Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79463.t1 | XP_013446956.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 3.90E-130 | 474.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79463.t1 | Q2QR07 | 56.5 | 248 | 101 | 3 | 8 | 249 | 10 | 256 | 7.3e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79463.t1 | A0A072TVU1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 2.8e-130 | 474.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene79463 | 0.827611 | 1.42E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene79463 | 0.817908 | 2.58E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene79463 | 0.811833 | 5.74E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene79463 | 0.80723 | 5.59E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene79463 | 0.810811 | 9.57E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene79463 | 0.800667 | 1.29E-48 | -1.69E-46 |
| MS.gene053813 | MS.gene79463 | 0.821424 | 4.07E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene79463 | 0.840689 | 7.48E-58 | -1.69E-46 |
| MS.gene055911 | MS.gene79463 | 0.849948 | 2.33E-60 | -1.69E-46 |
| MS.gene056511 | MS.gene79463 | 0.808044 | 3.76E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene79463 | 0.80855 | 2.93E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene79463 | 0.800285 | 1.55E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene79463 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene79463 | 0.809425 | 1.90E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene79463 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene79463 | 0.823304 | 1.49E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene79463 | 0.818707 | 1.70E-52 | -1.69E-46 |
| MS.gene058075 | MS.gene79463 | 0.801982 | 6.96E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene79463 | 0.810584 | 1.07E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene79463 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene79463 | 0.805069 | 1.59E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene79463 | 0.832278 | 1.04E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene79463 | 0.807138 | 5.85E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene79463 | 0.811168 | 8.01E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene79463 | 0.82655 | 2.55E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79463 | MS.gene038413 | PPI |
| MS.gene79463 | MS.gene76929 | PPI |
| MS.gene80949 | MS.gene79463 | PPI |
| MS.gene76933 | MS.gene79463 | PPI |
| MS.gene94431 | MS.gene79463 | PPI |
| MS.gene065500 | MS.gene79463 | PPI |
| MS.gene017178 | MS.gene79463 | PPI |
| MS.gene79463 | MS.gene062296 | PPI |
| MS.gene54502 | MS.gene79463 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79463.t1 | MTR_8g096320 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 0.0 | 499 |
