Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69746.t1 | XP_003601464.1 | 96.6 | 268 | 4 | 1 | 1 | 268 | 1 | 263 | 1.50E-135 | 492.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69746.t1 | Q8LBF7 | 56.6 | 251 | 104 | 3 | 6 | 252 | 8 | 257 | 2.8e-71 | 270.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69746.t1 | G7J818 | 96.6 | 268 | 4 | 1 | 1 | 268 | 1 | 263 | 1.0e-135 | 492.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69746.t1 | MTR_3g080990 | 96.642 | 268 | 4 | 1 | 1 | 268 | 1 | 263 | 0.0 | 522 |
MS.gene69746.t1 | MTR_8g099730 | 69.421 | 242 | 73 | 1 | 2 | 243 | 12 | 252 | 1.56e-125 | 357 |
MS.gene69746.t1 | MTR_8g099730 | 69.312 | 189 | 57 | 1 | 55 | 243 | 1 | 188 | 4.09e-94 | 275 |
MS.gene69746.t1 | MTR_6g007633 | 53.275 | 229 | 106 | 1 | 1 | 228 | 1 | 229 | 3.57e-82 | 246 |
MS.gene69746.t1 | MTR_6g007637 | 54.460 | 213 | 96 | 1 | 3 | 214 | 4 | 216 | 2.16e-78 | 238 |
MS.gene69746.t1 | MTR_6g007623 | 51.598 | 219 | 105 | 1 | 8 | 225 | 5 | 223 | 2.35e-72 | 221 |
MS.gene69746.t1 | MTR_4g106990 | 48.469 | 196 | 101 | 0 | 28 | 223 | 35 | 230 | 4.69e-64 | 201 |
MS.gene69746.t1 | MTR_1g029380 | 44.398 | 241 | 120 | 4 | 5 | 233 | 2 | 240 | 2.66e-58 | 186 |
MS.gene69746.t1 | MTR_8g042490 | 42.009 | 219 | 126 | 1 | 2 | 220 | 8 | 225 | 2.86e-56 | 181 |
MS.gene69746.t1 | MTR_3g089125 | 43.556 | 225 | 126 | 1 | 5 | 229 | 2 | 225 | 9.61e-56 | 179 |
MS.gene69746.t1 | MTR_6g007610 | 43.777 | 233 | 113 | 4 | 1 | 220 | 1 | 228 | 2.92e-53 | 173 |
MS.gene69746.t1 | MTR_2g073190 | 40.000 | 225 | 133 | 2 | 1 | 225 | 7 | 229 | 3.34e-49 | 172 |
MS.gene69746.t1 | MTR_2g436310 | 40.164 | 244 | 137 | 3 | 11 | 253 | 8 | 243 | 8.44e-49 | 162 |
MS.gene69746.t1 | MTR_5g067530 | 41.935 | 217 | 116 | 4 | 10 | 222 | 12 | 222 | 2.02e-47 | 159 |
MS.gene69746.t1 | MTR_8g096320 | 41.395 | 215 | 125 | 1 | 3 | 217 | 4 | 217 | 2.96e-47 | 158 |
MS.gene69746.t1 | MTR_1g028460 | 39.720 | 214 | 127 | 1 | 4 | 215 | 2 | 215 | 2.38e-45 | 153 |
MS.gene69746.t1 | MTR_3g098910 | 34.677 | 248 | 152 | 5 | 12 | 257 | 13 | 252 | 7.83e-45 | 153 |
MS.gene69746.t1 | MTR_3g090940 | 34.177 | 237 | 154 | 1 | 4 | 238 | 2 | 238 | 1.46e-44 | 151 |
MS.gene69746.t1 | MTR_3g090950 | 35.043 | 234 | 148 | 3 | 8 | 238 | 6 | 238 | 2.63e-44 | 150 |
MS.gene69746.t1 | MTR_8g096310 | 35.124 | 242 | 142 | 5 | 10 | 243 | 11 | 245 | 8.68e-44 | 150 |
