Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048962.t1 | KEH21268.1 | 96.8 | 219 | 7 | 0 | 3 | 221 | 38 | 256 | 6.60E-110 | 406.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048962.t1 | A2X3S3 | 59.4 | 212 | 85 | 1 | 3 | 213 | 28 | 239 | 4.7e-64 | 245.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048962.t1 | A0A072TWK5 | 96.8 | 219 | 7 | 0 | 3 | 221 | 38 | 256 | 4.8e-110 | 406.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048962.t1 | MTR_8g099730 | 96.804 | 219 | 7 | 0 | 3 | 221 | 38 | 256 | 4.26e-156 | 432 |
| MS.gene048962.t1 | MTR_8g099730 | 96.354 | 192 | 7 | 0 | 30 | 221 | 1 | 192 | 4.00e-134 | 375 |
| MS.gene048962.t1 | MTR_3g080990 | 71.296 | 216 | 61 | 1 | 3 | 217 | 28 | 243 | 1.56e-107 | 310 |
| MS.gene048962.t1 | MTR_6g007633 | 50.746 | 201 | 98 | 1 | 3 | 202 | 28 | 228 | 8.83e-69 | 211 |
| MS.gene048962.t1 | MTR_4g106990 | 51.531 | 196 | 95 | 0 | 3 | 198 | 35 | 230 | 8.96e-68 | 208 |
| MS.gene048962.t1 | MTR_6g007637 | 50.532 | 188 | 92 | 1 | 3 | 189 | 29 | 216 | 2.49e-66 | 205 |
| MS.gene048962.t1 | MTR_6g007623 | 49.268 | 205 | 103 | 1 | 3 | 206 | 25 | 229 | 4.60e-66 | 204 |
| MS.gene048962.t1 | MTR_1g029380 | 43.243 | 185 | 104 | 1 | 4 | 188 | 26 | 209 | 6.60e-46 | 152 |
| MS.gene048962.t1 | MTR_3g089125 | 37.900 | 219 | 126 | 3 | 4 | 220 | 26 | 236 | 2.95e-45 | 151 |
| MS.gene048962.t1 | MTR_6g007610 | 41.206 | 199 | 101 | 3 | 3 | 189 | 28 | 222 | 1.24e-42 | 144 |
| MS.gene048962.t1 | MTR_2g436310 | 41.872 | 203 | 113 | 2 | 3 | 205 | 25 | 222 | 7.78e-40 | 137 |
| MS.gene048962.t1 | MTR_2g073190 | 37.915 | 211 | 127 | 3 | 3 | 213 | 34 | 240 | 1.21e-39 | 144 |
| MS.gene048962.t1 | MTR_8g042490 | 37.696 | 191 | 118 | 1 | 3 | 193 | 34 | 223 | 1.02e-38 | 134 |
| MS.gene048962.t1 | MTR_5g067530 | 38.119 | 202 | 123 | 1 | 3 | 204 | 30 | 229 | 1.79e-38 | 134 |
| MS.gene048962.t1 | MTR_1g028460 | 38.389 | 211 | 123 | 3 | 4 | 212 | 27 | 232 | 2.54e-38 | 133 |
| MS.gene048962.t1 | MTR_5g092600 | 33.796 | 216 | 137 | 3 | 3 | 218 | 29 | 238 | 4.61e-38 | 132 |
| MS.gene048962.t1 | MTR_3g090950 | 37.559 | 213 | 128 | 4 | 4 | 212 | 27 | 238 | 2.05e-36 | 128 |
| MS.gene048962.t1 | MTR_8g096320 | 37.255 | 204 | 125 | 3 | 3 | 205 | 29 | 230 | 3.46e-35 | 125 |
| MS.gene048962.t1 | MTR_7g007490 | 35.468 | 203 | 128 | 2 | 3 | 205 | 30 | 229 | 6.33e-35 | 124 |
| MS.gene048962.t1 | MTR_3g098910 | 33.953 | 215 | 136 | 3 | 3 | 213 | 29 | 241 | 1.23e-34 | 125 |
| MS.gene048962.t1 | MTR_3g090940 | 33.971 | 209 | 133 | 2 | 4 | 207 | 27 | 235 | 1.81e-34 | 123 |
| MS.gene048962.t1 | MTR_8g096310 | 32.857 | 210 | 138 | 2 | 5 | 213 | 31 | 238 | 7.64e-33 | 120 |
