | 33 | 389 | 4.19e-19 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019144.t1 | AT2G43020 | 80.889 | 450 | 86 | 0 | 5 | 454 | 41 | 490 | 0.0 | 781 |
MS.gene019144.t1 | AT3G59050 | 79.515 | 454 | 90 | 1 | 1 | 454 | 38 | 488 | 0.0 | 750 |
MS.gene019144.t1 | AT1G65840 | 62.609 | 460 | 166 | 3 | 1 | 454 | 38 | 497 | 0.0 | 602 |
MS.gene019144.t1 | AT4G16310 | 33.195 | 482 | 246 | 14 | 2 | 418 | 628 | 1098 | 1.37e-59 | 211 |
MS.gene019144.t1 | AT4G16310 | 33.195 | 482 | 246 | 14 | 2 | 418 | 628 | 1098 | 1.37e-59 | 211 |
MS.gene019144.t1 | AT4G16310 | 33.195 | 482 | 246 | 14 | 2 | 418 | 628 | 1098 | 1.37e-59 | 211 |
MS.gene019144.t1 | AT4G16310 | 33.195 | 482 | 246 | 14 | 2 | 418 | 628 | 1098 | 1.37e-59 | 211 |
MS.gene019144.t1 | AT4G16310 | 33.195 | 482 | 246 | 14 | 2 | 418 | 628 | 1098 | 1.37e-59 | 211 |
MS.gene019144.t1 | AT3G10390 | 32.735 | 446 | 253 | 13 | 1 | 420 | 194 | 618 | 2.86e-48 | 177 |
MS.gene019144.t1 | AT3G10390 | 32.735 | 446 | 253 | 13 | 1 | 420 | 194 | 618 | 6.92e-48 | 176 |
MS.gene019144.t1 | AT3G10390 | 32.735 | 446 | 253 | 13 | 1 | 420 | 246 | 670 | 8.83e-48 | 176 |
MS.gene019144.t1 | AT3G10390 | 32.735 | 446 | 253 | 13 | 1 | 420 | 246 | 670 | 1.01e-47 | 176 |
MS.gene019144.t1 | AT3G13682 | 32.558 | 430 | 256 | 14 | 8 | 418 | 176 | 590 | 1.00e-45 | 169 |
MS.gene019144.t1 | AT1G62830 | 32.747 | 455 | 277 | 14 | 1 | 437 | 275 | 718 | 2.54e-45 | 169 |
MS.gene019144.t1 | AT5G13700 | 26.872 | 454 | 283 | 15 | 17 | 450 | 30 | 454 | 2.00e-33 | 131 |
MS.gene019144.t1 | AT4G29720 | 24.259 | 540 | 274 | 16 | 1 | 429 | 14 | 529 | 8.69e-29 | 119 |
Find 154 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCTTGTTTACATGCCTTC+TGG | 0.170041 | 3.3:-36336696 | MS.gene019144:CDS |
GCCAGTAATAACCTTAATTC+TGG | 0.245431 | 3.3:+36338058 | None:intergenic |
ACTTCAAGATGCTTCCTTTC+AGG | 0.247076 | 3.3:-36339859 | MS.gene019144:intron |
CAGCTATGCACTTTATGATA+TGG | 0.247797 | 3.3:-36338484 | MS.gene019144:CDS |
TGCTTCTGTGATTGGGAGGC+TGG | 0.251358 | 3.3:-36338749 | MS.gene019144:CDS |
GTCATTGGTGGTGGCATGGC+TGG | 0.253200 | 3.3:-36339900 | None:intergenic |
TTGAAAGGAAACCAGAATTA+AGG | 0.276512 | 3.3:-36338069 | MS.gene019144:intron |
TGGCCTAATGTAGAGTTCTT+AGG | 0.292763 | 3.3:-36336786 | MS.gene019144:CDS |
CCCTGGTGGTCACGGTCTTA+TGG | 0.297326 | 3.3:-36337168 | MS.gene019144:CDS |
TCCTTGTTTACATGCCTTCT+GGG | 0.312872 | 3.3:-36336695 | MS.gene019144:CDS |
GTGCAGCCTTGTGGAGATTA+AGG | 0.314384 | 3.3:+36336727 | None:intergenic |
AATACCACTGAAGTACCTTA+TGG | 0.326701 | 3.3:+36337940 | None:intergenic |
TCCTTCCAGTCTGGGAGCCT+TGG | 0.329966 | 3.3:+36336876 | None:intergenic |
AATCCACTTGCTTCTGTGAT+TGG | 0.334545 | 3.3:-36338757 | MS.gene019144:CDS |
ATGGCAGCTTCCTTCCAGTC+TGG | 0.360763 | 3.3:+36336867 | None:intergenic |
ATTCACACTGATTACTCGTT+TGG | 0.376822 | 3.3:-36338945 | MS.gene019144:CDS |
AAAGTTGTTCGGAGATATAA+TGG | 0.377389 | 3.3:-36336999 | MS.gene019144:CDS |
ATCCACTTGCTTCTGTGATT+GGG | 0.380631 | 3.3:-36338756 | MS.gene019144:CDS |
TTGGCTAGGGTATTTATAAC+AGG | 0.381256 | 3.3:+36337131 | None:intergenic |
GTTTGGCTTTCCTGTTGACC+TGG | 0.381528 | 3.3:-36338928 | MS.gene019144:CDS |
CACCCTTGACTGCAGGTTGG+AGG | 0.385422 | 3.3:-36337970 | MS.gene019144:intron |
ACGAGTAATCAGTGTGAATT+CGG | 0.387049 | 3.3:+36338949 | None:intergenic |
CCCTTGACTGCAGGTTGGAG+GGG | 0.387852 | 3.3:-36337968 | MS.gene019144:intron |
ACCCTTGACTGCAGGTTGGA+GGG | 0.394812 | 3.3:-36337969 | MS.gene019144:intron |
TGTGCTATATGACCATGATT+TGG | 0.395061 | 3.3:-36338692 | MS.gene019144:CDS |
GCTTCTGTGATTGGGAGGCT+GGG | 0.397137 | 3.3:-36338748 | MS.gene019144:CDS |
GTGGTCACGGTCTTATGGTC+AGG | 0.401367 | 3.3:-36337163 | MS.gene019144:CDS |
GTAGTTGCAGATACATCTTA+TGG | 0.402239 | 3.3:-36336762 | MS.gene019144:CDS |
ATCTTCAGCCGCCATCATTC+CGG | 0.404811 | 3.3:+36336037 | None:intergenic |
TTGCTTCCCCTGCGAAGAAC+AGG | 0.412914 | 3.3:+36336102 | None:intergenic |
CATGATGCTCCCAGGTCAAC+AGG | 0.413656 | 3.3:+36338918 | None:intergenic |
CCTTGTGTCTCGGTGGGGCT+CGG | 0.415357 | 3.3:-36336210 | MS.gene019144:CDS |
GTTGGAGGGGCTTGCCCATA+AGG | 0.416665 | 3.3:-36337955 | MS.gene019144:CDS |
ATCCCCACTAGTACGGTAAA+GGG | 0.417780 | 3.3:+36338720 | None:intergenic |
GAAGCTGCCATCGCTGAACT+TGG | 0.421827 | 3.3:-36336855 | MS.gene019144:CDS |
TACAATTTCACTGAATGGTT+GGG | 0.424536 | 3.3:-36337880 | MS.gene019144:CDS |
GAATCAAGTTCCTCAGGAAT+TGG | 0.425045 | 3.3:-36338457 | MS.gene019144:CDS |
AATTGAAAGACCACGCTGTA+TGG | 0.437376 | 3.3:+36338096 | None:intergenic |
GTACATACCTTTCCAAATCA+TGG | 0.438778 | 3.3:+36338680 | None:intergenic |
GGATTTGTTTCAGCCGGTGA+TGG | 0.439407 | 3.3:-36335979 | MS.gene019144:CDS |
AGGTTGTTCTCTTAGAGTCT+AGG | 0.441740 | 3.3:-36338986 | MS.gene019144:CDS |
ATACCACTGAAGTACCTTAT+GGG | 0.446467 | 3.3:+36337941 | None:intergenic |
GCTATTGTTGCTGTCCCTCT+TGG | 0.453416 | 3.3:-36336930 | MS.gene019144:CDS |
TCAGGGTCACAAAAGTTGTT+CGG | 0.454720 | 3.3:-36337010 | MS.gene019144:intron |
TGGCAGCTTCCTTCCAGTCT+GGG | 0.455520 | 3.3:+36336868 | None:intergenic |
ACTCCTAAGAACTCTACATT+AGG | 0.462175 | 3.3:+36336783 | None:intergenic |
ATGCGTGTGCTGGAGCGATA+TGG | 0.464060 | 3.3:-36336008 | MS.gene019144:CDS |
TGATGGCGGCTGAAGATTGC+AGG | 0.464362 | 3.3:-36336031 | MS.gene019144:CDS |
TCTGATACAATTTCACTGAA+TGG | 0.465141 | 3.3:-36337885 | MS.gene019144:CDS |
ATACAATTTCACTGAATGGT+TGG | 0.469296 | 3.3:-36337881 | MS.gene019144:CDS |
TTGAACCAAGGCTCCCAGAC+TGG | 0.469830 | 3.3:-36336881 | MS.gene019144:CDS |
