AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90281

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90281.t1 MTR_3g080990 95.911 269 5 1 1 269 1 263 0.0 520
MS.gene90281.t1 MTR_8g099730 68.595 242 75 1 2 243 12 252 1.21e-124 355
MS.gene90281.t1 MTR_8g099730 68.254 189 59 1 55 243 1 188 4.50e-93 273
MS.gene90281.t1 MTR_6g007633 54.505 222 100 1 8 228 8 229 5.67e-82 246
MS.gene90281.t1 MTR_6g007637 54.460 213 96 1 3 214 4 216 2.28e-78 237
MS.gene90281.t1 MTR_6g007623 51.131 221 107 1 8 227 5 225 1.59e-72 222
MS.gene90281.t1 MTR_4g106990 48.469 196 101 0 28 223 35 230 3.74e-64 201
MS.gene90281.t1 MTR_1g029380 44.398 241 120 4 5 233 2 240 1.67e-58 187
MS.gene90281.t1 MTR_3g089125 41.532 248 140 2 5 252 2 244 2.49e-56 181
MS.gene90281.t1 MTR_8g042490 42.009 219 126 1 2 220 8 225 3.40e-56 180
MS.gene90281.t1 MTR_6g007610 43.777 233 113 4 1 220 1 228 3.47e-53 173
MS.gene90281.t1 MTR_2g436310 40.164 244 137 3 11 253 8 243 1.95e-49 163
MS.gene90281.t1 MTR_2g073190 40.000 225 133 2 1 225 7 229 2.14e-49 173
MS.gene90281.t1 MTR_8g096320 41.395 215 125 1 3 217 4 217 3.15e-47 158
MS.gene90281.t1 MTR_5g067530 41.860 215 115 4 10 220 12 220 4.72e-47 158
MS.gene90281.t1 MTR_1g028460 39.720 214 127 1 4 215 2 215 2.11e-45 153
MS.gene90281.t1 MTR_3g090950 35.470 234 147 3 8 238 6 238 1.15e-44 151
MS.gene90281.t1 MTR_3g090940 34.177 237 154 1 4 238 2 238 1.49e-44 151
MS.gene90281.t1 MTR_3g098910 34.510 255 154 6 12 262 13 258 6.60e-44 151
MS.gene90281.t1 MTR_8g096310 35.124 242 142 5 10 243 11 245 7.78e-44 150
MS.gene90281.t1 MTR_2g007890 34.363 259 159 5 12 269 16 264 3.16e-42 146
MS.gene90281.t1 MTR_5g092600 35.593 236 132 3 23 258 24 239 9.44e-42 144
MS.gene90281.t1 MTR_7g007490 35.918 245 146 3 10 246 12 253 4.62e-41 142
MS.gene90281.t1 MTR_3g098930 40.513 195 106 3 4 194 6 194 6.05e-37 130
MS.gene90281.t1 MTR_7g405710 36.585 246 143 6 12 253 13 249 1.23e-32 121
MS.gene90281.t1 MTR_7g405730 39.706 204 117 3 12 213 13 212 1.26e-32 120
MS.gene90281.t1 MTR_8g096320 39.877 163 97 1 55 217 1 162 4.36e-31 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90281.t1 AT4G10850 57.430 249 101 4 8 252 10 257 2.87e-97 286
MS.gene90281.t1 AT1G66770 53.226 248 106 3 8 252 10 250 2.52e-89 266
MS.gene90281.t1 AT5G62850 48.523 237 117 1 1 232 1 237 2.55e-84 252
MS.gene90281.t1 AT3G28007 48.077 260 126 2 1 260 1 251 3.14e-73 224
MS.gene90281.t1 AT5G62850 50.515 194 96 0 1 194 1 194 1.88e-71 219
MS.gene90281.t1 AT5G40260 47.368 228 115 4 1 224 1 227 3.06e-61 193
MS.gene90281.t1 AT1G21460 46.352 233 121 4 6 236 3 233 3.26e-60 191