| MS.gene048962.t1 | MTR_2g007890 | 35.602 | 191 | 114 | 4 | 3 | 190 | 32 | 216 | 1.85e-31 | 116 |
| MS.gene048962.t1 | MTR_8g096320 | 36.158 | 177 | 110 | 3 | 30 | 205 | 1 | 175 | 1.01e-26 | 102 |
| MS.gene048962.t1 | MTR_3g098930 | 36.527 | 167 | 104 | 2 | 3 | 169 | 30 | 194 | 1.38e-26 | 102 |
| MS.gene048962.t1 | MTR_7g405710 | 33.333 | 201 | 130 | 3 | 4 | 203 | 30 | 227 | 1.18e-24 | 98.6 |
| MS.gene048962.t1 | MTR_7g405730 | 34.946 | 186 | 117 | 3 | 4 | 188 | 30 | 212 | 4.51e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048962.t1 | AT4G10850 | 54.338 | 219 | 99 | 1 | 3 | 220 | 30 | 248 | 2.74e-82 | 246 |
| MS.gene048962.t1 | AT5G62850 | 51.244 | 201 | 98 | 0 | 3 | 203 | 28 | 228 | 4.13e-75 | 227 |
| MS.gene048962.t1 | AT1G66770 | 52.093 | 215 | 97 | 3 | 3 | 212 | 30 | 243 | 1.11e-71 | 219 |
| MS.gene048962.t1 | AT3G28007 | 47.511 | 221 | 114 | 1 | 3 | 221 | 28 | 248 | 9.52e-65 | 201 |
| MS.gene048962.t1 | AT5G62850 | 52.096 | 167 | 80 | 0 | 3 | 169 | 28 | 194 | 2.74e-63 | 196 |
| MS.gene048962.t1 | AT5G40260 | 46.479 | 213 | 108 | 5 | 4 | 212 | 29 | 239 | 3.15e-55 | 176 |
| MS.gene048962.t1 | AT1G21460 | 40.639 | 219 | 125 | 3 | 4 | 218 | 26 | 243 | 1.33e-45 | 152 |
| MS.gene048962.t1 | AT5G40260 | 50.311 | 161 | 76 | 3 | 4 | 161 | 29 | 188 | 2.66e-44 | 147 |
| MS.gene048962.t1 | AT4G15920 | 41.398 | 186 | 106 | 2 | 4 | 188 | 26 | 209 | 1.21e-39 | 136 |
| MS.gene048962.t1 | AT2G39060 | 37.681 | 207 | 125 | 2 | 3 | 207 | 29 | 233 | 3.90e-37 | 130 |
| MS.gene048962.t1 | AT5G53190 | 35.808 | 229 | 136 | 3 | 4 | 221 | 27 | 255 | 5.45e-37 | 130 |
| MS.gene048962.t1 | AT5G13170 | 33.491 | 212 | 135 | 3 | 3 | 213 | 31 | 237 | 4.89e-36 | 129 |
| MS.gene048962.t1 | AT1G21460 | 41.566 | 166 | 96 | 1 | 4 | 169 | 26 | 190 | 7.85e-36 | 125 |
| MS.gene048962.t1 | AT3G16690 | 37.173 | 191 | 116 | 3 | 4 | 193 | 26 | 213 | 1.97e-35 | 125 |
| MS.gene048962.t1 | AT3G16690 | 37.173 | 191 | 116 | 3 | 4 | 193 | 61 | 248 | 4.23e-35 | 125 |
| MS.gene048962.t1 | AT5G50790 | 35.979 | 189 | 117 | 3 | 3 | 190 | 29 | 214 | 4.09e-34 | 123 |
| MS.gene048962.t1 | AT4G25010 | 36.458 | 192 | 117 | 4 | 3 | 191 | 29 | 218 | 5.53e-34 | 123 |
| MS.gene048962.t1 | AT5G50800 | 35.294 | 204 | 123 | 5 | 3 | 203 | 29 | 226 | 1.23e-33 | 122 |
| MS.gene048962.t1 | AT3G48740 | 34.862 | 218 | 134 | 5 | 3 | 215 | 31 | 245 | 2.13e-32 | 119 |
| MS.gene048962.t1 | AT3G14770 | 32.632 | 190 | 127 | 1 | 3 | 192 | 34 | 222 | 2.19e-32 | 117 |
| MS.gene048962.t1 | AT5G23660 | 32.727 | 220 | 130 | 5 | 3 | 211 | 31 | 243 | 3.74e-31 | 115 |
