Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044269.t1 | XP_003601464.1 | 96.6 | 268 | 4 | 1 | 1 | 268 | 1 | 263 | 1.90E-135 | 491.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044269.t1 | Q8LBF7 | 57.0 | 251 | 105 | 3 | 6 | 254 | 8 | 257 | 2.8e-71 | 270.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044269.t1 | G7J818 | 96.6 | 268 | 4 | 1 | 1 | 268 | 1 | 263 | 1.4e-135 | 491.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044269.t1 | MTR_3g080990 | 96.642 | 268 | 4 | 1 | 1 | 268 | 1 | 263 | 0.0 | 522 |
| MS.gene044269.t1 | MTR_8g099730 | 69.421 | 242 | 73 | 1 | 2 | 243 | 12 | 252 | 1.23e-125 | 358 |
| MS.gene044269.t1 | MTR_8g099730 | 69.312 | 189 | 57 | 1 | 55 | 243 | 1 | 188 | 3.83e-94 | 275 |
| MS.gene044269.t1 | MTR_6g007633 | 53.275 | 229 | 106 | 1 | 1 | 228 | 1 | 229 | 2.75e-82 | 247 |
| MS.gene044269.t1 | MTR_6g007637 | 54.460 | 213 | 96 | 1 | 3 | 214 | 4 | 216 | 1.93e-78 | 238 |
| MS.gene044269.t1 | MTR_6g007623 | 51.598 | 219 | 105 | 1 | 8 | 225 | 5 | 223 | 2.01e-72 | 222 |
| MS.gene044269.t1 | MTR_4g106990 | 48.469 | 196 | 101 | 0 | 28 | 223 | 35 | 230 | 3.90e-64 | 201 |
| MS.gene044269.t1 | MTR_1g029380 | 44.398 | 241 | 120 | 4 | 5 | 233 | 2 | 240 | 2.47e-58 | 186 |
| MS.gene044269.t1 | MTR_8g042490 | 42.009 | 219 | 126 | 1 | 2 | 220 | 8 | 225 | 3.12e-56 | 181 |
| MS.gene044269.t1 | MTR_3g089125 | 43.556 | 225 | 126 | 1 | 5 | 229 | 2 | 225 | 1.02e-55 | 179 |
| MS.gene044269.t1 | MTR_6g007610 | 43.777 | 233 | 113 | 4 | 1 | 220 | 1 | 228 | 2.62e-53 | 173 |
| MS.gene044269.t1 | MTR_2g073190 | 40.000 | 225 | 133 | 2 | 1 | 225 | 7 | 229 | 2.96e-49 | 172 |
| MS.gene044269.t1 | MTR_2g436310 | 39.754 | 244 | 138 | 3 | 11 | 253 | 8 | 243 | 8.26e-49 | 162 |
| MS.gene044269.t1 | MTR_5g067530 | 41.935 | 217 | 116 | 4 | 10 | 222 | 12 | 222 | 2.45e-47 | 159 |
| MS.gene044269.t1 | MTR_8g096320 | 41.395 | 215 | 125 | 1 | 3 | 217 | 4 | 217 | 2.68e-47 | 158 |
| MS.gene044269.t1 | MTR_1g028460 | 39.720 | 214 | 127 | 1 | 4 | 215 | 2 | 215 | 2.95e-45 | 153 |
| MS.gene044269.t1 | MTR_3g090940 | 34.177 | 237 | 154 | 1 | 4 | 238 | 2 | 238 | 1.40e-44 | 151 |
| MS.gene044269.t1 | MTR_3g090950 | 35.043 | 234 | 148 | 3 | 8 | 238 | 6 | 238 | 2.42e-44 | 150 |
| MS.gene044269.t1 | MTR_3g098910 | 34.274 | 248 | 153 | 5 | 12 | 257 | 13 | 252 | 5.57e-44 | 151 |
| MS.gene044269.t1 | MTR_8g096310 | 35.124 | 242 | 142 | 5 | 10 | 243 | 11 | 245 | 8.31e-44 | 150 |