| MS.gene79463.t1 | MTR_8g096320 | 99.000 | 200 | 2 | 0 | 56 | 255 | 1 | 200 | 1.94e-140 | 392 |
| MS.gene79463.t1 | MTR_3g098910 | 50.794 | 252 | 117 | 4 | 1 | 246 | 1 | 251 | 4.55e-87 | 261 |
| MS.gene79463.t1 | MTR_3g098930 | 64.550 | 189 | 66 | 1 | 6 | 194 | 7 | 194 | 1.62e-86 | 256 |
| MS.gene79463.t1 | MTR_7g405710 | 57.870 | 216 | 90 | 1 | 1 | 216 | 1 | 215 | 4.75e-83 | 250 |
| MS.gene79463.t1 | MTR_7g007490 | 53.478 | 230 | 106 | 1 | 2 | 231 | 3 | 231 | 5.83e-82 | 246 |
| MS.gene79463.t1 | MTR_5g067530 | 56.604 | 212 | 91 | 1 | 5 | 216 | 6 | 216 | 6.05e-82 | 247 |
| MS.gene79463.t1 | MTR_7g405730 | 56.481 | 216 | 93 | 1 | 1 | 216 | 1 | 215 | 7.75e-81 | 244 |
| MS.gene79463.t1 | MTR_5g092600 | 52.703 | 222 | 103 | 2 | 11 | 232 | 12 | 231 | 6.10e-79 | 238 |
| MS.gene79463.t1 | MTR_8g096310 | 47.479 | 238 | 120 | 4 | 5 | 238 | 4 | 240 | 5.92e-71 | 219 |
| MS.gene79463.t1 | MTR_2g007890 | 49.524 | 210 | 104 | 1 | 1 | 210 | 4 | 211 | 1.48e-67 | 211 |
| MS.gene79463.t1 | MTR_2g436310 | 43.182 | 220 | 124 | 1 | 9 | 228 | 5 | 223 | 3.48e-52 | 170 |
| MS.gene79463.t1 | MTR_3g080990 | 40.930 | 215 | 126 | 1 | 4 | 217 | 3 | 217 | 1.12e-45 | 154 |
| MS.gene79463.t1 | MTR_6g007633 | 43.842 | 203 | 110 | 3 | 11 | 210 | 10 | 211 | 1.76e-45 | 152 |
| MS.gene79463.t1 | MTR_6g007637 | 41.204 | 216 | 123 | 3 | 1 | 213 | 1 | 215 | 4.47e-45 | 152 |
| MS.gene79463.t1 | MTR_8g099730 | 38.235 | 238 | 144 | 3 | 11 | 246 | 20 | 256 | 6.60e-45 | 152 |
| MS.gene79463.t1 | MTR_3g089125 | 37.281 | 228 | 135 | 5 | 11 | 233 | 7 | 231 | 3.62e-44 | 149 |
| MS.gene79463.t1 | MTR_6g007623 | 41.546 | 207 | 115 | 5 | 11 | 213 | 7 | 211 | 2.50e-42 | 144 |
| MS.gene79463.t1 | MTR_8g042490 | 38.164 | 207 | 124 | 3 | 13 | 217 | 18 | 222 | 8.04e-41 | 140 |
| MS.gene79463.t1 | MTR_1g029380 | 35.294 | 221 | 139 | 3 | 10 | 228 | 6 | 224 | 9.49e-40 | 138 |
| MS.gene79463.t1 | MTR_1g028460 | 31.390 | 223 | 150 | 1 | 6 | 225 | 3 | 225 | 2.18e-36 | 129 |
| MS.gene79463.t1 | MTR_2g073190 | 33.803 | 213 | 135 | 4 | 13 | 222 | 18 | 227 | 1.08e-33 | 129 |
| MS.gene79463.t1 | MTR_3g090950 | 30.508 | 236 | 151 | 4 | 13 | 240 | 10 | 240 | 3.77e-33 | 121 |
| MS.gene79463.t1 | MTR_3g090940 | 30.833 | 240 | 159 | 4 | 6 | 240 | 3 | 240 | 2.83e-32 | 119 |
| MS.gene79463.t1 | MTR_4g106990 | 36.649 | 191 | 118 | 2 | 29 | 217 | 35 | 224 | 4.80e-32 | 118 |
| MS.gene79463.t1 | MTR_8g099730 | 35.233 | 193 | 122 | 3 | 56 | 246 | 1 | 192 | 1.47e-28 | 107 |
| MS.gene79463.t1 | MTR_6g007610 | 31.628 | 215 | 128 | 5 | 11 | 211 | 10 | 219 | 5.48e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79463.t1 | AT5G50800 | 57.676 | 241 | 100 | 2 | 1 | 240 | 1 | 240 | 3.55e-94 | 279 |
| MS.gene79463.t1 | AT5G50790 | 53.689 | 244 | 109 | 4 | 1 | 242 | 1 | 242 | 2.34e-91 | 271 |
| MS.gene79463.t1 | AT3G48740 | 54.918 | 244 | 101 | 4 | 4 | 242 | 6 | 245 | 5.49e-88 | 263 |