| MS.gene048962.t1 | AT3G16690 | 33.553 | 152 | 96 | 4 | 4 | 153 | 26 | 174 | 3.56e-15 | 71.6 |
Find 53 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTCGTGGATTTGTAAT+AGG | 0.284874 | 4.1:-4260963 | None:intergenic |
| TCCATATCTCTTGCTTCCTT+TGG | 0.288349 | 4.1:+4260722 | MS.gene048962:CDS |
| CGGCATGTACTCAACGCTTT+TGG | 0.323810 | 4.1:-4260696 | None:intergenic |
| GTTCAACAACTAGCCATATA+AGG | 0.367693 | 4.1:-4260448 | None:intergenic |
| AACAATGTTCCAATTCCATT+TGG | 0.370842 | 4.1:-4260911 | None:intergenic |
| AAAGGCTCAAGGTCCTTATA+TGG | 0.375348 | 4.1:+4260435 | MS.gene048962:CDS |
| TCTCAGATACCAAATGGAAT+TGG | 0.403030 | 4.1:+4260902 | MS.gene048962:intron |
| TCTCTTGCTTCCTTTGGAAA+TGG | 0.406539 | 4.1:+4260728 | MS.gene048962:CDS |
| CACACAACCTGAGCCGTTGA+TGG | 0.406714 | 4.1:-4260363 | None:intergenic |
| TTCCATATCGCTATAAAAGT+TGG | 0.411511 | 4.1:-4260224 | None:intergenic |
| GGCAGCAATTTGCATCTTCG+TGG | 0.418333 | 4.1:-4260975 | None:intergenic |
| CCTTTGGAAATGGCGTGGCT+TGG | 0.423587 | 4.1:+4260738 | MS.gene048962:CDS |
| TCCAAAGGAAGCAAGAGATA+TGG | 0.427981 | 4.1:-4260723 | None:intergenic |
| CAGTGATGAATTTGTCGAAA+GGG | 0.459298 | 4.1:-4260778 | None:intergenic |
| GAGAAACGCTCTGCCATTGT+TGG | 0.471947 | 4.1:+4260524 | MS.gene048962:CDS |
| GTTAACTCTCAGATACCAAA+TGG | 0.484093 | 4.1:+4260896 | MS.gene048962:intron |
| GGTGGACCTGTCGCAGGTTG+TGG | 0.488759 | 4.1:+4261018 | MS.gene048962:CDS |
| TTTATAGCGATATGGAAGAA+AGG | 0.498850 | 4.1:+4260230 | MS.gene048962:CDS |
| GTTACCACGAGCACACTGTC+CGG | 0.508579 | 4.1:-4260341 | None:intergenic |
| ACACTGTCCGGGTGCACCAT+AGG | 0.509552 | 4.1:-4260329 | None:intergenic |
| GTGGTAACCATCAACGGCTC+AGG | 0.509993 | 4.1:+4260356 | MS.gene048962:CDS |
| CGGTCTGCCTATGGTGCACC+CGG | 0.520295 | 4.1:+4260322 | MS.gene048962:CDS |
| TTTACTCTGACGGCAACAAA+AGG | 0.521272 | 4.1:+4260417 | MS.gene048962:CDS |
| CACTTGTTAACTGCATGGTA+TGG | 0.530608 | 4.1:+4260291 | MS.gene048962:CDS |
| CTCTTCTTGATTTACTCTGA+CGG | 0.534097 | 4.1:+4260407 | MS.gene048962:CDS |
| TTAACAAGTGTTGCTAGGTA+TGG | 0.535842 | 4.1:-4260278 | None:intergenic |
| TGTTGCACCTTTAGCTGTGA+TGG | 0.536427 | 4.1:+4260580 | MS.gene048962:CDS |
| GTTTCTCAACGTTGTGAACA+AGG | 0.538020 | 4.1:-4260508 | None:intergenic |
| TTACTCACCATCACAGCTAA+AGG | 0.540652 | 4.1:-4260587 | None:intergenic |
| GACACTGTACGGTCTGCCTA+TGG | 0.541423 | 4.1:+4260313 | MS.gene048962:CDS |
| TACCAACCACAACCTGCGAC+AGG | 0.542441 | 4.1:-4261024 | None:intergenic |
| CAGAAAAGCCAACAAAATAG+AGG | 0.552383 | 4.1:+4260997 | MS.gene048962:CDS |
| TGCTTCCTTTGGAAATGGCG+TGG | 0.555009 | 4.1:+4260733 | MS.gene048962:CDS |