MS.gene90281.t1 AT4G15920 42.731 227 123 3 11 236 8 228 5.75e-52 170
MS.gene90281.t1 AT5G40260 46.535 202 103 4 1 198 1 201 1.36e-50 165
MS.gene90281.t1 AT5G50800 41.441 222 123 4 10 227 11 229 1.62e-50 168
MS.gene90281.t1 AT1G21460 47.644 191 97 3 5 194 2 190 1.36e-49 162
MS.gene90281.t1 AT3G16690 41.935 217 122 3 11 226 8 221 1.45e-49 163
MS.gene90281.t1 AT4G25010 37.121 264 155 6 3 258 4 264 1.65e-49 165
MS.gene90281.t1 AT3G16690 41.935 217 122 3 11 226 43 256 2.36e-49 164
MS.gene90281.t1 AT5G13170 35.821 268 156 6 10 265 13 276 4.83e-47 159
MS.gene90281.t1 AT5G53190 34.884 258 161 2 8 258 6 263 1.73e-46 156
MS.gene90281.t1 AT3G14770 36.986 219 137 1 2 220 8 225 3.86e-46 155
MS.gene90281.t1 AT5G23660 35.606 264 158 4 10 263 13 274 2.62e-45 154
MS.gene90281.t1 AT2G39060 37.168 226 139 2 12 237 13 235 3.02e-45 153
MS.gene90281.t1 AT5G50790 40.758 211 115 5 9 215 10 214 4.10e-43 148
MS.gene90281.t1 AT3G48740 35.802 243 150 3 10 251 13 250 1.18e-40 142
MS.gene90281.t1 AT3G16690 42.958 142 78 2 11 151 8 147 3.23e-26 102

Find 67 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCACCTTTGTCTATTA+TGG 0.190303 7.4:-42078944 MS.gene90281:intron
CATTTGGAAATGGTGTTTCT+TGG 0.224117 7.4:-42078756 MS.gene90281:CDS
ATATGCATGCTCTTTAATAT+TGG 0.289240 7.4:-42078973 MS.gene90281:CDS
TTGTTATTGTTGTTGTTGTT+GGG 0.304164 7.4:+42078431 None:intergenic
TTCCTATCTTTAGCTTCATT+TGG 0.307672 7.4:-42078772 MS.gene90281:CDS
CTTGTTATTGTTGTTGTTGT+TGG 0.312232 7.4:+42078430 None:intergenic
TCCTTGCTGATATCTGCTCT+TGG 0.333735 7.4:+42078528 None:intergenic
AAAAGGGATGAGCGCATAAA+TGG 0.341443 7.4:+42078732 None:intergenic
TGTTGTTGTTGGGGTGGTCT+TGG 0.354967 7.4:+42078441 None:intergenic
AGTCTTCCTTGGTTTACTCT+TGG 0.378667 7.4:-42079079 MS.gene90281:CDS
CCTTGCTGATATCTGCTCTT+GGG 0.385802 7.4:+42078529 None:intergenic
TCTTTAGCTTCATTTGGAAA+TGG 0.387119 7.4:-42078766 MS.gene90281:CDS
AACAGCAGAACGTTTGTTAA+CGG 0.401198 7.4:+42079005 None:intergenic
AACATTGTCCCAATCCCATT+TGG 0.407143 7.4:+42078596 None:intergenic
TATGTAGGCCAACATTTGTT+GGG 0.412297 7.4:-42079308 MS.gene90281:intron
TGTTTCCTTACCGCAATGAA+TGG 0.413782 7.4:+42078706 None:intergenic
CGTTGATGAACTGCATGGTT+TGG 0.424939 7.4:-42079233 MS.gene90281:CDS
ATATCAGCAAGGAAGAATAA+TGG 0.426805 7.4:-42078518 MS.gene90281:CDS
TATCTCAATCAGATACCAAA+TGG 0.427186 7.4:-42078611 MS.gene90281:intron
AACAAACGTTCTGCTGTTGT+TGG 0.429590 7.4:-42079000 MS.gene90281:CDS
AAGAGGCTCAAAGTCTTCCT+TGG 0.429746 7.4:-42079090 MS.gene90281:CDS
CACACATCCTGCACCATTGA+TGG 0.437454 7.4:+42079161 None:intergenic
CGAACAGTAGTGGGTATCAT+AGG 0.440064 7.4:-42079688 MS.gene90281:intron