| MS.gene79463.t1 | AT5G23660 | 54.545 | 242 | 105 | 3 | 4 | 242 | 6 | 245 | 1.27e-87 | 262 |
| MS.gene79463.t1 | AT5G13170 | 55.963 | 218 | 91 | 3 | 9 | 225 | 11 | 224 | 5.30e-85 | 255 |
| MS.gene79463.t1 | AT4G25010 | 52.245 | 245 | 116 | 1 | 1 | 244 | 1 | 245 | 7.74e-85 | 254 |
| MS.gene79463.t1 | AT2G39060 | 49.772 | 219 | 108 | 2 | 9 | 227 | 9 | 225 | 5.36e-75 | 229 |
| MS.gene79463.t1 | AT4G15920 | 42.925 | 212 | 119 | 2 | 9 | 219 | 5 | 215 | 1.26e-53 | 174 |
| MS.gene79463.t1 | AT3G16690 | 41.589 | 214 | 123 | 2 | 9 | 221 | 5 | 217 | 1.67e-53 | 173 |
| MS.gene79463.t1 | AT3G16690 | 41.589 | 214 | 123 | 2 | 9 | 221 | 40 | 252 | 2.41e-53 | 174 |
| MS.gene79463.t1 | AT5G40260 | 40.444 | 225 | 129 | 5 | 10 | 230 | 9 | 232 | 2.53e-46 | 155 |
| MS.gene79463.t1 | AT5G62850 | 39.524 | 210 | 122 | 4 | 11 | 217 | 10 | 217 | 2.66e-45 | 152 |
| MS.gene79463.t1 | AT1G21460 | 36.771 | 223 | 135 | 4 | 11 | 230 | 7 | 226 | 6.48e-42 | 144 |
| MS.gene79463.t1 | AT4G10850 | 37.273 | 220 | 134 | 4 | 11 | 227 | 12 | 230 | 1.13e-41 | 143 |
| MS.gene79463.t1 | AT5G53190 | 34.728 | 239 | 142 | 4 | 13 | 247 | 10 | 238 | 2.98e-41 | 142 |
| MS.gene79463.t1 | AT5G40260 | 42.781 | 187 | 103 | 4 | 10 | 192 | 9 | 195 | 9.59e-40 | 137 |
| MS.gene79463.t1 | AT3G14770 | 35.885 | 209 | 129 | 4 | 11 | 216 | 16 | 222 | 6.63e-38 | 133 |
| MS.gene79463.t1 | AT1G66770 | 34.928 | 209 | 134 | 2 | 11 | 217 | 12 | 220 | 1.36e-37 | 133 |
| MS.gene79463.t1 | AT5G62850 | 38.919 | 185 | 108 | 4 | 11 | 192 | 10 | 192 | 1.22e-36 | 129 |
| MS.gene79463.t1 | AT3G28007 | 36.538 | 208 | 129 | 3 | 13 | 218 | 12 | 218 | 4.00e-34 | 124 |
| MS.gene79463.t1 | AT1G21460 | 37.113 | 194 | 116 | 4 | 11 | 201 | 7 | 197 | 1.53e-33 | 120 |
| MS.gene79463.t1 | AT3G16690 | 37.671 | 146 | 89 | 2 | 9 | 153 | 5 | 149 | 3.45e-25 | 99.0 |
Find 60 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTATACCCTTTGTTTCTT+TGG | 0.184748 | 4.1:+6410676 | None:intergenic |
| CTTCTCTTGCTGAATGTGTT+TGG | 0.204848 | 4.1:-6410515 | MS.gene79463:CDS |
| TGTATACCCTTTGTTTCTTT+GGG | 0.209074 | 4.1:+6410677 | None:intergenic |
| GTTTCTTTGGGGCATAAATT+AGG | 0.220003 | 4.1:+6410689 | None:intergenic |
| AACAATTCCAAAAGTGTTAA+TGG | 0.230115 | 4.1:+6410738 | None:intergenic |
| CTTATCACCATTAACACTTT+TGG | 0.238695 | 4.1:-6410745 | MS.gene79463:CDS |
| GAAATCTGCTGAGGGATTTC+AGG | 0.262581 | 4.1:-6410848 | MS.gene79463:CDS |
| TTCTCTTGCTGAATGTGTTT+GGG | 0.283443 | 4.1:-6410514 | MS.gene79463:CDS |
| TCTTCTATGGCCTTCTCCTC+AGG | 0.284550 | 4.1:-6410160 | MS.gene79463:CDS |
| TTGCTGAATGTGTTTGGGTT+TGG | 0.294795 | 4.1:-6410509 | MS.gene79463:CDS |
| GCTGTTATGTGGTTCTTCTA+TGG | 0.316301 | 4.1:-6410173 | MS.gene79463:CDS |
| ATAATTGATGTTGTGAAGAT+TGG | 0.346357 | 4.1:-6409722 | MS.gene79463:CDS |
| TGGCCATGACTCGTGAATCT+TGG | 0.380436 | 4.1:-6411528 | MS.gene79463:CDS |