| TCGCAGGTTGTGGTTGGTAA+TGG | 0.556629 | 4.1:+4261028 | MS.gene048962:CDS |
| AATAGAGGTGGACCTGTCGC+AGG | 0.566683 | 4.1:+4261012 | MS.gene048962:CDS |
| TGCATGGTATGGACACTGTA+CGG | 0.572643 | 4.1:+4260302 | MS.gene048962:CDS |
| TTACCACGAGCACACTGTCC+GGG | 0.578027 | 4.1:-4260340 | None:intergenic |
| CCAAGCCACGCCATTTCCAA+AGG | 0.587535 | 4.1:-4260738 | None:intergenic |
| GACCTGTCGCAGGTTGTGGT+TGG | 0.599344 | 4.1:+4261022 | MS.gene048962:CDS |
| ACAGTGATGAATTTGTCGAA+AGG | 0.608889 | 4.1:-4260779 | None:intergenic |
| TGACGGCAACAAAAGGCTCA+AGG | 0.609818 | 4.1:+4260424 | MS.gene048962:CDS |
| AGCAACACTTGTTAACTGCA+TGG | 0.620744 | 4.1:+4260286 | MS.gene048962:CDS |
| TGATGAATTTGTCGAAAGGG+AGG | 0.624154 | 4.1:-4260775 | None:intergenic |
| AATGCATGTGGTACCAACAA+TGG | 0.625643 | 4.1:-4260537 | None:intergenic |
| TGCAGTTAACAAGTGTTGCT+AGG | 0.625952 | 4.1:-4260283 | None:intergenic |
| GTGCTCGTGGTAACCATCAA+CGG | 0.626042 | 4.1:+4260350 | MS.gene048962:CDS |
| AGTGTTGCTAGGTATGGTGC+TGG | 0.626105 | 4.1:-4260272 | None:intergenic |
| GCACCCGGACAGTGTGCTCG+TGG | 0.635101 | 4.1:+4260337 | MS.gene048962:CDS |
| AAAAGCCAACAAAATAGAGG+TGG | 0.637451 | 4.1:+4261000 | MS.gene048962:CDS |
| GAAGCAAGAGATATGGATAG+CGG | 0.682569 | 4.1:-4260716 | None:intergenic |
| TGGTTGGTAATGGTAACCAA+CGG | 0.690762 | 4.1:+4261038 | MS.gene048962:CDS |
| GATATGGAAGAAAGGATCTG+TGG | 0.707244 | 4.1:+4260238 | MS.gene048962:CDS |
| AATGTTGAAGACAATGCATG+TGG | 0.750010 | 4.1:-4260549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTATTCAATTAAACAA+GGG | - | chr4.1:4260180-4260199 | None:intergenic | 15.0% |
| !! | CACAAATCAATAAAAAAAAA+GGG | - | chr4.1:4260071-4260090 | None:intergenic | 15.0% |
| !! | TACAATTATTCAATTAAACA+AGG | - | chr4.1:4260181-4260200 | None:intergenic | 15.0% |
| !! | TCCAAAAAAATATATAATAC+AGG | + | chr4.1:4260201-4260220 | MS.gene048962:intron | 15.0% |
| !!! | GATTTTTTTCTTTTTTTTCT+AGG | + | chr4.1:4260114-4260133 | MS.gene048962:intron | 15.0% |
| !! | AAACACTTAATCTAAATCTT+TGG | + | chr4.1:4260619-4260638 | MS.gene048962:intron | 20.0% |
| !! | CAATTATTCAATTAAACAAG+GGG | - | chr4.1:4260179-4260198 | None:intergenic | 20.0% |
| !! | GCACAAATCAATAAAAAAAA+AGG | - | chr4.1:4260072-4260091 | None:intergenic | 20.0% |
| !!! | GCCTGTATTATATATTTTTT+TGG | - | chr4.1:4260205-4260224 | None:intergenic | 20.0% |
| ! | ATCAATATGTTGAGGAAAAA+GGG | - | chr4.1:4260832-4260851 | None:intergenic | 25.0% |
| ! | CTTAATCTAAATCTTTGGTT+TGG | + | chr4.1:4260624-4260643 | MS.gene048962:intron | 25.0% |
| ! | GAAAAAGGGAAAAAAACAAA+AGG | - | chr4.1:4260818-4260837 | None:intergenic | 25.0% |
