AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019144


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019144.t1 MTR_3g449620 98.899 454 5 0 1 454 37 490 0.0 927
MS.gene019144.t1 MTR_5g090300 84.787 447 66 1 8 454 44 488 0.0 791
MS.gene019144.t1 MTR_3g064370 63.816 456 163 1 1 454 37 492 0.0 617
MS.gene019144.t1 MTR_3g064370 62.169 415 155 1 42 454 1 415 0.0 549
MS.gene019144.t1 MTR_3g064370 67.139 353 116 0 1 353 37 389 2.05e-180 509
MS.gene019144.t1 MTR_3g113170 34.573 457 252 12 2 418 891 1340 3.23e-62 219
MS.gene019144.t1 MTR_3g113170 34.573 457 252 12 2 418 891 1340 4.69e-62 218
MS.gene019144.t1 MTR_1g023510 34.402 468 255 14 2 418 875 1341 1.32e-60 214
MS.gene019144.t1 MTR_5g087920 69.600 125 38 0 244 368 12 136 1.27e-54 179
MS.gene019144.t1 MTR_3g055090 31.377 443 258 13 1 418 168 589 4.23e-50 182
MS.gene019144.t1 MTR_6g084700 32.688 465 258 15 1 431 229 672 7.42e-50 181
MS.gene019144.t1 MTR_1g050535 31.640 433 262 12 8 420 225 643 1.19e-43 164
MS.gene019144.t1 MTR_1g050535 31.640 433 262 12 8 420 225 643 1.32e-43 164
MS.gene019144.t1 MTR_8g464450 30.734 436 256 14 8 418 178 592 3.04e-43 162
MS.gene019144.t1 MTR_3g033000 27.014 422 264 15 17 415 33 433 3.92e-27 114
MS.gene019144.t1 MTR_3g033000 26.720 378 233 15 17 371 33 389 4.19e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019144.t1 AT2G43020 80.889 450 86 0 5 454 41 490 0.0 781
MS.gene019144.t1 AT3G59050 79.515 454 90 1 1 454 38 488 0.0 750
MS.gene019144.t1 AT1G65840 62.609 460 166 3 1 454 38 497 0.0 602
MS.gene019144.t1 AT4G16310 33.195 482 246 14 2 418 628 1098 1.37e-59 211
MS.gene019144.t1 AT4G16310 33.195 482 246 14 2 418 628 1098 1.37e-59 211
MS.gene019144.t1 AT4G16310 33.195 482 246 14 2 418 628 1098 1.37e-59 211
MS.gene019144.t1 AT4G16310 33.195 482 246 14 2 418 628 1098 1.37e-59 211
MS.gene019144.t1 AT4G16310 33.195 482 246 14 2 418 628 1098 1.37e-59 211
MS.gene019144.t1 AT3G10390 32.735 446 253 13 1 420 194 618 2.86e-48 177
MS.gene019144.t1 AT3G10390 32.735 446 253 13 1 420 194 618 6.92e-48 176
MS.gene019144.t1 AT3G10390 32.735 446 253 13 1 420 246 670 8.83e-48 176
MS.gene019144.t1 AT3G10390 32.735 446 253 13 1 420 246 670 1.01e-47 176
MS.gene019144.t1 AT3G13682 32.558 430 256 14 8 418 176 590 1.00e-45 169
MS.gene019144.t1 AT1G62830 32.747 455 277 14 1 437 275 718 2.54e-45 169
MS.gene019144.t1 AT5G13700 26.872 454 283 15 17 450 30 454 2.00e-33 131
MS.gene019144.t1 AT4G29720 24.259 540 274 16 1 429 14 529 8.69e-29 119

Find 154 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTGTTTACATGCCTTC+TGG 0.170041 3.3:-36336696 MS.gene019144:CDS
GCCAGTAATAACCTTAATTC+TGG 0.245431 3.3:+36338058 None:intergenic
ACTTCAAGATGCTTCCTTTC+AGG 0.247076 3.3:-36339859 MS.gene019144:intron
CAGCTATGCACTTTATGATA+TGG 0.247797 3.3:-36338484 MS.gene019144:CDS
TGCTTCTGTGATTGGGAGGC+TGG 0.251358 3.3:-36338749 MS.gene019144:CDS
GTCATTGGTGGTGGCATGGC+TGG 0.253200 3.3:-36339900 None:intergenic
TTGAAAGGAAACCAGAATTA+AGG 0.276512 3.3:-36338069 MS.gene019144:intron
TGGCCTAATGTAGAGTTCTT+AGG 0.292763 3.3:-36336786 MS.gene019144:CDS
CCCTGGTGGTCACGGTCTTA+TGG 0.297326 3.3:-36337168 MS.gene019144:CDS
TCCTTGTTTACATGCCTTCT+GGG 0.312872 3.3:-36336695 MS.gene019144:CDS
GTGCAGCCTTGTGGAGATTA+AGG 0.314384 3.3:+36336727 None:intergenic
AATACCACTGAAGTACCTTA+TGG 0.326701 3.3:+36337940 None:intergenic
TCCTTCCAGTCTGGGAGCCT+TGG 0.329966 3.3:+36336876 None:intergenic
AATCCACTTGCTTCTGTGAT+TGG 0.334545 3.3:-36338757 MS.gene019144:CDS
ATGGCAGCTTCCTTCCAGTC+TGG 0.360763 3.3:+36336867 None:intergenic
ATTCACACTGATTACTCGTT+TGG 0.376822 3.3:-36338945 MS.gene019144:CDS
AAAGTTGTTCGGAGATATAA+TGG 0.377389 3.3:-36336999 MS.gene019144:CDS
ATCCACTTGCTTCTGTGATT+GGG 0.380631 3.3:-36338756 MS.gene019144:CDS
TTGGCTAGGGTATTTATAAC+AGG 0.381256 3.3:+36337131 None:intergenic
GTTTGGCTTTCCTGTTGACC+TGG 0.381528 3.3:-36338928 MS.gene019144:CDS
CACCCTTGACTGCAGGTTGG+AGG 0.385422 3.3:-36337970 MS.gene019144:intron
ACGAGTAATCAGTGTGAATT+CGG 0.387049 3.3:+36338949 None:intergenic
CCCTTGACTGCAGGTTGGAG+GGG 0.387852 3.3:-36337968 MS.gene019144:intron
ACCCTTGACTGCAGGTTGGA+GGG 0.394812 3.3:-36337969 MS.gene019144:intron
TGTGCTATATGACCATGATT+TGG 0.395061 3.3:-36338692 MS.gene019144:CDS
GCTTCTGTGATTGGGAGGCT+GGG 0.397137 3.3:-36338748 MS.gene019144:CDS
GTGGTCACGGTCTTATGGTC+AGG 0.401367 3.3:-36337163 MS.gene019144:CDS
GTAGTTGCAGATACATCTTA+TGG 0.402239 3.3:-36336762 MS.gene019144:CDS
ATCTTCAGCCGCCATCATTC+CGG 0.404811 3.3:+36336037 None:intergenic
TTGCTTCCCCTGCGAAGAAC+AGG 0.412914 3.3:+36336102 None:intergenic
CATGATGCTCCCAGGTCAAC+AGG 0.413656 3.3:+36338918 None:intergenic
CCTTGTGTCTCGGTGGGGCT+CGG 0.415357 3.3:-36336210 MS.gene019144:CDS
GTTGGAGGGGCTTGCCCATA+AGG 0.416665 3.3:-36337955 MS.gene019144:CDS
ATCCCCACTAGTACGGTAAA+GGG 0.417780 3.3:+36338720 None:intergenic
GAAGCTGCCATCGCTGAACT+TGG 0.421827 3.3:-36336855 MS.gene019144:CDS
TACAATTTCACTGAATGGTT+GGG 0.424536 3.3:-36337880 MS.gene019144:CDS
GAATCAAGTTCCTCAGGAAT+TGG 0.425045 3.3:-36338457 MS.gene019144:CDS
AATTGAAAGACCACGCTGTA+TGG 0.437376 3.3:+36338096 None:intergenic
GTACATACCTTTCCAAATCA+TGG 0.438778 3.3:+36338680 None:intergenic
GGATTTGTTTCAGCCGGTGA+TGG 0.439407 3.3:-36335979 MS.gene019144:CDS
AGGTTGTTCTCTTAGAGTCT+AGG 0.441740 3.3:-36338986 MS.gene019144:CDS
ATACCACTGAAGTACCTTAT+GGG 0.446467 3.3:+36337941 None:intergenic
GCTATTGTTGCTGTCCCTCT+TGG 0.453416 3.3:-36336930 MS.gene019144:CDS
TCAGGGTCACAAAAGTTGTT+CGG 0.454720 3.3:-36337010 MS.gene019144:intron