| MS.gene044269.t1 | MTR_2g007890 | 35.772 | 246 | 147 | 5 | 12 | 256 | 16 | 251 | 3.24e-42 | 146 |
| MS.gene044269.t1 | MTR_7g007490 | 34.298 | 242 | 148 | 3 | 10 | 251 | 12 | 242 | 2.17e-41 | 143 |
| MS.gene044269.t1 | MTR_5g092600 | 38.278 | 209 | 126 | 2 | 23 | 231 | 24 | 229 | 6.85e-41 | 141 |
| MS.gene044269.t1 | MTR_3g098930 | 40.513 | 195 | 106 | 3 | 4 | 194 | 6 | 194 | 4.81e-37 | 130 |
| MS.gene044269.t1 | MTR_7g405730 | 39.706 | 204 | 117 | 3 | 12 | 213 | 13 | 212 | 1.52e-32 | 120 |
| MS.gene044269.t1 | MTR_7g405710 | 38.605 | 215 | 126 | 4 | 12 | 224 | 13 | 223 | 3.15e-32 | 120 |
| MS.gene044269.t1 | MTR_8g096320 | 39.877 | 163 | 97 | 1 | 55 | 217 | 1 | 162 | 3.26e-31 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044269.t1 | AT4G10850 | 57.430 | 249 | 103 | 3 | 8 | 254 | 10 | 257 | 1.07e-97 | 287 |
| MS.gene044269.t1 | AT1G66770 | 51.737 | 259 | 112 | 4 | 8 | 260 | 10 | 261 | 1.21e-89 | 266 |
| MS.gene044269.t1 | AT5G62850 | 48.523 | 237 | 117 | 1 | 1 | 232 | 1 | 237 | 5.27e-84 | 251 |
| MS.gene044269.t1 | AT3G28007 | 52.968 | 219 | 103 | 0 | 1 | 219 | 1 | 219 | 2.39e-72 | 222 |
| MS.gene044269.t1 | AT5G62850 | 50.515 | 194 | 96 | 0 | 1 | 194 | 1 | 194 | 1.65e-71 | 219 |
| MS.gene044269.t1 | AT5G40260 | 48.214 | 224 | 111 | 4 | 1 | 220 | 1 | 223 | 4.32e-61 | 193 |
| MS.gene044269.t1 | AT1G21460 | 46.154 | 234 | 122 | 4 | 5 | 236 | 2 | 233 | 9.84e-60 | 190 |
| MS.gene044269.t1 | AT4G15920 | 42.291 | 227 | 124 | 3 | 11 | 236 | 8 | 228 | 7.07e-52 | 169 |
| MS.gene044269.t1 | AT5G40260 | 48.677 | 189 | 93 | 3 | 1 | 186 | 1 | 188 | 1.39e-50 | 165 |
| MS.gene044269.t1 | AT5G50800 | 38.314 | 261 | 149 | 6 | 10 | 261 | 11 | 268 | 2.46e-50 | 167 |
| MS.gene044269.t1 | AT4G25010 | 36.965 | 257 | 153 | 5 | 3 | 253 | 4 | 257 | 6.85e-50 | 166 |
| MS.gene044269.t1 | AT1G21460 | 47.644 | 191 | 97 | 3 | 5 | 194 | 2 | 190 | 1.12e-49 | 162 |
| MS.gene044269.t1 | AT3G16690 | 43.541 | 209 | 114 | 3 | 11 | 218 | 8 | 213 | 1.44e-49 | 163 |
| MS.gene044269.t1 | AT3G16690 | 43.541 | 209 | 114 | 3 | 11 | 218 | 43 | 248 | 2.24e-49 | 164 |
| MS.gene044269.t1 | AT3G14770 | 36.986 | 219 | 137 | 1 | 2 | 220 | 8 | 225 | 2.33e-46 | 155 |
| MS.gene044269.t1 | AT5G13170 | 37.295 | 244 | 144 | 4 | 10 | 248 | 13 | 252 | 2.01e-45 | 154 |
| MS.gene044269.t1 | AT2G39060 | 37.168 | 226 | 139 | 2 | 12 | 237 | 13 | 235 | 2.42e-45 | 153 |
| MS.gene044269.t1 | AT5G53190 | 35.039 | 254 | 158 | 2 | 8 | 254 | 6 | 259 | 2.43e-45 | 153 |
| MS.gene044269.t1 | AT5G23660 | 38.462 | 234 | 139 | 3 | 10 | 240 | 13 | 244 | 2.60e-45 | 154 |