| ! | TCTATTTCATCAATATGTTG+AGG | - | chr4.1:4260840-4260859 | None:intergenic | 25.0% |
| ! | TTAACAAAGAACAACAACAA+TGG | - | chr4.1:4260881-4260900 | None:intergenic | 25.0% |
| ! | TTCTAGGTTAAAGAAGAATA+TGG | + | chr4.1:4260130-4260149 | MS.gene048962:intron | 25.0% |
| AACAATGTTCCAATTCCATT+TGG | - | chr4.1:4260914-4260933 | None:intergenic | 30.0% | |
| CATCAATATGTTGAGGAAAA+AGG | - | chr4.1:4260833-4260852 | None:intergenic | 30.0% | |
| TGAAATAGACATAAAGCGAA+TGG | + | chr4.1:4260851-4260870 | MS.gene048962:intron | 30.0% | |
| TTCATTTATTGCTCCTTAAC+CGG | + | chr4.1:4260027-4260046 | MS.gene048962:intron | 30.0% | |
| TTCCATATCGCTATAAAAGT+TGG | - | chr4.1:4260227-4260246 | None:intergenic | 30.0% | |
| TTTATAGCGATATGGAAGAA+AGG | + | chr4.1:4260230-4260249 | MS.gene048962:CDS | 30.0% | |
| ! | AATTGGAACATTGTTTTCTG+TGG | + | chr4.1:4260919-4260938 | MS.gene048962:CDS | 30.0% |
| ! | TTGAAGTATTTGACAGAAAC+TGG | + | chr4.1:4260664-4260683 | MS.gene048962:intron | 30.0% |
| AAAAAAATCTTGCCCCAACA+TGG | - | chr4.1:4260103-4260122 | None:intergenic | 35.0% | |
| AAAAGCCAACAAAATAGAGG+TGG | + | chr4.1:4261000-4261019 | MS.gene048962:CDS | 35.0% | |
| AATGTTGAAGACAATGCATG+TGG | - | chr4.1:4260552-4260571 | None:intergenic | 35.0% | |
| ACAGTGATGAATTTGTCGAA+AGG | - | chr4.1:4260782-4260801 | None:intergenic | 35.0% | |
| CAGAAAAGCCAACAAAATAG+AGG | + | chr4.1:4260997-4261016 | MS.gene048962:CDS | 35.0% | |
| CAGTGATGAATTTGTCGAAA+GGG | - | chr4.1:4260781-4260800 | None:intergenic | 35.0% | |
| CATCTTCGTGGATTTGTAAT+AGG | - | chr4.1:4260966-4260985 | None:intergenic | 35.0% | |
| CTCTTCTTGATTTACTCTGA+CGG | + | chr4.1:4260407-4260426 | MS.gene048962:CDS | 35.0% | |
| GTTAACTCTCAGATACCAAA+TGG | + | chr4.1:4260896-4260915 | MS.gene048962:intron | 35.0% | |
| GTTCAACAACTAGCCATATA+AGG | - | chr4.1:4260451-4260470 | None:intergenic | 35.0% | |
| TCATTTATTGCTCCTTAACC+GGG | + | chr4.1:4260028-4260047 | MS.gene048962:intron | 35.0% | |
| TCTCAGATACCAAATGGAAT+TGG | + | chr4.1:4260902-4260921 | MS.gene048962:intron | 35.0% | |
| ! | TTAACAAGTGTTGCTAGGTA+TGG | - | chr4.1:4260281-4260300 | None:intergenic | 35.0% |
| !! | AAAAAAAGGGTGTTGCTAAC+CGG | - | chr4.1:4260058-4260077 | None:intergenic | 35.0% |
| !!! | CTCTATTTTGTTGGCTTTTC+TGG | - | chr4.1:4260999-4261018 | None:intergenic | 35.0% |
| AAAGGCTCAAGGTCCTTATA+TGG | + | chr4.1:4260435-4260454 | MS.gene048962:CDS | 40.0% | |
| AATGCATGTGGTACCAACAA+TGG | - | chr4.1:4260540-4260559 | None:intergenic | 40.0% | |
| ATTTATTGCTCCTTAACCGG+GGG | + | chr4.1:4260030-4260049 | MS.gene048962:intron | 40.0% | |