TGCATGGTTTGGACTCTCTA+CGG 0.441220 7.4:-42079222 MS.gene90281:CDS
ACAAACGTTCTGCTGTTGTT+GGG 0.444778 7.4:-42078999 MS.gene90281:CDS
TTCCTTGTGGTGACCATCAA+TGG 0.447143 7.4:-42079174 MS.gene90281:CDS
ACCGCAATGAATGGGTCAAA+AGG 0.452161 7.4:+42078715 None:intergenic
AATCAGATACCAAATGGGAT+TGG 0.454981 7.4:-42078605 MS.gene90281:intron
TTATGTAGGCCAACATTTGT+TGG 0.457311 7.4:-42079309 MS.gene90281:intron
ATCAGATACCAAATGGGATT+GGG 0.459053 7.4:-42078604 MS.gene90281:intron
GAGTGCCATTAATAGTCATT+TGG 0.462767 7.4:+42078376 None:intergenic
AATATTAAAGAGCATGCATA+TGG 0.469160 7.4:+42078975 None:intergenic
TTCCAAATGAAGCTAAAGAT+AGG 0.471206 7.4:+42078770 None:intergenic
GCAAGGAAGAATAATGGAAA+AGG 0.492645 7.4:-42078512 MS.gene90281:CDS
AGAAATTGCTCGAACAGTAG+TGG 0.495158 7.4:-42079698 MS.gene90281:CDS
ATTAATAGTCATTTGGCACT+TGG 0.496540 7.4:+42078383 None:intergenic
GTTTCCTTACCGCAATGAAT+GGG 0.497693 7.4:+42078707 None:intergenic
TTTGTTGGGATATGCAAGAA+AGG 0.508020 7.4:-42079294 MS.gene90281:CDS
GCATGGTTTGGACTCTCTAC+GGG 0.509664 7.4:-42079221 MS.gene90281:CDS
TTGCATATCCCAACAAATGT+TGG 0.519677 7.4:+42079300 None:intergenic
AAACTGTGAGGGTGCACCAT+TGG 0.523843 7.4:+42079195 None:intergenic
CAACGTGGCTAGGTATGGTA+CGG 0.525635 7.4:+42079251 None:intergenic
TTCATCAACGTGGCTAGGTA+TGG 0.527477 7.4:+42079246 None:intergenic
CCGCAATGAATGGGTCAAAA+GGG 0.533348 7.4:+42078716 None:intergenic
ATCTCAATCAGATACCAAAT+GGG 0.541436 7.4:-42078610 MS.gene90281:intron
GACTCTCTACGGGTTACCAA+TGG 0.543382 7.4:-42079211 MS.gene90281:CDS
AATCTGTCAGAGGTGGTAGT+TGG 0.549517 7.4:-42078482 MS.gene90281:CDS
GTGGTGACCATCAATGGTGC+AGG 0.573604 7.4:-42079168 MS.gene90281:CDS
GAAATTGCTCGAACAGTAGT+GGG 0.576969 7.4:-42079697 MS.gene90281:CDS
TCAATGAAATAAATGAGAGA+AGG 0.580735 7.4:+42079040 None:intergenic
AACGTGGCTAGGTATGGTAC+GGG 0.585953 7.4:+42079252 None:intergenic
CACCATTGATGGTCACCACA+AGG 0.603803 7.4:+42079172 None:intergenic
TGCAGTTCATCAACGTGGCT+AGG 0.615839 7.4:+42079241 None:intergenic
TGGAGACAAGAACATGCAGC+CGG 0.621497 7.4:+42079434 None:intergenic
CATCAATGGTGCAGGATGTG+TGG 0.640468 7.4:-42079160 MS.gene90281:CDS
AGAGATGAATCTGTCAGAGG+TGG 0.642601 7.4:-42078489 MS.gene90281:CDS
AGGAGAGATGAATCTGTCAG+AGG 0.643641 7.4:-42078492 MS.gene90281:CDS
GCACCCTCACAGTTTCCTTG+TGG 0.646427 7.4:-42079187 MS.gene90281:CDS
GTACTAACCATAATAGACAA+AGG 0.649411 7.4:+42078937 None:intergenic
ACTTCAGGAAATGTCATCGC+CGG 0.652320 7.4:-42079453 MS.gene90281:intron
CCCAAGAGCAGATATCAGCA+AGG 0.670604 7.4:-42078529 MS.gene90281:CDS
AGCCACGTTGATGAACTGCA+TGG 0.673870 7.4:-42079238 MS.gene90281:CDS
TCACCACAAGGAAACTGTGA+GGG 0.692337 7.4:+42079184 None:intergenic