| MS.gene044269.t1 | AT5G50790 | 40.758 | 211 | 115 | 5 | 9 | 215 | 10 | 214 | 5.04e-43 | 148 |
| MS.gene044269.t1 | AT3G48740 | 36.752 | 234 | 143 | 3 | 10 | 240 | 13 | 244 | 1.16e-40 | 142 |
| MS.gene044269.t1 | AT3G16690 | 42.958 | 142 | 78 | 2 | 11 | 151 | 8 | 147 | 3.09e-26 | 102 |
Find 64 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGGAAACGGTGTTTCT+TGG | 0.259955 | 3.3:+68602759 | MS.gene044269:CDS |
| ATATGCATGCTCTTTAATAT+TGG | 0.289240 | 3.3:+68602536 | MS.gene044269:CDS |
| TCCTTGCTGCTATCTGCTCT+TGG | 0.294814 | 3.3:-68602977 | None:intergenic |
| TTCCTATCTTTAGCTTCATT+TGG | 0.307672 | 3.3:+68602743 | MS.gene044269:CDS |
| TGTTGCTGCTGGGGTGGTCT+TGG | 0.308486 | 3.3:-68603064 | None:intergenic |
| AAAAGGGATGAGCGCATAAA+TGG | 0.341443 | 3.3:-68602783 | None:intergenic |
| TGCTTCACCTTTGTCTATCA+TGG | 0.349245 | 3.3:+68602565 | MS.gene044269:CDS |
| AGTCTTCCTTGGTTTACTCT+TGG | 0.378667 | 3.3:+68602430 | MS.gene044269:CDS |
| CCTTGCTGCTATCTGCTCTT+GGG | 0.380467 | 3.3:-68602976 | None:intergenic |
| AACAGCAGAACGTTTGTTAA+CGG | 0.401198 | 3.3:-68602504 | None:intergenic |
| AACATTGTCCCAATCCCATT+TGG | 0.407143 | 3.3:-68602909 | None:intergenic |
| GCATTCCTTACCGCAATGAA+TGG | 0.418887 | 3.3:-68602809 | None:intergenic |
| CGTTGATGAACTGCATGGTT+TGG | 0.424939 | 3.3:+68602276 | MS.gene044269:CDS |
| TATCTCAATCAGATACCAAA+TGG | 0.427186 | 3.3:+68602894 | MS.gene044269:intron |
| AACAAACGTTCTGCTGTTGT+TGG | 0.429590 | 3.3:+68602509 | MS.gene044269:CDS |
| AAGAGGCTCAAAGTCTTCCT+TGG | 0.429746 | 3.3:+68602419 | MS.gene044269:CDS |
| ATAGCAGCAAGGAAGAATAA+TGG | 0.431178 | 3.3:+68602987 | MS.gene044269:CDS |
| TTTGTTGGAATATGCAAGAA+AGG | 0.432088 | 3.3:+68602215 | MS.gene044269:CDS |
| TTATACAGGCCAACATTTGT+TGG | 0.432203 | 3.3:+68602200 | MS.gene044269:intron |
| CACACATCCTGCACCATTGA+TGG | 0.437454 | 3.3:-68602348 | None:intergenic |
| CGAACAGTAGTGGGTATCAT+AGG | 0.440064 | 3.3:+68601847 | MS.gene044269:CDS |
| TGCATGGTTTGGACTCTCTA+CGG | 0.441220 | 3.3:+68602287 | MS.gene044269:CDS |
| ACAAACGTTCTGCTGTTGTT+GGG | 0.444778 | 3.3:+68602510 | MS.gene044269:CDS |
| TTCCTTGTGGTGACCATCAA+TGG | 0.447143 | 3.3:+68602335 | MS.gene044269:CDS |
| ACCGCAATGAATGGGTCAAA+AGG | 0.452161 | 3.3:-68602800 | None:intergenic |
| AATCAGATACCAAATGGGAT+TGG | 0.454981 | 3.3:+68602900 | MS.gene044269:intron |
| ATCAGATACCAAATGGGATT+GGG | 0.459053 | 3.3:+68602901 | MS.gene044269:intron |