MS.gene69746.t1 | MTR_2g007890 | 35.772 | 246 | 147 | 5 | 12 | 256 | 16 | 251 | 1.88e-42 | 147 |
MS.gene69746.t1 | MTR_7g007490 | 34.298 | 242 | 148 | 3 | 10 | 251 | 12 | 242 | 2.22e-41 | 143 |
MS.gene69746.t1 | MTR_5g092600 | 38.278 | 209 | 126 | 2 | 23 | 231 | 24 | 229 | 6.92e-41 | 141 |
MS.gene69746.t1 | MTR_3g098930 | 40.513 | 195 | 106 | 3 | 4 | 194 | 6 | 194 | 5.23e-37 | 130 |
MS.gene69746.t1 | MTR_7g405730 | 39.706 | 204 | 117 | 3 | 12 | 213 | 13 | 212 | 1.46e-32 | 120 |
MS.gene69746.t1 | MTR_7g405710 | 38.627 | 233 | 127 | 6 | 12 | 232 | 13 | 241 | 3.02e-32 | 120 |
MS.gene69746.t1 | MTR_8g096320 | 39.877 | 163 | 97 | 1 | 55 | 217 | 1 | 162 | 3.48e-31 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69746.t1 | AT4G10850 | 56.800 | 250 | 102 | 3 | 8 | 256 | 10 | 254 | 1.45e-97 | 286 |
MS.gene69746.t1 | AT1G66770 | 52.124 | 259 | 111 | 4 | 8 | 260 | 10 | 261 | 1.66e-90 | 269 |
MS.gene69746.t1 | AT5G62850 | 48.523 | 237 | 117 | 1 | 1 | 232 | 1 | 237 | 5.57e-84 | 251 |
MS.gene69746.t1 | AT3G28007 | 52.968 | 219 | 103 | 0 | 1 | 219 | 1 | 219 | 2.61e-72 | 222 |
MS.gene69746.t1 | AT5G62850 | 50.515 | 194 | 96 | 0 | 1 | 194 | 1 | 194 | 1.72e-71 | 219 |
MS.gene69746.t1 | AT5G40260 | 46.862 | 239 | 118 | 5 | 1 | 235 | 1 | 234 | 4.87e-61 | 193 |
MS.gene69746.t1 | AT1G21460 | 46.154 | 234 | 122 | 4 | 5 | 236 | 2 | 233 | 8.93e-60 | 190 |
MS.gene69746.t1 | AT4G15920 | 42.291 | 227 | 124 | 3 | 11 | 236 | 8 | 228 | 7.96e-52 | 169 |
MS.gene69746.t1 | AT5G40260 | 48.677 | 189 | 93 | 3 | 1 | 186 | 1 | 188 | 1.58e-50 | 165 |
MS.gene69746.t1 | AT5G50800 | 41.441 | 222 | 123 | 4 | 10 | 227 | 11 | 229 | 2.41e-50 | 167 |
MS.gene69746.t1 | AT1G21460 | 47.644 | 191 | 97 | 3 | 5 | 194 | 2 | 190 | 1.07e-49 | 162 |
MS.gene69746.t1 | AT4G25010 | 36.965 | 257 | 153 | 5 | 3 | 253 | 4 | 257 | 1.12e-49 | 165 |
MS.gene69746.t1 | AT3G16690 | 43.541 | 209 | 114 | 3 | 11 | 218 | 8 | 213 | 1.55e-49 | 163 |
MS.gene69746.t1 | AT3G16690 | 43.541 | 209 | 114 | 3 | 11 | 218 | 43 | 248 | 2.47e-49 | 164 |
MS.gene69746.t1 | AT3G14770 | 36.986 | 219 | 137 | 1 | 2 | 220 | 8 | 225 | 2.38e-46 | 155 |
MS.gene69746.t1 | AT5G53190 | 35.659 | 258 | 158 | 3 | 8 | 257 | 6 | 263 | 1.94e-45 | 154 |
MS.gene69746.t1 | AT2G39060 | 37.168 | 226 | 139 | 2 | 12 | 237 | 13 | 235 | 2.17e-45 | 153 |
MS.gene69746.t1 | AT5G13170 | 37.295 | 244 | 144 | 4 | 10 | 248 | 13 | 252 | 2.65e-45 | 154 |