| CTCAACTCTTGACCCTTCAT+TGG | 0.382813 | 4.1:+6409755 | None:intergenic |
| GGCACCTCCACCTGCACGAT+TGG | 0.385028 | 4.1:+6409691 | None:intergenic |
| GGCCATGACTCGTGAATCTT+GGG | 0.392828 | 4.1:-6411527 | MS.gene79463:CDS |
| GCACCTCCACCTGCACGATT+GGG | 0.405651 | 4.1:+6409692 | None:intergenic |
| AACACACTTGGATTTGTGTT+CGG | 0.406416 | 4.1:-6409836 | MS.gene79463:CDS |
| GAACCACATAACAGCATTGA+TGG | 0.426987 | 4.1:+6410181 | None:intergenic |
| AACACAAATCCAAGTGTGTT+TGG | 0.437116 | 4.1:+6409839 | None:intergenic |
| CTGAAAAGTGCCACAACATA+AGG | 0.441782 | 4.1:+6410820 | None:intergenic |
| CTTCTATGGCCTTCTCCTCA+GGG | 0.446491 | 4.1:-6410159 | MS.gene79463:CDS |
| GCAAAACGTCTTGCTATCAT+AGG | 0.455733 | 4.1:-6410449 | MS.gene79463:CDS |
| TAACCATCAATGCTGTTATG+TGG | 0.489473 | 4.1:-6410184 | MS.gene79463:CDS |
| GGTGGTAGAGGCACCAATGA+AGG | 0.494736 | 4.1:-6409768 | MS.gene79463:CDS |
| TCAGGCACTTCCTTATGTTG+TGG | 0.494964 | 4.1:-6410830 | MS.gene79463:CDS |
| CATAGTAATCCCTGAGGAGA+AGG | 0.500559 | 4.1:+6410150 | None:intergenic |
| AGGCAACATCATTTCCTTTG+CGG | 0.507976 | 4.1:-6411006 | MS.gene79463:CDS |
| TTCATTGGTGCCTCTACCAC+CGG | 0.508469 | 4.1:+6409770 | None:intergenic |
| AAATGCTACACCGGTGGTAG+AGG | 0.509728 | 4.1:-6409780 | MS.gene79463:CDS |
| CCATGCAGAGCAAAGTCATA+AGG | 0.515167 | 4.1:-6410250 | MS.gene79463:intron |
| GACCCCAATCGTGCAGGTGG+AGG | 0.519554 | 4.1:-6409695 | MS.gene79463:CDS |
| GTATACCCTTTGTTTCTTTG+GGG | 0.522852 | 4.1:+6410678 | None:intergenic |
| AGCCCAAGATTCACGAGTCA+TGG | 0.538849 | 4.1:+6411525 | None:intergenic |
| TCAACTCTCTACCTCTCAAA+GGG | 0.539975 | 4.1:-6410473 | MS.gene79463:CDS |
| TTAAAATCAGACTTTGCTAA+CGG | 0.544654 | 4.1:+6409670 | None:intergenic |
| TTCAAGAAGAAATCTGCTGA+GGG | 0.551711 | 4.1:-6410856 | MS.gene79463:CDS |
| TGTGTTCGGCATAATTCAGA+TGG | 0.552676 | 4.1:-6409822 | MS.gene79463:CDS |
| ATCAACTCTCTACCTCTCAA+AGG | 0.553313 | 4.1:-6410474 | MS.gene79463:CDS |
| GGAAACGACCCCAATCGTGC+AGG | 0.560744 | 4.1:-6409701 | MS.gene79463:CDS |
| TTTATGCCCCAAAGAAACAA+AGG | 0.567569 | 4.1:-6410684 | MS.gene79463:CDS |
| AACGACCCCAATCGTGCAGG+TGG | 0.576027 | 4.1:-6409698 | MS.gene79463:CDS |
| TTATGCCCCAAAGAAACAAA+GGG | 0.578048 | 4.1:-6410683 | MS.gene79463:intron |
| AACGTCTTGCTATCATAGGA+TGG | 0.590309 | 4.1:-6410445 | MS.gene79463:CDS |
| GTGGTAGAGGCACCAATGAA+GGG | 0.591402 | 4.1:-6409767 | MS.gene79463:CDS |
| ATGCAGCTACCAAACACACT+TGG | 0.593312 | 4.1:-6409848 | MS.gene79463:intron |
| CTTCAAGAAGAAATCTGCTG+AGG | 0.593379 | 4.1:-6410857 | MS.gene79463:CDS |
| CACCTCCACCTGCACGATTG+GGG | 0.600426 | 4.1:+6409693 | None:intergenic |
| CAAACACATTCAGCAAGAGA+AGG | 0.625179 | 4.1:+6410516 | None:intergenic |
| GATATATAGAAATGCTACAC+CGG | 0.637638 | 4.1:-6409789 | MS.gene79463:CDS |
| GTAGAGAGTTGATAGAAGCA+TGG | 0.638407 | 4.1:+6410484 | None:intergenic |