| AATATTAAAGAGCATGCATA+TGG | 0.469160 | 3.3:-68602534 | None:intergenic |
| TTCCAAATGAAGCTAAAGAT+AGG | 0.471616 | 3.3:-68602745 | None:intergenic |
| TTGCATATTCCAACAAATGT+TGG | 0.471666 | 3.3:-68602209 | None:intergenic |
| GCAAGGAAGAATAATGGAAA+AGG | 0.488542 | 3.3:+68602993 | MS.gene044269:CDS |
| TCTTTAGCTTCATTTGGAAA+CGG | 0.490245 | 3.3:+68602749 | MS.gene044269:CDS |
| AGAAATTGCTCGAACAGTAG+TGG | 0.495158 | 3.3:+68601837 | MS.gene044269:CDS |
| ATTAATAGTCATTTGACACT+TGG | 0.505938 | 3.3:-68603119 | None:intergenic |
| GCATGGTTTGGACTCTCTAC+GGG | 0.509664 | 3.3:+68602288 | MS.gene044269:CDS |
| AAACTGTGAGGGTGCACCAT+TGG | 0.523843 | 3.3:-68602314 | None:intergenic |
| CAACGTGGCTAGGTATGGTA+CGG | 0.525635 | 3.3:-68602258 | None:intergenic |
| TTCATCAACGTGGCTAGGTA+TGG | 0.527477 | 3.3:-68602263 | None:intergenic |
| CCGCAATGAATGGGTCAAAA+GGG | 0.533348 | 3.3:-68602799 | None:intergenic |
| ATCTCAATCAGATACCAAAT+GGG | 0.541436 | 3.3:+68602895 | MS.gene044269:intron |
| CATTCCTTACCGCAATGAAT+GGG | 0.542059 | 3.3:-68602808 | None:intergenic |
| GACTCTCTACGGGTTACCAA+TGG | 0.543382 | 3.3:+68602298 | MS.gene044269:CDS |
| AATCTGTCAGAAGTGGTAGT+TGG | 0.565227 | 3.3:+68603023 | MS.gene044269:CDS |
| GTGGTGACCATCAATGGTGC+AGG | 0.573604 | 3.3:+68602341 | MS.gene044269:CDS |
| TGGAGACAAGAACATGCATC+CGG | 0.575505 | 3.3:-68602075 | None:intergenic |
| GAAATTGCTCGAACAGTAGT+GGG | 0.576969 | 3.3:+68601838 | MS.gene044269:CDS |
| TCAATGAAATAAATGAGAGA+AGG | 0.580735 | 3.3:-68602469 | None:intergenic |
| ACTTCAGGAAATGTCATCGC+CGG | 0.582179 | 3.3:+68602056 | MS.gene044269:intron |
| AACGTGGCTAGGTATGGTAC+GGG | 0.585953 | 3.3:-68602257 | None:intergenic |
| GAAGAATAATGGAAAAGGAG+AGG | 0.598039 | 3.3:+68602998 | MS.gene044269:CDS |
| CACCATTGATGGTCACCACA+AGG | 0.603803 | 3.3:-68602337 | None:intergenic |
| AGAGGTGAATCTGTCAGAAG+TGG | 0.607458 | 3.3:+68603016 | MS.gene044269:CDS |
| TGCAGTTCATCAACGTGGCT+AGG | 0.615839 | 3.3:-68602268 | None:intergenic |
| AATATGCAAGAAAGGATCAG+TGG | 0.634670 | 3.3:+68602223 | MS.gene044269:CDS |
| CATCAATGGTGCAGGATGTG+TGG | 0.640468 | 3.3:+68602349 | MS.gene044269:CDS |
| GTACTAACCATGATAGACAA+AGG | 0.643828 | 3.3:-68602572 | None:intergenic |
| GCACCCTCACAGTTTCCTTG+TGG | 0.646427 | 3.3:+68602322 | MS.gene044269:CDS |
| CCCAAGAGCAGATAGCAGCA+AGG | 0.662604 | 3.3:+68602976 | MS.gene044269:CDS |
| AGCCACGTTGATGAACTGCA+TGG | 0.673870 | 3.3:+68602271 | MS.gene044269:CDS |
| TCACCACAAGGAAACTGTGA+GGG | 0.692337 | 3.3:-68602325 | None:intergenic |