MS.gene69746.t1 | AT5G23660 | 38.462 | 234 | 139 | 3 | 10 | 240 | 13 | 244 | 2.72e-45 | 154 |
MS.gene69746.t1 | AT5G50790 | 40.758 | 211 | 115 | 5 | 9 | 215 | 10 | 214 | 4.67e-43 | 148 |
MS.gene69746.t1 | AT3G48740 | 36.752 | 234 | 143 | 3 | 10 | 240 | 13 | 244 | 1.02e-40 | 142 |
MS.gene69746.t1 | AT3G16690 | 42.958 | 142 | 78 | 2 | 11 | 151 | 8 | 147 | 2.90e-26 | 102 |
Find 64 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTGGAAACGGTGTTTCT+TGG | 0.259955 | 3.4:+77085028 | MS.gene69746:CDS |
ATATGCATGCTCTTTAATAT+TGG | 0.289240 | 3.4:+77084795 | MS.gene69746:CDS |
TCCTTGCTGCTATCTGCTCT+TGG | 0.294814 | 3.4:-77085246 | None:intergenic |
TTCCTATCTTTAGCTTCATT+TGG | 0.307672 | 3.4:+77085012 | MS.gene69746:CDS |
AAAAGGGATGAGCGCATAAA+TGG | 0.341443 | 3.4:-77085052 | None:intergenic |
TGTTGTTGCTGGGGTGGTCT+TGG | 0.347642 | 3.4:-77085333 | None:intergenic |
TGCTTCACCTTTGTCTATCA+TGG | 0.349245 | 3.4:+77084824 | MS.gene69746:CDS |
AGTCTTCCTTGGTTTACTCT+TGG | 0.378667 | 3.4:+77084689 | MS.gene69746:CDS |
CCTTGCTGCTATCTGCTCTT+GGG | 0.380467 | 3.4:-77085245 | None:intergenic |
AACAGCAGAACGTTTGTTAA+CGG | 0.401198 | 3.4:-77084763 | None:intergenic |
AACATTGTCCCAATCCCATT+TGG | 0.407143 | 3.4:-77085178 | None:intergenic |
GCATTCCTTACCGCAATGAA+TGG | 0.418887 | 3.4:-77085078 | None:intergenic |
CGTTGATGAACTGCATGGTT+TGG | 0.424939 | 3.4:+77084535 | MS.gene69746:CDS |
TATCTCAATCAGATACCAAA+TGG | 0.427186 | 3.4:+77085163 | MS.gene69746:intron |
AACAAACGTTCTGCTGTTGT+TGG | 0.429590 | 3.4:+77084768 | MS.gene69746:CDS |
AAGAGGCTCAAAGTCTTCCT+TGG | 0.429746 | 3.4:+77084678 | MS.gene69746:CDS |
ATAGCAGCAAGGAAGAATAA+TGG | 0.431178 | 3.4:+77085256 | MS.gene69746:CDS |
TTTGTTGGAATATGCAAGAA+AGG | 0.432088 | 3.4:+77084474 | MS.gene69746:CDS |
TTATACAGGCCAACATTTGT+TGG | 0.432203 | 3.4:+77084459 | MS.gene69746:intron |
CACACATCCTGCACCATTGA+TGG | 0.437454 | 3.4:-77084607 | None:intergenic |
CGAACAGTAGTGGGTATCAT+AGG | 0.440064 | 3.4:+77084106 | MS.gene69746:CDS |
TGCATGGTTTGGACTCTCTA+CGG | 0.441220 | 3.4:+77084546 | MS.gene69746:CDS |
ACAAACGTTCTGCTGTTGTT+GGG | 0.444778 | 3.4:+77084769 | MS.gene69746:CDS |
TTCCTTGTGGTGACCATCAA+TGG | 0.447143 | 3.4:+77084594 | MS.gene69746:CDS |
ACCGCAATGAATGGGTCAAA+AGG | 0.452161 | 3.4:-77085069 | None:intergenic |
AATCAGATACCAAATGGGAT+TGG | 0.454981 | 3.4:+77085169 | MS.gene69746:intron |
ATCAGATACCAAATGGGATT+GGG | 0.459053 | 3.4:+77085170 | MS.gene69746:intron |