GTCACCACAAGGAAACTGTG+AGG 0.716066 7.4:+42079183 None:intergenic
TAAGCTCCAAGAGTAAACCA+AGG 0.717292 7.4:+42079073 None:intergenic
GATTGGGACAATGTTTGCAG+TGG 0.718991 7.4:-42078588 MS.gene90281:CDS
AACCATGCAGTTCATCAACG+TGG 0.729957 7.4:+42079236 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATAACCAAAAAAATA+AGG + chr7.4:42078540-42078559 None:intergenic 10.0%
!! ATTTCAAAAAAACAAAAATA+AGG + chr7.4:42078566-42078585 None:intergenic 10.0%
!! TAAGATAAAATTGGTTAAAA+TGG - chr7.4:42079215-42079234 MS.gene90281:CDS 15.0%
!! ATTAAAAACATATGTACTTC+AGG - chr7.4:42078466-42078485 MS.gene90281:CDS 20.0%
!! CAAAAAGTGATAAATCAATA+AGG + chr7.4:42078601-42078620 None:intergenic 20.0%
!! GTTAAAATTGTAAAATGCAA+GGG + chr7.4:42078717-42078736 None:intergenic 20.0%
!! TAGACTAATATTGTACTAAA+TGG - chr7.4:42079462-42079481 MS.gene90281:intron 20.0%
!! TCAAAAAAACAAAAATAAGG+TGG + chr7.4:42078563-42078582 None:intergenic 20.0%
!! TTATAACCAAAAAAATAAGG+TGG + chr7.4:42078537-42078556 None:intergenic 20.0%
!!! TAATTTCCACCTTATTTTTT+TGG - chr7.4:42078528-42078547 MS.gene90281:CDS 20.0%
!!! TTTCTTGTGTTTTACTTTTT+TGG - chr7.4:42078502-42078521 MS.gene90281:CDS 20.0%
! AAAGTGATAAATCAATAAGG+TGG + chr7.4:42078598-42078617 None:intergenic 25.0%
! ATATGCATGCTCTTTAATAT+TGG - chr7.4:42079127-42079146 MS.gene90281:CDS 25.0%
! ATCTAGAAATAATCTTACAC+TGG + chr7.4:42078689-42078708 None:intergenic 25.0%
! CATGTGATCTTAATAATCTA+TGG - chr7.4:42079257-42079276 MS.gene90281:CDS 25.0%
! CGTTAAAATTGTAAAATGCA+AGG + chr7.4:42078718-42078737 None:intergenic 25.0%
! CTTCATGTTCTTAATTATGT+AGG - chr7.4:42078777-42078796 MS.gene90281:CDS 25.0%
! TCAATGAAATAAATGAGAGA+AGG + chr7.4:42079063-42079082 None:intergenic 25.0%
! TTTAAGCAAAGAATTAAGCA+TGG + chr7.4:42079430-42079449 None:intergenic 25.0%
!! AATATTAAAGAGCATGCATA+TGG + chr7.4:42079128-42079147 None:intergenic 25.0%
!! TTGTTATTGTTGTTGTTGTT+GGG + chr7.4:42079672-42079691 None:intergenic 25.0%
!!! GTTAAAATGGATTGATGAAT+GGG - chr7.4:42079228-42079247 MS.gene90281:CDS 25.0%
ATATCAGCAAGGAAGAATAA+TGG - chr7.4:42079582-42079601 MS.gene90281:intron 30.0%
ATCTCAATCAGATACCAAAT+GGG - chr7.4:42079490-42079509 MS.gene90281:intron 30.0%
GAAGCTAAAGATAGGAAAAA+CGG + chr7.4:42079325-42079344 None:intergenic 30.0%
GTACTAACCATAATAGACAA+AGG + chr7.4:42079166-42079185 None:intergenic 30.0%
TATATTCTGACCGTAAAAAG+AGG - chr7.4:42078993-42079012 MS.gene90281:CDS 30.0%
TATCTCAATCAGATACCAAA+TGG - chr7.4:42079489-42079508 MS.gene90281:intron 30.0%
TTCCAAATGAAGCTAAAGAT+AGG + chr7.4:42079333-42079352 None:intergenic 30.0%