| GTCACCACAAGGAAACTGTG+AGG | 0.716066 | 3.3:-68602326 | None:intergenic |
| TAAGCTCCAAGAGTAAACCA+AGG | 0.717292 | 3.3:-68602436 | None:intergenic |
| GATTGGGACAATGTTTGCAG+TGG | 0.718991 | 3.3:+68602917 | MS.gene044269:CDS |
| AACCATGCAGTTCATCAACG+TGG | 0.729957 | 3.3:-68602273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAAATATAAGG+TGG | - | chr3.3:68601980-68601999 | None:intergenic | 15.0% |
| !! | GTTAAAATTGAAAAATGTAA+GGG | - | chr3.3:68602126-68602145 | None:intergenic | 15.0% |
| !! | TAAGATAAAATTGGTTAATA+TGG | + | chr3.3:68602628-68602647 | MS.gene044269:intron | 15.0% |
| !!! | TGTTAGTATTGTTAATTTTT+AGG | - | chr3.3:68602148-68602167 | None:intergenic | 15.0% |
| !! | CAAAAAGTGATAAATCAATA+AGG | - | chr3.3:68602019-68602038 | None:intergenic | 20.0% |
| !! | GGTTAAAATTGAAAAATGTA+AGG | - | chr3.3:68602127-68602146 | None:intergenic | 20.0% |
| !! | TAGACTAATATTGTACTAAA+TGG | + | chr3.3:68602867-68602886 | MS.gene044269:intron | 20.0% |
| !! | TATGTGATCTTAATAATCTA+TGG | + | chr3.3:68602672-68602691 | MS.gene044269:intron | 20.0% |
| ! | AAAGTGATAAATCAATAAGG+TGG | - | chr3.3:68602016-68602035 | None:intergenic | 25.0% |
| ! | ATATGCATGCTCTTTAATAT+TGG | + | chr3.3:68602536-68602555 | MS.gene044269:CDS | 25.0% |
| ! | ATCTAGAAATAAACTTACAC+TGG | - | chr3.3:68602098-68602117 | None:intergenic | 25.0% |
| ! | CTTCATGTTCTTAATTATAC+AGG | + | chr3.3:68602186-68602205 | MS.gene044269:intron | 25.0% |
| ! | TCAATGAAATAAATGAGAGA+AGG | - | chr3.3:68602472-68602491 | None:intergenic | 25.0% |
| !! | AATATTAAAGAGCATGCATA+TGG | - | chr3.3:68602537-68602556 | None:intergenic | 25.0% |
| !! | GTTAATATGGATTGTTGAAT+TGG | + | chr3.3:68602641-68602660 | MS.gene044269:intron | 25.0% |
| ATCTCAATCAGATACCAAAT+GGG | + | chr3.3:68602895-68602914 | MS.gene044269:intron | 30.0% | |
| GAAGCTAAAGATAGGAAAAA+CGG | - | chr3.3:68602740-68602759 | None:intergenic | 30.0% | |
| TATATTCTGACCGTAAAAAG+AGG | + | chr3.3:68602402-68602421 | MS.gene044269:CDS | 30.0% | |
| TATCTCAATCAGATACCAAA+TGG | + | chr3.3:68602894-68602913 | MS.gene044269:intron | 30.0% | |
| TTCCAAATGAAGCTAAAGAT+AGG | - | chr3.3:68602748-68602767 | None:intergenic | 30.0% | |
| TTGCATATTCCAACAAATGT+TGG | - | chr3.3:68602212-68602231 | None:intergenic | 30.0% | |
| TTTGTTGGAATATGCAAGAA+AGG | + | chr3.3:68602215-68602234 | MS.gene044269:CDS | 30.0% | |
| ! | TCTTTAGCTTCATTTGGAAA+CGG | + | chr3.3:68602749-68602768 | MS.gene044269:CDS | 30.0% |
