AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25769


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25769.t1 MTR_3g080990 99.184 245 2 0 1 245 1 245 5.18e-176 494
MS.gene25769.t1 MTR_3g081030 99.074 216 2 0 254 469 1 216 1.85e-157 445
MS.gene25769.t1 MTR_8g099730 69.008 242 74 1 2 243 12 252 9.06e-122 356
MS.gene25769.t1 MTR_8g099730 68.783 189 58 1 55 243 1 188 8.05e-91 274
MS.gene25769.t1 MTR_6g007633 53.275 229 106 1 1 228 1 229 4.33e-79 246
MS.gene25769.t1 MTR_6g007637 54.460 213 96 1 3 214 4 216 1.49e-75 237
MS.gene25769.t1 MTR_6g007623 51.131 221 107 1 8 227 5 225 7.26e-70 222
MS.gene25769.t1 MTR_4g106990 49.215 191 97 0 28 218 35 225 2.07e-61 200
MS.gene25769.t1 MTR_1g029380 44.813 241 119 5 5 233 2 240 8.46e-56 186
MS.gene25769.t1 MTR_8g042490 42.009 219 126 1 2 220 8 225 1.70e-53 179
MS.gene25769.t1 MTR_3g089125 46.411 209 111 1 5 213 2 209 1.97e-53 180
MS.gene25769.t1 MTR_6g007610 43.777 233 113 4 1 220 1 228 1.24e-50 172
MS.gene25769.t1 MTR_2g073190 40.000 225 133 2 1 225 7 229 1.23e-46 172
MS.gene25769.t1 MTR_2g436310 42.791 215 121 1 11 225 8 220 2.04e-46 161
MS.gene25769.t1 MTR_5g067530 41.935 217 116 4 10 222 12 222 2.92e-45 159
MS.gene25769.t1 MTR_8g096320 41.395 215 125 1 3 217 4 217 1.12e-44 157
MS.gene25769.t1 MTR_1g028460 39.720 214 127 1 4 215 2 215 7.36e-43 152
MS.gene25769.t1 MTR_3g090940 34.177 237 154 1 4 238 2 238 6.71e-42 149
MS.gene25769.t1 MTR_3g090950 35.043 234 148 3 8 238 6 238 9.65e-42 149
MS.gene25769.t1 MTR_8g096310 34.553 246 146 5 10 247 11 249 1.31e-41 149
MS.gene25769.t1 MTR_3g098910 35.526 228 141 4 12 237 13 236 2.56e-40 147
MS.gene25769.t1 MTR_2g007890 38.095 210 125 3 12 220 16 221 9.55e-40 145
MS.gene25769.t1 MTR_5g092600 38.537 205 123 2 23 227 24 225 9.33e-39 141
MS.gene25769.t1 MTR_7g007490 35.950 242 144 3 10 243 12 250 5.04e-38 139
MS.gene25769.t1 MTR_3g098930 40.513 195 106 3 4 194 6 194 2.48e-35 130
MS.gene25769.t1 MTR_7g405730 39.706 204 117 3 12 213 13 212 3.87e-31 121
MS.gene25769.t1 MTR_7g405710 38.605 215 126 4 12 224 13 223 2.11e-30 119
MS.gene25769.t1 MTR_8g096320 39.877 163 97 1 55 217 1 162 2.34e-29 114
MS.gene25769.t1 MTR_4g030070 41.176 136 79 1 285 420 24 158 6.75e-25 102
MS.gene25769.t1 MTR_3g071300 33.333 165 91 5 282 436 17 172 5.01e-18 82.0
MS.gene25769.t1 MTR_4g056590 48.649 74 36 1 345 418 98 169 8.11e-17 79.0
MS.gene25769.t1 MTR_1g074190 42.063 126 57 5 299 417 60 176 4.53e-15 76.6
MS.gene25769.t1 MTR_1g082550 46.970 66 35 0 372 437 127 192 2.79e-14 74.7
MS.gene25769.t1 MTR_8g032690 54.348 46 21 0 372 417 19 64 3.98e-14 68.9
MS.gene25769.t1 MTR_8g063660 36.364 121 70 2 348 467 69 183 4.09e-14 73.6
MS.gene25769.t1 MTR_4g063070 37.634 93 52 2 332 418 290 382 5.69e-14 73.9
MS.gene25769.t1 MTR_7g113800 33.974 156 86 6 268 419 25 167 8.94e-14 72.8
MS.gene25769.t1 MTR_5g026730 31.967 122 79 2 299 420 25 142 2.27e-13 68.6
MS.gene25769.t1 MTR_8g099515 46.154 65 32 1 353 414 315 379 3.92e-13 71.2
MS.gene25769.t1 MTR_6g087150 33.333 123 75 2 296 417 48 164 6.99e-13 70.5
MS.gene25769.t1 MTR_7g117540 36.290 124 64 3 302 420 36 149 8.82e-13 69.3
MS.gene25769.t1 MTR_5g064990 38.983 118 56 7 344 457 113 218 1.30e-12 69.7
MS.gene25769.t1 MTR_4g108830 38.806 67 41 0 348 414 122 188 2.01e-12 66.2
MS.gene25769.t1 MTR_8g023400 32.836 134 73 5 293 414 31 159 2.28e-12 68.2
MS.gene25769.t1 MTR_4g108830 38.806 67 41 0 348 414 150 216 2.67e-12 66.6
MS.gene25769.t1 MTR_4g106680 43.662 71 39 1 348 417 107 177 2.89e-12 67.8