! TCTTTAGCTTCATTTGGAAA+TGG - chr7.4:42079334-42079353 MS.gene90281:intron 30.0%
! TGTTATTGTTGTTGTTGTTG+GGG + chr7.4:42079671-42079690 None:intergenic 30.0%
! TTCCTATCTTTAGCTTCATT+TGG - chr7.4:42079328-42079347 MS.gene90281:intron 30.0%
!! CTTGTTATTGTTGTTGTTGT+TGG + chr7.4:42079673-42079692 None:intergenic 30.0%
!! GGTTAAAATGGATTGATGAA+TGG - chr7.4:42079227-42079246 MS.gene90281:CDS 30.0%
AATCAGATACCAAATGGGAT+TGG - chr7.4:42079495-42079514 MS.gene90281:intron 35.0%
ATCAGATACCAAATGGGATT+GGG - chr7.4:42079496-42079515 MS.gene90281:intron 35.0%
CATTTGGAAATGGTGTTTCT+TGG - chr7.4:42079344-42079363 MS.gene90281:intron 35.0%
TATGTAGGCCAACATTTGTT+GGG - chr7.4:42078792-42078811 MS.gene90281:CDS 35.0%
TGCTTCACCTTTGTCTATTA+TGG - chr7.4:42079156-42079175 MS.gene90281:CDS 35.0%
TTATGTAGGCCAACATTTGT+TGG - chr7.4:42078791-42078810 MS.gene90281:CDS 35.0%
TTGCATATCCCAACAAATGT+TGG + chr7.4:42078803-42078822 None:intergenic 35.0%
TTTGTTGGGATATGCAAGAA+AGG - chr7.4:42078806-42078825 MS.gene90281:CDS 35.0%
! AACAGCAGAACGTTTGTTAA+CGG + chr7.4:42079098-42079117 None:intergenic 35.0%
! AGACTTTGAGCCTCTTTTTA+CGG + chr7.4:42079006-42079025 None:intergenic 35.0%
! GCAAGGAAGAATAATGGAAA+AGG - chr7.4:42079588-42079607 MS.gene90281:intron 35.0%
AAAAGGGATGAGCGCATAAA+TGG + chr7.4:42079371-42079390 None:intergenic 40.0%
AACAAACGTTCTGCTGTTGT+TGG - chr7.4:42079100-42079119 MS.gene90281:CDS 40.0%
AACATTGTCCCAATCCCATT+TGG + chr7.4:42079507-42079526 None:intergenic 40.0%
ACAAACGTTCTGCTGTTGTT+GGG - chr7.4:42079101-42079120 MS.gene90281:CDS 40.0%
AGAAATTGCTCGAACAGTAG+TGG - chr7.4:42078402-42078421 MS.gene90281:CDS 40.0%
AGTCTTCCTTGGTTTACTCT+TGG - chr7.4:42079021-42079040 MS.gene90281:CDS 40.0%
GAAATTGCTCGAACAGTAGT+GGG - chr7.4:42078403-42078422 MS.gene90281:CDS 40.0%
GTTTCCTTACCGCAATGAAT+GGG + chr7.4:42079396-42079415 None:intergenic 40.0%
TAAGCTCCAAGAGTAAACCA+AGG + chr7.4:42079030-42079049 None:intergenic 40.0%
TGTTTCCTTACCGCAATGAA+TGG + chr7.4:42079397-42079416 None:intergenic 40.0%
! TATTGTTGTTGTTGTTGGGG+TGG + chr7.4:42079668-42079687 None:intergenic 40.0%
AACCATGCAGTTCATCAACG+TGG + chr7.4:42078867-42078886 None:intergenic 45.0%
AAGAGGCTCAAAGTCTTCCT+TGG - chr7.4:42079010-42079029 MS.gene90281:CDS 45.0%
AATCTGTCAGAGGTGGTAGT+TGG - chr7.4:42079618-42079637 MS.gene90281:intron 45.0%
ACCGCAATGAATGGGTCAAA+AGG + chr7.4:42079388-42079407 None:intergenic 45.0%
ACTTCAGGAAATGTCATCGC+CGG - chr7.4:42078647-42078666 MS.gene90281:intron 45.0%
AGAGATGAATCTGTCAGAGG+TGG - chr7.4:42079611-42079630 MS.gene90281:intron 45.0%
AGGAGAGATGAATCTGTCAG+AGG - chr7.4:42079608-42079627 MS.gene90281:intron 45.0%