| ATACTTACAATGACGAAGAG+AGG | 0.639522 | 4.1:+6410386 | None:intergenic |
| ATACACTTATGTTGAAAACA+AGG | 0.640633 | 4.1:+6410417 | None:intergenic |
| TGGTGAGAGGAACACCGCAA+AGG | 0.662139 | 4.1:+6410992 | None:intergenic |
| GTTCGGCATAATTCAGATGG+TGG | 0.664212 | 4.1:-6409819 | MS.gene79463:CDS |
| TGGTTACTTACAATGGTGAG+AGG | 0.666494 | 4.1:+6410979 | None:intergenic |
| AAGGGTCAAGAGTTGAGTGG+TGG | 0.679444 | 4.1:-6409749 | MS.gene79463:CDS |
| ATATAGAAATGCTACACCGG+TGG | 0.693921 | 4.1:-6409786 | MS.gene79463:CDS |
| ATGAAGGGTCAAGAGTTGAG+TGG | 0.696772 | 4.1:-6409752 | MS.gene79463:CDS |
| CGGCAACATAGTAATCCCTG+AGG | 0.770046 | 4.1:+6410144 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAAATATATATGT+AGG | - | chr4.1:6410102-6410121 | MS.gene79463:intron | 10.0% |
| !! | TATCAAATATTAAAGTTAAA+GGG | + | chr4.1:6411145-6411164 | None:intergenic | 10.0% |
| !! | TTATCAAATATTAAAGTTAA+AGG | + | chr4.1:6411146-6411165 | None:intergenic | 10.0% |
| !!! | TAGTAAAGTTTTTTTTTATA+AGG | + | chr4.1:6410604-6410623 | None:intergenic | 10.0% |
| !! | ATATATACATATATACGTTT+AGG | + | chr4.1:6410298-6410317 | None:intergenic | 15.0% |
| !! | TAATTTACAAGAAAACAAAA+TGG | + | chr4.1:6410249-6410268 | None:intergenic | 15.0% |
| !!! | AATTAGAAAACTTTTCATAT+AGG | - | chr4.1:6411291-6411310 | MS.gene79463:intron | 15.0% |
| !!! | ATTATATGAATATTGACTTA+CGG | + | chr4.1:6411084-6411103 | None:intergenic | 15.0% |
| !!! | ATTTTAATTAGCATGTTAAT+TGG | - | chr4.1:6409977-6409996 | MS.gene79463:intron | 15.0% |
| !! | ATGTATATATTTGTATATGC+AGG | - | chr4.1:6410308-6410327 | MS.gene79463:intron | 20.0% |
| !! | GTTAACGTAATTAAGAAAAT+TGG | + | chr4.1:6411266-6411285 | None:intergenic | 20.0% |
| !!! | AAAAGCTAACGTTAAATTTT+AGG | + | chr4.1:6409931-6409950 | None:intergenic | 20.0% |
| !!! | ATTGAATCTTTTCTTCTTTT+TGG | - | chr4.1:6411329-6411348 | MS.gene79463:intron | 20.0% |
| !!! | TTCTAGTTTCTTTTTATAAG+CGG | - | chr4.1:6409854-6409873 | MS.gene79463:intron | 20.0% |
| ! | AAAAAGAAGGACAAGAAAAA+TGG | + | chr4.1:6411002-6411021 | None:intergenic | 25.0% |
| ! | AACAAAATGGTTACTTACAA+TGG | + | chr4.1:6410236-6410255 | None:intergenic | 25.0% |
| ! | AATAATATATGCATGGCTTA+TGG | + | chr4.1:6409745-6409764 | None:intergenic | 25.0% |
| ! | AATCTGTATGTATGTTAACA+CGG | + | chr4.1:6410005-6410024 | None:intergenic | 25.0% |
| ! | ACGTAATTAAGAAAATTGGT+AGG | + | chr4.1:6411262-6411281 | None:intergenic | 25.0% |
| ! | ATAATTGATGTTGTGAAGAT+TGG | - | chr4.1:6411483-6411502 | MS.gene79463:intron | 25.0% |
| ! | ATACACTTATGTTGAAAACA+AGG | + | chr4.1:6410791-6410810 | None:intergenic | 25.0% |
| ! | CATACAAAGTACAAACAAAT+GGG | + | chr4.1:6411114-6411133 | None:intergenic | 25.0% |
| ! | CGTAATTAAGAAAATTGGTA+GGG | + | chr4.1:6411261-6411280 | None:intergenic | 25.0% |
| ! | GAAAAGCAATAATATATGCA+TGG | + | chr4.1:6409752-6409771 | None:intergenic | 25.0% |