MS.gene25769.t1 MTR_6g007737 44.444 81 44 1 348 427 134 214 3.43e-12 68.2
MS.gene25769.t1 MTR_3g110190 35.484 124 67 3 298 414 17 134 4.53e-12 67.8
MS.gene25769.t1 MTR_8g089880 45.455 66 29 1 372 437 153 211 4.61e-12 66.6
MS.gene25769.t1 MTR_1g070140 32.867 143 82 5 293 423 41 181 4.92e-12 67.4
MS.gene25769.t1 MTR_7g096690 32.704 159 92 5 289 438 8 160 4.94e-12 67.4
MS.gene25769.t1 MTR_8g028465 40.000 75 44 1 346 420 89 162 8.11e-12 64.7
MS.gene25769.t1 MTR_2g090905 34.375 96 52 2 341 429 33 124 8.74e-12 62.8
MS.gene25769.t1 MTR_3g099650 32.143 140 80 6 286 419 53 183 8.98e-12 67.0
MS.gene25769.t1 MTR_8g066780 46.032 63 34 0 372 434 142 204 1.04e-11 66.6
MS.gene25769.t1 MTR_7g116200 40.678 59 35 0 356 414 77 135 1.09e-11 63.5
MS.gene25769.t1 MTR_5g026720 53.061 49 23 0 372 420 93 141 1.10e-11 63.5
MS.gene25769.t1 MTR_2g436100 42.857 77 41 2 344 419 92 166 1.10e-11 65.9
MS.gene25769.t1 MTR_4g120270 62.791 43 16 0 372 414 104 146 1.14e-11 65.5
MS.gene25769.t1 MTR_5g034790 45.588 68 36 1 348 414 117 184 1.42e-11 66.2
MS.gene25769.t1 MTR_1g043410 57.778 45 19 0 370 414 121 165 1.52e-11 65.9
MS.gene25769.t1 MTR_3g012550 27.907 129 90 1 295 420 28 156 1.85e-11 63.2
MS.gene25769.t1 MTR_4g129420 44.928 69 36 1 352 418 122 190 2.08e-11 66.2
MS.gene25769.t1 MTR_3g100400 52.083 48 23 0 372 419 156 203 2.21e-11 65.9
MS.gene25769.t1 MTR_1g011380 39.655 58 34 1 365 422 334 390 2.35e-11 65.9
MS.gene25769.t1 MTR_8g027745 51.923 52 25 0 369 420 311 362 2.54e-11 65.5
MS.gene25769.t1 MTR_2g044570 46.296 54 29 0 372 425 83 136 3.01e-11 64.7
MS.gene25769.t1 MTR_2g096350 35.955 89 52 2 331 414 89 177 3.05e-11 63.5
MS.gene25769.t1 MTR_5g009200 44.615 65 33 1 353 414 328 392 3.61e-11 65.1
MS.gene25769.t1 MTR_7g116210 41.818 55 32 0 360 414 23 77 3.73e-11 60.5
MS.gene25769.t1 MTR_3g095560 37.662 77 46 1 351 425 113 189 3.87e-11 63.5
MS.gene25769.t1 MTR_8g009190 47.170 53 28 0 372 424 105 157 4.03e-11 64.3
MS.gene25769.t1 MTR_1g056350 44.118 68 34 2 357 420 84 151 4.09e-11 62.0
MS.gene25769.t1 MTR_8g099495 48.980 49 25 0 366 414 341 389 5.34e-11 64.7
MS.gene25769.t1 MTR_5g071930 30.631 111 75 1 308 418 27 135 5.65e-11 62.0
MS.gene25769.t1 MTR_8g092960 38.272 81 47 2 353 430 109 189 6.26e-11 62.4
MS.gene25769.t1 MTR_3g091620 37.778 90 52 2 363 452 120 205 6.28e-11 64.3
MS.gene25769.t1 MTR_8g092840 38.272 81 47 2 353 430 119 199 6.90e-11 62.4
MS.gene25769.t1 MTR_7g079280 35.526 76 46 1 348 420 81 156 7.05e-11 61.6
MS.gene25769.t1 MTR_8g073120 37.143 70 41 1 348 414 71 140 7.74e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25769.t1 AT4G10850 59.483 232 92 2 8 238 10 240 8.95e-93 282
MS.gene25769.t1 AT1G66770 54.132 242 101 3 8 246 10 244 2.93e-84 260
MS.gene25769.t1 AT5G62850 48.319 238 118 1 1 233 1 238 1.13e-80 250
MS.gene25769.t1 AT3G28007 53.456 217 101 0 1 217 1 217 1.73e-69 222
MS.gene25769.t1 AT5G62850 50.515 194 96 0 1 194 1 194 2.01e-68 218
MS.gene25769.t1 AT5G40260 48.214 224 111 4 1 220 1 223 9.32e-59 193
MS.gene25769.t1 AT1G21460 46.581 234 121 4 5 236 2 233 9.07e-58 191
MS.gene25769.t1 AT4G15920 45.098 204 109 2 11 213 8 209 1.59e-49 169
MS.gene25769.t1 AT5G50800 37.722 281 149 8 10 286 11 269 6.88e-49 169
MS.gene25769.t1 AT5G40260 46.535 202 103 4 1 198 1 201 1.63e-48 166
MS.gene25769.t1 AT4G25010 41.743 218 120 4 3 216 4 218 1.36e-47 166
MS.gene25769.t1 AT1G21460 47.644 191 97 3 5 194 2 190 1.46e-47 163
MS.gene25769.t1 AT3G16690 43.541 209 114 3 11 218 8 213 2.60e-47 163