| CATTTATTGCTCCTTAACCG+GGG | + | chr4.1:4260029-4260048 | MS.gene048962:intron | 40.0% | |
| GAAGCAAGAGATATGGATAG+CGG | - | chr4.1:4260719-4260738 | None:intergenic | 40.0% | |
| GATATGGAAGAAAGGATCTG+TGG | + | chr4.1:4260238-4260257 | MS.gene048962:CDS | 40.0% | |
| GTTTCTCAACGTTGTGAACA+AGG | - | chr4.1:4260511-4260530 | None:intergenic | 40.0% | |
| TCCAAAGGAAGCAAGAGATA+TGG | - | chr4.1:4260726-4260745 | None:intergenic | 40.0% | |
| TCCATATCTCTTGCTTCCTT+TGG | + | chr4.1:4260722-4260741 | MS.gene048962:CDS | 40.0% | |
| TGATGAATTTGTCGAAAGGG+AGG | - | chr4.1:4260778-4260797 | None:intergenic | 40.0% | |
| TTACTCACCATCACAGCTAA+AGG | - | chr4.1:4260590-4260609 | None:intergenic | 40.0% | |
| TTTACTCTGACGGCAACAAA+AGG | + | chr4.1:4260417-4260436 | MS.gene048962:CDS | 40.0% | |
| ! | AGCAACACTTGTTAACTGCA+TGG | + | chr4.1:4260286-4260305 | MS.gene048962:CDS | 40.0% |
| ! | CACTTGTTAACTGCATGGTA+TGG | + | chr4.1:4260291-4260310 | MS.gene048962:CDS | 40.0% |
| ! | GGCCAACTTTTATAGCGATA+TGG | + | chr4.1:4260222-4260241 | MS.gene048962:intron | 40.0% |
| ! | TCTCTTGCTTCCTTTGGAAA+TGG | + | chr4.1:4260728-4260747 | MS.gene048962:CDS | 40.0% |
| ! | TGCAGTTAACAAGTGTTGCT+AGG | - | chr4.1:4260286-4260305 | None:intergenic | 40.0% |
| !! | TGGTTGGTAATGGTAACCAA+CGG | + | chr4.1:4261038-4261057 | MS.gene048962:CDS | 40.0% |
| TGCATGGTATGGACACTGTA+CGG | + | chr4.1:4260302-4260321 | MS.gene048962:CDS | 45.0% | |
| TGTGCCTGTAATGCCATGTT+GGG | + | chr4.1:4260087-4260106 | MS.gene048962:intron | 45.0% | |
| TGTTGCACCTTTAGCTGTGA+TGG | + | chr4.1:4260580-4260599 | MS.gene048962:CDS | 45.0% | |
| TTGTGCCTGTAATGCCATGT+TGG | + | chr4.1:4260086-4260105 | MS.gene048962:intron | 45.0% | |
| ! | CAGGTCCACCTCTATTTTGT+TGG | - | chr4.1:4261008-4261027 | None:intergenic | 45.0% |
| GAGAAACGCTCTGCCATTGT+TGG | + | chr4.1:4260524-4260543 | MS.gene048962:CDS | 50.0% | |
| GGCAGCAATTTGCATCTTCG+TGG | - | chr4.1:4260978-4260997 | None:intergenic | 50.0% | |
| GTGCCTGTAATGCCATGTTG+GGG | + | chr4.1:4260088-4260107 | MS.gene048962:intron | 50.0% | |
| GTGCTCGTGGTAACCATCAA+CGG | + | chr4.1:4260350-4260369 | MS.gene048962:CDS | 50.0% | |
| TGACGGCAACAAAAGGCTCA+AGG | + | chr4.1:4260424-4260443 | MS.gene048962:CDS | 50.0% | |
| TTGCCCCAACATGGCATTAC+AGG | - | chr4.1:4260094-4260113 | None:intergenic | 50.0% | |
| ! | AGTGTTGCTAGGTATGGTGC+TGG | - | chr4.1:4260275-4260294 | None:intergenic | 50.0% |
| ! | CGGCATGTACTCAACGCTTT+TGG | - | chr4.1:4260699-4260718 | None:intergenic | 50.0% |
| ! | TGCTTCCTTTGGAAATGGCG+TGG | + | chr4.1:4260733-4260752 | MS.gene048962:CDS | 50.0% |