TGGCAGCTTCCTTCCAGTCT+GGG 0.455520 3.3:+36336868 None:intergenic
ACTCCTAAGAACTCTACATT+AGG 0.462175 3.3:+36336783 None:intergenic
ATGCGTGTGCTGGAGCGATA+TGG 0.464060 3.3:-36336008 MS.gene019144:CDS
TGATGGCGGCTGAAGATTGC+AGG 0.464362 3.3:-36336031 MS.gene019144:CDS
TCTGATACAATTTCACTGAA+TGG 0.465141 3.3:-36337885 MS.gene019144:CDS
ATACAATTTCACTGAATGGT+TGG 0.469296 3.3:-36337881 MS.gene019144:CDS
TTGAACCAAGGCTCCCAGAC+TGG 0.469830 3.3:-36336881 MS.gene019144:CDS
TCATTGGTGGTGGCATGGCT+GGG 0.470492 3.3:-36339899 None:intergenic
AGTAAGAAGTGAATTCAATC+AGG 0.471322 3.3:-36338125 MS.gene019144:CDS
TCAGTACCTTGTGTCTCGGT+GGG 0.472113 3.3:-36336216 MS.gene019144:CDS
CAGGAATTGGTAACAAAAGT+TGG 0.478019 3.3:-36338444 MS.gene019144:CDS
GCAACAAGTATGAGCTATCC+AGG 0.482634 3.3:-36336083 MS.gene019144:CDS
TGCATTCTCCACCGGAATGA+TGG 0.483940 3.3:-36336048 MS.gene019144:CDS
TCAGCCGGTGATGGGAGAAA+TGG 0.486040 3.3:-36335970 MS.gene019144:CDS
ACTATATCTACCTGTGTCCT+AGG 0.488050 3.3:+36337093 None:intergenic
GAAGGCATGTAAACAAGGAC+AGG 0.496470 3.3:+36336699 None:intergenic
AATGCACCATGGACAGATCC+TGG 0.499465 3.3:+36336065 None:intergenic
GTAGATAACCTGTTCTTCGC+AGG 0.500303 3.3:-36336110 MS.gene019144:CDS
GGTTGTTCTCTTAGAGTCTA+GGG 0.501117 3.3:-36338985 MS.gene019144:CDS
AAGCTGCCATCGCTGAACTT+GGG 0.502576 3.3:-36336854 MS.gene019144:CDS
TTGATATTCGCCTAGGACAC+AGG 0.503732 3.3:-36337103 MS.gene019144:intron
TTCACTGAATGGTTGGGACC+AGG 0.505370 3.3:-36337874 MS.gene019144:intron
CGAGCTGGATTTGTTTCAGC+CGG 0.505755 3.3:-36335985 MS.gene019144:CDS
GTACTTCTCCCTGGTGGTCA+CGG 0.506945 3.3:-36337176 MS.gene019144:CDS
TTTGGCTTTCCTGTTGACCT+GGG 0.506960 3.3:-36338927 MS.gene019144:CDS
TCAGTGGTATTTATGCAGAA+TGG 0.507222 3.3:-36337928 MS.gene019144:CDS
ACCATAAGACCGTGACCACC+AGG 0.507322 3.3:+36337167 None:intergenic
GCCATCGCTGAACTTGGGGT+TGG 0.509174 3.3:-36336849 MS.gene019144:CDS
GGGCTCGGATATAAATTCAC+TGG 0.510358 3.3:-36336195 MS.gene019144:CDS
TGGTCACGGTCTTATGGTCA+GGG 0.511034 3.3:-36337162 MS.gene019144:CDS
CTTCTGTGATTGGGAGGCTG+GGG 0.512416 3.3:-36338747 MS.gene019144:CDS
GTTACCGGTGAGGAAGCATT+AGG 0.513639 3.3:+36336594 None:intergenic
GATTTGTTTCAGCCGGTGAT+GGG 0.513807 3.3:-36335978 MS.gene019144:CDS
TATCCCCACTAGTACGGTAA+AGG 0.515136 3.3:+36338719 None:intergenic
GGATGGGAATCAAGTTCCTC+AGG 0.515946 3.3:-36338463 MS.gene019144:CDS
AGATTGCAGGATGCGTGTGC+TGG 0.516520 3.3:-36336018 MS.gene019144:CDS
GCGAAGAACAGGTTATCTAC+TGG 0.519199 3.3:+36336113 None:intergenic
TATGCACTTTATGATATGGA+TGG 0.519512 3.3:-36338480 MS.gene019144:CDS
GTAAAAGTGACTGTGGAAAG+TGG 0.521969 3.3:-36336975 MS.gene019144:CDS
TACCCCTTTACCGTACTAGT+GGG 0.524830 3.3:-36338723 MS.gene019144:CDS
TGACAGGAAGTACTTCTCCC+TGG 0.530151 3.3:-36337185 MS.gene019144:intron
AGCTGCCATCGCTGAACTTG+GGG 0.530403 3.3:-36336853 MS.gene019144:CDS
CACTTGCTTCTGTGATTGGG+AGG 0.536467 3.3:-36338753 MS.gene019144:CDS
AAGGTTGCATGGAGTTTGCA+AGG 0.539925 3.3:-36338782 MS.gene019144:CDS
CATATAGCTATGATCAAGTA+GGG 0.542982 3.3:-36336169 MS.gene019144:CDS
ATTTATGCAGAATGGAGGGC+TGG 0.545277 3.3:-36337920 MS.gene019144:CDS
TCATATAGCTATGATCAAGT+AGG 0.546091 3.3:-36336170 MS.gene019144:CDS
GTCCATGGTGCATTCTCCAC+CGG 0.547012 3.3:-36336056 MS.gene019144:CDS
AGCTTTACCATGATGCTCCC+AGG 0.548394 3.3:+36338910 None:intergenic
TTCAGTACCTTGTGTCTCGG+TGG 0.550816 3.3:-36336217 MS.gene019144:CDS
TAAAAGTGACTGTGGAAAGT+GGG 0.550965 3.3:-36336974 MS.gene019144:CDS
GAATATCAAGACCCTTGGCT+AGG 0.556541 3.3:+36337117 None:intergenic
GCCCAGAAGGCATGTAAACA+AGG 0.556908 3.3:+36336694 None:intergenic
CAGGGTGACGTGCAGCCTTG+TGG 0.561709 3.3:+36336718 None:intergenic
CAGAGTTATCCCCACTAGTA+CGG 0.561719 3.3:+36338713 None:intergenic
CCTTCCTAATGCTTCCTCAC+CGG 0.564781 3.3:-36336598 MS.gene019144:intron
GAGTCTAGGGAAAGACTTGG+TGG 0.566001 3.3:-36338972 MS.gene019144:CDS
GAAAACATTTATTGCTGATG+CGG 0.570570 3.3:-36336952 MS.gene019144:CDS
TCTTTGGCAAGCCGCCCAGA+AGG 0.571780 3.3:+36336681 None:intergenic
AATATCAAGACCCTTGGCTA+GGG 0.576929 3.3:+36337118 None:intergenic
ACCAAGGCTCCCAGACTGGA+AGG 0.580515 3.3:-36336877 MS.gene019144:CDS
ATGCACTTTATGATATGGAT+GGG 0.581658 3.3:-36338479 MS.gene019144:CDS
GAGGCCATTTCTCCCATCAC+CGG 0.582511 3.3:+36335966 None:intergenic
CTGTTGACCTGGGAGCATCA+TGG 0.583662 3.3:-36338917 MS.gene019144:intron
GGCTCGGATATAAATTCACT+GGG 0.586636 3.3:-36336194 MS.gene019144:CDS
TAGATAACCTGTTCTTCGCA+GGG 0.589108 3.3:-36336109 MS.gene019144:CDS
GTGGTATTTATGCAGAATGG+AGG 0.590217 3.3:-36337925 MS.gene019144:CDS
TGTTATAAATACCCTAGCCA+AGG 0.590267 3.3:-36337129 MS.gene019144:CDS
TACATACGAGATATCTGAAG+TGG 0.590541 3.3:+36335933 None:intergenic
TAGGCGAATATCAAGACCCT+TGG 0.592447 3.3:+36337112 None:intergenic
TAATGGAGTAAAAGTGACTG+TGG 0.592728 3.3:-36336982 MS.gene019144:CDS
TCCAACCCCAAGTTCAGCGA+TGG 0.600909 3.3:+36336848 None:intergenic
AGCCTCTCGTACAGTTCATG+TGG 0.600917 3.3:+36336143 None:intergenic
ATTGAGCTCAAATACCTGAA+AGG 0.603518 3.3:+36339845 None:intergenic
AGCTATCCAGGATCTGTCCA+TGG 0.605077 3.3:-36336071 MS.gene019144:CDS
TTCAGCCGCCATCATTCCGG+TGG 0.607572 3.3:+36336040 None:intergenic
AAGGGTCTTGATATTCGCCT+AGG 0.607787 3.3:-36337110 MS.gene019144:CDS
AGATTCAGTACCTTGTGTCT+CGG 0.611152 3.3:-36336220 MS.gene019144:CDS
TTACCCCTTTACCGTACTAG+TGG 0.612175 3.3:-36338724 MS.gene019144:CDS
TGGTATTTATGCAGAATGGA+GGG 0.621034 3.3:-36337924 MS.gene019144:CDS
TTGCTTTAAGTACACCAAGA+GGG 0.622687 3.3:+36336916 None:intergenic
TATATGACCATGATTTGGAA+AGG 0.625723 3.3:-36338687 MS.gene019144:intron