MS.gene25769.t1 AT3G16690 43.541 209 114 3 11 218 43 248 2.85e-47 164
MS.gene25769.t1 AT4G24015 62.745 153 51 2 274 423 7 156 4.56e-47 160
MS.gene25769.t1 AT3G14770 36.986 219 137 1 2 220 8 225 7.68e-44 154
MS.gene25769.t1 AT5G23660 41.176 204 118 1 10 213 13 214 4.83e-43 154
MS.gene25769.t1 AT2G39060 37.168 226 139 2 12 237 13 235 9.61e-43 152
MS.gene25769.t1 AT5G13170 38.496 226 130 4 10 230 13 234 1.91e-42 152
MS.gene25769.t1 AT5G53190 38.462 208 126 1 8 213 6 213 4.98e-41 147
MS.gene25769.t1 AT5G50790 41.232 211 114 5 9 215 10 214 6.99e-41 148
MS.gene25769.t1 AT3G48740 37.788 217 132 2 10 225 13 227 2.01e-38 141
MS.gene25769.t1 AT4G10150 40.411 146 80 2 277 419 17 158 3.66e-30 117
MS.gene25769.t1 AT1G33480 39.267 191 103 3 285 468 19 203 7.46e-30 117
MS.gene25769.t1 AT3G16690 42.958 142 78 2 11 151 8 147 8.37e-25 101
MS.gene25769.t1 AT4G10160 35.417 144 84 3 276 419 10 144 1.97e-20 90.1
MS.gene25769.t1 AT1G04360 36.129 155 88 5 267 417 32 179 7.26e-15 76.6
MS.gene25769.t1 AT2G47560 42.169 83 45 1 340 419 73 155 2.53e-14 72.8
MS.gene25769.t1 AT5G53110 31.429 140 92 2 278 414 234 372 4.60e-14 73.9
MS.gene25769.t1 AT1G23980 30.890 191 108 5 258 427 12 199 5.47e-14 73.9
MS.gene25769.t1 AT2G35910 40.541 74 43 1 348 420 122 195 7.04e-14 71.2
MS.gene25769.t1 AT1G72200 31.013 158 83 7 298 442 69 213 8.90e-14 73.6
MS.gene25769.t1 AT2G35000 36.364 132 70 3 296 418 55 181 9.61e-14 73.2
MS.gene25769.t1 AT2G27940 33.077 130 71 4 314 443 89 202 1.72e-13 70.5
MS.gene25769.t1 AT5G57750 40.741 81 46 1 336 414 84 164 3.55e-13 68.9
MS.gene25769.t1 AT5G41440 46.429 56 29 1 363 417 68 123 4.78e-13 66.2
MS.gene25769.t1 AT3G48030 30.769 221 122 9 221 417 39 252 4.81e-13 70.9
MS.gene25769.t1 AT5G43420 54.902 51 23 0 367 417 133 183 4.94e-13 70.9
MS.gene25769.t1 AT3G16720 34.646 127 79 3 344 469 93 216 5.38e-13 70.1
MS.gene25769.t1 AT5G40250 46.970 66 35 0 372 437 143 208 6.06e-13 70.5
MS.gene25769.t1 AT4G15975 45.070 71 39 0 372 442 76 146 6.08e-13 68.9
MS.gene25769.t1 AT3G05200 26.994 163 99 5 268 423 30 179 6.96e-13 70.5
MS.gene25769.t1 AT5G07040 34.177 79 49 1 345 420 64 142 9.05e-13 66.6
MS.gene25769.t1 AT4G40070 31.298 131 80 4 301 423 47 175 1.30e-12 68.9
MS.gene25769.t1 AT4G09100 38.095 84 46 2 342 419 49 132 1.43e-12 65.1
MS.gene25769.t1 AT1G22500 58.333 48 20 0 372 419 118 165 2.58e-12 68.6
MS.gene25769.t1 AT5G10380 36.735 98 46 2 372 469 135 216 3.17e-12 67.8
MS.gene25769.t1 AT3G48030 36.923 130 61 6 302 417 52 174 3.59e-12 67.0
MS.gene25769.t1 AT2G34990 39.362 94 49 3 344 431 88 179 3.72e-12 67.8
MS.gene25769.t1 AT3G62690 43.662 71 39 1 372 442 113 182 4.25e-12 66.6
MS.gene25769.t1 AT2G34990 39.362 94 49 3 344 431 66 157 4.46e-12 67.4
MS.gene25769.t1 AT2G42360 31.507 146 87 5 277 419 20 155 5.68e-12 65.9
MS.gene25769.t1 AT5G47610 41.270 63 35 1 357 417 90 152 1.07e-11 63.5
MS.gene25769.t1 AT4G17905 51.923 52 25 0 372 423 155 206 1.10e-11 66.2
MS.gene25769.t1 AT4G17905 51.923 52 25 0 372 423 181 232 1.12e-11 66.2
MS.gene25769.t1 AT1G49230 38.272 81 49 1 364 444 123 202 1.45e-11 64.3
MS.gene25769.t1 AT3G61550 43.103 58 33 0 363 420 127 184 1.75e-11 63.9
MS.gene25769.t1 AT5G27420 28.966 145 90 5 277 417 34 169 1.96e-11 65.9
MS.gene25769.t1 AT4G30400 60.465 43 17 0 372 414 134 176 2.12e-11 66.2
MS.gene25769.t1 AT3G10910 40.541 74 39 2 348 418 89 160 2.56e-11 62.8
MS.gene25769.t1 AT2G18650 47.273 55 29 0 372 426 126 180 2.71e-11 65.9