TCATTGGTGGTGGCATGGCT+GGG | 0.470492 | 3.3:-36339899 | None:intergenic |
AGTAAGAAGTGAATTCAATC+AGG | 0.471322 | 3.3:-36338125 | MS.gene019144:CDS |
TCAGTACCTTGTGTCTCGGT+GGG | 0.472113 | 3.3:-36336216 | MS.gene019144:CDS |
CAGGAATTGGTAACAAAAGT+TGG | 0.478019 | 3.3:-36338444 | MS.gene019144:CDS |
GCAACAAGTATGAGCTATCC+AGG | 0.482634 | 3.3:-36336083 | MS.gene019144:CDS |
TGCATTCTCCACCGGAATGA+TGG | 0.483940 | 3.3:-36336048 | MS.gene019144:CDS |
TCAGCCGGTGATGGGAGAAA+TGG | 0.486040 | 3.3:-36335970 | MS.gene019144:CDS |
ACTATATCTACCTGTGTCCT+AGG | 0.488050 | 3.3:+36337093 | None:intergenic |
GAAGGCATGTAAACAAGGAC+AGG | 0.496470 | 3.3:+36336699 | None:intergenic |
AATGCACCATGGACAGATCC+TGG | 0.499465 | 3.3:+36336065 | None:intergenic |
GTAGATAACCTGTTCTTCGC+AGG | 0.500303 | 3.3:-36336110 | MS.gene019144:CDS |
GGTTGTTCTCTTAGAGTCTA+GGG | 0.501117 | 3.3:-36338985 | MS.gene019144:CDS |
AAGCTGCCATCGCTGAACTT+GGG | 0.502576 | 3.3:-36336854 | MS.gene019144:CDS |
TTGATATTCGCCTAGGACAC+AGG | 0.503732 | 3.3:-36337103 | MS.gene019144:intron |
TTCACTGAATGGTTGGGACC+AGG | 0.505370 | 3.3:-36337874 | MS.gene019144:intron |
CGAGCTGGATTTGTTTCAGC+CGG | 0.505755 | 3.3:-36335985 | MS.gene019144:CDS |
GTACTTCTCCCTGGTGGTCA+CGG | 0.506945 | 3.3:-36337176 | MS.gene019144:CDS |
TTTGGCTTTCCTGTTGACCT+GGG | 0.506960 | 3.3:-36338927 | MS.gene019144:CDS |
TCAGTGGTATTTATGCAGAA+TGG | 0.507222 | 3.3:-36337928 | MS.gene019144:CDS |
ACCATAAGACCGTGACCACC+AGG | 0.507322 | 3.3:+36337167 | None:intergenic |
GCCATCGCTGAACTTGGGGT+TGG | 0.509174 | 3.3:-36336849 | MS.gene019144:CDS |
GGGCTCGGATATAAATTCAC+TGG | 0.510358 | 3.3:-36336195 | MS.gene019144:CDS |
TGGTCACGGTCTTATGGTCA+GGG | 0.511034 | 3.3:-36337162 | MS.gene019144:CDS |
CTTCTGTGATTGGGAGGCTG+GGG | 0.512416 | 3.3:-36338747 | MS.gene019144:CDS |
GTTACCGGTGAGGAAGCATT+AGG | 0.513639 | 3.3:+36336594 | None:intergenic |
GATTTGTTTCAGCCGGTGAT+GGG | 0.513807 | 3.3:-36335978 | MS.gene019144:CDS |
TATCCCCACTAGTACGGTAA+AGG | 0.515136 | 3.3:+36338719 | None:intergenic |
GGATGGGAATCAAGTTCCTC+AGG | 0.515946 | 3.3:-36338463 | MS.gene019144:CDS |
AGATTGCAGGATGCGTGTGC+TGG | 0.516520 | 3.3:-36336018 | MS.gene019144:CDS |
GCGAAGAACAGGTTATCTAC+TGG | 0.519199 | 3.3:+36336113 | None:intergenic |
TATGCACTTTATGATATGGA+TGG | 0.519512 | 3.3:-36338480 | MS.gene019144:CDS |
GTAAAAGTGACTGTGGAAAG+TGG | 0.521969 | 3.3:-36336975 | MS.gene019144:CDS |
TACCCCTTTACCGTACTAGT+GGG | 0.524830 | 3.3:-36338723 | MS.gene019144:CDS |
TGACAGGAAGTACTTCTCCC+TGG | 0.530151 | 3.3:-36337185 | MS.gene019144:intron |
AGCTGCCATCGCTGAACTTG+GGG | 0.530403 | 3.3:-36336853 | MS.gene019144:CDS |
CACTTGCTTCTGTGATTGGG+AGG | 0.536467 | 3.3:-36338753 | MS.gene019144:CDS |
AAGGTTGCATGGAGTTTGCA+AGG | 0.539925 | 3.3:-36338782 | MS.gene019144:CDS |
CATATAGCTATGATCAAGTA+GGG | 0.542982 | 3.3:-36336169 | MS.gene019144:CDS |
ATTTATGCAGAATGGAGGGC+TGG | 0.545277 | 3.3:-36337920 | MS.gene019144:CDS |
TCATATAGCTATGATCAAGT+AGG | 0.546091 | 3.3:-36336170 | MS.gene019144:CDS |
GTCCATGGTGCATTCTCCAC+CGG | 0.547012 | 3.3:-36336056 | MS.gene019144:CDS |
AGCTTTACCATGATGCTCCC+AGG | 0.548394 | 3.3:+36338910 | None:intergenic |
TTCAGTACCTTGTGTCTCGG+TGG | 0.550816 | 3.3:-36336217 | MS.gene019144:CDS |
TAAAAGTGACTGTGGAAAGT+GGG | 0.550965 | 3.3:-36336974 | MS.gene019144:CDS |
GAATATCAAGACCCTTGGCT+AGG | 0.556541 | 3.3:+36337117 | None:intergenic |
GCCCAGAAGGCATGTAAACA+AGG | 0.556908 | 3.3:+36336694 | None:intergenic |
CAGGGTGACGTGCAGCCTTG+TGG | 0.561709 | 3.3:+36336718 | None:intergenic |
CAGAGTTATCCCCACTAGTA+CGG | 0.561719 | 3.3:+36338713 | None:intergenic |
CCTTCCTAATGCTTCCTCAC+CGG | 0.564781 | 3.3:-36336598 | MS.gene019144:intron |
GAGTCTAGGGAAAGACTTGG+TGG | 0.566001 | 3.3:-36338972 | MS.gene019144:CDS |
GAAAACATTTATTGCTGATG+CGG | 0.570570 | 3.3:-36336952 | MS.gene019144:CDS |
TCTTTGGCAAGCCGCCCAGA+AGG | 0.571780 | 3.3:+36336681 | None:intergenic |
AATATCAAGACCCTTGGCTA+GGG | 0.576929 | 3.3:+36337118 | None:intergenic |
ACCAAGGCTCCCAGACTGGA+AGG | 0.580515 | 3.3:-36336877 | MS.gene019144:CDS |
ATGCACTTTATGATATGGAT+GGG | 0.581658 | 3.3:-36338479 | MS.gene019144:CDS |
GAGGCCATTTCTCCCATCAC+CGG | 0.582511 | 3.3:+36335966 | None:intergenic |
CTGTTGACCTGGGAGCATCA+TGG | 0.583662 | 3.3:-36338917 | MS.gene019144:intron |
GGCTCGGATATAAATTCACT+GGG | 0.586636 | 3.3:-36336194 | MS.gene019144:CDS |
TAGATAACCTGTTCTTCGCA+GGG | 0.589108 | 3.3:-36336109 | MS.gene019144:CDS |
GTGGTATTTATGCAGAATGG+AGG | 0.590217 | 3.3:-36337925 | MS.gene019144:CDS |
TGTTATAAATACCCTAGCCA+AGG | 0.590267 | 3.3:-36337129 | MS.gene019144:CDS |
TACATACGAGATATCTGAAG+TGG | 0.590541 | 3.3:+36335933 | None:intergenic |
TAGGCGAATATCAAGACCCT+TGG | 0.592447 | 3.3:+36337112 | None:intergenic |
TAATGGAGTAAAAGTGACTG+TGG | 0.592728 | 3.3:-36336982 | MS.gene019144:CDS |
TCCAACCCCAAGTTCAGCGA+TGG | 0.600909 | 3.3:+36336848 | None:intergenic |
AGCCTCTCGTACAGTTCATG+TGG | 0.600917 | 3.3:+36336143 | None:intergenic |
ATTGAGCTCAAATACCTGAA+AGG | 0.603518 | 3.3:+36339845 | None:intergenic |
AGCTATCCAGGATCTGTCCA+TGG | 0.605077 | 3.3:-36336071 | MS.gene019144:CDS |
TTCAGCCGCCATCATTCCGG+TGG | 0.607572 | 3.3:+36336040 | None:intergenic |
AAGGGTCTTGATATTCGCCT+AGG | 0.607787 | 3.3:-36337110 | MS.gene019144:CDS |
AGATTCAGTACCTTGTGTCT+CGG | 0.611152 | 3.3:-36336220 | MS.gene019144:CDS |
TTACCCCTTTACCGTACTAG+TGG | 0.612175 | 3.3:-36338724 | MS.gene019144:CDS |