TTGGTGTACTTAAAGCAAAG+AGG 0.628228 3.3:-36336911 MS.gene019144:CDS
AGAGGATATCATTTGAACCA+AGG 0.632510 3.3:-36336893 MS.gene019144:CDS
CTCCCAATCACAGAAGCAAG+TGG 0.634843 3.3:+36338754 None:intergenic
GCTGGAGCGATATGGCGAGC+TGG 0.637460 3.3:-36336000 MS.gene019144:CDS
CCGAGCCCCACCGAGACACA+AGG 0.638728 3.3:+36336210 None:intergenic
CTACTTCCTTAATCTCCACA+AGG 0.640054 3.3:-36336733 MS.gene019144:CDS
CCGGTGAGGAAGCATTAGGA+AGG 0.650028 3.3:+36336598 None:intergenic
ATTCTCCACCGGAATGATGG+CGG 0.650475 3.3:-36336045 MS.gene019144:CDS
ACCCCTTTACCGTACTAGTG+GGG 0.654223 3.3:-36338722 MS.gene019144:CDS
TCCCCACTAGTACGGTAAAG+GGG 0.656059 3.3:+36338721 None:intergenic
AAATAGAGTGGTTACCGGTG+AGG 0.656355 3.3:+36336584 None:intergenic
CAGTACCTTGTGTCTCGGTG+GGG 0.656791 3.3:-36336215 MS.gene019144:CDS
TTAGAGTCTAGGGAAAGACT+TGG 0.664498 3.3:-36338975 MS.gene019144:CDS
TATCTGAAGTGGGATAGTCA+AGG 0.665598 3.3:+36335944 None:intergenic
ACATACGAGATATCTGAAGT+GGG 0.666300 3.3:+36335934 None:intergenic
AACCACATGAACTGTACGAG+AGG 0.669837 3.3:-36336145 MS.gene019144:CDS
GTTATAAATACCCTAGCCAA+GGG 0.673303 3.3:-36337128 MS.gene019144:CDS
AGATAACCTGTTCTTCGCAG+GGG 0.674456 3.3:-36336108 MS.gene019144:CDS
TTCCGGTGGAGAATGCACCA+TGG 0.680901 3.3:+36336054 None:intergenic
TTTGCTTTAAGTACACCAAG+AGG 0.681981 3.3:+36336915 None:intergenic
TTGCCCATAAGGTACTTCAG+TGG 0.691649 3.3:-36337944 MS.gene019144:CDS
GGTCACGGTCTTATGGTCAG+GGG 0.695895 3.3:-36337161 MS.gene019144:CDS
CTGAAGTGGGATAGTCAAGG+AGG 0.698975 3.3:+36335947 None:intergenic
CCATAAGACCGTGACCACCA+GGG 0.700855 3.3:+36337168 None:intergenic
AAGGCATGTAAACAAGGACA+GGG 0.701185 3.3:+36336700 None:intergenic
TTGTTTACATGCCTTCTGGG+CGG 0.705606 3.3:-36336692 MS.gene019144:CDS
CAGGAAGTACTTCTCCCTGG+TGG 0.730430 3.3:-36337182 MS.gene019144:CDS
CAGGACATGTCCATACAGCG+TGG 0.757921 3.3:-36338106 MS.gene019144:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAATACAAAATAAAAA+AGG + chr3.3:36336353-36336372 None:intergenic 10.0%
!! ATCTAATTATATTTGTAAAA+TGG - chr3.3:36336176-36336195 MS.gene019144:CDS 10.0%
!! GAAAAATACAAAATAAAAAA+GGG + chr3.3:36336352-36336371 None:intergenic 10.0%
!! ATTAGATAAGTCTTTATTAT+AGG - chr3.3:36339332-36339351 MS.gene019144:intron 15.0%
!! GACAAATAATTAAAATACAT+AGG + chr3.3:36339567-36339586 None:intergenic 15.0%
!! TAATTATATTTGTAAAATGG+TGG - chr3.3:36336179-36336198 MS.gene019144:CDS 15.0%
!! AAACACATTTACATGATTAT+CGG + chr3.3:36338174-36338193 None:intergenic 20.0%
!! ATCATTTAGTGTGTAAATTA+AGG + chr3.3:36338043-36338062 None:intergenic 20.0%
!! GGTTCATAAAAATAAATACA+AGG + chr3.3:36336382-36336401 None:intergenic 20.0%
!! GTTTATTACAAAAGATTGTT+AGG - chr3.3:36337460-36337479 MS.gene019144:intron 20.0%
!! TGAAATAAGTAAAAATAGAG+TGG + chr3.3:36339248-36339267 None:intergenic 20.0%
!! TTGTAATAAACCAAATAACT+AGG + chr3.3:36337451-36337470 None:intergenic 20.0%
!! TTGTAGTATCAATATGAATA+TGG + chr3.3:36339414-36339433 None:intergenic 20.0%
!!! AAAAAATTGAAATTTCTAGC+TGG + chr3.3:36337236-36337255 None:intergenic 20.0%
!!! AGTATTTGAAACTATTTTAC+TGG - chr3.3:36337399-36337418 MS.gene019144:intron 20.0%
!!! CGCTTTGTTTTTTAATTTTT+TGG - chr3.3:36336806-36336825 MS.gene019144:CDS 20.0%
!!! GCTTTAATTTAGTTAATTTG+TGG - chr3.3:36339541-36339560 MS.gene019144:intron 20.0%
!!! GGAAAAAAATATTTTTACTG+TGG + chr3.3:36337585-36337604 None:intergenic 20.0%
!!! TACATTTTGAGAATGTATTT+TGG - chr3.3:36339011-36339030 MS.gene019144:intron 20.0%
!!! TGTTTTTTAATTTTTTGGTC+AGG - chr3.3:36336811-36336830 MS.gene019144:CDS 20.0%
! AAACAATGATTTATTGCTTG+TGG - chr3.3:36336064-36336083 MS.gene019144:CDS 25.0%
! AAACATTAGAAGAGATGATT+TGG + chr3.3:36337606-36337625 None:intergenic 25.0%
! AATGCATATTAATTGATTGC+AGG + chr3.3:36336763-36336782 None:intergenic 25.0%
! ACGTTGTATAAAACTAGAAA+AGG + chr3.3:36337262-36337281 None:intergenic 25.0%
! AGTAAAACTATAGCTCTTAA+AGG - chr3.3:36336283-36336302 MS.gene019144:intron 25.0%
! AGTTTACAAAGAATTTGATG+TGG - chr3.3:36336215-36336234 MS.gene019144:CDS 25.0%
! CAAATTATATCTTTCACTAC+AGG + chr3.3:36338097-36338116 None:intergenic 25.0%
! CGTTGTATAAAACTAGAAAA+GGG + chr3.3:36337261-36337280 None:intergenic 25.0%
! GACTTATCTAATCTTATGTT+TGG + chr3.3:36339324-36339343 None:intergenic 25.0%
! GATTAATTAAGCAACATAAC+AGG + chr3.3:36338777-36338796 None:intergenic 25.0%
! GTAAAACTATAGCTCTTAAA+GGG - chr3.3:36336284-36336303 MS.gene019144:intron 25.0%
! GTGTTTACTGATCTATAAAT+AGG - chr3.3:36338188-36338207 MS.gene019144:intron 25.0%
! GTTTACAAAGAATTTGATGT+GGG - chr3.3:36336216-36336235 MS.gene019144:CDS 25.0%
! TATTTAGTCTCCTAGTTATT+TGG - chr3.3:36337438-36337457 MS.gene019144:intron 25.0%
! TGATAGTAGAAAAGGTTATT+TGG - chr3.3:36337541-36337560 MS.gene019144:intron 25.0%
! TTTGCAATATGCTGTAATTA+GGG + chr3.3:36338558-36338577 None:intergenic 25.0%
!! AATTAATCTAACCTCTTTTC+AGG - chr3.3:36338789-36338808 MS.gene019144:intron 25.0%
!! ACAAAAGATTGTTAGGTTTT+GGG - chr3.3:36337467-36337486 MS.gene019144:intron 25.0%
!! ATTAATCTAACCTCTTTTCA+GGG - chr3.3:36338790-36338809 MS.gene019144:intron 25.0%
!! GTATTTTCTAATGTTCTTCA+TGG + chr3.3:36338486-36338505 None:intergenic 25.0%
!! GTCGTTTCTTATTTAATAAC+TGG - chr3.3:36336618-36336637 MS.gene019144:CDS 25.0%
!! GTTGATTTCTTTAAATTACC+TGG + chr3.3:36337964-36337983 None:intergenic 25.0%
!! GTTTCCTATTATTTGAAACT+TGG - chr3.3:36336721-36336740 MS.gene019144:CDS 25.0%
!! TACAAAAGATTGTTAGGTTT+TGG - chr3.3:36337466-36337485 MS.gene019144:intron 25.0%
!!! AGACATTTTTTCAATGTCTT+TGG + chr3.3:36339155-36339174 None:intergenic 25.0%