MS.gene25769.t1 AT5G05810 52.083 48 23 0 372 419 146 193 2.83e-11 65.5
MS.gene25769.t1 AT2G42350 44.828 58 31 1 372 429 100 156 3.04e-11 63.5
MS.gene25769.t1 AT1G80400 31.707 123 67 5 296 414 287 396 4.26e-11 65.1
MS.gene25769.t1 AT5G66070 40.299 67 39 1 348 414 153 218 4.45e-11 63.2
MS.gene25769.t1 AT5G66070 40.299 67 39 1 348 414 153 218 4.45e-11 63.2
MS.gene25769.t1 AT4G28890 32.787 122 79 2 296 414 44 165 4.79e-11 65.1
MS.gene25769.t1 AT5G17600 44.776 67 33 1 370 436 140 202 5.03e-11 64.7
MS.gene25769.t1 AT1G35330 54.167 48 22 0 372 419 129 176 5.07e-11 64.3
MS.gene25769.t1 AT4G35840 35.211 71 42 1 348 414 163 233 5.14e-11 63.2
MS.gene25769.t1 AT4G26400 40.000 80 42 2 351 430 225 298 6.05e-11 64.3
MS.gene25769.t1 AT4G26400 40.000 80 42 2 351 430 225 298 6.05e-11 64.3
MS.gene25769.t1 AT3G03550 53.061 49 23 0 370 418 157 205 6.05e-11 64.3
MS.gene25769.t1 AT5G66070 40.299 67 39 1 348 414 177 242 7.71e-11 62.8
MS.gene25769.t1 AT3G43430 38.806 67 32 1 367 424 78 144 8.37e-11 61.2
MS.gene25769.t1 AT2G46160 35.714 84 45 1 348 422 105 188 8.51e-11 62.0
MS.gene25769.t1 AT2G46160 35.714 84 45 1 348 422 105 188 8.51e-11 62.0

Find 106 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCAAGATGCTATCAATT+TGG 0.243078 3.2:+70981875 MS.gene25769:CDS
CATTTGGAAACGGTGTTTCT+TGG 0.259955 3.2:+70975901 MS.gene25769:CDS
TCTGATATAATAATATTAAT+AGG 0.260444 3.2:-70981846 None:intergenic
ATATGCATGCTCTTTAATAT+TGG 0.289240 3.2:+70975680 MS.gene25769:CDS
TCCTTGCTGCTATCTGCTCT+TGG 0.294814 3.2:-70976135 None:intergenic
TTCCTATCTTTAGCTTCATT+TGG 0.307672 3.2:+70975885 MS.gene25769:CDS
TGATCTGGCAATGATGAATT+TGG 0.308427 3.2:-70981909 None:intergenic
CTGATATAATAATATTAATA+GGG 0.324452 3.2:-70981845 None:intergenic
AAACAGATGTTGTGTTTGTT+TGG 0.326329 3.2:+70981665 MS.gene25769:intron
GGATTTGACCGTGCAATTCT+TGG 0.331873 3.2:+70980795 MS.gene25769:CDS
AAAAGGGATGAGCGCATAAA+TGG 0.341443 3.2:-70975925 None:intergenic
TGCTTCACCTTTGTCTATCA+TGG 0.349245 3.2:+70975709 MS.gene25769:CDS
AGTCTTCCTTGGTTTACTCT+TGG 0.378667 3.2:+70975574 MS.gene25769:CDS
CCTTGCTGCTATCTGCTCTT+GGG 0.380467 3.2:-70976134 None:intergenic
TGGAACACATGTTTGCAATA+TGG 0.387541 3.2:-70981723 None:intergenic
TGTTTGTTTGGGAGAATTTG+AGG 0.394413 3.2:+70981677 MS.gene25769:CDS
AACAGCAGAACGTTTGTTAA+CGG 0.401198 3.2:-70975648 None:intergenic
AACATTGTCCCAATCCCATT+TGG 0.407143 3.2:-70976067 None:intergenic
TGTTTCCTTACCGCAATGAA+TGG 0.413782 3.2:-70975951 None:intergenic
CGTTGATGAACTGCATGGTT+TGG 0.424939 3.2:+70975420 MS.gene25769:CDS
TTATGCAGGCCAACATTTGT+TGG 0.425386 3.2:+70975344 MS.gene25769:intron
TATCTCAATCAGATACCAAA+TGG 0.427186 3.2:+70976052 MS.gene25769:intron
AACAAACGTTCTGCTGTTGT+TGG 0.429590 3.2:+70975653 MS.gene25769:CDS
AAGAGGCTCAAAGTCTTCCT+TGG 0.429746 3.2:+70975563 MS.gene25769:CDS
AACAGATGTTGTGTTTGTTT+GGG 0.430727 3.2:+70981666 MS.gene25769:intron
ATAGCAGCAAGGAAGAATAA+TGG 0.431178 3.2:+70976145 MS.gene25769:CDS
TTTGTTGGAATATGCAAGAA+AGG 0.432088 3.2:+70975359 MS.gene25769:CDS
GAGGAAGCACCAGCTTGATC+TGG 0.436281 3.2:-70981924 None:intergenic
CACACATCCTGCACCATTGA+TGG 0.437454 3.2:-70975492 None:intergenic
TTCCCTTGACATGATATTTG+AGG 0.439928 3.2:-70981943 None:intergenic
CGAACAGTAGTGGGTATCAT+AGG 0.440064 3.2:+70974989 MS.gene25769:CDS
TGCATGGTTTGGACTCTCTA+CGG 0.441220 3.2:+70975431 MS.gene25769:CDS
ACAAACGTTCTGCTGTTGTT+GGG 0.444778 3.2:+70975654 MS.gene25769:CDS
TTCCTTGTGGTGACCATCAA+TGG 0.447143 3.2:+70975479 MS.gene25769:CDS
ACCGCAATGAATGGGTCAAA+AGG 0.452161 3.2:-70975942 None:intergenic