| ! | GAAGATGATATTGATGAATA+AGG | + | chr4.1:6409837-6409856 | None:intergenic | 25.0% |
| ! | GTAATTAAGAAAATTGGTAG+GGG | + | chr4.1:6411260-6411279 | None:intergenic | 25.0% |
| ! | TATCACTTGCTCATTTAATT+GGG | + | chr4.1:6410903-6410922 | None:intergenic | 25.0% |
| ! | TTATCACTTGCTCATTTAAT+TGG | + | chr4.1:6410904-6410923 | None:intergenic | 25.0% |
| ! | TTGAAGATTACGTAAAAAGT+TGG | + | chr4.1:6410334-6410353 | None:intergenic | 25.0% |
| ! | TTTAATGTGCTTCATTAATG+TGG | - | chr4.1:6411197-6411216 | MS.gene79463:intron | 25.0% |
| !!! | AACAATTCCAAAAGTGTTAA+TGG | + | chr4.1:6410470-6410489 | None:intergenic | 25.0% |
| !!! | ATTTTACTCTAAAGAACGTT+TGG | + | chr4.1:6409959-6409978 | None:intergenic | 25.0% |
| !!! | CTTTTTGTCATTGTTTTTAC+AGG | - | chr4.1:6410179-6410198 | MS.gene79463:CDS | 25.0% |
| AGAAACATCTAAGTGCTATA+TGG | - | chr4.1:6411233-6411252 | MS.gene79463:intron | 30.0% | |
| CCATACAAAGTACAAACAAA+TGG | + | chr4.1:6411115-6411134 | None:intergenic | 30.0% | |
| CCATTTGTTTGTACTTTGTA+TGG | - | chr4.1:6411112-6411131 | MS.gene79463:intron | 30.0% | |
| GATATATAGAAATGCTACAC+CGG | - | chr4.1:6411416-6411435 | MS.gene79463:intron | 30.0% | |
| TAACATACATACAGATTGCA+TGG | - | chr4.1:6410008-6410027 | MS.gene79463:intron | 30.0% | |
| TGATATTGATGAATAAGGAG+AGG | + | chr4.1:6409832-6409851 | None:intergenic | 30.0% | |
| ! | CACTTAGATGTTTCTTTTCA+TGG | + | chr4.1:6411228-6411247 | None:intergenic | 30.0% |
| ! | CTTATCACCATTAACACTTT+TGG | - | chr4.1:6410460-6410479 | MS.gene79463:CDS | 30.0% |
| ! | TGTATACCCTTTGTTTCTTT+GGG | + | chr4.1:6410531-6410550 | None:intergenic | 30.0% |
| !! | AGCATTGATGGTTAAAAAGA+AGG | + | chr4.1:6411015-6411034 | None:intergenic | 30.0% |
| !! | ATCTAGTTTGTTATGCTTGT+TGG | - | chr4.1:6409886-6409905 | MS.gene79463:intron | 30.0% |
| AACACAAATCCAAGTGTGTT+TGG | + | chr4.1:6411369-6411388 | None:intergenic | 35.0% | |
| AACACACTTGGATTTGTGTT+CGG | - | chr4.1:6411369-6411388 | MS.gene79463:intron | 35.0% | |
| ATACTTACAATGACGAAGAG+AGG | + | chr4.1:6410822-6410841 | None:intergenic | 35.0% | |
| TAACCATCAATGCTGTTATG+TGG | - | chr4.1:6411021-6411040 | MS.gene79463:intron | 35.0% | |
| TTATGCCCCAAAGAAACAAA+GGG | - | chr4.1:6410522-6410541 | MS.gene79463:CDS | 35.0% | |
| TTCAAGAAGAAATCTGCTGA+GGG | - | chr4.1:6410349-6410368 | MS.gene79463:intron | 35.0% | |
| TTCTCTTGCTGAATGTGTTT+GGG | - | chr4.1:6410691-6410710 | MS.gene79463:CDS | 35.0% | |
| TTTATGCCCCAAAGAAACAA+AGG | - | chr4.1:6410521-6410540 | MS.gene79463:CDS | 35.0% | |
| ! | GTATACCCTTTGTTTCTTTG+GGG | + | chr4.1:6410530-6410549 | None:intergenic | 35.0% |
| ! | GTGTATACCCTTTGTTTCTT+TGG | + | chr4.1:6410532-6410551 | None:intergenic | 35.0% |
| !! | CATTTGTTAACAAGTGCTGA+TGG | - | chr4.1:6410141-6410160 | MS.gene79463:intron | 35.0% |
| !! | GTTTCTTTGGGGCATAAATT+AGG | + | chr4.1:6410519-6410538 | None:intergenic | 35.0% |