!!! ATTTGAAACTATTTTACTGG+AGG - chr3.3:36337402-36337421 MS.gene019144:intron 25.0%
!!! GTCTTTCAATTGTTTTTGAA+AGG - chr3.3:36337733-36337752 MS.gene019144:intron 25.0%
AAAGTTGTTCGGAGATATAA+TGG - chr3.3:36338818-36338837 MS.gene019144:intron 30.0%
AAATCAGTATTATGGCTGTA+GGG - chr3.3:36338417-36338436 MS.gene019144:CDS 30.0%
AACCAAGGACAAAATTTCAA+AGG + chr3.3:36337656-36337675 None:intergenic 30.0%
ACATATTACATTGCCAACAT+TGG + chr3.3:36336428-36336447 None:intergenic 30.0%
ACCAGAATTAAGGTTATTAC+TGG - chr3.3:36337758-36337777 MS.gene019144:intron 30.0%
AGAATCAAACAAATCTAGCT+GGG - chr3.3:36338333-36338352 MS.gene019144:intron 30.0%
AGCTCCAAGTTTCAAATAAT+AGG + chr3.3:36336728-36336747 None:intergenic 30.0%
AGTAAAAATAGAGTGGTTAC+CGG + chr3.3:36339241-36339260 None:intergenic 30.0%
AGTAAGAAGTGAATTCAATC+AGG - chr3.3:36337692-36337711 MS.gene019144:intron 30.0%
ATAAAATGACCTGTCATGAA+AGG + chr3.3:36338375-36338394 None:intergenic 30.0%
ATACAATTTCACTGAATGGT+TGG - chr3.3:36337936-36337955 MS.gene019144:CDS 30.0%
ATATTACATTGCCAACATTG+GGG + chr3.3:36336426-36336445 None:intergenic 30.0%
ATGCACTTTATGATATGGAT+GGG - chr3.3:36337338-36337357 MS.gene019144:intron 30.0%
ATGCTGTGAAATCAGTATTA+TGG - chr3.3:36338409-36338428 MS.gene019144:intron 30.0%
CATATAGCTATGATCAAGTA+GGG - chr3.3:36339648-36339667 MS.gene019144:intron 30.0%
CATATTACATTGCCAACATT+GGG + chr3.3:36336427-36336446 None:intergenic 30.0%
GAAAACATTTATTGCTGATG+CGG - chr3.3:36338865-36338884 MS.gene019144:intron 30.0%
GATTGCAATTATCCGTTAAT+GGG - chr3.3:36336097-36336116 MS.gene019144:CDS 30.0%
GTTTGCAATATGCTGTAATT+AGG + chr3.3:36338559-36338578 None:intergenic 30.0%
TAAAAGATTCCTTTCATGAC+AGG - chr3.3:36338363-36338382 MS.gene019144:intron 30.0%
TAAATTAAGGACAAGAAGGT+GGG + chr3.3:36338030-36338049 None:intergenic 30.0%
TACAATTTCACTGAATGGTT+GGG - chr3.3:36337937-36337956 MS.gene019144:CDS 30.0%
TAGAATCAAACAAATCTAGC+TGG - chr3.3:36338332-36338351 MS.gene019144:intron 30.0%
TATGCACTTTATGATATGGA+TGG - chr3.3:36337337-36337356 MS.gene019144:intron 30.0%
TCATATAGCTATGATCAAGT+AGG - chr3.3:36339647-36339666 MS.gene019144:intron 30.0%
TCCTGTCAAAATATATTCAG+AGG + chr3.3:36338620-36338639 None:intergenic 30.0%
TCTGATACAATTTCACTGAA+TGG - chr3.3:36337932-36337951 MS.gene019144:CDS 30.0%
TGATTGCAATTATCCGTTAA+TGG - chr3.3:36336096-36336115 MS.gene019144:CDS 30.0%
TGTGTAAATTAAGGACAAGA+AGG + chr3.3:36338034-36338053 None:intergenic 30.0%
TTCTACTATCAAACCAGAAA+TGG + chr3.3:36337532-36337551 None:intergenic 30.0%
TTGAAAGGAAACCAGAATTA+AGG - chr3.3:36337748-36337767 MS.gene019144:intron 30.0%
TTTATATTTCCACCTCATCA+TGG + chr3.3:36336670-36336689 None:intergenic 30.0%
TTTCTAATGTTCTTCATGGA+AGG + chr3.3:36338482-36338501 None:intergenic 30.0%
! ATGCTTGCTAGTTTAGATTT+GGG - chr3.3:36336241-36336260 MS.gene019144:intron 30.0%
! CAAAAGATTGTTAGGTTTTG+GGG - chr3.3:36337468-36337487 MS.gene019144:intron 30.0%
! TATATGACCATGATTTGGAA+AGG - chr3.3:36337130-36337149 MS.gene019144:CDS 30.0%
! TTTGTAAAATGGTGGAAATC+TGG - chr3.3:36336187-36336206 MS.gene019144:CDS 30.0%
!! ATACATATTTTTGTAGCCTG+TGG - chr3.3:36336643-36336662 MS.gene019144:CDS 30.0%
!! TTCTGGTTTGATAGTAGAAA+AGG - chr3.3:36337533-36337552 MS.gene019144:intron 30.0%
!!! AACCTTTGAAATTTTGTCCT+TGG - chr3.3:36337651-36337670 MS.gene019144:intron 30.0%
!!! ACCTCTGAATATATTTTGAC+AGG - chr3.3:36338616-36338635 MS.gene019144:intron 30.0%
!!! CTAGGTCAACTTAGTTTTAA+AGG + chr3.3:36338530-36338549 None:intergenic 30.0%
!!! CTAGTTTTATACAACGTAGA+AGG - chr3.3:36337265-36337284 MS.gene019144:intron 30.0%
AAATTAAGGACAAGAAGGTG+GGG + chr3.3:36338029-36338048 None:intergenic 35.0%
ACGAGTAATCAGTGTGAATT+CGG + chr3.3:36336871-36336890 None:intergenic 35.0%
ACTCCTAAGAACTCTACATT+AGG + chr3.3:36339037-36339056 None:intergenic 35.0%
AGAGGATATCATTTGAACCA+AGG - chr3.3:36338924-36338943 MS.gene019144:CDS 35.0%
AGATCTCGATTAGAAGATAG+AGG + chr3.3:36336144-36336163 None:intergenic 35.0%
ATATGGTTCCATAGAACTAG+TGG + chr3.3:36339397-36339416 None:intergenic 35.0%
ATTGAGCTCAAATACCTGAA+AGG + chr3.3:36335975-36335994 None:intergenic 35.0%
CAAACACATGAATTTCTGTC+GGG + chr3.3:36336403-36336422 None:intergenic 35.0%
CACAGTAACACAATATACTG+AGG + chr3.3:36336469-36336488 None:intergenic 35.0%
CAGCTATGCACTTTATGATA+TGG - chr3.3:36337333-36337352 MS.gene019144:intron 35.0%
CATATCATAAAGTGCATAGC+TGG + chr3.3:36337335-36337354 None:intergenic 35.0%
CATGATTATCGGTCATAGAA+AGG + chr3.3:36338163-36338182 None:intergenic 35.0%
CATTCAGACAATCCCATTAA+CGG + chr3.3:36336112-36336131 None:intergenic 35.0%
CCGCTTAAAGAAAACAATCA+CGG + chr3.3:36337807-36337826 None:intergenic 35.0%
CTCATAGCATACACAGTAAA+GGG + chr3.3:36339521-36339540 None:intergenic 35.0%
GAAATCAGTATTATGGCTGT+AGG - chr3.3:36338416-36338435 MS.gene019144:CDS 35.0%
GATCTCGATTAGAAGATAGA+GGG + chr3.3:36336143-36336162 None:intergenic 35.0%
GCAAACACATGAATTTCTGT+CGG + chr3.3:36336404-36336423 None:intergenic 35.0%
GCCAGTAATAACCTTAATTC+TGG + chr3.3:36337762-36337781 None:intergenic 35.0%
GCTGTAATTAGGGTAAAACT+AGG + chr3.3:36338548-36338567 None:intergenic 35.0%
GTAAATTAAGGACAAGAAGG+TGG + chr3.3:36338031-36338050 None:intergenic 35.0%
GTACATACCTTTCCAAATCA+TGG + chr3.3:36337140-36337159 None:intergenic 35.0%
GTAGTTGCAGATACATCTTA+TGG - chr3.3:36339055-36339074 MS.gene019144:intron 35.0%
GTTATAAATACCCTAGCCAA+GGG - chr3.3:36338689-36338708 MS.gene019144:CDS 35.0%
TAAAAGTGACTGTGGAAAGT+GGG - chr3.3:36338843-36338862 MS.gene019144:intron 35.0%