CCGCAATGAATGGGTCAAAA+GGG + chr7.4:42079387-42079406 None:intergenic 45.0%
CCTTGCTGATATCTGCTCTT+GGG + chr7.4:42079574-42079593 None:intergenic 45.0%
GATTGGGACAATGTTTGCAG+TGG - chr7.4:42079512-42079531 MS.gene90281:intron 45.0%
TCACCACAAGGAAACTGTGA+GGG + chr7.4:42078919-42078938 None:intergenic 45.0%
TCCTTGCTGATATCTGCTCT+TGG + chr7.4:42079575-42079594 None:intergenic 45.0%
TTCATCAACGTGGCTAGGTA+TGG + chr7.4:42078857-42078876 None:intergenic 45.0%
TTCCTTGTGGTGACCATCAA+TGG - chr7.4:42078926-42078945 MS.gene90281:intron 45.0%
TTGACCCATTCATTGCGGTA+AGG - chr7.4:42079389-42079408 MS.gene90281:intron 45.0%
! CCCTTTTGACCCATTCATTG+CGG - chr7.4:42079384-42079403 MS.gene90281:intron 45.0%
! CGTTGATGAACTGCATGGTT+TGG - chr7.4:42078867-42078886 MS.gene90281:intron 45.0%
! TGCATGGTTTGGACTCTCTA+CGG - chr7.4:42078878-42078897 MS.gene90281:intron 45.0%
!! ACAGTAGTGGGTATCATAGG+TGG - chr7.4:42078415-42078434 MS.gene90281:CDS 45.0%
!! CAGTAGTGGGTATCATAGGT+GGG - chr7.4:42078416-42078435 MS.gene90281:CDS 45.0%
!! CGAACAGTAGTGGGTATCAT+AGG - chr7.4:42078412-42078431 MS.gene90281:CDS 45.0%
!!! TTTTTTATTTAAGATAAAAT+TGG - chr7.4:42079206-42079225 MS.gene90281:CDS 5.0%
AACGTGGCTAGGTATGGTAC+GGG + chr7.4:42078851-42078870 None:intergenic 50.0%
CAACGTGGCTAGGTATGGTA+CGG + chr7.4:42078852-42078871 None:intergenic 50.0%
CACACATCCTGCACCATTGA+TGG + chr7.4:42078942-42078961 None:intergenic 50.0%
CATCAATGGTGCAGGATGTG+TGG - chr7.4:42078940-42078959 MS.gene90281:intron 50.0%
CCCAAGAGCAGATATCAGCA+AGG - chr7.4:42079571-42079590 MS.gene90281:intron 50.0%
GTCACCACAAGGAAACTGTG+AGG + chr7.4:42078920-42078939 None:intergenic 50.0%
TCTCTCTCTCTCTCGACTTC+AGG - chr7.4:42078632-42078651 MS.gene90281:intron 50.0%
TGCAGTTCATCAACGTGGCT+AGG + chr7.4:42078862-42078881 None:intergenic 50.0%
TGGAGACAAGAACATGCAGC+CGG + chr7.4:42078669-42078688 None:intergenic 50.0%
! AAACTGTGAGGGTGCACCAT+TGG + chr7.4:42078908-42078927 None:intergenic 50.0%
! AGCCACGTTGATGAACTGCA+TGG - chr7.4:42078862-42078881 MS.gene90281:intron 50.0%
! CACCATTGATGGTCACCACA+AGG + chr7.4:42078931-42078950 None:intergenic 50.0%
! GACTCTCTACGGGTTACCAA+TGG - chr7.4:42078889-42078908 MS.gene90281:intron 50.0%
! GCATGGTTTGGACTCTCTAC+GGG - chr7.4:42078879-42078898 MS.gene90281:intron 50.0%
! TGTTGTTGTTGGGGTGGTCT+TGG + chr7.4:42079662-42079681 None:intergenic 50.0%
GCACCCTCACAGTTTCCTTG+TGG - chr7.4:42078913-42078932 MS.gene90281:intron 55.0%
GTGGTGACCATCAATGGTGC+AGG - chr7.4:42078932-42078951 MS.gene90281:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 42078391 42079731 42078391 ID=MS.gene90281