| ! | TTCCTATCTTTAGCTTCATT+TGG | + | chr3.3:68602743-68602762 | MS.gene044269:CDS | 30.0% |
| AATATGCAAGAAAGGATCAG+TGG | + | chr3.3:68602223-68602242 | MS.gene044269:CDS | 35.0% | |
| AATCAGATACCAAATGGGAT+TGG | + | chr3.3:68602900-68602919 | MS.gene044269:intron | 35.0% | |
| ACATATGTACTCGTTACTTC+AGG | + | chr3.3:68601909-68601928 | MS.gene044269:intron | 35.0% | |
| ATAGCAGCAAGGAAGAATAA+TGG | + | chr3.3:68602987-68603006 | MS.gene044269:CDS | 35.0% | |
| ATCAGATACCAAATGGGATT+GGG | + | chr3.3:68602901-68602920 | MS.gene044269:intron | 35.0% | |
| GTACTAACCATGATAGACAA+AGG | - | chr3.3:68602575-68602594 | None:intergenic | 35.0% | |
| TGAAGTGAAGAGAGAAAACA+AGG | - | chr3.3:68602042-68602061 | None:intergenic | 35.0% | |
| TTATACAGGCCAACATTTGT+TGG | + | chr3.3:68602200-68602219 | MS.gene044269:intron | 35.0% | |
| ! | AACAGCAGAACGTTTGTTAA+CGG | - | chr3.3:68602507-68602526 | None:intergenic | 35.0% |
| ! | AGACTTTGAGCCTCTTTTTA+CGG | - | chr3.3:68602415-68602434 | None:intergenic | 35.0% |
| ! | GAAGAATAATGGAAAAGGAG+AGG | + | chr3.3:68602998-68603017 | MS.gene044269:CDS | 35.0% |
| ! | GCAAGGAAGAATAATGGAAA+AGG | + | chr3.3:68602993-68603012 | MS.gene044269:CDS | 35.0% |
| ! | TTGTTTTCTCTCTTCACTTC+AGG | + | chr3.3:68602041-68602060 | MS.gene044269:intron | 35.0% |
| !!! | ATCTTTTTGTTGTTGCTGCT+GGG | - | chr3.3:68603077-68603096 | None:intergenic | 35.0% |
| !!! | TATCTTTTTGTTGTTGCTGC+TGG | - | chr3.3:68603078-68603097 | None:intergenic | 35.0% |
| AAAAGGGATGAGCGCATAAA+TGG | - | chr3.3:68602786-68602805 | None:intergenic | 40.0% | |
| AACAAACGTTCTGCTGTTGT+TGG | + | chr3.3:68602509-68602528 | MS.gene044269:CDS | 40.0% | |
| AACATTGTCCCAATCCCATT+TGG | - | chr3.3:68602912-68602931 | None:intergenic | 40.0% | |
| AATCTGTCAGAAGTGGTAGT+TGG | + | chr3.3:68603023-68603042 | MS.gene044269:CDS | 40.0% | |
| ACAAACGTTCTGCTGTTGTT+GGG | + | chr3.3:68602510-68602529 | MS.gene044269:CDS | 40.0% | |
| AGAAATTGCTCGAACAGTAG+TGG | + | chr3.3:68601837-68601856 | MS.gene044269:CDS | 40.0% | |
| AGTCTTCCTTGGTTTACTCT+TGG | + | chr3.3:68602430-68602449 | MS.gene044269:CDS | 40.0% | |
| CATTCCTTACCGCAATGAAT+GGG | - | chr3.3:68602811-68602830 | None:intergenic | 40.0% | |
| CATTTGGAAACGGTGTTTCT+TGG | + | chr3.3:68602759-68602778 | MS.gene044269:CDS | 40.0% | |
| GAAATTGCTCGAACAGTAGT+GGG | + | chr3.3:68601838-68601857 | MS.gene044269:CDS | 40.0% | |
| TAAGCTCCAAGAGTAAACCA+AGG | - | chr3.3:68602439-68602458 | None:intergenic | 40.0% | |