TAAAGTGCATAGCTGGAATA+AGG + chr3.3:36337328-36337347 None:intergenic 35.0%
TAATGGAGTAAAAGTGACTG+TGG - chr3.3:36338835-36338854 MS.gene019144:intron 35.0%
TACATACGAGATATCTGAAG+TGG + chr3.3:36339887-36339906 None:intergenic 35.0%
TATTCGTCTGCATTTAACCA+AGG + chr3.3:36337671-36337690 None:intergenic 35.0%
TCAGTGGTATTTATGCAGAA+TGG - chr3.3:36337889-36337908 MS.gene019144:CDS 35.0%
TGCATGATTCCTAAAAAGGA+GGG + chr3.3:36336581-36336600 None:intergenic 35.0%
TGGTATTTATGCAGAATGGA+GGG - chr3.3:36337893-36337912 MS.gene019144:CDS 35.0%
TGTGCTATATGACCATGATT+TGG - chr3.3:36337125-36337144 MS.gene019144:CDS 35.0%
TGTTATAAATACCCTAGCCA+AGG - chr3.3:36338688-36338707 MS.gene019144:CDS 35.0%
TTGGTGTACTTAAAGCAAAG+AGG - chr3.3:36338906-36338925 MS.gene019144:intron 35.0%
TTTAGGCCTCACATTTCTTT+GGG - chr3.3:36339491-36339510 MS.gene019144:intron 35.0%
! AATACCACTGAAGTACCTTA+TGG + chr3.3:36337880-36337899 None:intergenic 35.0%
! AATATGCATTTTCAGAGTCC+AGG - chr3.3:36336773-36336792 MS.gene019144:CDS 35.0%
! ACATACGAGATATCTGAAGT+GGG + chr3.3:36339886-36339905 None:intergenic 35.0%
! ACTTTTGTTACCAATTCCTG+AGG + chr3.3:36337373-36337392 None:intergenic 35.0%
! ATACCACTGAAGTACCTTAT+GGG + chr3.3:36337879-36337898 None:intergenic 35.0%
! ATATGCATTTTCAGAGTCCA+GGG - chr3.3:36336774-36336793 MS.gene019144:CDS 35.0%
! ATTCACACTGATTACTCGTT+TGG - chr3.3:36336872-36336891 MS.gene019144:CDS 35.0%
! CAGGAATTGGTAACAAAAGT+TGG - chr3.3:36337373-36337392 MS.gene019144:intron 35.0%
! CCGTGATTGTTTTCTTTAAG+CGG - chr3.3:36337804-36337823 MS.gene019144:intron 35.0%
! GATGCTTGCTAGTTTAGATT+TGG - chr3.3:36336240-36336259 MS.gene019144:intron 35.0%
! TTGCTTTAAGTACACCAAGA+GGG + chr3.3:36338904-36338923 None:intergenic 35.0%
! TTGGCTAGGGTATTTATAAC+AGG + chr3.3:36338689-36338708 None:intergenic 35.0%
! TTTCAGTTTTTAATCGCGCT+AGG - chr3.3:36339263-36339282 MS.gene019144:intron 35.0%
! TTTGCTTTAAGTACACCAAG+AGG + chr3.3:36338905-36338924 None:intergenic 35.0%
!! TTTTCCTGTTTAAGGTTGCA+TGG - chr3.3:36337024-36337043 MS.gene019144:intron 35.0%
AAACATAGAGAGACCAGGTT+AGG - chr3.3:36338227-36338246 MS.gene019144:intron 40.0%
AAACCAGAAATGGAGTGCAA+AGG + chr3.3:36337522-36337541 None:intergenic 40.0%
AACATAGAGAGACCAGGTTA+GGG - chr3.3:36338228-36338247 MS.gene019144:intron 40.0%
AACTCCATGCAACCTTAAAC+AGG + chr3.3:36337031-36337050 None:intergenic 40.0%
AAGGCATGTAAACAAGGACA+GGG + chr3.3:36339120-36339139 None:intergenic 40.0%
AATATCAAGACCCTTGGCTA+GGG + chr3.3:36338702-36338721 None:intergenic 40.0%
AATCCACTTGCTTCTGTGAT+TGG - chr3.3:36337060-36337079 MS.gene019144:intron 40.0%
AATTGAAAGACCACGCTGTA+TGG + chr3.3:36337724-36337743 None:intergenic 40.0%
ACCAGGTTAGGGGATAAAAA+TGG - chr3.3:36338239-36338258 MS.gene019144:intron 40.0%
ACTATATCTACCTGTGTCCT+AGG + chr3.3:36338727-36338746 None:intergenic 40.0%
ACTTCAAGATGCTTCCTTTC+AGG - chr3.3:36335958-36335977 MS.gene019144:CDS 40.0%
AGATTCAGTACCTTGTGTCT+CGG - chr3.3:36339597-36339616 MS.gene019144:intron 40.0%
AGGTTGTTCTCTTAGAGTCT+AGG - chr3.3:36336831-36336850 MS.gene019144:CDS 40.0%
ATCAAACAAATCTAGCTGGG+AGG - chr3.3:36338336-36338355 MS.gene019144:intron 40.0%
ATCCACTTGCTTCTGTGATT+GGG - chr3.3:36337061-36337080 MS.gene019144:intron 40.0%
ATGATTCCTAAAAAGGAGGG+AGG + chr3.3:36336578-36336597 None:intergenic 40.0%
CAAAGAAATGTGAGGCCTAA+AGG + chr3.3:36339492-36339511 None:intergenic 40.0%
CCTCATAGCATACACAGTAA+AGG + chr3.3:36339522-36339541 None:intergenic 40.0%
CCTTTACTGTGTATGCTATG+AGG - chr3.3:36339519-36339538 MS.gene019144:intron 40.0%
CTACTTCCTTAATCTCCACA+AGG - chr3.3:36339084-36339103 MS.gene019144:intron 40.0%
CTCAGTTCACTAATCTACAC+AGG - chr3.3:36339371-36339390 MS.gene019144:intron 40.0%
CTCTCTTTCGTGTTACATAC+AGG - chr3.3:36338066-36338085 MS.gene019144:intron 40.0%
CTTTAGGCCTCACATTTCTT+TGG - chr3.3:36339490-36339509 MS.gene019144:intron 40.0%
GAATCAAGTTCCTCAGGAAT+TGG - chr3.3:36337360-36337379 MS.gene019144:intron 40.0%
GCTGTGCATGATTCCTAAAA+AGG + chr3.3:36336585-36336604 None:intergenic 40.0%
GGCTCGGATATAAATTCACT+GGG - chr3.3:36339623-36339642 MS.gene019144:intron 40.0%
GGTTGTTCTCTTAGAGTCTA+GGG - chr3.3:36336832-36336851 MS.gene019144:CDS 40.0%
GTAAAAGTGACTGTGGAAAG+TGG - chr3.3:36338842-36338861 MS.gene019144:intron 40.0%
GTAGATTAGTGAACTGAGCA+GGG + chr3.3:36339369-36339388 None:intergenic 40.0%
GTGCATGATTCCTAAAAAGG+AGG + chr3.3:36336582-36336601 None:intergenic 40.0%
GTGGTATTTATGCAGAATGG+AGG - chr3.3:36337892-36337911 MS.gene019144:CDS 40.0%
TAGATAACCTGTTCTTCGCA+GGG - chr3.3:36339708-36339727 MS.gene019144:intron 40.0%
TCAAACAAATCTAGCTGGGA+GGG - chr3.3:36338337-36338356 MS.gene019144:intron 40.0%
TCAGGGTCACAAAAGTTGTT+CGG - chr3.3:36338807-36338826 MS.gene019144:intron 40.0%
TCATGGAAGGTCTATGCAAA+TGG + chr3.3:36338469-36338488 None:intergenic 40.0%
TGAAAACCTCACCTACCTTT+AGG - chr3.3:36339474-36339493 MS.gene019144:intron 40.0%
TGGCCTAATGTAGAGTTCTT+AGG - chr3.3:36339031-36339050 MS.gene019144:intron 40.0%
TGTAGATTAGTGAACTGAGC+AGG + chr3.3:36339370-36339389 None:intergenic 40.0%
TTACTGTGGAAATGCATAGC+AGG + chr3.3:36337571-36337590 None:intergenic 40.0%
TTAGAGTCTAGGGAAAGACT+TGG - chr3.3:36336842-36336861 MS.gene019144:CDS 40.0%
! AAGGCATCACTATAAGGTAG+AGG + chr3.3:36337503-36337522 None:intergenic 40.0%
! ACTTTTGTGACCCTGAAAAG+AGG + chr3.3:36338803-36338822 None:intergenic 40.0%
! GCACACTCTTTTCCTGTTTA+AGG - chr3.3:36337016-36337035 MS.gene019144:intron 40.0%
! TATCTGAAGTGGGATAGTCA+AGG + chr3.3:36339876-36339895 None:intergenic 40.0%