chr7.4 mRNA 42078391 42079731 42078391 ID=MS.gene90281.t1;Parent=MS.gene90281
chr7.4 exon 42079689 42079731 42079689 ID=MS.gene90281.t1.exon1;Parent=MS.gene90281.t1
chr7.4 CDS 42079689 42079731 42079689 ID=cds.MS.gene90281.t1;Parent=MS.gene90281.t1
chr7.4 exon 42079432 42079468 42079432 ID=MS.gene90281.t1.exon2;Parent=MS.gene90281.t1
chr7.4 CDS 42079432 42079468 42079432 ID=cds.MS.gene90281.t1;Parent=MS.gene90281.t1
chr7.4 exon 42078945 42079323 42078945 ID=MS.gene90281.t1.exon3;Parent=MS.gene90281.t1
chr7.4 CDS 42078945 42079323 42078945 ID=cds.MS.gene90281.t1;Parent=MS.gene90281.t1
chr7.4 exon 42078717 42078836 42078717 ID=MS.gene90281.t1.exon4;Parent=MS.gene90281.t1
chr7.4 CDS 42078717 42078836 42078717 ID=cds.MS.gene90281.t1;Parent=MS.gene90281.t1
chr7.4 exon 42078391 42078621 42078391 ID=MS.gene90281.t1.exon5;Parent=MS.gene90281.t1
chr7.4 CDS 42078391 42078621 42078391 ID=cds.MS.gene90281.t1;Parent=MS.gene90281.t1
Gene Sequence

>MS.gene90281

ATGAGTACTGCAGAAATTGCTCGAACAGTAGTGGGTATCATAGGTGGGTCATACTAATTTGCTTTTTAAGCTTTCATTAAAAACATATGTACTTCAGGAATATTTTTTCTTTTTCTTGTGTTTTACTTTTTTGGTTATAATTTCCACCTTATTTTTTTGGTTATAATTTCCACCTTATTTTTGTTTTTTTGAAATAAATAATTTCCACCTTATTGATTTATCACTTTTTGCATTTTTTCTCTCTCTCTCTCTCTCGACTTCAGGAAATGTCATCGCCGGCTGCATGTTCTTGTCTCCAGTGTAAGATTATTTCTAGATCTCTTCCCTTGCATTTTACAATTTTAACGTAAAAATTAACAATACGAACATTTGTTGTTAATTTTTTTCTTCATGTTCTTAATTATGTAGGCCAACATTTGTTGGGATATGCAAGAAAGGATCAGTAGAACAATACTCACCCGTACCATACCTAGCCACGTTGATGAACTGCATGGTTTGGACTCTCTACGGGTTACCAATGGTGCACCCTCACAGTTTCCTTGTGGTGACCATCAATGGTGCAGGATGTGTGGTTGAGATCATTTATATCACACTCTTTCTCATATATTCTGACCGTAAAAAGAGGCTCAAAGTCTTCCTTGGTTTACTCTTGGAGCTTATTTTCATTTTCCTTCTCTCATTTATTTCATTGACTATGCTTCACACCGTTAACAAACGTTCTGCTGTTGTTGGGACCATATGCATGCTCTTTAATATTGGCATGTATGCTTCACCTTTGTCTATTATGGTTAGTACTTAATATATATCATGTTTAATTTTTTATTTAAGATAAAATTGGTTAAAATGGATTGATGAATGGGCTTAATCATGTGATCTTAATAATCTATGGTTGCAGAAACTAGTGATCAAGACTAAAAGCGTTGAGTTCATGCCGTTTTTCCTATCTTTAGCTTCATTTGGAAATGGTGTTTCTTGGACCATTTATGCGCTCATCCCTTTTGACCCATTCATTGCGGTAAGGAAACAAATTATAATACCATGCTTAATTCTTTGCTTAAAATTATTAAGTGTTAGACTAATATTGTACTAAATGGATTATATCTCAATCAGATACCAAATGGGATTGGGACAATGTTTGCAGTGGTACAATTGATTCTATATGCATCATATTACAAGTCAACCCAAGAGCAGATATCAGCAAGGAAGAATAATGGAAAAGGAGAGATGAATCTGTCAGAGGTGGTAGTTGGCATGAGTAACACTACTGTCCAAGACCACCCCAACAACAACAACAATAACAAGATAACTGCTATTGATCATTCTTCTCCAAGTGCCAAATGA
Protein sequence

>MS.gene90281.t1

MSTAEIARTVVGIIGNVIAGCMFLSPVPTFVGICKKGSVEQYSPVPYLATLMNCMVWTLYGLPMVHPHSFLVVTINGAGCVVEIIYITLFLIYSDRKKRLKVFLGLLLELIFIFLLSFISLTMLHTVNKRSAVVGTICMLFNIGMYASPLSIMKLVIKTKSVEFMPFFLSLASFGNGVSWTIYALIPFDPFIAIPNGIGTMFAVVQLILYASYYKSTQEQISARKNNGKGEMNLSEVVVGMSNTTVQDHPNNNNNNKITAIDHSSPSAK