| !!! | GAATCTTGGGCTTTTGTTTT+CGG | - | chr4.1:6409691-6409710 | MS.gene79463:CDS | 35.0% |
| !!! | GCTTTTGTTTTCGGCATTAT+AGG | - | chr4.1:6409700-6409719 | MS.gene79463:CDS | 35.0% |
| AGGCAACATCATTTCCTTTG+CGG | - | chr4.1:6410199-6410218 | MS.gene79463:CDS | 40.0% | |
| ATACAGATTGCATGGCGATA+TGG | - | chr4.1:6410016-6410035 | MS.gene79463:intron | 40.0% | |
| ATATAGAAATGCTACACCGG+TGG | - | chr4.1:6411419-6411438 | MS.gene79463:intron | 40.0% | |
| ATCAACTCTCTACCTCTCAA+AGG | - | chr4.1:6410731-6410750 | MS.gene79463:CDS | 40.0% | |
| CAAACACATTCAGCAAGAGA+AGG | + | chr4.1:6410692-6410711 | None:intergenic | 40.0% | |
| CTTCAAGAAGAAATCTGCTG+AGG | - | chr4.1:6410348-6410367 | MS.gene79463:intron | 40.0% | |
| CTTCTCTTGCTGAATGTGTT+TGG | - | chr4.1:6410690-6410709 | MS.gene79463:CDS | 40.0% | |
| GCTGTTATGTGGTTCTTCTA+TGG | - | chr4.1:6411032-6411051 | MS.gene79463:intron | 40.0% | |
| TCAACTCTCTACCTCTCAAA+GGG | - | chr4.1:6410732-6410751 | MS.gene79463:CDS | 40.0% | |
| TGGTTACTTACAATGGTGAG+AGG | + | chr4.1:6410229-6410248 | None:intergenic | 40.0% | |
| TGTGTTCGGCATAATTCAGA+TGG | - | chr4.1:6411383-6411402 | MS.gene79463:intron | 40.0% | |
| ! | AACGTCTTGCTATCATAGGA+TGG | - | chr4.1:6410760-6410779 | MS.gene79463:CDS | 40.0% |
| ! | CACTTTTCAGTGCAATGCTT+TGG | - | chr4.1:6410398-6410417 | MS.gene79463:CDS | 40.0% |
| ! | CAGCAAGAGAAGGAGTTTTA+TGG | + | chr4.1:6410682-6410701 | None:intergenic | 40.0% |
| ! | GAACCACATAACAGCATTGA+TGG | + | chr4.1:6411027-6411046 | None:intergenic | 40.0% |
| ! | GCAAAACGTCTTGCTATCAT+AGG | - | chr4.1:6410756-6410775 | MS.gene79463:CDS | 40.0% |
| ! | TTGCTGAATGTGTTTGGGTT+TGG | - | chr4.1:6410696-6410715 | MS.gene79463:CDS | 40.0% |
| !! | CTGAAAAGTGCCACAACATA+AGG | + | chr4.1:6410388-6410407 | None:intergenic | 40.0% |
| !! | GTAGAGAGTTGATAGAAGCA+TGG | + | chr4.1:6410724-6410743 | None:intergenic | 40.0% |
| ATGAAGGGTCAAGAGTTGAG+TGG | - | chr4.1:6411453-6411472 | MS.gene79463:intron | 45.0% | |
| ATGCAGCTACCAAACACACT+TGG | - | chr4.1:6411357-6411376 | MS.gene79463:intron | 45.0% | |
| CATAGTAATCCCTGAGGAGA+AGG | + | chr4.1:6411058-6411077 | None:intergenic | 45.0% | |
| CCATGCAGAGCAAAGTCATA+AGG | - | chr4.1:6410955-6410974 | MS.gene79463:intron | 45.0% | |
| CCTTATGACTTTGCTCTGCA+TGG | + | chr4.1:6410958-6410977 | None:intergenic | 45.0% | |
| CTCAACTCTTGACCCTTCAT+TGG | + | chr4.1:6411453-6411472 | None:intergenic | 45.0% | |
| GAAATCTGCTGAGGGATTTC+AGG | - | chr4.1:6410357-6410376 | MS.gene79463:intron | 45.0% | |
| GTTCGGCATAATTCAGATGG+TGG | - | chr4.1:6411386-6411405 | MS.gene79463:intron | 45.0% | |
| TCAGGCACTTCCTTATGTTG+TGG | - | chr4.1:6410375-6410394 | MS.gene79463:intron | 45.0% | |
| AAATGCTACACCGGTGGTAG+AGG | - | chr4.1:6411425-6411444 | MS.gene79463:intron | 50.0% | |
| AAGGGTCAAGAGTTGAGTGG+TGG | - | chr4.1:6411456-6411475 | MS.gene79463:intron | 50.0% | |