AATATTAAAGAGCATGCATA+TGG | 0.469160 | 3.4:-77084793 | None:intergenic |
TTCCAAATGAAGCTAAAGAT+AGG | 0.471616 | 3.4:-77085014 | None:intergenic |
TTGCATATTCCAACAAATGT+TGG | 0.471666 | 3.4:-77084468 | None:intergenic |
GCAAGGAAGAATAATGGAAA+AGG | 0.488542 | 3.4:+77085262 | MS.gene69746:CDS |
TCTTTAGCTTCATTTGGAAA+CGG | 0.490245 | 3.4:+77085018 | MS.gene69746:CDS |
AGAAATTGCTCGAACAGTAG+TGG | 0.495158 | 3.4:+77084096 | MS.gene69746:CDS |
ATTAATAGTCATTTGACACT+TGG | 0.505938 | 3.4:-77085388 | None:intergenic |
GCATGGTTTGGACTCTCTAC+GGG | 0.509664 | 3.4:+77084547 | MS.gene69746:CDS |
AAACTGTGAGGGTGCACCAT+TGG | 0.523843 | 3.4:-77084573 | None:intergenic |
CAACGTGGCTAGGTATGGTA+CGG | 0.525635 | 3.4:-77084517 | None:intergenic |
TTCATCAACGTGGCTAGGTA+TGG | 0.527477 | 3.4:-77084522 | None:intergenic |
CCGCAATGAATGGGTCAAAA+GGG | 0.533348 | 3.4:-77085068 | None:intergenic |
ATCTCAATCAGATACCAAAT+GGG | 0.541436 | 3.4:+77085164 | MS.gene69746:intron |
CATTCCTTACCGCAATGAAT+GGG | 0.542059 | 3.4:-77085077 | None:intergenic |
GACTCTCTACGGGTTACCAA+TGG | 0.543382 | 3.4:+77084557 | MS.gene69746:CDS |
AATCTGTCAGAAGTGGTAGT+TGG | 0.565227 | 3.4:+77085292 | MS.gene69746:CDS |
GTGGTGACCATCAATGGTGC+AGG | 0.573604 | 3.4:+77084600 | MS.gene69746:CDS |
TGGAGACAAGAACATGCATC+CGG | 0.575505 | 3.4:-77084334 | None:intergenic |
GAAATTGCTCGAACAGTAGT+GGG | 0.576969 | 3.4:+77084097 | MS.gene69746:CDS |
TCAATGAAATAAATGAGAGA+AGG | 0.580735 | 3.4:-77084728 | None:intergenic |
ACTTCAGGAAATGTCATCGC+CGG | 0.582179 | 3.4:+77084315 | MS.gene69746:intron |
AACGTGGCTAGGTATGGTAC+GGG | 0.585953 | 3.4:-77084516 | None:intergenic |
GAAGAATAATGGAAAAGGAG+AGG | 0.598039 | 3.4:+77085267 | MS.gene69746:CDS |
CACCATTGATGGTCACCACA+AGG | 0.603803 | 3.4:-77084596 | None:intergenic |
AGAGGTGAATCTGTCAGAAG+TGG | 0.607458 | 3.4:+77085285 | MS.gene69746:CDS |
TGCAGTTCATCAACGTGGCT+AGG | 0.615839 | 3.4:-77084527 | None:intergenic |
AATATGCAAGAAAGGATCAG+TGG | 0.634670 | 3.4:+77084482 | MS.gene69746:CDS |
CATCAATGGTGCAGGATGTG+TGG | 0.640468 | 3.4:+77084608 | MS.gene69746:CDS |
GTACTAACCATGATAGACAA+AGG | 0.643828 | 3.4:-77084831 | None:intergenic |
GCACCCTCACAGTTTCCTTG+TGG | 0.646427 | 3.4:+77084581 | MS.gene69746:CDS |
CCCAAGAGCAGATAGCAGCA+AGG | 0.662604 | 3.4:+77085245 | MS.gene69746:CDS |
AGCCACGTTGATGAACTGCA+TGG | 0.673870 | 3.4:+77084530 | MS.gene69746:CDS |
TCACCACAAGGAAACTGTGA+GGG | 0.692337 | 3.4:-77084584 | None:intergenic |