! TCCTTGTTTACATGCCTTCT+GGG - chr3.3:36339122-36339141 MS.gene019144:intron 40.0%
!! AGTGCAAAGGCATCACTATA+AGG + chr3.3:36337509-36337528 None:intergenic 40.0%
!! TCCATTTTTATCCCCTAACC+TGG + chr3.3:36338243-36338262 None:intergenic 40.0%
AAATAGAGTGGTTACCGGTG+AGG + chr3.3:36339236-36339255 None:intergenic 45.0%
AACCACATGAACTGTACGAG+AGG - chr3.3:36339672-36339691 MS.gene019144:intron 45.0%
AAGGGTCTTGATATTCGCCT+AGG - chr3.3:36338707-36338726 MS.gene019144:CDS 45.0%
AAGGTTGCATGGAGTTTGCA+AGG - chr3.3:36337035-36337054 MS.gene019144:intron 45.0%
ACATAGAGAGACCAGGTTAG+GGG - chr3.3:36338229-36338248 MS.gene019144:intron 45.0%
AGATAACCTGTTCTTCGCAG+GGG - chr3.3:36339709-36339728 MS.gene019144:intron 45.0%
ATCCCCACTAGTACGGTAAA+GGG + chr3.3:36337100-36337119 None:intergenic 45.0%
ATGCCTTTGCACTCCATTTC+TGG - chr3.3:36337516-36337535 MS.gene019144:intron 45.0%
ATGTTGAAGACTCATGCACC+TGG + chr3.3:36338136-36338155 None:intergenic 45.0%
ATTTATGCAGAATGGAGGGC+TGG - chr3.3:36337897-36337916 MS.gene019144:CDS 45.0%
CAAACAAATCTAGCTGGGAG+GGG - chr3.3:36338338-36338357 MS.gene019144:intron 45.0%
CAGAGTTATCCCCACTAGTA+CGG + chr3.3:36337107-36337126 None:intergenic 45.0%
CGTTGAAACATAGAGAGACC+AGG - chr3.3:36338222-36338241 MS.gene019144:intron 45.0%
GAAATGTGAGGCCTAAAGGT+AGG + chr3.3:36339488-36339507 None:intergenic 45.0%
GAATATCAAGACCCTTGGCT+AGG + chr3.3:36338703-36338722 None:intergenic 45.0%
GCAACAAGTATGAGCTATCC+AGG - chr3.3:36339734-36339753 MS.gene019144:intron 45.0%
GCGAAGAACAGGTTATCTAC+TGG + chr3.3:36339707-36339726 None:intergenic 45.0%
GGGCTCGGATATAAATTCAC+TGG - chr3.3:36339622-36339641 MS.gene019144:intron 45.0%
GTAGATAACCTGTTCTTCGC+AGG - chr3.3:36339707-36339726 MS.gene019144:intron 45.0%
TACCCCTTTACCGTACTAGT+GGG - chr3.3:36337094-36337113 MS.gene019144:intron 45.0%
TAGGCGAATATCAAGACCCT+TGG + chr3.3:36338708-36338727 None:intergenic 45.0%
TATCCCCACTAGTACGGTAA+AGG + chr3.3:36337101-36337120 None:intergenic 45.0%
TCATGTGTTTGCCCCAATGT+TGG - chr3.3:36336412-36336431 MS.gene019144:intron 45.0%
TGTAAAGTCGTCTCATAGCC+AGG - chr3.3:36338115-36338134 MS.gene019144:CDS 45.0%
TTACCCCTTTACCGTACTAG+TGG - chr3.3:36337093-36337112 MS.gene019144:intron 45.0%
TTGATATTCGCCTAGGACAC+AGG - chr3.3:36338714-36338733 MS.gene019144:CDS 45.0%
TTGTTTACATGCCTTCTGGG+CGG - chr3.3:36339125-36339144 MS.gene019144:intron 45.0%
! ACAAAGCGCTATTTAGTCCC+TGG + chr3.3:36336794-36336813 None:intergenic 45.0%
! GAAGGCATGTAAACAAGGAC+AGG + chr3.3:36339121-36339140 None:intergenic 45.0%
! GATTTGTTTCAGCCGGTGAT+GGG - chr3.3:36339839-36339858 MS.gene019144:intron 45.0%
! GTCCTTGTTTACATGCCTTC+TGG - chr3.3:36339121-36339140 MS.gene019144:intron 45.0%
! TTGCCCATAAGGTACTTCAG+TGG - chr3.3:36337873-36337892 MS.gene019144:intron 45.0%
!! CACAAGGTACTGAATCTGCA+TGG + chr3.3:36339594-36339613 None:intergenic 45.0%
!! TACACAGGCCACTAGTTCTA+TGG - chr3.3:36339386-36339405 MS.gene019144:intron 45.0%
!! TTTGGCTTTCCTGTTGACCT+GGG - chr3.3:36336890-36336909 MS.gene019144:CDS 45.0%
!! TAATTTAATAAGAAAATAAA+AGG + chr3.3:36336992-36337011 None:intergenic 5.0%
!!! TATTTTCTTATTAAATTAAA+AGG - chr3.3:36336994-36337013 MS.gene019144:CDS 5.0%
AACTGAGCAGGGTGAACTAG+AGG + chr3.3:36339358-36339377 None:intergenic 50.0%
AAGCTGCCATCGCTGAACTT+GGG - chr3.3:36338963-36338982 MS.gene019144:CDS 50.0%
AATGCACCATGGACAGATCC+TGG + chr3.3:36339755-36339774 None:intergenic 50.0%
ACCCCTTTACCGTACTAGTG+GGG - chr3.3:36337095-36337114 MS.gene019144:intron 50.0%
AGCCTCTCGTACAGTTCATG+TGG + chr3.3:36339677-36339696 None:intergenic 50.0%
AGCTATCCAGGATCTGTCCA+TGG - chr3.3:36339746-36339765 MS.gene019144:intron 50.0%
AGCTTTACCATGATGCTCCC+AGG + chr3.3:36336910-36336929 None:intergenic 50.0%
ATCTTCAGCCGCCATCATTC+CGG + chr3.3:36339783-36339802 None:intergenic 50.0%
ATTCTCCACCGGAATGATGG+CGG - chr3.3:36339772-36339791 MS.gene019144:intron 50.0%
CACTTGCTTCTGTGATTGGG+AGG - chr3.3:36337064-36337083 MS.gene019144:intron 50.0%
CCTAAAAAGGAGGGAGGTAG+AGG + chr3.3:36336572-36336591 None:intergenic 50.0%
CCTTCCTAATGCTTCCTCAC+CGG - chr3.3:36339219-36339238 MS.gene019144:intron 50.0%
CTCCCAATCACAGAAGCAAG+TGG + chr3.3:36337066-36337085 None:intergenic 50.0%
CTGAAGTGGGATAGTCAAGG+AGG + chr3.3:36339873-36339892 None:intergenic 50.0%
GAGTCTAGGGAAAGACTTGG+TGG - chr3.3:36336845-36336864 MS.gene019144:CDS 50.0%
GCTATTGTTGCTGTCCCTCT+TGG - chr3.3:36338887-36338906 MS.gene019144:intron 50.0%
GGATGGGAATCAAGTTCCTC+AGG - chr3.3:36337354-36337373 MS.gene019144:intron 50.0%
GGTCAGCCCAAAGAAATGTG+AGG + chr3.3:36339500-36339519 None:intergenic 50.0%
TCAGTACCTTGTGTCTCGGT+GGG - chr3.3:36339601-36339620 MS.gene019144:intron 50.0%
TCCCCACTAGTACGGTAAAG+GGG + chr3.3:36337099-36337118 None:intergenic 50.0%
TGATTTCCACCCTTGACTGC+AGG - chr3.3:36337840-36337859 MS.gene019144:intron 50.0%
TGCATTCTCCACCGGAATGA+TGG - chr3.3:36339769-36339788 MS.gene019144:intron 50.0%
TTCACTGAATGGTTGGGACC+AGG - chr3.3:36337943-36337962 MS.gene019144:CDS 50.0%
TTCAGTACCTTGTGTCTCGG+TGG - chr3.3:36339600-36339619 MS.gene019144:intron 50.0%
! CCTCTACCTCCCTCCTTTTT+AGG - chr3.3:36336569-36336588 MS.gene019144:intron 50.0%
! CGAGCTGGATTTGTTTCAGC+CGG - chr3.3:36339832-36339851 MS.gene019144:intron 50.0%
! GCCCAGAAGGCATGTAAACA+AGG + chr3.3:36339126-36339145 None:intergenic 50.0%
! GGATTTGTTTCAGCCGGTGA+TGG - chr3.3:36339838-36339857 MS.gene019144:intron 50.0%
! GTGCAGCCTTGTGGAGATTA+AGG + chr3.3:36339093-36339112 None:intergenic 50.0%