TGGTATTTATGCAGAATGGA+GGG | 0.621034 | 3.3:-36337924 | MS.gene019144:CDS |
TTGCTTTAAGTACACCAAGA+GGG | 0.622687 | 3.3:+36336916 | None:intergenic |
TATATGACCATGATTTGGAA+AGG | 0.625723 | 3.3:-36338687 | MS.gene019144:intron |
TTGGTGTACTTAAAGCAAAG+AGG | 0.628228 | 3.3:-36336911 | MS.gene019144:CDS |
AGAGGATATCATTTGAACCA+AGG | 0.632510 | 3.3:-36336893 | MS.gene019144:CDS |
CTCCCAATCACAGAAGCAAG+TGG | 0.634843 | 3.3:+36338754 | None:intergenic |
GCTGGAGCGATATGGCGAGC+TGG | 0.637460 | 3.3:-36336000 | MS.gene019144:CDS |
CCGAGCCCCACCGAGACACA+AGG | 0.638728 | 3.3:+36336210 | None:intergenic |
CTACTTCCTTAATCTCCACA+AGG | 0.640054 | 3.3:-36336733 | MS.gene019144:CDS |
CCGGTGAGGAAGCATTAGGA+AGG | 0.650028 | 3.3:+36336598 | None:intergenic |
ATTCTCCACCGGAATGATGG+CGG | 0.650475 | 3.3:-36336045 | MS.gene019144:CDS |
ACCCCTTTACCGTACTAGTG+GGG | 0.654223 | 3.3:-36338722 | MS.gene019144:CDS |
TCCCCACTAGTACGGTAAAG+GGG | 0.656059 | 3.3:+36338721 | None:intergenic |
AAATAGAGTGGTTACCGGTG+AGG | 0.656355 | 3.3:+36336584 | None:intergenic |
CAGTACCTTGTGTCTCGGTG+GGG | 0.656791 | 3.3:-36336215 | MS.gene019144:CDS |
TTAGAGTCTAGGGAAAGACT+TGG | 0.664498 | 3.3:-36338975 | MS.gene019144:CDS |
TATCTGAAGTGGGATAGTCA+AGG | 0.665598 | 3.3:+36335944 | None:intergenic |
ACATACGAGATATCTGAAGT+GGG | 0.666300 | 3.3:+36335934 | None:intergenic |
AACCACATGAACTGTACGAG+AGG | 0.669837 | 3.3:-36336145 | MS.gene019144:CDS |
GTTATAAATACCCTAGCCAA+GGG | 0.673303 | 3.3:-36337128 | MS.gene019144:CDS |
AGATAACCTGTTCTTCGCAG+GGG | 0.674456 | 3.3:-36336108 | MS.gene019144:CDS |
TTCCGGTGGAGAATGCACCA+TGG | 0.680901 | 3.3:+36336054 | None:intergenic |
TTTGCTTTAAGTACACCAAG+AGG | 0.681981 | 3.3:+36336915 | None:intergenic |
TTGCCCATAAGGTACTTCAG+TGG | 0.691649 | 3.3:-36337944 | MS.gene019144:CDS |
GGTCACGGTCTTATGGTCAG+GGG | 0.695895 | 3.3:-36337161 | MS.gene019144:CDS |
CTGAAGTGGGATAGTCAAGG+AGG | 0.698975 | 3.3:+36335947 | None:intergenic |
CCATAAGACCGTGACCACCA+GGG | 0.700855 | 3.3:+36337168 | None:intergenic |
AAGGCATGTAAACAAGGACA+GGG | 0.701185 | 3.3:+36336700 | None:intergenic |
TTGTTTACATGCCTTCTGGG+CGG | 0.705606 | 3.3:-36336692 | MS.gene019144:CDS |
CAGGAAGTACTTCTCCCTGG+TGG | 0.730430 | 3.3:-36337182 | MS.gene019144:CDS |
CAGGACATGTCCATACAGCG+TGG | 0.757921 | 3.3:-36338106 | MS.gene019144:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAATACAAAATAAAAA+AGG | + | chr3.3:36336353-36336372 | None:intergenic | 10.0% |
!! | ATCTAATTATATTTGTAAAA+TGG | - | chr3.3:36336176-36336195 | MS.gene019144:CDS | 10.0% |
!! | GAAAAATACAAAATAAAAAA+GGG | + | chr3.3:36336352-36336371 | None:intergenic | 10.0% |
!! | ATTAGATAAGTCTTTATTAT+AGG | - | chr3.3:36339332-36339351 | MS.gene019144:intron | 15.0% |
!! | GACAAATAATTAAAATACAT+AGG | + | chr3.3:36339567-36339586 | None:intergenic | 15.0% |
!! | TAATTATATTTGTAAAATGG+TGG | - | chr3.3:36336179-36336198 | MS.gene019144:CDS | 15.0% |
!! | AAACACATTTACATGATTAT+CGG | + | chr3.3:36338174-36338193 | None:intergenic | 20.0% |
!! | ATCATTTAGTGTGTAAATTA+AGG | + | chr3.3:36338043-36338062 | None:intergenic | 20.0% |
!! | GGTTCATAAAAATAAATACA+AGG | + | chr3.3:36336382-36336401 | None:intergenic | 20.0% |
!! | GTTTATTACAAAAGATTGTT+AGG | - | chr3.3:36337460-36337479 | MS.gene019144:intron | 20.0% |
!! | TGAAATAAGTAAAAATAGAG+TGG | + | chr3.3:36339248-36339267 | None:intergenic | 20.0% |
!! | TTGTAATAAACCAAATAACT+AGG | + | chr3.3:36337451-36337470 | None:intergenic | 20.0% |
!! | TTGTAGTATCAATATGAATA+TGG | + | chr3.3:36339414-36339433 | None:intergenic | 20.0% |
!!! | AAAAAATTGAAATTTCTAGC+TGG | + | chr3.3:36337236-36337255 | None:intergenic | 20.0% |
!!! | AGTATTTGAAACTATTTTAC+TGG | - | chr3.3:36337399-36337418 | MS.gene019144:intron | 20.0% |
!!! | CGCTTTGTTTTTTAATTTTT+TGG | - | chr3.3:36336806-36336825 | MS.gene019144:CDS | 20.0% |
!!! | GCTTTAATTTAGTTAATTTG+TGG | - | chr3.3:36339541-36339560 | MS.gene019144:intron | 20.0% |
!!! | GGAAAAAAATATTTTTACTG+TGG | + | chr3.3:36337585-36337604 | None:intergenic | 20.0% |
!!! | TACATTTTGAGAATGTATTT+TGG | - | chr3.3:36339011-36339030 | MS.gene019144:intron | 20.0% |
!!! | TGTTTTTTAATTTTTTGGTC+AGG | - | chr3.3:36336811-36336830 | MS.gene019144:CDS | 20.0% |
! | AAACAATGATTTATTGCTTG+TGG | - | chr3.3:36336064-36336083 | MS.gene019144:CDS | 25.0% |
! | AAACATTAGAAGAGATGATT+TGG | + | chr3.3:36337606-36337625 | None:intergenic | 25.0% |
! | AATGCATATTAATTGATTGC+AGG | + | chr3.3:36336763-36336782 | None:intergenic | 25.0% |
! | ACGTTGTATAAAACTAGAAA+AGG | + | chr3.3:36337262-36337281 | None:intergenic | 25.0% |
! | AGTAAAACTATAGCTCTTAA+AGG | - | chr3.3:36336283-36336302 | MS.gene019144:intron | 25.0% |
! | AGTTTACAAAGAATTTGATG+TGG | - | chr3.3:36336215-36336234 | MS.gene019144:CDS | 25.0% |
! | CAAATTATATCTTTCACTAC+AGG | + | chr3.3:36338097-36338116 | None:intergenic | 25.0% |
! | CGTTGTATAAAACTAGAAAA+GGG | + | chr3.3:36337261-36337280 | None:intergenic | 25.0% |
! | GACTTATCTAATCTTATGTT+TGG | + | chr3.3:36339324-36339343 | None:intergenic | 25.0% |
! | GATTAATTAAGCAACATAAC+AGG | + | chr3.3:36338777-36338796 | None:intergenic | 25.0% |
! | GTAAAACTATAGCTCTTAAA+GGG | - | chr3.3:36336284-36336303 | MS.gene019144:intron | 25.0% |
! | GTGTTTACTGATCTATAAAT+AGG | - | chr3.3:36338188-36338207 | MS.gene019144:intron | 25.0% |
! | GTTTACAAAGAATTTGATGT+GGG | - | chr3.3:36336216-36336235 | MS.gene019144:CDS | 25.0% |
! | TATTTAGTCTCCTAGTTATT+TGG | - | chr3.3:36337438-36337457 | MS.gene019144:intron | 25.0% |