| TGCTTCACCTTTGTCTATCA+TGG | + | chr3.3:68602565-68602584 | MS.gene044269:CDS | 40.0% | |
| !!! | TCTTTTTGTTGTTGCTGCTG+GGG | - | chr3.3:68603076-68603095 | None:intergenic | 40.0% |
| AACCATGCAGTTCATCAACG+TGG | - | chr3.3:68602276-68602295 | None:intergenic | 45.0% | |
| AAGAGGCTCAAAGTCTTCCT+TGG | + | chr3.3:68602419-68602438 | MS.gene044269:CDS | 45.0% | |
| ACCGCAATGAATGGGTCAAA+AGG | - | chr3.3:68602803-68602822 | None:intergenic | 45.0% | |
| ACTTCAGGAAATGTCATCGC+CGG | + | chr3.3:68602056-68602075 | MS.gene044269:intron | 45.0% | |
| AGAGGTGAATCTGTCAGAAG+TGG | + | chr3.3:68603016-68603035 | MS.gene044269:CDS | 45.0% | |
| CCGCAATGAATGGGTCAAAA+GGG | - | chr3.3:68602802-68602821 | None:intergenic | 45.0% | |
| GATTGGGACAATGTTTGCAG+TGG | + | chr3.3:68602917-68602936 | MS.gene044269:CDS | 45.0% | |
| GCATTCCTTACCGCAATGAA+TGG | - | chr3.3:68602812-68602831 | None:intergenic | 45.0% | |
| TCACCACAAGGAAACTGTGA+GGG | - | chr3.3:68602328-68602347 | None:intergenic | 45.0% | |
| TGGAGACAAGAACATGCATC+CGG | - | chr3.3:68602078-68602097 | None:intergenic | 45.0% | |
| TTCATCAACGTGGCTAGGTA+TGG | - | chr3.3:68602266-68602285 | None:intergenic | 45.0% | |
| TTCCTTGTGGTGACCATCAA+TGG | + | chr3.3:68602335-68602354 | MS.gene044269:CDS | 45.0% | |
| TTGACCCATTCATTGCGGTA+AGG | + | chr3.3:68602804-68602823 | MS.gene044269:intron | 45.0% | |
| ! | CCCTTTTGACCCATTCATTG+CGG | + | chr3.3:68602799-68602818 | MS.gene044269:CDS | 45.0% |
| ! | CGTTGATGAACTGCATGGTT+TGG | + | chr3.3:68602276-68602295 | MS.gene044269:CDS | 45.0% |
| ! | TGCATGGTTTGGACTCTCTA+CGG | + | chr3.3:68602287-68602306 | MS.gene044269:CDS | 45.0% |
| !! | ACAGTAGTGGGTATCATAGG+TGG | + | chr3.3:68601850-68601869 | MS.gene044269:intron | 45.0% |
| !! | CAGTAGTGGGTATCATAGGT+GGG | + | chr3.3:68601851-68601870 | MS.gene044269:intron | 45.0% |
| !! | CGAACAGTAGTGGGTATCAT+AGG | + | chr3.3:68601847-68601866 | MS.gene044269:CDS | 45.0% |
| !! | TTAAAAAAAAAACAAATATA+AGG | - | chr3.3:68601983-68602002 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTAAGATAAAAT+TGG | + | chr3.3:68602619-68602638 | MS.gene044269:intron | 5.0% |
| AACGTGGCTAGGTATGGTAC+GGG | - | chr3.3:68602260-68602279 | None:intergenic | 50.0% | |
| CAACGTGGCTAGGTATGGTA+CGG | - | chr3.3:68602261-68602280 | None:intergenic | 50.0% | |
| CACACATCCTGCACCATTGA+TGG | - | chr3.3:68602351-68602370 | None:intergenic | 50.0% | |
| CATCAATGGTGCAGGATGTG+TGG | + | chr3.3:68602349-68602368 | MS.gene044269:CDS | 50.0% | |