AATCAGATACCAAATGGGAT+TGG 0.454981 3.2:+70976058 MS.gene25769:intron
ATCAGATACCAAATGGGATT+GGG 0.459053 3.2:+70976059 MS.gene25769:intron
GGAGGAGAACTTGAAATTTG+TGG 0.462743 3.2:-70980400 None:intergenic
AATATTAAAGAGCATGCATA+TGG 0.469160 3.2:-70975678 None:intergenic
TTCCAAATGAAGCTAAAGAT+AGG 0.471616 3.2:-70975887 None:intergenic
TTGCATATTCCAACAAATGT+TGG 0.471666 3.2:-70975353 None:intergenic
TTTGGGAGAATTTGAGGTGA+AGG 0.480510 3.2:+70981683 MS.gene25769:CDS
ATATATGAGGCAGTGGCAAA+AGG 0.487236 3.2:+70980328 MS.gene25769:intron
GCAAGGAAGAATAATGGAAA+AGG 0.488542 3.2:+70976151 MS.gene25769:CDS
GTTGGAGGAATATTGATCCT+TGG 0.489471 3.2:-70980577 None:intergenic
TCTTTAGCTTCATTTGGAAA+CGG 0.490245 3.2:+70975891 MS.gene25769:CDS
AGAAATTGCTCGAACAGTAG+TGG 0.495158 3.2:+70974979 MS.gene25769:CDS
GTTTCCTTACCGCAATGAAT+GGG 0.497693 3.2:-70975950 None:intergenic
TCTCTCCACACTTACTTCCA+AGG 0.498222 3.2:+70980560 MS.gene25769:CDS
TGATGAGGATTTACAAGCAA+GGG 0.506166 3.2:+70980840 MS.gene25769:CDS
GCATGGTTTGGACTCTCTAC+GGG 0.509664 3.2:+70975432 MS.gene25769:CDS
AATCTCATAGCCTCGTCGAT+TGG 0.509860 3.2:+70980774 MS.gene25769:intron
GAATAATAACGATAGGTAGT+TGG 0.510389 3.2:-70980595 None:intergenic
TACATATGTGGAAGAGTAGG+AGG 0.515916 3.2:-70980418 None:intergenic
GGCAATGATGAATTTGGTAA+TGG 0.517622 3.2:-70981903 None:intergenic
GAATTGAGAATATGAAAGCT+TGG 0.520047 3.2:-70980468 None:intergenic
AAACTGTGAGGGTGCACCAT+TGG 0.523843 3.2:-70975458 None:intergenic
CAACGTGGCTAGGTATGGTA+CGG 0.525635 3.2:-70975402 None:intergenic
TTCATCAACGTGGCTAGGTA+TGG 0.527477 3.2:-70975407 None:intergenic
AATCCAAATTGATAGCATCT+TGG 0.528270 3.2:-70981878 None:intergenic
ACATTGATTGCATACATCAC+TGG 0.532576 3.2:+70981745 MS.gene25769:CDS
CCGCAATGAATGGGTCAAAA+GGG 0.533348 3.2:-70975941 None:intergenic
CGGATGCATGTTCTTGTCTC+CGG 0.538109 3.2:+70975223 MS.gene25769:CDS
ATCTCAATCAGATACCAAAT+GGG 0.541436 3.2:+70976053 MS.gene25769:intron
TGATATAATAATATTAATAG+GGG 0.542049 3.2:-70981844 None:intergenic
GACTCTCTACGGGTTACCAA+TGG 0.543382 3.2:+70975442 MS.gene25769:CDS
AGTTCTTCTGAATACATATG+TGG 0.547197 3.2:-70980430 None:intergenic
AAGAAGAAGCTCTTCTCTTG+AGG 0.557389 3.2:-70980537 None:intergenic
TCCTCATCAAACAAAACTCT+AGG 0.558271 3.2:-70980826 None:intergenic
TTGATAGCATCTTGGTGAGG+TGG 0.563465 3.2:-70981870 None:intergenic
AATCTGTCAGAAGTGGTAGT+TGG 0.565227 3.2:+70976181 MS.gene25769:CDS
TGATAGCATCTTGGTGAGGT+GGG 0.565389 3.2:-70981869 None:intergenic
GAATACATATGTGGAAGAGT+AGG 0.569152 3.2:-70980421 None:intergenic
TAATAACGATAGGTAGTTGG+AGG 0.570622 3.2:-70980592 None:intergenic
ACCACAGGAAATGTCATCGC+CGG 0.571722 3.2:+70975203 MS.gene25769:intron
GTGGTGACCATCAATGGTGC+AGG 0.573604 3.2:+70975485 MS.gene25769:CDS
CTTCCTCAAATATCATGTCA+AGG 0.573766 3.2:+70981940 MS.gene25769:CDS
GAAATTGCTCGAACAGTAGT+GGG 0.576969 3.2:+70974980 MS.gene25769:CDS
TCAATGAAATAAATGAGAGA+AGG 0.580735 3.2:-70975613 None:intergenic
CGGAGACAAGAACATGCATC+CGG 0.583108 3.2:-70975222 None:intergenic
TTGATCCTTGGAAGTAAGTG+TGG 0.583511 3.2:-70980565 None:intergenic
AACGTGGCTAGGTATGGTAC+GGG 0.585953 3.2:-70975401 None:intergenic
AGAGATGAATCTGTCAGAAG+TGG 0.596826 3.2:+70976174 MS.gene25769:CDS
GGAAGATGAATAATAACGAT+AGG 0.599411 3.2:-70980602 None:intergenic
TCATCATTGCCAGATCAAGC+TGG 0.602782 3.2:+70981915 MS.gene25769:CDS
CACCATTGATGGTCACCACA+AGG 0.603803 3.2:-70975481 None:intergenic
TTCCTCAAATATCATGTCAA+GGG 0.604222 3.2:+70981941 MS.gene25769:CDS
TGCAGTTCATCAACGTGGCT+AGG 0.615839 3.2:-70975412 None:intergenic