! | TGATAGTAGAAAAGGTTATT+TGG | - | chr3.3:36337541-36337560 | MS.gene019144:intron | 25.0% |
! | TTTGCAATATGCTGTAATTA+GGG | + | chr3.3:36338558-36338577 | None:intergenic | 25.0% |
!! | AATTAATCTAACCTCTTTTC+AGG | - | chr3.3:36338789-36338808 | MS.gene019144:intron | 25.0% |
!! | ACAAAAGATTGTTAGGTTTT+GGG | - | chr3.3:36337467-36337486 | MS.gene019144:intron | 25.0% |
!! | ATTAATCTAACCTCTTTTCA+GGG | - | chr3.3:36338790-36338809 | MS.gene019144:intron | 25.0% |
!! | GTATTTTCTAATGTTCTTCA+TGG | + | chr3.3:36338486-36338505 | None:intergenic | 25.0% |
!! | GTCGTTTCTTATTTAATAAC+TGG | - | chr3.3:36336618-36336637 | MS.gene019144:CDS | 25.0% |
!! | GTTGATTTCTTTAAATTACC+TGG | + | chr3.3:36337964-36337983 | None:intergenic | 25.0% |
!! | GTTTCCTATTATTTGAAACT+TGG | - | chr3.3:36336721-36336740 | MS.gene019144:CDS | 25.0% |
!! | TACAAAAGATTGTTAGGTTT+TGG | - | chr3.3:36337466-36337485 | MS.gene019144:intron | 25.0% |
!!! | AGACATTTTTTCAATGTCTT+TGG | + | chr3.3:36339155-36339174 | None:intergenic | 25.0% |
!!! | ATTTGAAACTATTTTACTGG+AGG | - | chr3.3:36337402-36337421 | MS.gene019144:intron | 25.0% |
!!! | GTCTTTCAATTGTTTTTGAA+AGG | - | chr3.3:36337733-36337752 | MS.gene019144:intron | 25.0% |
AAAGTTGTTCGGAGATATAA+TGG | - | chr3.3:36338818-36338837 | MS.gene019144:intron | 30.0% | |
AAATCAGTATTATGGCTGTA+GGG | - | chr3.3:36338417-36338436 | MS.gene019144:CDS | 30.0% | |
AACCAAGGACAAAATTTCAA+AGG | + | chr3.3:36337656-36337675 | None:intergenic | 30.0% | |
ACATATTACATTGCCAACAT+TGG | + | chr3.3:36336428-36336447 | None:intergenic | 30.0% | |
ACCAGAATTAAGGTTATTAC+TGG | - | chr3.3:36337758-36337777 | MS.gene019144:intron | 30.0% | |
AGAATCAAACAAATCTAGCT+GGG | - | chr3.3:36338333-36338352 | MS.gene019144:intron | 30.0% | |
AGCTCCAAGTTTCAAATAAT+AGG | + | chr3.3:36336728-36336747 | None:intergenic | 30.0% | |
AGTAAAAATAGAGTGGTTAC+CGG | + | chr3.3:36339241-36339260 | None:intergenic | 30.0% | |
AGTAAGAAGTGAATTCAATC+AGG | - | chr3.3:36337692-36337711 | MS.gene019144:intron | 30.0% | |
ATAAAATGACCTGTCATGAA+AGG | + | chr3.3:36338375-36338394 | None:intergenic | 30.0% | |
ATACAATTTCACTGAATGGT+TGG | - | chr3.3:36337936-36337955 | MS.gene019144:CDS | 30.0% | |
ATATTACATTGCCAACATTG+GGG | + | chr3.3:36336426-36336445 | None:intergenic | 30.0% | |
ATGCACTTTATGATATGGAT+GGG | - | chr3.3:36337338-36337357 | MS.gene019144:intron | 30.0% | |
ATGCTGTGAAATCAGTATTA+TGG | - | chr3.3:36338409-36338428 | MS.gene019144:intron | 30.0% | |
CATATAGCTATGATCAAGTA+GGG | - | chr3.3:36339648-36339667 | MS.gene019144:intron | 30.0% | |
CATATTACATTGCCAACATT+GGG | + | chr3.3:36336427-36336446 | None:intergenic | 30.0% | |
GAAAACATTTATTGCTGATG+CGG | - | chr3.3:36338865-36338884 | MS.gene019144:intron | 30.0% | |
GATTGCAATTATCCGTTAAT+GGG | - | chr3.3:36336097-36336116 | MS.gene019144:CDS | 30.0% | |
GTTTGCAATATGCTGTAATT+AGG | + | chr3.3:36338559-36338578 | None:intergenic | 30.0% | |
TAAAAGATTCCTTTCATGAC+AGG | - | chr3.3:36338363-36338382 | MS.gene019144:intron | 30.0% | |
TAAATTAAGGACAAGAAGGT+GGG | + | chr3.3:36338030-36338049 | None:intergenic | 30.0% | |
TACAATTTCACTGAATGGTT+GGG | - | chr3.3:36337937-36337956 | MS.gene019144:CDS | 30.0% | |
TAGAATCAAACAAATCTAGC+TGG | - | chr3.3:36338332-36338351 | MS.gene019144:intron | 30.0% | |
TATGCACTTTATGATATGGA+TGG | - | chr3.3:36337337-36337356 | MS.gene019144:intron | 30.0% | |
TCATATAGCTATGATCAAGT+AGG | - | chr3.3:36339647-36339666 | MS.gene019144:intron | 30.0% | |
TCCTGTCAAAATATATTCAG+AGG | + | chr3.3:36338620-36338639 | None:intergenic | 30.0% | |
TCTGATACAATTTCACTGAA+TGG | - | chr3.3:36337932-36337951 | MS.gene019144:CDS | 30.0% | |
TGATTGCAATTATCCGTTAA+TGG | - | chr3.3:36336096-36336115 | MS.gene019144:CDS | 30.0% | |
TGTGTAAATTAAGGACAAGA+AGG | + | chr3.3:36338034-36338053 | None:intergenic | 30.0% | |
TTCTACTATCAAACCAGAAA+TGG | + | chr3.3:36337532-36337551 | None:intergenic | 30.0% | |
TTGAAAGGAAACCAGAATTA+AGG | - | chr3.3:36337748-36337767 | MS.gene019144:intron | 30.0% | |
TTTATATTTCCACCTCATCA+TGG | + | chr3.3:36336670-36336689 | None:intergenic | 30.0% | |
TTTCTAATGTTCTTCATGGA+AGG | + | chr3.3:36338482-36338501 | None:intergenic | 30.0% | |
! | ATGCTTGCTAGTTTAGATTT+GGG | - | chr3.3:36336241-36336260 | MS.gene019144:intron | 30.0% |
! | CAAAAGATTGTTAGGTTTTG+GGG | - | chr3.3:36337468-36337487 | MS.gene019144:intron | 30.0% |
! | TATATGACCATGATTTGGAA+AGG | - | chr3.3:36337130-36337149 | MS.gene019144:CDS | 30.0% |
! | TTTGTAAAATGGTGGAAATC+TGG | - | chr3.3:36336187-36336206 | MS.gene019144:CDS | 30.0% |
!! | ATACATATTTTTGTAGCCTG+TGG | - | chr3.3:36336643-36336662 | MS.gene019144:CDS | 30.0% |
!! | TTCTGGTTTGATAGTAGAAA+AGG | - | chr3.3:36337533-36337552 | MS.gene019144:intron | 30.0% |
!!! | AACCTTTGAAATTTTGTCCT+TGG | - | chr3.3:36337651-36337670 | MS.gene019144:intron | 30.0% |
!!! | ACCTCTGAATATATTTTGAC+AGG | - | chr3.3:36338616-36338635 | MS.gene019144:intron | 30.0% |
!!! | CTAGGTCAACTTAGTTTTAA+AGG | + | chr3.3:36338530-36338549 | None:intergenic | 30.0% |
!!! | CTAGTTTTATACAACGTAGA+AGG | - | chr3.3:36337265-36337284 | MS.gene019144:intron | 30.0% |
AAATTAAGGACAAGAAGGTG+GGG | + | chr3.3:36338029-36338048 | None:intergenic | 35.0% | |
ACGAGTAATCAGTGTGAATT+CGG | + | chr3.3:36336871-36336890 | None:intergenic | 35.0% | |
ACTCCTAAGAACTCTACATT+AGG | + | chr3.3:36339037-36339056 | None:intergenic | 35.0% | |
AGAGGATATCATTTGAACCA+AGG | - | chr3.3:36338924-36338943 | MS.gene019144:CDS | 35.0% | |