GTCACCACAAGGAAACTGTG+AGG | 0.716066 | 3.4:-77084585 | None:intergenic |
TAAGCTCCAAGAGTAAACCA+AGG | 0.717292 | 3.4:-77084695 | None:intergenic |
GATTGGGACAATGTTTGCAG+TGG | 0.718991 | 3.4:+77085186 | MS.gene69746:CDS |
AACCATGCAGTTCATCAACG+TGG | 0.729957 | 3.4:-77084532 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAACAAATATAAGG+TGG | - | chr3.4:77084239-77084258 | None:intergenic | 15.0% |
!! | GTTAAAATTGAAAAATGTAA+GGG | - | chr3.4:77084385-77084404 | None:intergenic | 15.0% |
!! | TAAGATAAAATTGGTTAATA+TGG | + | chr3.4:77084897-77084916 | MS.gene69746:intron | 15.0% |
!!! | TGTTAGTATTGTTAATTTTT+AGG | - | chr3.4:77084407-77084426 | None:intergenic | 15.0% |
!! | CAAAAAGTGATAAATCAATA+AGG | - | chr3.4:77084278-77084297 | None:intergenic | 20.0% |
!! | GGTTAAAATTGAAAAATGTA+AGG | - | chr3.4:77084386-77084405 | None:intergenic | 20.0% |
!! | TAGACTAATATTGTACTAAA+TGG | + | chr3.4:77085136-77085155 | MS.gene69746:intron | 20.0% |
!! | TATGTGATCTTAATAATCTA+TGG | + | chr3.4:77084941-77084960 | MS.gene69746:intron | 20.0% |
! | AAAGTGATAAATCAATAAGG+TGG | - | chr3.4:77084275-77084294 | None:intergenic | 25.0% |
! | ATATGCATGCTCTTTAATAT+TGG | + | chr3.4:77084795-77084814 | MS.gene69746:CDS | 25.0% |
! | ATCTAGAAATAAACTTACAC+TGG | - | chr3.4:77084357-77084376 | None:intergenic | 25.0% |
! | CTTCATGTTCTTAATTATAC+AGG | + | chr3.4:77084445-77084464 | MS.gene69746:intron | 25.0% |
! | TCAATGAAATAAATGAGAGA+AGG | - | chr3.4:77084731-77084750 | None:intergenic | 25.0% |
!! | AATATTAAAGAGCATGCATA+TGG | - | chr3.4:77084796-77084815 | None:intergenic | 25.0% |
!! | GTTAATATGGATTGTTGAAT+TGG | + | chr3.4:77084910-77084929 | MS.gene69746:intron | 25.0% |
ATCTCAATCAGATACCAAAT+GGG | + | chr3.4:77085164-77085183 | MS.gene69746:intron | 30.0% | |
GAAGCTAAAGATAGGAAAAA+CGG | - | chr3.4:77085009-77085028 | None:intergenic | 30.0% | |
TATATTCTGACCGTAAAAAG+AGG | + | chr3.4:77084661-77084680 | MS.gene69746:CDS | 30.0% | |
TATCTCAATCAGATACCAAA+TGG | + | chr3.4:77085163-77085182 | MS.gene69746:intron | 30.0% | |
TTCCAAATGAAGCTAAAGAT+AGG | - | chr3.4:77085017-77085036 | None:intergenic | 30.0% | |
TTGCATATTCCAACAAATGT+TGG | - | chr3.4:77084471-77084490 | None:intergenic | 30.0% | |
TTTGTTGGAATATGCAAGAA+AGG | + | chr3.4:77084474-77084493 | MS.gene69746:CDS | 30.0% | |
! | TCTTTAGCTTCATTTGGAAA+CGG | + | chr3.4:77085018-77085037 | MS.gene69746:CDS | 30.0% |