! TGGTCACGGTCTTATGGTCA+GGG - chr3.3:36338655-36338674 MS.gene019144:intron 50.0%
!! GTTACCGGTGAGGAAGCATT+AGG + chr3.3:36339226-36339245 None:intergenic 50.0%
!! GTTTGGCTTTCCTGTTGACC+TGG - chr3.3:36336889-36336908 MS.gene019144:CDS 50.0%
!! TGACAGGAAGTACTTCTCCC+TGG - chr3.3:36338632-36338651 MS.gene019144:intron 50.0%
AAGGACAAGAAGGTGGGGCA+GGG + chr3.3:36338024-36338043 None:intergenic 55.0%
ACCATAAGACCGTGACCACC+AGG + chr3.3:36338653-36338672 None:intergenic 55.0%
AGATTGCAGGATGCGTGTGC+TGG - chr3.3:36339799-36339818 MS.gene019144:intron 55.0%
AGCTGCCATCGCTGAACTTG+GGG - chr3.3:36338964-36338983 MS.gene019144:CDS 55.0%
ATGCGTGTGCTGGAGCGATA+TGG - chr3.3:36339809-36339828 MS.gene019144:intron 55.0%
ATGGCAGCTTCCTTCCAGTC+TGG + chr3.3:36338953-36338972 None:intergenic 55.0%
CAGGACATGTCCATACAGCG+TGG - chr3.3:36337711-36337730 MS.gene019144:intron 55.0%
CAGTACCTTGTGTCTCGGTG+GGG - chr3.3:36339602-36339621 MS.gene019144:intron 55.0%
CATGATGCTCCCAGGTCAAC+AGG + chr3.3:36336902-36336921 None:intergenic 55.0%
CCATAAGACCGTGACCACCA+GGG + chr3.3:36338652-36338671 None:intergenic 55.0%
CTTCTGTGATTGGGAGGCTG+GGG - chr3.3:36337070-36337089 MS.gene019144:intron 55.0%
GAAGCTGCCATCGCTGAACT+TGG - chr3.3:36338962-36338981 MS.gene019144:CDS 55.0%
GAGGCCATTTCTCCCATCAC+CGG + chr3.3:36339854-36339873 None:intergenic 55.0%
GCTTCTGTGATTGGGAGGCT+GGG - chr3.3:36337069-36337088 MS.gene019144:intron 55.0%
GTACTTCTCCCTGGTGGTCA+CGG - chr3.3:36338641-36338660 MS.gene019144:intron 55.0%
GTAGCCTGTGGTCCATGATG+AGG - chr3.3:36336655-36336674 MS.gene019144:CDS 55.0%
GTCCATGGTGCATTCTCCAC+CGG - chr3.3:36339761-36339780 MS.gene019144:intron 55.0%
GTGAGGCCTAAAGGTAGGTG+AGG + chr3.3:36339483-36339502 None:intergenic 55.0%
TAAGGACAAGAAGGTGGGGC+AGG + chr3.3:36338025-36338044 None:intergenic 55.0%
TCCAACCCCAAGTTCAGCGA+TGG + chr3.3:36338972-36338991 None:intergenic 55.0%
TCCACCTCATCATGGACCAC+AGG + chr3.3:36336662-36336681 None:intergenic 55.0%
TGCTTCTGTGATTGGGAGGC+TGG - chr3.3:36337068-36337087 MS.gene019144:intron 55.0%
TGGCAGCTTCCTTCCAGTCT+GGG + chr3.3:36338952-36338971 None:intergenic 55.0%
TTCCACCCTTGACTGCAGGT+TGG - chr3.3:36337844-36337863 MS.gene019144:intron 55.0%
TTCCGGTGGAGAATGCACCA+TGG + chr3.3:36339766-36339785 None:intergenic 55.0%
TTGAACCAAGGCTCCCAGAC+TGG - chr3.3:36338936-36338955 MS.gene019144:CDS 55.0%
TTGCTTCCCCTGCGAAGAAC+AGG + chr3.3:36339718-36339737 None:intergenic 55.0%
! ACCCTTGACTGCAGGTTGGA+GGG - chr3.3:36337848-36337867 MS.gene019144:intron 55.0%
! GGTCACGGTCTTATGGTCAG+GGG - chr3.3:36338656-36338675 MS.gene019144:intron 55.0%
! GTGGTCACGGTCTTATGGTC+AGG - chr3.3:36338654-36338673 MS.gene019144:intron 55.0%
!! CAGGAAGTACTTCTCCCTGG+TGG - chr3.3:36338635-36338654 MS.gene019144:intron 55.0%
!! CCGGTGAGGAAGCATTAGGA+AGG + chr3.3:36339222-36339241 None:intergenic 55.0%
!! CTGTTGACCTGGGAGCATCA+TGG - chr3.3:36336900-36336919 MS.gene019144:CDS 55.0%
!! TCAGCCGGTGATGGGAGAAA+TGG - chr3.3:36339847-36339866 MS.gene019144:intron 55.0%
!! TGATGGCGGCTGAAGATTGC+AGG - chr3.3:36339786-36339805 MS.gene019144:intron 55.0%
ACCAAGGCTCCCAGACTGGA+AGG - chr3.3:36338940-36338959 MS.gene019144:CDS 60.0%
AGGACAAGAAGGTGGGGCAG+GGG + chr3.3:36338023-36338042 None:intergenic 60.0%
CCCCTCCAACCTGCAGTCAA+GGG + chr3.3:36337852-36337871 None:intergenic 60.0%
CCCTGGTGGTCACGGTCTTA+TGG - chr3.3:36338649-36338668 MS.gene019144:intron 60.0%
CTCCAACCTGCAGTCAAGGG+TGG + chr3.3:36337849-36337868 None:intergenic 60.0%
GCCATCGCTGAACTTGGGGT+TGG - chr3.3:36338968-36338987 MS.gene019144:CDS 60.0%
GCCTGTGGTCCATGATGAGG+TGG - chr3.3:36336658-36336677 MS.gene019144:CDS 60.0%
GTTGGAGGGGCTTGCCCATA+AGG - chr3.3:36337862-36337881 MS.gene019144:intron 60.0%
TCCTTCCAGTCTGGGAGCCT+TGG + chr3.3:36338944-36338963 None:intergenic 60.0%
TCTTTGGCAAGCCGCCCAGA+AGG + chr3.3:36339139-36339158 None:intergenic 60.0%
TTCAGCCGCCATCATTCCGG+TGG + chr3.3:36339780-36339799 None:intergenic 60.0%
! CACCCTTGACTGCAGGTTGG+AGG - chr3.3:36337847-36337866 MS.gene019144:intron 60.0%
! CCCTTGACTGCAGGTTGGAG+GGG - chr3.3:36337849-36337868 MS.gene019144:intron 60.0%
CAGGGTGACGTGCAGCCTTG+TGG + chr3.3:36339102-36339121 None:intergenic 65.0%
CCTTGTGTCTCGGTGGGGCT+CGG - chr3.3:36339607-36339626 MS.gene019144:intron 65.0%
GACAAGAAGGTGGGGCAGGG+GGG + chr3.3:36338021-36338040 None:intergenic 65.0%
GCCCCTCCAACCTGCAGTCA+AGG + chr3.3:36337853-36337872 None:intergenic 65.0%
GCTGGAGCGATATGGCGAGC+TGG - chr3.3:36339817-36339836 MS.gene019144:intron 65.0%
GGACAAGAAGGTGGGGCAGG+GGG + chr3.3:36338022-36338041 None:intergenic 65.0%
CCGAGCCCCACCGAGACACA+AGG + chr3.3:36339610-36339629 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 36335932 36339907 36335932 ID=MS.gene019144
chr3.3 mRNA 36335932 36339907 36335932 ID=MS.gene019144.t1;Parent=MS.gene019144
chr3.3 exon 36339860 36339907 36339860 ID=MS.gene019144.t1.exon1;Parent=MS.gene019144.t1
chr3.3 CDS 36339860 36339907 36339860 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36338918 36339006 36338918 ID=MS.gene019144.t1.exon2;Parent=MS.gene019144.t1
chr3.3 CDS 36338918 36339006 36338918 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36338688 36338801 36338688 ID=MS.gene019144.t1.exon3;Parent=MS.gene019144.t1
chr3.3 CDS 36338688 36338801 36338688 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36338416 36338503 36338416 ID=MS.gene019144.t1.exon4;Parent=MS.gene019144.t1
chr3.3 CDS 36338416 36338503 36338416 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36338070 36338155 36338070 ID=MS.gene019144.t1.exon5;Parent=MS.gene019144.t1