AGATCTCGATTAGAAGATAG+AGG | + | chr3.3:36336144-36336163 | None:intergenic | 35.0% | |
ATATGGTTCCATAGAACTAG+TGG | + | chr3.3:36339397-36339416 | None:intergenic | 35.0% | |
ATTGAGCTCAAATACCTGAA+AGG | + | chr3.3:36335975-36335994 | None:intergenic | 35.0% | |
CAAACACATGAATTTCTGTC+GGG | + | chr3.3:36336403-36336422 | None:intergenic | 35.0% | |
CACAGTAACACAATATACTG+AGG | + | chr3.3:36336469-36336488 | None:intergenic | 35.0% | |
CAGCTATGCACTTTATGATA+TGG | - | chr3.3:36337333-36337352 | MS.gene019144:intron | 35.0% | |
CATATCATAAAGTGCATAGC+TGG | + | chr3.3:36337335-36337354 | None:intergenic | 35.0% | |
CATGATTATCGGTCATAGAA+AGG | + | chr3.3:36338163-36338182 | None:intergenic | 35.0% | |
CATTCAGACAATCCCATTAA+CGG | + | chr3.3:36336112-36336131 | None:intergenic | 35.0% | |
CCGCTTAAAGAAAACAATCA+CGG | + | chr3.3:36337807-36337826 | None:intergenic | 35.0% | |
CTCATAGCATACACAGTAAA+GGG | + | chr3.3:36339521-36339540 | None:intergenic | 35.0% | |
GAAATCAGTATTATGGCTGT+AGG | - | chr3.3:36338416-36338435 | MS.gene019144:CDS | 35.0% | |
GATCTCGATTAGAAGATAGA+GGG | + | chr3.3:36336143-36336162 | None:intergenic | 35.0% | |
GCAAACACATGAATTTCTGT+CGG | + | chr3.3:36336404-36336423 | None:intergenic | 35.0% | |
GCCAGTAATAACCTTAATTC+TGG | + | chr3.3:36337762-36337781 | None:intergenic | 35.0% | |
GCTGTAATTAGGGTAAAACT+AGG | + | chr3.3:36338548-36338567 | None:intergenic | 35.0% | |
GTAAATTAAGGACAAGAAGG+TGG | + | chr3.3:36338031-36338050 | None:intergenic | 35.0% | |
GTACATACCTTTCCAAATCA+TGG | + | chr3.3:36337140-36337159 | None:intergenic | 35.0% | |
GTAGTTGCAGATACATCTTA+TGG | - | chr3.3:36339055-36339074 | MS.gene019144:intron | 35.0% | |
GTTATAAATACCCTAGCCAA+GGG | - | chr3.3:36338689-36338708 | MS.gene019144:CDS | 35.0% | |
TAAAAGTGACTGTGGAAAGT+GGG | - | chr3.3:36338843-36338862 | MS.gene019144:intron | 35.0% | |
TAAAGTGCATAGCTGGAATA+AGG | + | chr3.3:36337328-36337347 | None:intergenic | 35.0% | |
TAATGGAGTAAAAGTGACTG+TGG | - | chr3.3:36338835-36338854 | MS.gene019144:intron | 35.0% | |
TACATACGAGATATCTGAAG+TGG | + | chr3.3:36339887-36339906 | None:intergenic | 35.0% | |
TATTCGTCTGCATTTAACCA+AGG | + | chr3.3:36337671-36337690 | None:intergenic | 35.0% | |
TCAGTGGTATTTATGCAGAA+TGG | - | chr3.3:36337889-36337908 | MS.gene019144:CDS | 35.0% | |
TGCATGATTCCTAAAAAGGA+GGG | + | chr3.3:36336581-36336600 | None:intergenic | 35.0% | |
TGGTATTTATGCAGAATGGA+GGG | - | chr3.3:36337893-36337912 | MS.gene019144:CDS | 35.0% | |
TGTGCTATATGACCATGATT+TGG | - | chr3.3:36337125-36337144 | MS.gene019144:CDS | 35.0% | |
TGTTATAAATACCCTAGCCA+AGG | - | chr3.3:36338688-36338707 | MS.gene019144:CDS | 35.0% | |
TTGGTGTACTTAAAGCAAAG+AGG | - | chr3.3:36338906-36338925 | MS.gene019144:intron | 35.0% | |
TTTAGGCCTCACATTTCTTT+GGG | - | chr3.3:36339491-36339510 | MS.gene019144:intron | 35.0% | |
! | AATACCACTGAAGTACCTTA+TGG | + | chr3.3:36337880-36337899 | None:intergenic | 35.0% |
! | AATATGCATTTTCAGAGTCC+AGG | - | chr3.3:36336773-36336792 | MS.gene019144:CDS | 35.0% |
! | ACATACGAGATATCTGAAGT+GGG | + | chr3.3:36339886-36339905 | None:intergenic | 35.0% |
! | ACTTTTGTTACCAATTCCTG+AGG | + | chr3.3:36337373-36337392 | None:intergenic | 35.0% |
! | ATACCACTGAAGTACCTTAT+GGG | + | chr3.3:36337879-36337898 | None:intergenic | 35.0% |
! | ATATGCATTTTCAGAGTCCA+GGG | - | chr3.3:36336774-36336793 | MS.gene019144:CDS | 35.0% |
! | ATTCACACTGATTACTCGTT+TGG | - | chr3.3:36336872-36336891 | MS.gene019144:CDS | 35.0% |
! | CAGGAATTGGTAACAAAAGT+TGG | - | chr3.3:36337373-36337392 | MS.gene019144:intron | 35.0% |
! | CCGTGATTGTTTTCTTTAAG+CGG | - | chr3.3:36337804-36337823 | MS.gene019144:intron | 35.0% |
! | GATGCTTGCTAGTTTAGATT+TGG | - | chr3.3:36336240-36336259 | MS.gene019144:intron | 35.0% |
! | TTGCTTTAAGTACACCAAGA+GGG | + | chr3.3:36338904-36338923 | None:intergenic | 35.0% |
! | TTGGCTAGGGTATTTATAAC+AGG | + | chr3.3:36338689-36338708 | None:intergenic | 35.0% |
! | TTTCAGTTTTTAATCGCGCT+AGG | - | chr3.3:36339263-36339282 | MS.gene019144:intron | 35.0% |
! | TTTGCTTTAAGTACACCAAG+AGG | + | chr3.3:36338905-36338924 | None:intergenic | 35.0% |
!! | TTTTCCTGTTTAAGGTTGCA+TGG | - | chr3.3:36337024-36337043 | MS.gene019144:intron | 35.0% |
AAACATAGAGAGACCAGGTT+AGG | - | chr3.3:36338227-36338246 | MS.gene019144:intron | 40.0% | |
AAACCAGAAATGGAGTGCAA+AGG | + | chr3.3:36337522-36337541 | None:intergenic | 40.0% | |
AACATAGAGAGACCAGGTTA+GGG | - | chr3.3:36338228-36338247 | MS.gene019144:intron | 40.0% | |
AACTCCATGCAACCTTAAAC+AGG | + | chr3.3:36337031-36337050 | None:intergenic | 40.0% | |
AAGGCATGTAAACAAGGACA+GGG | + | chr3.3:36339120-36339139 | None:intergenic | 40.0% | |
AATATCAAGACCCTTGGCTA+GGG | + | chr3.3:36338702-36338721 | None:intergenic | 40.0% | |
AATCCACTTGCTTCTGTGAT+TGG | - | chr3.3:36337060-36337079 | MS.gene019144:intron | 40.0% | |
AATTGAAAGACCACGCTGTA+TGG | + | chr3.3:36337724-36337743 | None:intergenic | 40.0% | |
ACCAGGTTAGGGGATAAAAA+TGG | - | chr3.3:36338239-36338258 | MS.gene019144:intron | 40.0% | |
ACTATATCTACCTGTGTCCT+AGG | + | chr3.3:36338727-36338746 | None:intergenic | 40.0% | |
ACTTCAAGATGCTTCCTTTC+AGG | - | chr3.3:36335958-36335977 | MS.gene019144:CDS | 40.0% | |
AGATTCAGTACCTTGTGTCT+CGG | - | chr3.3:36339597-36339616 | MS.gene019144:intron | 40.0% | |
AGGTTGTTCTCTTAGAGTCT+AGG | - | chr3.3:36336831-36336850 | MS.gene019144:CDS | 40.0% | |
ATCAAACAAATCTAGCTGGG+AGG | - | chr3.3:36338336-36338355 | MS.gene019144:intron | 40.0% | |