TTGATGAGGATTTACAAGCA+AGG 0.628964 3.2:+70980839 MS.gene25769:CDS
AAGTTTGTCCAAGAATTGCA+CGG 0.632719 3.2:-70980803 None:intergenic
AATATGCAAGAAAGGATCAG+TGG 0.634670 3.2:+70975367 MS.gene25769:CDS
CATCAATGGTGCAGGATGTG+TGG 0.640468 3.2:+70975493 MS.gene25769:CDS
GTACTAACCATGATAGACAA+AGG 0.643828 3.2:-70975716 None:intergenic
GCACCCTCACAGTTTCCTTG+TGG 0.646427 3.2:+70975466 MS.gene25769:CDS
ATGATGGAACATCTACAAAG+TGG 0.651244 3.2:-70981789 None:intergenic
CCCAAGAGCAGATAGCAGCA+AGG 0.662604 3.2:+70976134 MS.gene25769:CDS
AGCCACGTTGATGAACTGCA+TGG 0.673870 3.2:+70975415 MS.gene25769:CDS
GATATAATAATATTAATAGG+GGG 0.686692 3.2:-70981843 None:intergenic
TCACCACAAGGAAACTGTGA+GGG 0.692337 3.2:-70975469 None:intergenic
GTCACCACAAGGAAACTGTG+AGG 0.716066 3.2:-70975470 None:intergenic
TAAGCTCCAAGAGTAAACCA+AGG 0.717292 3.2:-70975580 None:intergenic
GATTGGGACAATGTTTGCAG+TGG 0.718991 3.2:+70976075 MS.gene25769:CDS
AAATTGATAGCATCTTGGTG+AGG 0.719635 3.2:-70981873 None:intergenic
AACCATGCAGTTCATCAACG+TGG 0.729957 3.2:-70975417 None:intergenic
ACGGTCAAATCCAATCGACG+AGG 0.761129 3.2:-70980784 None:intergenic
AGTGATGTATGCAATCAATG+TGG 0.766710 3.2:-70981743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr3.2 gene 70974968 70981968 70974968 ID=MS.gene25769
chr3.2 mRNA 70974968 70981968 70974968 ID=MS.gene25769.t1;Parent=MS.gene25769
chr3.2 exon 70974968 70975010 70974968 ID=MS.gene25769.t1.exon1;Parent=MS.gene25769.t1
chr3.2 CDS 70974968 70975010 70974968 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70975210 70975246 70975210 ID=MS.gene25769.t1.exon2;Parent=MS.gene25769.t1
chr3.2 CDS 70975210 70975246 70975210 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70975352 70975730 70975352 ID=MS.gene25769.t1.exon3;Parent=MS.gene25769.t1
chr3.2 CDS 70975352 70975730 70975352 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70975843 70975962 70975843 ID=MS.gene25769.t1.exon4;Parent=MS.gene25769.t1
chr3.2 CDS 70975843 70975962 70975843 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70976064 70976219 70976064 ID=MS.gene25769.t1.exon5;Parent=MS.gene25769.t1
chr3.2 CDS 70976064 70976219 70976064 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70980337 70980627 70980337 ID=MS.gene25769.t1.exon6;Parent=MS.gene25769.t1
chr3.2 CDS 70980337 70980627 70980337 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70980784 70980869 70980784 ID=MS.gene25769.t1.exon7;Parent=MS.gene25769.t1
chr3.2 CDS 70980784 70980869 70980784 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
chr3.2 exon 70981671 70981968 70981671 ID=MS.gene25769.t1.exon8;Parent=MS.gene25769.t1
chr3.2 CDS 70981671 70981968 70981671 ID=cds.MS.gene25769.t1;Parent=MS.gene25769.t1
Gene Sequence

>MS.gene25769

ATGAGTACTGCAGAAATTGCTCGAACAGTAGTGGGTATCATAGGTGGGTCATACTAATATGCATTTTAAGTTTTCAATAAAATTTTTTAACATATGTACTCATTACTTCATGAATATTTTTTCTTTTTCTTGTAATTTACTTTTTGGTTATAATTTCCACCTTATTTTTGTTTTTTTGAAAAAAATAATTTCCACCTTATTGATTTATCACTTTTTGCATTTTTTTCCTCTCTTGACCACAGGAAATGTCATCGCCGGATGCATGTTCTTGTCTCCGGTGTAAGTTTATTTCTCGATCTCTTCCCGCATTTTTCAATTTTAACGTAAAATTAATAATACCAACATTTGTTGTTAATTTTTTTCTTCATGTTCTTAATTATGCAGGCCAACATTTGTTGGAATATGCAAGAAAGGATCAGTGGAACAATACTCACCCGTACCATACCTAGCCACGTTGATGAACTGCATGGTTTGGACTCTCTACGGGTTACCAATGGTGCACCCTCACAGTTTCCTTGTGGTGACCATCAATGGTGCAGGATGTGTGGTTGAGATCATCTATATCACACTCTTTCTCATATATTCTGATCGTAAAAAGAGGCTCAAAGTCTTCCTTGGTTTACTCTTGGAGCTTATTTTCATTTTCCTTCTCTCATTTATTTCATTGACTATGCTTCACACCGTTAACAAACGTTCTGCTGTTGTTGGGACCATATGCATGCTCTTTAATATTGGCATGTATGCTTCACCTTTGTCTATCATGGTTAGTACTTAATATATATATCATGTTTAATTTTTTATTTAAGATAAAATTGGTTAATATGGATTGTTGAATTGGCTTAATCATATGTGATCTTAATAATCTATGGTTGCAGAAACTAGTGATCAAGACTAAAAGCGTTGAGTTCATGCCGTTTTTCCTATCTTTAGCTTCATTTGGAAACGGTGTTTCTTGGACCATTTATGCGCTCATCCCTTTTGACCCATTCATTGCGGTAAGGAAACAAATTATAATACCATGCTTAATTCTTTGCTTAAAATTATTAAGTGTAAGTGTTAGACTAATATTGTACTAAATGGATTATATCTCAATCAGATACCAAATGGGATTGGGACAATGTTTGCAGTGGTACAATTGATTCTATATGCATCATATTACAAGTCAACCCAAGAGCAGATAGCAGCAAGGAAGAATAATGGAAAAGGAGAGATGAATCTGTCAGAAGTGGTAGTTGGCATGAGTAACGCTACTGTCCAAGACCACCCCAGCAACAACAACAAAAAGATAACTGCTATTGATCATTCTTCTCCAAGTGTCAAATGACTATTAATGGCACTCATGCATCCTCTTCCTCTGCCCAACCCATTGAGTCATTAATTAATTATGATCTTATAGTTTTTGGATTGATTCTTGTAATCTTATTTCTATTTCCAGCTTAATTTTCAGTTGTTAGTTAGTTACCCTTGTTAGAGACCAACACATGAATGTATGTGTTGTTTTGTTACTCTTTGCCCTTTTATTTCTAGTCTATGTCACCAATTATTAGTCCCATCATATTTTTCAATAAAATTCCATTATGGTTGAGTTCTATTTTTCTTCTTTAATTCAAACCCTTCTCTCATTCTTTCTTAAATATTATTATTTTTAAATACAAAAGAGAAGTGTGACACAACACTTAATGGGGTTTTCCAAAATTTGCAATAGTACATAAAAATATAAAGGCTTGGGAAGGAAGCAAAGTGTGACACAAGTCATAATATCCTTATCATCTTAGCCTTACTTAACTGGGTAACATTTTGTTTGATGAAGTAATTAATAAAAAAAATTATACAACAGTTTACACCTATGGTTTTGATTTTGAACGAATTAGCAACTCCCTAACAAAAGCGCAACACAAAATTTTAAAGGGAAATGTTAGGACACTTGTTAACATTTTCTTAATAATATTTTAGGGTGAATTACACACACCTTACTTAAAGTCTCTTTAAATAACTCAAAGATATGTTCTAGTGTTTTACTCGACATTAACATCCCTTGTTTATTTCTTCATTGGACACTCATCCCTCTTGAAGGATAACATGTTATAGTTTTATTAAGACAGTCATAGTTGGACATTAGCATATCTTATTCATTTGAATTTTCCATTACATTACATCATTTGCGAATCTTTACTTGAAATATCATCTTTAGAAGCACCCATAATCTAAGATTCCTTATACAATTTACTTAAACATAATAACCACTAACTGGGGGCTCGGGTTAACAAGACCCATATTATTAATAGATAGATAGTAAATATATTTGAAGCACAATAATAACTGTAAACTCAATGAGCATTGAAATAAGCCATCGTATAGGATCATAAACGACTTGTTTAGCATTGATAGCCGCAATGAAATCTACATTATCCTTCAACAACACCACTAGCTTGTTAGAATCATTATCCTTGAGGTCATTAAGCAATAGATTCACATCTTGCACATCAGATAACATATCTTGCCCTCCAACACCTAGAGAAAGAGAGAATTCGGTAAGGATTTTGGTAATGTCATAAGTTGGAGGAGTTTGATGTCCATAGTGCAGTAGATTTTGTGCTTGATGAACATAATCATACTTTGCGATTGTTCCGATTCTTGACACTACTCATTTTATAATACAAAAGTCAATAAAAAAAATTATTAGTCCTAATTAGAAATGCATAAAAATGATATTGAGATTAATTTCTGTACAGTGATCATATAAATTTTTGATACATGCATCCAATTAAATTATACCATAATGAGACGTAGTTGTATGTATGTATAAAATTGTATTACACATATTGTACATACAAATTAAATCCAATGATATTTAGTCGCAGTAAGCAAACACAGTTAAAAATATAAGTGTTAGTATACTTACTTTGAGAGAAATGGATCAAATTCTTATTGTGGTACATGATCAAGATAAACATCCATTCTAGAAGAATTTAAGCAACAATTCGGACCTATAAAATTTTAAGATAGGGAACACAAAAATAAAACCATTAATTGTGGTAATCTTTTTGATATATAAAATTTACTAATCATTCCATCAATCAATAACATATAAAGTACCTGTAAACAATGCTAAATGGTTTGTGAGGTCGAGGTTTAGAGTGTTACATATGTCATTCACAAATTTTGTTGCAACATACATGCCAATCATAAAAACATGTGATATTATTACTACAATAGTTTTTTAGTTTTACATTTTTATTTTGCACTAAAACATTTTAGCAAAGATATAGCAAAAGTAGATAAAAAGATTATTTATTCTCTTACACGTTAGGAATGAATTGATAAAGGACCGGTCAATATACTTCCTGTTATATTAAAAAAAGAAAAACATTTTCATAATTGCATTCAATAAATATTCAATACATATTACCCCAAAATTATAGTTAAATAGAGTGTTATTTTTTTCGTGTGTCTCACATCAGCTTAAAAGAGGCCAACAACAAGACTTATTTCCTTTGAAGGATTTAGATTCATATAAATAATTGGACTAAATAATGCAGCTGATCTCAATGTATTCAAAAGCTTCCCTTGAGGCAAAGCAACAAAGCCATCAAAGTTCCCTGAAAAACCTATAGCATTGTTACACACTAAAAACATAAAAATAATAATAATAATCAATTAGGAGTGAACTAACCTGAGAATGACCTTCATAGTGGATTTTTTACCGGTATGATTGTAAACATATTGGACGGAAGCATGAAGATCATAATTAGCCAATTCATCCCATGATCAATCCCAATGCCAATTCATCCCATGATCAATCCCAATAACCCTATATACACATGATATAAATCAATAATTAGGTATAATTTTTTTATCAAAATGTTAAATTCTAAAAAACTTTTTTAACCGGTATGGTTGTAAAAAGATATTATCACTACTCTTAACCTTAGTTTAGCTAAAAGATCACTGGTCGATTTTTCTTCACAAATAATACGACGTAGAGTCATAACATCTTGTAAAAGCAATTTCACATGCTTTTTTTTTGTGGGTAAATTTGGTATTTTCCGCGAGTAAATGTGCAAACTAATCATCCGAGTCTTATATCTAAAAGGAAATTTGGTATTTTCCGCGAGTAAATGTGCAAACTAATCATCCGAGTCTTATATCTAAAAGGAAAAATTTAAATGTGTTGCATACTCAAGTATAAGTTCGAGTGCAAAGTCTTAAAGATCCGTCCCAATCCAAGGGTTTCTCAATCATTTTTCTCCCAAATTGATTAATCAATGAAACATTACATAAAGGGGTGTGCCACAACCTTTTAGGGAGGTTTTATTCCTTTTCGAATTCACGAAACTTCAATTTTGCGAAGATGATCTCATTGGAACAATTTGATTGAGTTGAGCAGTTGTAGCAGTAGTAATAACATATGCACTTCATTAATTAATCAATTTTTTTTACAAAAAGTTAGCACTAGGAACGAAGTAGAGAGAATGCAACCCAGATTTTTGGCCTACGAGATTACAAACAAGAGAACGGGCTTACGATGGTTGACGTGAGGCTATATCCTCATAGTGGAGTGGAGGATCAATGGATTATGGCCTTGTCCCATCATATGAAAAAGATAGAATATGTACCACTGCCACTTTATTAATTAACGATGCTAATTAATTGCTATACAATACCCCTCTCAATCAATCACTAATTTTAATTATTTTATTTTATTTTTAAATTTATCGGCAAAACTCACACATTAAAAAAATTAGGGTTCGAACCCACGATCCACCTAGAGCTATCAATTTACGCAACCCTACAAGTTTGTTCTCAATTCATGAAGCCCTTGACCCAGACCCACAAAAATAAACTAACATAACTAGCTAAGGCAAAATAATGTTCTTTCAACGTGGAGTCATAATTAAAGGACTTAGCAAGAGGCTTAACGTGTGTTTGGTTTTGCAATACACAAAAGTACATTTGTACGCTTTCCACTACATTTTTGCTGTGATTTCCAAAAGCTTCAAATACTAGTTTCTACGCTAACGTGGTTTTTTGTCGTGATTTTCATCAAATAAACACGCACTTAAATGAGTCATAAAAATTTGAGGCACATAAATATATTCCATATTTTGAATGTCTATTCAGTCTTTTATGGAATAAACAAATTTAATCAATTTAACAAATAACAAATATAAATATTCGAACACACAAGTTTACTATACTATATATATGATGTTTCTGTCTCTTTTGGGAAGTTGGAGCAAAACTATTTGTCCTGTTAACCAAAGAAACGCGACACTGTTTGGTAAGCATATGCATGCCTCAACTATAAAGTTTCATTCATATATCCAAATATATTGGTCTTGCTCTTATAACTTGTATTTATATATGAGGCAGTGGCAAAAGGAATAATAATTATGAATGTAAAGAAATATGATGTGATGATGAGTAGTGTTCCACAAATTTCAAGTTCTCCTCCTACTCTTCCACATATGTATTCAGAAGAACTTCAACTTAAGCTTTACCAAGCTTTCATATTCTCAATTCCTATACTTTTTTCCATTATTCTCTTTCTCCTTTTTTACTTGTTCTACCTCAAGAGAAGAGCTTCTTCTTTCTCTCCACACTTACTTCCAAGGATCAATATTCCTCCAACTACCTATCGTTATTATTCATCTTCCTCAGTAAGTTCTTTCATTATTACTTTTCATTTGGTTTATTTAGTTTCTAATAATACCAAAGTGGAAATATTTGCATGTTAGGTTTCTTTCTTGCTTAGTTATTTCTTTGCACCATATAAATTAATTCAATCATCTTATATGGTTTTAATAATCTCATAGCCTCGTCGATTGGATTTGACCGTGCAATTCTTGGACAAACTTCCTAGAGTTTTGTTTGATGAGGATTTACAAGCAAGGGATTCACTGTAAGTTTCTTTTTTCATTTTGGCTATGTTCATTTGTGTGTCTTCACATGTTCTTTTTGTTTGAATGTTTCTCTGGATTAAAGAGTTTTGTTTGAATTTTGTTTGAACTTACTATGCTTTTATCTTTATCCATTCAGAATATTTTCTGTAGATATAGCTTTGTAAATTGGATGTACTACATAATATTTTTGAGTTGTTATAATTTCATAAGTTCTTGGTTTGTCTTAAAAATTATACATTCAACGAATGTTTGCTCTTTTTGACGAAACGAATGTTGTTCTTGAAGCTGAAAAACTGTTTAGAGAATCTTCAATTCATGAATTACTGGTTAGAATATATTTAATGGCATCCACTATTTTATTTCTTTTTTTAAAAAAAAAAAAAAAAAAGGTGCTACATGAAAAGAAAGGTAGTAAAAAAGATAACTAGAATATAACTAATGATTTTGCTTTTCTTTTGACATTAGATAAAATAACGGATACTGTATGTTGCACATGTGACCCAAGTTGATAAGAATCAAAATTAAGCAAACAAAATTAATATGATAGAACTTCATTTATTTTTCAAAAAAAAATATTCAATAAAACCAAGCAAACAAAATTTAAGGCCTAAAGTCTTTTTCGGTTTGGGACACATATAGCACTTTGGAAGGTCTAACTAACTTGGAATCCACATGATGGGCCCTTTTATATGGTTTGAAAAATTCCAATATTCAATCTTTGACTTCTATTGATTTGATATGATATACTATATGATTGGTGGGTTATAAATATGAAGCTAATCAATAAAATGTTGAAACAGATGTTGTGTTTGTTTGGGAGAATTTGAGGTGAAGGAAGAGTTGCTACAGATTCCATATTGCAAACATGTGTTCCACATTGATTGCATACATCACTGGCTACAATCAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTATCACAAAATTCCTTAATCCTGCACCCCCTATTAATATTATTATATCAGACCCACCTCACCAAGATGCTATCAATTTGGATTCTCCATTACCAAATTCATCATTGCCAGATCAAGCTGGTGCTTCCTCAAATATCATGTCAAGGGAATGA

Protein sequence

>MS.gene25769.t1

MSTAEIARTVVGIIGNVIAGCMFLSPVPTFVGICKKGSVEQYSPVPYLATLMNCMVWTLYGLPMVHPHSFLVVTINGAGCVVEIIYITLFLIYSDRKKRLKVFLGLLLELIFIFLLSFISLTMLHTVNKRSAVVGTICMLFNIGMYASPLSIMKLVIKTKSVEFMPFFLSLASFGNGVSWTIYALIPFDPFIAIPNGIGTMFAVVQLILYASYYKSTQEQIAARKNNGKGEMNLSEVVVGMSNATAVAKGIIIMNVKKYDVMMSSVPQISSSPPTLPHMYSEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINIPPTTYRYYSSSSPRRLDLTVQFLDKLPRVLFDEDLQARDSLCCVCLGEFEVKEELLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTITKFLNPAPPINIIISDPPHQDAINLDSPLPNSSLPDQAGASSNIMSRE