chr3.3 CDS 36338070 36338155 36338070 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36337875 36337977 36337875 ID=MS.gene019144.t1.exon6;Parent=MS.gene019144.t1
chr3.3 CDS 36337875 36337977 36337875 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36337104 36337201 36337104 ID=MS.gene019144.t1.exon7;Parent=MS.gene019144.t1
chr3.3 CDS 36337104 36337201 36337104 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36336599 36337028 36336599 ID=MS.gene019144.t1.exon8;Parent=MS.gene019144.t1
chr3.3 CDS 36336599 36337028 36336599 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
chr3.3 exon 36335932 36336240 36335932 ID=MS.gene019144.t1.exon9;Parent=MS.gene019144.t1
chr3.3 CDS 36335932 36336240 36335932 ID=cds.MS.gene019144.t1;Parent=MS.gene019144.t1
Gene Sequence

>MS.gene019144

ATGGCTGGGATTGCTGCTGCACGTGCACTTCAAGATGCTTCCTTTCAGGTATTTGAGCTCAATATTTTGATTTATGAGTTCAAACAACTGACAATCGTTGTTGATCTAGAAAGTTAGTATGTTACTGTTGTAAAACAATGATTTATTGCTTGTGGATGCTTACATGATTGCAATTATCCGTTAATGGGATTGTCTGAATGAATTTTTACCCTCTATCTTCTAATCGAGATCTTTCATGAAACAAATCTAATTATATTTGTAAAATGGTGGAAATCTGGTTTAGAGTTTACAAAGAATTTGATGTGGGTGATGCTTGCTAGTTTAGATTTGGGTTACGTTTCACTTTAGTCGAGTAAAACTATAGCTCTTAAAGGGATTCAAGAATGCATGCAATAATTGAATTTATGCTATATGTTACCCTTTTTTATTTTGTATTTTTCTGATTTTCCTTGTATTTATTTTTATGAACCCGACAGAAATTCATGTGTTTGCCCCAATGTTGGCAATGTAATATGTAACTAACAATAACATATACCTCAGTATATTGTGTTACTGTGATGCTTCTTGTTTGAAGCTTGAACTTTCACACTTAACAAATGAATAGAAGCTGTTTTTTTGTTTTGTTTTTCTGCTTTATCCTCTACCTCCCTCCTTTTTAGGAATCATGCACAGCATTGTGCTACTGAGTCGTTTCTTATTTAATAACTGGATATACATATTTTTGTAGCCTGTGGTCCATGATGAGGTGGAAATATAAATAAAAATAAATAAAATCAAGCAAAGCTTTGTGTTTCCTATTATTTGAAACTTGGAGCTGCATTTTTGTAACCTGCAATCAATTAATATGCATTTTCAGAGTCCAGGGACTAAATAGCGCTTTGTTTTTTAATTTTTTGGTCAGGTTGTTCTCTTAGAGTCTAGGGAAAGACTTGGTGGCCGAATTCACACTGATTACTCGTTTGGCTTTCCTGTTGACCTGGGAGCATCATGGTAAAGCTTATTCTCTTCATGTTCTGATGTATTTGAATGTTTGATGAGAATGTACATTTTTTTTTCTCCTTTTATTTTCTTATTAAATTAAAAGGCACACTCTTTTCCTGTTTAAGGTTGCATGGAGTTTGCAAGGAGAATCCACTTGCTTCTGTGATTGGGAGGCTGGGGTTACCCCTTTACCGTACTAGTGGGGATAACTCTGTGCTATATGACCATGATTTGGAAAGGTATGTACTTAAGTTATAATATTAGTTTGCAAATTCTGTCACACTTGCATAGTAGATAATCATTTTTATTGTTTTTTGCGACCAGCTAGAAATTTCAATTTTTTTTCCCTTTTCTAGTTTTATACAACGTAGAAGGTATTACATGTTAGTTCTTTTTGAATTGAAATTCATTACCTTATTCCAGCTATGCACTTTATGATATGGATGGGAATCAAGTTCCTCAGGAATTGGTAACAAAAGTTGGTGAAGTATTTGAAACTATTTTACTGGAGGTAAGTCATTTTCTTATTTAGTCTCCTAGTTATTTGGTTTATTACAAAAGATTGTTAGGTTTTGGGGTGCAAAATTCCTCTACCTTATAGTGATGCCTTTGCACTCCATTTCTGGTTTGATAGTAGAAAAGGTTATTTGGTTTACCTGCTATGCATTTCCACAGTAAAAATATTTTTTTCCAAATCATCTCTTCTAATGTTTGATTCTACTTATTGTCATTGTGAGAAACCTTTGAAATTTTGTCCTTGGTTAAATGCAGACGAATAAAGTAAGAAGTGAATTCAATCAGGACATGTCCATACAGCGTGGTCTTTCAATTGTTTTTGAAAGGAAACCAGAATTAAGGTTATTACTGGCATATAATTAAAATTCACTGAGACCGTGATTGTTTTCTTTAAGCGGTAGTAAAGTAATATGATTTCCACCCTTGACTGCAGGTTGGAGGGGCTTGCCCATAAGGTACTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCTGATTCTGATACAATTTCACTGAATGGTTGGGACCAGGTAATTTAAAGAAATCAACTTGAAGATGTTACTCTTGTATTAGCTGTTAAGTTCCCCCCTGCCCCACCTTCTTGTCCTTAATTTACACACTAAATGATTTACTCTCTTTCGTGTTACATACAGGTAGCTCCTGTAGTGAAAGATATAATTTGTAAAGTCGTCTCATAGCCAGGTGCATGAGTCTTCAACATGCAGCCTTTCTATGACCGATAATCATGTAAATGTGTTTACTGATCTATAAATAGGAGTATGCATCTCGTTGAAACATAGAGAGACCAGGTTAGGGGATAAAAATGGATCATTGTGTTGTTATGCATGTAAAACTCTCGAGAAACGAGTAAGTCAAACATGTGTAAATTTCATCATGTAGAATCAAACAAATCTAGCTGGGAGGGGTGTAAAAGATTCCTTTCATGACAGGTCATTTTATTGCATGATTGTGAAATGCTGTGAAATCAGTATTATGGCTGTAGGGTTTTCAGTTTAATGAAAACATTTCTTCCATTTGCATAGACCTTCCATGAAGAACATTAGAAAATACTGCATATTAAAACTAAGTTGACCTTTAAAACTAAGTTGACCTAGTTTTACCCTAATTACAGCATATTGCAAACATTTTTCTTTTGAGCATATCTTGTTTTCAGATCTTATACCTCTGAATATATTTTGACAGGAAGTACTTCTCCCTGGTGGTCACGGTCTTATGGTCAGGGGCTACTTGCCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTAGGACACAGGTAGATATAGTTTGAATTGTTGTTTTGATATTGTATGTCCTGTTATGTTGCTTAATTAATCTAACCTCTTTTCAGGGTCACAAAAGTTGTTCGGAGATATAATGGAGTAAAAGTGACTGTGGAAAGTGGGAAAACATTTATTGCTGATGCGGCTATTGTTGCTGTCCCTCTTGGTGTACTTAAAGCAAAGAGGATATCATTTGAACCAAGGCTCCCAGACTGGAAGGAAGCTGCCATCGCTGAACTTGGGGTTGGACTTGAGAACAAAATTATTCTACATTTTGAGAATGTATTTTGGCCTAATGTAGAGTTCTTAGGAGTAGTTGCAGATACATCTTATGGATGTAGCTACTTCCTTAATCTCCACAAGGCTGCACGTCACCCTGTCCTTGTTTACATGCCTTCTGGGCGGCTTGCCAAAGACATTGAAAAAATGTCTGATGAAGCAGCTGCTGACTTTGCTTTTGTACAGCTCAAGAAGATCCTTCCTAATGCTTCCTCACCGGTAACCACTCTATTTTTACTTATTTCAGTTTTTAATCGCGCTAGGAAAATTACGTTTCAATACTCAATTCAGTTATCAGTCCAAACATAAGATTAGATAAGTCTTTATTATAGGCCTCTAGTTCACCCTGCTCAGTTCACTAATCTACACAGGCCACTAGTTCTATGGAACCATATTCATATTGATACTACAAAAAGTGCACACATAAGTTCTGCTCTATTAATTGTTCACTATGAAAACCTCACCTACCTTTAGGCCTCACATTTCTTTGGGCTGACCCTTTACTGTGTATGCTATGAGGCTTTAATTTAGTTAATTTGTGGCCTATGTATTTTAATTATTTGTCTTTACCATGCAGATTCAGTACCTTGTGTCTCGGTGGGGCTCGGATATAAATTCACTGGGATCATATAGCTATGATCAAGTAGGGAAACCACATGAACTGTACGAGAGGCTACGAGTTCCAGTAGATAACCTGTTCTTCGCAGGGGAAGCAACAAGTATGAGCTATCCAGGATCTGTCCATGGTGCATTCTCCACCGGAATGATGGCGGCTGAAGATTGCAGGATGCGTGTGCTGGAGCGATATGGCGAGCTGGATTTGTTTCAGCCGGTGATGGGAGAAATGGCCTCCTTGACTATCCCACTTCAGATATCTCGTATGTAA

Protein sequence

>MS.gene019144.t1

MAGIAAARALQDASFQVVLLESRERLGGRIHTDYSFGFPVDLGASWLHGVCKENPLASVIGRLGLPLYRTSGDNSVLYDHDLESYALYDMDGNQVPQELVTKVGEVFETILLETNKVRSEFNQDMSIQRGLSIVFERKPELRLEGLAHKVLQWYLCRMEGWFAADSDTISLNGWDQEVLLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKVVRRYNGVKVTVESGKTFIADAAIVAVPLGVLKAKRISFEPRLPDWKEAAIAELGVGLENKIILHFENVFWPNVEFLGVVADTSYGCSYFLNLHKAARHPVLVYMPSGRLAKDIEKMSDEAAADFAFVQLKKILPNASSPIQYLVSRWGSDINSLGSYSYDQVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAFSTGMMAAEDCRMRVLERYGELDLFQPVMGEMASLTIPLQISRM