ATCCACTTGCTTCTGTGATT+GGG | - | chr3.3:36337061-36337080 | MS.gene019144:intron | 40.0% | |
ATGATTCCTAAAAAGGAGGG+AGG | + | chr3.3:36336578-36336597 | None:intergenic | 40.0% | |
CAAAGAAATGTGAGGCCTAA+AGG | + | chr3.3:36339492-36339511 | None:intergenic | 40.0% | |
CCTCATAGCATACACAGTAA+AGG | + | chr3.3:36339522-36339541 | None:intergenic | 40.0% | |
CCTTTACTGTGTATGCTATG+AGG | - | chr3.3:36339519-36339538 | MS.gene019144:intron | 40.0% | |
CTACTTCCTTAATCTCCACA+AGG | - | chr3.3:36339084-36339103 | MS.gene019144:intron | 40.0% | |
CTCAGTTCACTAATCTACAC+AGG | - | chr3.3:36339371-36339390 | MS.gene019144:intron | 40.0% | |
CTCTCTTTCGTGTTACATAC+AGG | - | chr3.3:36338066-36338085 | MS.gene019144:intron | 40.0% | |
CTTTAGGCCTCACATTTCTT+TGG | - | chr3.3:36339490-36339509 | MS.gene019144:intron | 40.0% | |
GAATCAAGTTCCTCAGGAAT+TGG | - | chr3.3:36337360-36337379 | MS.gene019144:intron | 40.0% | |
GCTGTGCATGATTCCTAAAA+AGG | + | chr3.3:36336585-36336604 | None:intergenic | 40.0% | |
GGCTCGGATATAAATTCACT+GGG | - | chr3.3:36339623-36339642 | MS.gene019144:intron | 40.0% | |
GGTTGTTCTCTTAGAGTCTA+GGG | - | chr3.3:36336832-36336851 | MS.gene019144:CDS | 40.0% | |
GTAAAAGTGACTGTGGAAAG+TGG | - | chr3.3:36338842-36338861 | MS.gene019144:intron | 40.0% | |
GTAGATTAGTGAACTGAGCA+GGG | + | chr3.3:36339369-36339388 | None:intergenic | 40.0% | |
GTGCATGATTCCTAAAAAGG+AGG | + | chr3.3:36336582-36336601 | None:intergenic | 40.0% | |
GTGGTATTTATGCAGAATGG+AGG | - | chr3.3:36337892-36337911 | MS.gene019144:CDS | 40.0% | |
TAGATAACCTGTTCTTCGCA+GGG | - | chr3.3:36339708-36339727 | MS.gene019144:intron | 40.0% | |
TCAAACAAATCTAGCTGGGA+GGG | - | chr3.3:36338337-36338356 | MS.gene019144:intron | 40.0% | |
TCAGGGTCACAAAAGTTGTT+CGG | - | chr3.3:36338807-36338826 | MS.gene019144:intron | 40.0% | |
TCATGGAAGGTCTATGCAAA+TGG | + | chr3.3:36338469-36338488 | None:intergenic | 40.0% | |
TGAAAACCTCACCTACCTTT+AGG | - | chr3.3:36339474-36339493 | MS.gene019144:intron | 40.0% | |
TGGCCTAATGTAGAGTTCTT+AGG | - | chr3.3:36339031-36339050 | MS.gene019144:intron | 40.0% | |
TGTAGATTAGTGAACTGAGC+AGG | + | chr3.3:36339370-36339389 | None:intergenic | 40.0% | |
TTACTGTGGAAATGCATAGC+AGG | + | chr3.3:36337571-36337590 | None:intergenic | 40.0% | |
TTAGAGTCTAGGGAAAGACT+TGG | - | chr3.3:36336842-36336861 | MS.gene019144:CDS | 40.0% | |
! | AAGGCATCACTATAAGGTAG+AGG | + | chr3.3:36337503-36337522 | None:intergenic | 40.0% |
! | ACTTTTGTGACCCTGAAAAG+AGG | + | chr3.3:36338803-36338822 | None:intergenic | 40.0% |
! | GCACACTCTTTTCCTGTTTA+AGG | - | chr3.3:36337016-36337035 | MS.gene019144:intron | 40.0% |
! | TATCTGAAGTGGGATAGTCA+AGG | + | chr3.3:36339876-36339895 | None:intergenic | 40.0% |
! | TCCTTGTTTACATGCCTTCT+GGG | - | chr3.3:36339122-36339141 | MS.gene019144:intron | 40.0% |
!! | AGTGCAAAGGCATCACTATA+AGG | + | chr3.3:36337509-36337528 | None:intergenic | 40.0% |
!! | TCCATTTTTATCCCCTAACC+TGG | + | chr3.3:36338243-36338262 | None:intergenic | 40.0% |
AAATAGAGTGGTTACCGGTG+AGG | + | chr3.3:36339236-36339255 | None:intergenic | 45.0% | |
AACCACATGAACTGTACGAG+AGG | - | chr3.3:36339672-36339691 | MS.gene019144:intron | 45.0% | |
AAGGGTCTTGATATTCGCCT+AGG | - | chr3.3:36338707-36338726 | MS.gene019144:CDS | 45.0% | |
AAGGTTGCATGGAGTTTGCA+AGG | - | chr3.3:36337035-36337054 | MS.gene019144:intron | 45.0% | |
ACATAGAGAGACCAGGTTAG+GGG | - | chr3.3:36338229-36338248 | MS.gene019144:intron | 45.0% | |
AGATAACCTGTTCTTCGCAG+GGG | - | chr3.3:36339709-36339728 | MS.gene019144:intron | 45.0% | |
ATCCCCACTAGTACGGTAAA+GGG | + | chr3.3:36337100-36337119 | None:intergenic | 45.0% | |
ATGCCTTTGCACTCCATTTC+TGG | - | chr3.3:36337516-36337535 | MS.gene019144:intron | 45.0% | |
ATGTTGAAGACTCATGCACC+TGG | + | chr3.3:36338136-36338155 | None:intergenic | 45.0% | |
ATTTATGCAGAATGGAGGGC+TGG | - | chr3.3:36337897-36337916 | MS.gene019144:CDS | 45.0% | |
CAAACAAATCTAGCTGGGAG+GGG | - | chr3.3:36338338-36338357 | MS.gene019144:intron | 45.0% | |
CAGAGTTATCCCCACTAGTA+CGG | + | chr3.3:36337107-36337126 | None:intergenic | 45.0% | |
CGTTGAAACATAGAGAGACC+AGG | - | chr3.3:36338222-36338241 | MS.gene019144:intron | 45.0% | |
GAAATGTGAGGCCTAAAGGT+AGG | + | chr3.3:36339488-36339507 | None:intergenic | 45.0% | |
GAATATCAAGACCCTTGGCT+AGG | + | chr3.3:36338703-36338722 | None:intergenic | 45.0% | |
GCAACAAGTATGAGCTATCC+AGG | - | chr3.3:36339734-36339753 | MS.gene019144:intron | 45.0% | |
GCGAAGAACAGGTTATCTAC+TGG | + | chr3.3:36339707-36339726 | None:intergenic | 45.0% | |
GGGCTCGGATATAAATTCAC+TGG | - | chr3.3:36339622-36339641 | MS.gene019144:intron | 45.0% | |
GTAGATAACCTGTTCTTCGC+AGG | - | chr3.3:36339707-36339726 | MS.gene019144:intron | 45.0% | |
TACCCCTTTACCGTACTAGT+GGG | - | chr3.3:36337094-36337113 | MS.gene019144:intron | 45.0% | |
TAGGCGAATATCAAGACCCT+TGG | + | chr3.3:36338708-36338727 | None:intergenic | 45.0% | |
TATCCCCACTAGTACGGTAA+AGG | + | chr3.3:36337101-36337120 | None:intergenic | 45.0% | |
TCATGTGTTTGCCCCAATGT+TGG | - | chr3.3:36336412-36336431 | MS.gene019144:intron | 45.0% | |
TGTAAAGTCGTCTCATAGCC+AGG | - | chr3.3:36338115-36338134 | MS.gene019144:CDS | 45.0% | |
TTACCCCTTTACCGTACTAG+TGG | - | chr3.3:36337093-36337112 | MS.gene019144:intron | 45.0% | |
TTGATATTCGCCTAGGACAC+AGG | - | chr3.3:36338714-36338733 | MS.gene019144:CDS | 45.0% | |
TTGTTTACATGCCTTCTGGG+CGG | - | chr3.3:36339125-36339144 | MS.gene019144:intron | 45.0% | |