| AGCCCAAGATTCACGAGTCA+TGG | + | chr4.1:6409683-6409702 | None:intergenic | 50.0% | |
| CGGCAACATAGTAATCCCTG+AGG | + | chr4.1:6411064-6411083 | None:intergenic | 50.0% | |
| CTTCTATGGCCTTCTCCTCA+GGG | - | chr4.1:6411046-6411065 | MS.gene79463:intron | 50.0% | |
| GGCCATGACTCGTGAATCTT+GGG | - | chr4.1:6409678-6409697 | MS.gene79463:CDS | 50.0% | |
| TCTTCTATGGCCTTCTCCTC+AGG | - | chr4.1:6411045-6411064 | MS.gene79463:intron | 50.0% | |
| TGGCCATGACTCGTGAATCT+TGG | - | chr4.1:6409677-6409696 | MS.gene79463:CDS | 50.0% | |
| ! | GACGTTTTGCTCCCTTTGAG+AGG | + | chr4.1:6410746-6410765 | None:intergenic | 50.0% |
| ! | TTCATTGGTGCCTCTACCAC+CGG | + | chr4.1:6411438-6411457 | None:intergenic | 50.0% |
| !! | GTGGTAGAGGCACCAATGAA+GGG | - | chr4.1:6411438-6411457 | MS.gene79463:intron | 50.0% |
| TGGTGAGAGGAACACCGCAA+AGG | + | chr4.1:6410216-6410235 | None:intergenic | 55.0% | |
| !! | GGTGGTAGAGGCACCAATGA+AGG | - | chr4.1:6411437-6411456 | MS.gene79463:intron | 55.0% |
| AACGACCCCAATCGTGCAGG+TGG | - | chr4.1:6411507-6411526 | MS.gene79463:CDS | 60.0% | |
| CACCTCCACCTGCACGATTG+GGG | + | chr4.1:6411515-6411534 | None:intergenic | 60.0% | |
| GCACCTCCACCTGCACGATT+GGG | + | chr4.1:6411516-6411535 | None:intergenic | 60.0% | |
| GGAAACGACCCCAATCGTGC+AGG | - | chr4.1:6411504-6411523 | MS.gene79463:intron | 60.0% | |
| GACCCCAATCGTGCAGGTGG+AGG | - | chr4.1:6411510-6411529 | MS.gene79463:CDS | 65.0% | |
| GGCACCTCCACCTGCACGAT+TGG | + | chr4.1:6411517-6411536 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 6409676 | 6411551 | 6409676 | ID=MS.gene79463 |
| chr4.1 | mRNA | 6409676 | 6411551 | 6409676 | ID=MS.gene79463.t1;Parent=MS.gene79463 |
| chr4.1 | exon | 6411506 | 6411551 | 6411506 | ID=MS.gene79463.t1.exon1;Parent=MS.gene79463.t1 |
| chr4.1 | CDS | 6411506 | 6411551 | 6411506 | ID=cds.MS.gene79463.t1;Parent=MS.gene79463.t1 |
| chr4.1 | exon | 6410990 | 6411026 | 6410990 | ID=MS.gene79463.t1.exon2;Parent=MS.gene79463.t1 |
| chr4.1 | CDS | 6410990 | 6411026 | 6410990 | ID=cds.MS.gene79463.t1;Parent=MS.gene79463.t1 |
| chr4.1 | exon | 6410684 | 6410897 | 6410684 | ID=MS.gene79463.t1.exon3;Parent=MS.gene79463.t1 |
| chr4.1 | CDS | 6410684 | 6410897 | 6410684 | ID=cds.MS.gene79463.t1;Parent=MS.gene79463.t1 |
| chr4.1 | exon | 6410394 | 6410555 | 6410394 | ID=MS.gene79463.t1.exon4;Parent=MS.gene79463.t1 |
| chr4.1 | CDS | 6410394 | 6410555 | 6410394 | ID=cds.MS.gene79463.t1;Parent=MS.gene79463.t1 |
| chr4.1 | exon | 6410145 | 6410264 | 6410145 | ID=MS.gene79463.t1.exon5;Parent=MS.gene79463.t1 |
| chr4.1 | CDS | 6410145 | 6410264 | 6410145 | ID=cds.MS.gene79463.t1;Parent=MS.gene79463.t1 |
| chr4.1 | exon | 6409676 | 6409864 | 6409676 | ID=MS.gene79463.t1.exon6;Parent=MS.gene79463.t1 |
| chr4.1 | CDS | 6409676 | 6409864 | 6409676 | ID=cds.MS.gene79463.t1;Parent=MS.gene79463.t1 |
| Gene Sequence |
| Protein sequence |