! | TTCCTATCTTTAGCTTCATT+TGG | + | chr3.4:77085012-77085031 | MS.gene69746:CDS | 30.0% |
!!! | ATCTTTTTGTTGTTGTTGCT+GGG | - | chr3.4:77085346-77085365 | None:intergenic | 30.0% |
!!! | TATCTTTTTGTTGTTGTTGC+TGG | - | chr3.4:77085347-77085366 | None:intergenic | 30.0% |
AATATGCAAGAAAGGATCAG+TGG | + | chr3.4:77084482-77084501 | MS.gene69746:CDS | 35.0% | |
AATCAGATACCAAATGGGAT+TGG | + | chr3.4:77085169-77085188 | MS.gene69746:intron | 35.0% | |
ACATATGTACTCGTTACTTC+AGG | + | chr3.4:77084168-77084187 | MS.gene69746:intron | 35.0% | |
ATAGCAGCAAGGAAGAATAA+TGG | + | chr3.4:77085256-77085275 | MS.gene69746:CDS | 35.0% | |
ATCAGATACCAAATGGGATT+GGG | + | chr3.4:77085170-77085189 | MS.gene69746:intron | 35.0% | |
GTACTAACCATGATAGACAA+AGG | - | chr3.4:77084834-77084853 | None:intergenic | 35.0% | |
TGAAGTGAAGAGAGAAAACA+AGG | - | chr3.4:77084301-77084320 | None:intergenic | 35.0% | |
TTATACAGGCCAACATTTGT+TGG | + | chr3.4:77084459-77084478 | MS.gene69746:intron | 35.0% | |
! | AACAGCAGAACGTTTGTTAA+CGG | - | chr3.4:77084766-77084785 | None:intergenic | 35.0% |
! | AGACTTTGAGCCTCTTTTTA+CGG | - | chr3.4:77084674-77084693 | None:intergenic | 35.0% |
! | GAAGAATAATGGAAAAGGAG+AGG | + | chr3.4:77085267-77085286 | MS.gene69746:CDS | 35.0% |
! | GCAAGGAAGAATAATGGAAA+AGG | + | chr3.4:77085262-77085281 | MS.gene69746:CDS | 35.0% |
! | TTGTTTTCTCTCTTCACTTC+AGG | + | chr3.4:77084300-77084319 | MS.gene69746:intron | 35.0% |
!!! | TCTTTTTGTTGTTGTTGCTG+GGG | - | chr3.4:77085345-77085364 | None:intergenic | 35.0% |
AAAAGGGATGAGCGCATAAA+TGG | - | chr3.4:77085055-77085074 | None:intergenic | 40.0% | |
AACAAACGTTCTGCTGTTGT+TGG | + | chr3.4:77084768-77084787 | MS.gene69746:CDS | 40.0% | |
AACATTGTCCCAATCCCATT+TGG | - | chr3.4:77085181-77085200 | None:intergenic | 40.0% | |
AATCTGTCAGAAGTGGTAGT+TGG | + | chr3.4:77085292-77085311 | MS.gene69746:CDS | 40.0% | |
ACAAACGTTCTGCTGTTGTT+GGG | + | chr3.4:77084769-77084788 | MS.gene69746:CDS | 40.0% | |
AGAAATTGCTCGAACAGTAG+TGG | + | chr3.4:77084096-77084115 | MS.gene69746:CDS | 40.0% | |
AGTCTTCCTTGGTTTACTCT+TGG | + | chr3.4:77084689-77084708 | MS.gene69746:CDS | 40.0% | |
CATTCCTTACCGCAATGAAT+GGG | - | chr3.4:77085080-77085099 | None:intergenic | 40.0% | |
CATTTGGAAACGGTGTTTCT+TGG | + | chr3.4:77085028-77085047 | MS.gene69746:CDS | 40.0% | |
GAAATTGCTCGAACAGTAGT+GGG | + | chr3.4:77084097-77084116 | MS.gene69746:CDS | 40.0% | |