! | ACAAAGCGCTATTTAGTCCC+TGG | + | chr3.3:36336794-36336813 | None:intergenic | 45.0% |
! | GAAGGCATGTAAACAAGGAC+AGG | + | chr3.3:36339121-36339140 | None:intergenic | 45.0% |
! | GATTTGTTTCAGCCGGTGAT+GGG | - | chr3.3:36339839-36339858 | MS.gene019144:intron | 45.0% |
! | GTCCTTGTTTACATGCCTTC+TGG | - | chr3.3:36339121-36339140 | MS.gene019144:intron | 45.0% |
! | TTGCCCATAAGGTACTTCAG+TGG | - | chr3.3:36337873-36337892 | MS.gene019144:intron | 45.0% |
!! | CACAAGGTACTGAATCTGCA+TGG | + | chr3.3:36339594-36339613 | None:intergenic | 45.0% |
!! | TACACAGGCCACTAGTTCTA+TGG | - | chr3.3:36339386-36339405 | MS.gene019144:intron | 45.0% |
!! | TTTGGCTTTCCTGTTGACCT+GGG | - | chr3.3:36336890-36336909 | MS.gene019144:CDS | 45.0% |
!! | TAATTTAATAAGAAAATAAA+AGG | + | chr3.3:36336992-36337011 | None:intergenic | 5.0% |
!!! | TATTTTCTTATTAAATTAAA+AGG | - | chr3.3:36336994-36337013 | MS.gene019144:CDS | 5.0% |
AACTGAGCAGGGTGAACTAG+AGG | + | chr3.3:36339358-36339377 | None:intergenic | 50.0% | |
AAGCTGCCATCGCTGAACTT+GGG | - | chr3.3:36338963-36338982 | MS.gene019144:CDS | 50.0% | |
AATGCACCATGGACAGATCC+TGG | + | chr3.3:36339755-36339774 | None:intergenic | 50.0% | |
ACCCCTTTACCGTACTAGTG+GGG | - | chr3.3:36337095-36337114 | MS.gene019144:intron | 50.0% | |
AGCCTCTCGTACAGTTCATG+TGG | + | chr3.3:36339677-36339696 | None:intergenic | 50.0% | |
AGCTATCCAGGATCTGTCCA+TGG | - | chr3.3:36339746-36339765 | MS.gene019144:intron | 50.0% | |
AGCTTTACCATGATGCTCCC+AGG | + | chr3.3:36336910-36336929 | None:intergenic | 50.0% | |
ATCTTCAGCCGCCATCATTC+CGG | + | chr3.3:36339783-36339802 | None:intergenic | 50.0% | |
ATTCTCCACCGGAATGATGG+CGG | - | chr3.3:36339772-36339791 | MS.gene019144:intron | 50.0% | |
CACTTGCTTCTGTGATTGGG+AGG | - | chr3.3:36337064-36337083 | MS.gene019144:intron | 50.0% | |
CCTAAAAAGGAGGGAGGTAG+AGG | + | chr3.3:36336572-36336591 | None:intergenic | 50.0% | |
CCTTCCTAATGCTTCCTCAC+CGG | - | chr3.3:36339219-36339238 | MS.gene019144:intron | 50.0% | |
CTCCCAATCACAGAAGCAAG+TGG | + | chr3.3:36337066-36337085 | None:intergenic | 50.0% | |
CTGAAGTGGGATAGTCAAGG+AGG | + | chr3.3:36339873-36339892 | None:intergenic | 50.0% | |
GAGTCTAGGGAAAGACTTGG+TGG | - | chr3.3:36336845-36336864 | MS.gene019144:CDS | 50.0% | |
GCTATTGTTGCTGTCCCTCT+TGG | - | chr3.3:36338887-36338906 | MS.gene019144:intron | 50.0% | |
GGATGGGAATCAAGTTCCTC+AGG | - | chr3.3:36337354-36337373 | MS.gene019144:intron | 50.0% | |
GGTCAGCCCAAAGAAATGTG+AGG | + | chr3.3:36339500-36339519 | None:intergenic | 50.0% | |
TCAGTACCTTGTGTCTCGGT+GGG | - | chr3.3:36339601-36339620 | MS.gene019144:intron | 50.0% | |
TCCCCACTAGTACGGTAAAG+GGG | + | chr3.3:36337099-36337118 | None:intergenic | 50.0% | |
TGATTTCCACCCTTGACTGC+AGG | - | chr3.3:36337840-36337859 | MS.gene019144:intron | 50.0% | |
TGCATTCTCCACCGGAATGA+TGG | - | chr3.3:36339769-36339788 | MS.gene019144:intron | 50.0% | |
TTCACTGAATGGTTGGGACC+AGG | - | chr3.3:36337943-36337962 | MS.gene019144:CDS | 50.0% | |
TTCAGTACCTTGTGTCTCGG+TGG | - | chr3.3:36339600-36339619 | MS.gene019144:intron | 50.0% | |
! | CCTCTACCTCCCTCCTTTTT+AGG | - | chr3.3:36336569-36336588 | MS.gene019144:intron | 50.0% |
! | CGAGCTGGATTTGTTTCAGC+CGG | - | chr3.3:36339832-36339851 | MS.gene019144:intron | 50.0% |
! | GCCCAGAAGGCATGTAAACA+AGG | + | chr3.3:36339126-36339145 | None:intergenic | 50.0% |
! | GGATTTGTTTCAGCCGGTGA+TGG | - | chr3.3:36339838-36339857 | MS.gene019144:intron | 50.0% |
! | GTGCAGCCTTGTGGAGATTA+AGG | + | chr3.3:36339093-36339112 | None:intergenic | 50.0% |
! | TGGTCACGGTCTTATGGTCA+GGG | - | chr3.3:36338655-36338674 | MS.gene019144:intron | 50.0% |
!! | GTTACCGGTGAGGAAGCATT+AGG | + | chr3.3:36339226-36339245 | None:intergenic | 50.0% |
!! | GTTTGGCTTTCCTGTTGACC+TGG | - | chr3.3:36336889-36336908 | MS.gene019144:CDS | 50.0% |
!! | TGACAGGAAGTACTTCTCCC+TGG | - | chr3.3:36338632-36338651 | MS.gene019144:intron | 50.0% |
AAGGACAAGAAGGTGGGGCA+GGG | + | chr3.3:36338024-36338043 | None:intergenic | 55.0% | |
ACCATAAGACCGTGACCACC+AGG | + | chr3.3:36338653-36338672 | None:intergenic | 55.0% | |
AGATTGCAGGATGCGTGTGC+TGG | - | chr3.3:36339799-36339818 | MS.gene019144:intron | 55.0% | |
AGCTGCCATCGCTGAACTTG+GGG | - | chr3.3:36338964-36338983 | MS.gene019144:CDS | 55.0% | |
ATGCGTGTGCTGGAGCGATA+TGG | - | chr3.3:36339809-36339828 | MS.gene019144:intron | 55.0% | |
ATGGCAGCTTCCTTCCAGTC+TGG | + | chr3.3:36338953-36338972 | None:intergenic | 55.0% | |
CAGGACATGTCCATACAGCG+TGG | - | chr3.3:36337711-36337730 | MS.gene019144:intron | 55.0% | |
CAGTACCTTGTGTCTCGGTG+GGG | - | chr3.3:36339602-36339621 | MS.gene019144:intron | 55.0% | |
CATGATGCTCCCAGGTCAAC+AGG | + | chr3.3:36336902-36336921 | None:intergenic | 55.0% | |
CCATAAGACCGTGACCACCA+GGG | + | chr3.3:36338652-36338671 | None:intergenic | 55.0% | |
CTTCTGTGATTGGGAGGCTG+GGG | - | chr3.3:36337070-36337089 | MS.gene019144:intron | 55.0% | |
GAAGCTGCCATCGCTGAACT+TGG | - | chr3.3:36338962-36338981 | MS.gene019144:CDS | 55.0% | |
GAGGCCATTTCTCCCATCAC+CGG | + | chr3.3:36339854-36339873 | None:intergenic | 55.0% | |
GCTTCTGTGATTGGGAGGCT+GGG | - | chr3.3:36337069-36337088 | MS.gene019144:intron | 55.0% | |
GTACTTCTCCCTGGTGGTCA+CGG | - | chr3.3:36338641-36338660 | MS.gene019144:intron | 55.0% | |
GTAGCCTGTGGTCCATGATG+AGG | - | chr3.3:36336655-36336674 | MS.gene019144:CDS | 55.0% | |
GTCCATGGTGCATTCTCCAC+CGG | - | chr3.3:36339761-36339780 | MS.gene019144:intron | 55.0% | |