| !! | TCGCAGGTTGTGGTTGGTAA+TGG | + | chr4.1:4261028-4261047 | MS.gene048962:CDS | 50.0% |
| AATAGAGGTGGACCTGTCGC+AGG | + | chr4.1:4261012-4261031 | MS.gene048962:CDS | 55.0% | |
| CACACAACCTGAGCCGTTGA+TGG | - | chr4.1:4260366-4260385 | None:intergenic | 55.0% | |
| CCAAGCCACGCCATTTCCAA+AGG | - | chr4.1:4260741-4260760 | None:intergenic | 55.0% | |
| GACACTGTACGGTCTGCCTA+TGG | + | chr4.1:4260313-4260332 | MS.gene048962:CDS | 55.0% | |
| GTGGTAACCATCAACGGCTC+AGG | + | chr4.1:4260356-4260375 | MS.gene048962:CDS | 55.0% | |
| GTTACCACGAGCACACTGTC+CGG | - | chr4.1:4260344-4260363 | None:intergenic | 55.0% | |
| TACCAACCACAACCTGCGAC+AGG | - | chr4.1:4261027-4261046 | None:intergenic | 55.0% | |
| TTACCACGAGCACACTGTCC+GGG | - | chr4.1:4260343-4260362 | None:intergenic | 55.0% | |
| ! | CCTTTGGAAATGGCGTGGCT+TGG | + | chr4.1:4260738-4260757 | MS.gene048962:CDS | 55.0% |
| ACACTGTCCGGGTGCACCAT+AGG | - | chr4.1:4260332-4260351 | None:intergenic | 60.0% | |
| GACCTGTCGCAGGTTGTGGT+TGG | + | chr4.1:4261022-4261041 | MS.gene048962:CDS | 60.0% | |
| CGGTCTGCCTATGGTGCACC+CGG | + | chr4.1:4260322-4260341 | MS.gene048962:CDS | 65.0% | |
| CTAACCGGTGCCCCCGGTTA+AGG | - | chr4.1:4260043-4260062 | None:intergenic | 65.0% | |
| GGTGGACCTGTCGCAGGTTG+TGG | + | chr4.1:4261018-4261037 | MS.gene048962:CDS | 65.0% | |
| ! | GTGTTGCTAACCGGTGCCCC+CGG | - | chr4.1:4260049-4260068 | None:intergenic | 65.0% |
| ! | TGCTCCTTAACCGGGGGCAC+CGG | + | chr4.1:4260036-4260055 | MS.gene048962:intron | 65.0% |
| GCACCCGGACAGTGTGCTCG+TGG | + | chr4.1:4260337-4260356 | MS.gene048962:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4259954 | 4261069 | 4259954 | ID=MS.gene048962 |
| chr4.1 | mRNA | 4259954 | 4261069 | 4259954 | ID=MS.gene048962.t1;Parent=MS.gene048962 |
| chr4.1 | exon | 4259954 | 4259958 | 4259954 | ID=MS.gene048962.t1.exon1;Parent=MS.gene048962.t1 |
| chr4.1 | CDS | 4259954 | 4259958 | 4259954 | ID=cds.MS.gene048962.t1;Parent=MS.gene048962.t1 |
| chr4.1 | exon | 4260223 | 4260601 | 4260223 | ID=MS.gene048962.t1.exon2;Parent=MS.gene048962.t1 |
| chr4.1 | CDS | 4260223 | 4260601 | 4260223 | ID=cds.MS.gene048962.t1;Parent=MS.gene048962.t1 |
| chr4.1 | exon | 4260680 | 4260799 | 4260680 | ID=MS.gene048962.t1.exon3;Parent=MS.gene048962.t1 |
| chr4.1 | CDS | 4260680 | 4260799 | 4260680 | ID=cds.MS.gene048962.t1;Parent=MS.gene048962.t1 |
| chr4.1 | exon | 4260908 | 4261069 | 4260908 | ID=MS.gene048962.t1.exon4;Parent=MS.gene048962.t1 |
| chr4.1 | CDS | 4260908 | 4261069 | 4260908 | ID=cds.MS.gene048962.t1;Parent=MS.gene048962.t1 |
| Gene Sequence |
| Protein sequence |