TAAGCTCCAAGAGTAAACCA+AGG | - | chr3.4:77084698-77084717 | None:intergenic | 40.0% | |
TGCTTCACCTTTGTCTATCA+TGG | + | chr3.4:77084824-77084843 | MS.gene69746:CDS | 40.0% | |
AACCATGCAGTTCATCAACG+TGG | - | chr3.4:77084535-77084554 | None:intergenic | 45.0% | |
AAGAGGCTCAAAGTCTTCCT+TGG | + | chr3.4:77084678-77084697 | MS.gene69746:CDS | 45.0% | |
ACCGCAATGAATGGGTCAAA+AGG | - | chr3.4:77085072-77085091 | None:intergenic | 45.0% | |
ACTTCAGGAAATGTCATCGC+CGG | + | chr3.4:77084315-77084334 | MS.gene69746:intron | 45.0% | |
AGAGGTGAATCTGTCAGAAG+TGG | + | chr3.4:77085285-77085304 | MS.gene69746:CDS | 45.0% | |
CCGCAATGAATGGGTCAAAA+GGG | - | chr3.4:77085071-77085090 | None:intergenic | 45.0% | |
GATTGGGACAATGTTTGCAG+TGG | + | chr3.4:77085186-77085205 | MS.gene69746:CDS | 45.0% | |
GCATTCCTTACCGCAATGAA+TGG | - | chr3.4:77085081-77085100 | None:intergenic | 45.0% | |
TCACCACAAGGAAACTGTGA+GGG | - | chr3.4:77084587-77084606 | None:intergenic | 45.0% | |
TGGAGACAAGAACATGCATC+CGG | - | chr3.4:77084337-77084356 | None:intergenic | 45.0% | |
TTCATCAACGTGGCTAGGTA+TGG | - | chr3.4:77084525-77084544 | None:intergenic | 45.0% | |
TTCCTTGTGGTGACCATCAA+TGG | + | chr3.4:77084594-77084613 | MS.gene69746:CDS | 45.0% | |
TTGACCCATTCATTGCGGTA+AGG | + | chr3.4:77085073-77085092 | MS.gene69746:intron | 45.0% | |
! | CCCTTTTGACCCATTCATTG+CGG | + | chr3.4:77085068-77085087 | MS.gene69746:CDS | 45.0% |
! | CGTTGATGAACTGCATGGTT+TGG | + | chr3.4:77084535-77084554 | MS.gene69746:CDS | 45.0% |
! | TGCATGGTTTGGACTCTCTA+CGG | + | chr3.4:77084546-77084565 | MS.gene69746:CDS | 45.0% |
!! | ACAGTAGTGGGTATCATAGG+TGG | + | chr3.4:77084109-77084128 | MS.gene69746:intron | 45.0% |
!! | CAGTAGTGGGTATCATAGGT+GGG | + | chr3.4:77084110-77084129 | MS.gene69746:intron | 45.0% |
!! | CGAACAGTAGTGGGTATCAT+AGG | + | chr3.4:77084106-77084125 | MS.gene69746:CDS | 45.0% |
!!! | TTTTGTTGTTGTTGCTGGGG+TGG | - | chr3.4:77085342-77085361 | None:intergenic | 45.0% |
!! | TTAAAAAAAAAACAAATATA+AGG | - | chr3.4:77084242-77084261 | None:intergenic | 5.0% |
!!! | TTTTTTATTTAAGATAAAAT+TGG | + | chr3.4:77084888-77084907 | MS.gene69746:intron | 5.0% |
AACGTGGCTAGGTATGGTAC+GGG | - | chr3.4:77084519-77084538 | None:intergenic | 50.0% | |
CAACGTGGCTAGGTATGGTA+CGG | - | chr3.4:77084520-77084539 | None:intergenic | 50.0% | |
CACACATCCTGCACCATTGA+TGG | - | chr3.4:77084610-77084629 | None:intergenic | 50.0% | |