| CCTTGCTGCTATCTGCTCTT+GGG | - | chr3.3:68602979-68602998 | None:intergenic | 50.0% | |
| GTCACCACAAGGAAACTGTG+AGG | - | chr3.3:68602329-68602348 | None:intergenic | 50.0% | |
| TCCTTGCTGCTATCTGCTCT+TGG | - | chr3.3:68602980-68602999 | None:intergenic | 50.0% | |
| TGCAGTTCATCAACGTGGCT+AGG | - | chr3.3:68602271-68602290 | None:intergenic | 50.0% | |
| ! | AAACTGTGAGGGTGCACCAT+TGG | - | chr3.3:68602317-68602336 | None:intergenic | 50.0% |
| ! | AGCCACGTTGATGAACTGCA+TGG | + | chr3.3:68602271-68602290 | MS.gene044269:CDS | 50.0% |
| ! | CACCATTGATGGTCACCACA+AGG | - | chr3.3:68602340-68602359 | None:intergenic | 50.0% |
| ! | GACTCTCTACGGGTTACCAA+TGG | + | chr3.3:68602298-68602317 | MS.gene044269:CDS | 50.0% |
| ! | GCATGGTTTGGACTCTCTAC+GGG | + | chr3.3:68602288-68602307 | MS.gene044269:CDS | 50.0% |
| !!! | TTTTGTTGTTGCTGCTGGGG+TGG | - | chr3.3:68603073-68603092 | None:intergenic | 50.0% |
| CCCAAGAGCAGATAGCAGCA+AGG | + | chr3.3:68602976-68602995 | MS.gene044269:CDS | 55.0% | |
| GCACCCTCACAGTTTCCTTG+TGG | + | chr3.3:68602322-68602341 | MS.gene044269:CDS | 55.0% | |
| GTGGTGACCATCAATGGTGC+AGG | + | chr3.3:68602341-68602360 | MS.gene044269:CDS | 55.0% | |
| TGTTGCTGCTGGGGTGGTCT+TGG | - | chr3.3:68603067-68603086 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 68601826 | 68603133 | 68601826 | ID=MS.gene044269 |
| chr3.3 | mRNA | 68601826 | 68603133 | 68601826 | ID=MS.gene044269.t1;Parent=MS.gene044269 |
| chr3.3 | exon | 68601826 | 68601868 | 68601826 | ID=MS.gene044269.t1.exon1;Parent=MS.gene044269.t1 |
| chr3.3 | CDS | 68601826 | 68601868 | 68601826 | ID=cds.MS.gene044269.t1;Parent=MS.gene044269.t1 |
| chr3.3 | exon | 68602063 | 68602099 | 68602063 | ID=MS.gene044269.t1.exon2;Parent=MS.gene044269.t1 |
| chr3.3 | CDS | 68602063 | 68602099 | 68602063 | ID=cds.MS.gene044269.t1;Parent=MS.gene044269.t1 |
| chr3.3 | exon | 68602208 | 68602586 | 68602208 | ID=MS.gene044269.t1.exon3;Parent=MS.gene044269.t1 |
| chr3.3 | CDS | 68602208 | 68602586 | 68602208 | ID=cds.MS.gene044269.t1;Parent=MS.gene044269.t1 |
| chr3.3 | exon | 68602701 | 68602820 | 68602701 | ID=MS.gene044269.t1.exon4;Parent=MS.gene044269.t1 |
| chr3.3 | CDS | 68602701 | 68602820 | 68602701 | ID=cds.MS.gene044269.t1;Parent=MS.gene044269.t1 |
| chr3.3 | exon | 68602906 | 68603133 | 68602906 | ID=MS.gene044269.t1.exon5;Parent=MS.gene044269.t1 |
| chr3.3 | CDS | 68602906 | 68603133 | 68602906 | ID=cds.MS.gene044269.t1;Parent=MS.gene044269.t1 |
| Gene Sequence |
| Protein sequence |