GTGAGGCCTAAAGGTAGGTG+AGG | + | chr3.3:36339483-36339502 | None:intergenic | 55.0% | |
TAAGGACAAGAAGGTGGGGC+AGG | + | chr3.3:36338025-36338044 | None:intergenic | 55.0% | |
TCCAACCCCAAGTTCAGCGA+TGG | + | chr3.3:36338972-36338991 | None:intergenic | 55.0% | |
TCCACCTCATCATGGACCAC+AGG | + | chr3.3:36336662-36336681 | None:intergenic | 55.0% | |
TGCTTCTGTGATTGGGAGGC+TGG | - | chr3.3:36337068-36337087 | MS.gene019144:intron | 55.0% | |
TGGCAGCTTCCTTCCAGTCT+GGG | + | chr3.3:36338952-36338971 | None:intergenic | 55.0% | |
TTCCACCCTTGACTGCAGGT+TGG | - | chr3.3:36337844-36337863 | MS.gene019144:intron | 55.0% | |
TTCCGGTGGAGAATGCACCA+TGG | + | chr3.3:36339766-36339785 | None:intergenic | 55.0% | |
TTGAACCAAGGCTCCCAGAC+TGG | - | chr3.3:36338936-36338955 | MS.gene019144:CDS | 55.0% | |
TTGCTTCCCCTGCGAAGAAC+AGG | + | chr3.3:36339718-36339737 | None:intergenic | 55.0% | |
! | ACCCTTGACTGCAGGTTGGA+GGG | - | chr3.3:36337848-36337867 | MS.gene019144:intron | 55.0% |
! | GGTCACGGTCTTATGGTCAG+GGG | - | chr3.3:36338656-36338675 | MS.gene019144:intron | 55.0% |
! | GTGGTCACGGTCTTATGGTC+AGG | - | chr3.3:36338654-36338673 | MS.gene019144:intron | 55.0% |
!! | CAGGAAGTACTTCTCCCTGG+TGG | - | chr3.3:36338635-36338654 | MS.gene019144:intron | 55.0% |
!! | CCGGTGAGGAAGCATTAGGA+AGG | + | chr3.3:36339222-36339241 | None:intergenic | 55.0% |
!! | CTGTTGACCTGGGAGCATCA+TGG | - | chr3.3:36336900-36336919 | MS.gene019144:CDS | 55.0% |
!! | TCAGCCGGTGATGGGAGAAA+TGG | - | chr3.3:36339847-36339866 | MS.gene019144:intron | 55.0% |
!! | TGATGGCGGCTGAAGATTGC+AGG | - | chr3.3:36339786-36339805 | MS.gene019144:intron | 55.0% |
ACCAAGGCTCCCAGACTGGA+AGG | - | chr3.3:36338940-36338959 | MS.gene019144:CDS | 60.0% | |
AGGACAAGAAGGTGGGGCAG+GGG | + | chr3.3:36338023-36338042 | None:intergenic | 60.0% | |
CCCCTCCAACCTGCAGTCAA+GGG | + | chr3.3:36337852-36337871 | None:intergenic | 60.0% | |
CCCTGGTGGTCACGGTCTTA+TGG | - | chr3.3:36338649-36338668 | MS.gene019144:intron | 60.0% | |
CTCCAACCTGCAGTCAAGGG+TGG | + | chr3.3:36337849-36337868 | None:intergenic | 60.0% | |
GCCATCGCTGAACTTGGGGT+TGG | - | chr3.3:36338968-36338987 | MS.gene019144:CDS | 60.0% | |
GCCTGTGGTCCATGATGAGG+TGG | - | chr3.3:36336658-36336677 | MS.gene019144:CDS | 60.0% | |
GTTGGAGGGGCTTGCCCATA+AGG | - | chr3.3:36337862-36337881 | MS.gene019144:intron | 60.0% | |
TCCTTCCAGTCTGGGAGCCT+TGG | + | chr3.3:36338944-36338963 | None:intergenic | 60.0% | |
TCTTTGGCAAGCCGCCCAGA+AGG | + | chr3.3:36339139-36339158 | None:intergenic | 60.0% | |
TTCAGCCGCCATCATTCCGG+TGG | + | chr3.3:36339780-36339799 | None:intergenic | 60.0% | |
! | CACCCTTGACTGCAGGTTGG+AGG | - | chr3.3:36337847-36337866 | MS.gene019144:intron | 60.0% |
! | CCCTTGACTGCAGGTTGGAG+GGG | - | chr3.3:36337849-36337868 | MS.gene019144:intron | 60.0% |
CAGGGTGACGTGCAGCCTTG+TGG | + | chr3.3:36339102-36339121 | None:intergenic | 65.0% | |
CCTTGTGTCTCGGTGGGGCT+CGG | - | chr3.3:36339607-36339626 | MS.gene019144:intron | 65.0% | |
GACAAGAAGGTGGGGCAGGG+GGG | + | chr3.3:36338021-36338040 | None:intergenic | 65.0% | |
GCCCCTCCAACCTGCAGTCA+AGG | + | chr3.3:36337853-36337872 | None:intergenic | 65.0% | |
GCTGGAGCGATATGGCGAGC+TGG | - | chr3.3:36339817-36339836 | MS.gene019144:intron | 65.0% | |
GGACAAGAAGGTGGGGCAGG+GGG | + | chr3.3:36338022-36338041 | None:intergenic | 65.0% | |
CCGAGCCCCACCGAGACACA+AGG | + | chr3.3:36339610-36339629 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 36335932 | 36339907 | 36335932 | ID=MS.gene019144 |
chr3.3 | mRNA | 36335932 | 36339907 | 36335932 | ID=MS.gene019144.t1;Parent=MS.gene019144 |
chr3.3 | exon | 36339860 | 36339907 | 36339860 | ID=MS.gene019144.t1.exon1;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36339860 | 36339907 | 36339860 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36338918 | 36339006 | 36338918 | ID=MS.gene019144.t1.exon2;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36338918 | 36339006 | 36338918 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36338688 | 36338801 | 36338688 | ID=MS.gene019144.t1.exon3;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36338688 | 36338801 | 36338688 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36338416 | 36338503 | 36338416 | ID=MS.gene019144.t1.exon4;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36338416 | 36338503 | 36338416 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36338070 | 36338155 | 36338070 | ID=MS.gene019144.t1.exon5;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36338070 | 36338155 | 36338070 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36337875 | 36337977 | 36337875 | ID=MS.gene019144.t1.exon6;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36337875 | 36337977 | 36337875 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36337104 | 36337201 | 36337104 | ID=MS.gene019144.t1.exon7;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36337104 | 36337201 | 36337104 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36336599 | 36337028 | 36336599 | ID=MS.gene019144.t1.exon8;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36336599 | 36337028 | 36336599 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
chr3.3 | exon | 36335932 | 36336240 | 36335932 | ID=MS.gene019144.t1.exon9;Parent=MS.gene019144.t1 |
chr3.3 | CDS | 36335932 | 36336240 | 36335932 | ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1 |
Gene Sequence |
Protein sequence |