CATCAATGGTGCAGGATGTG+TGG | + | chr3.4:77084608-77084627 | MS.gene69746:CDS | 50.0% | |
CCTTGCTGCTATCTGCTCTT+GGG | - | chr3.4:77085248-77085267 | None:intergenic | 50.0% | |
GTCACCACAAGGAAACTGTG+AGG | - | chr3.4:77084588-77084607 | None:intergenic | 50.0% | |
TCCTTGCTGCTATCTGCTCT+TGG | - | chr3.4:77085249-77085268 | None:intergenic | 50.0% | |
TGCAGTTCATCAACGTGGCT+AGG | - | chr3.4:77084530-77084549 | None:intergenic | 50.0% | |
! | AAACTGTGAGGGTGCACCAT+TGG | - | chr3.4:77084576-77084595 | None:intergenic | 50.0% |
! | AGCCACGTTGATGAACTGCA+TGG | + | chr3.4:77084530-77084549 | MS.gene69746:CDS | 50.0% |
! | CACCATTGATGGTCACCACA+AGG | - | chr3.4:77084599-77084618 | None:intergenic | 50.0% |
! | GACTCTCTACGGGTTACCAA+TGG | + | chr3.4:77084557-77084576 | MS.gene69746:CDS | 50.0% |
! | GCATGGTTTGGACTCTCTAC+GGG | + | chr3.4:77084547-77084566 | MS.gene69746:CDS | 50.0% |
CCCAAGAGCAGATAGCAGCA+AGG | + | chr3.4:77085245-77085264 | MS.gene69746:CDS | 55.0% | |
GCACCCTCACAGTTTCCTTG+TGG | + | chr3.4:77084581-77084600 | MS.gene69746:CDS | 55.0% | |
GTGGTGACCATCAATGGTGC+AGG | + | chr3.4:77084600-77084619 | MS.gene69746:CDS | 55.0% | |
TGTTGTTGCTGGGGTGGTCT+TGG | - | chr3.4:77085336-77085355 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 77084085 | 77085402 | 77084085 | ID=MS.gene69746 |
chr3.4 | mRNA | 77084085 | 77085402 | 77084085 | ID=MS.gene69746.t1;Parent=MS.gene69746 |
chr3.4 | exon | 77084085 | 77084127 | 77084085 | ID=MS.gene69746.t1.exon1;Parent=MS.gene69746.t1 |
chr3.4 | CDS | 77084085 | 77084127 | 77084085 | ID=cds.MS.gene69746.t1;Parent=MS.gene69746.t1 |
chr3.4 | exon | 77084322 | 77084358 | 77084322 | ID=MS.gene69746.t1.exon2;Parent=MS.gene69746.t1 |
chr3.4 | CDS | 77084322 | 77084358 | 77084322 | ID=cds.MS.gene69746.t1;Parent=MS.gene69746.t1 |
chr3.4 | exon | 77084467 | 77084845 | 77084467 | ID=MS.gene69746.t1.exon3;Parent=MS.gene69746.t1 |
chr3.4 | CDS | 77084467 | 77084845 | 77084467 | ID=cds.MS.gene69746.t1;Parent=MS.gene69746.t1 |
chr3.4 | exon | 77084970 | 77085089 | 77084970 | ID=MS.gene69746.t1.exon4;Parent=MS.gene69746.t1 |
chr3.4 | CDS | 77084970 | 77085089 | 77084970 | ID=cds.MS.gene69746.t1;Parent=MS.gene69746.t1 |
chr3.4 | exon | 77085175 | 77085402 | 77085175 | ID=MS.gene69746.t1.exon5;Parent=MS.gene69746.t1 |
chr3.4 | CDS | 77085175 | 77085402 | 77085175 | ID=cds.MS.gene69746.t1;Parent=MS.gene69746.t1 |
Gene Sequence |
Protein sequence |