AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019015

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019015.t1 MTR_0067s0100 98.214 280 5 0 1 280 1 280 0.0 572
MS.gene019015.t1 MTR_5g088720 60.068 293 93 6 1 272 46 335 7.46e-115 335
MS.gene019015.t1 MTR_5g088720 60.068 293 93 6 1 272 5 294 8.39e-115 333
MS.gene019015.t1 MTR_5g088720 60.274 292 92 6 2 272 1 289 1.17e-114 333
MS.gene019015.t1 MTR_1g051105 40.876 274 108 8 7 279 8 228 7.41e-55 178
MS.gene019015.t1 MTR_3g072630 33.203 256 134 7 8 235 20 266 1.31e-36 133
MS.gene019015.t1 MTR_3g072630 33.203 256 134 7 8 235 20 266 1.37e-36 133
MS.gene019015.t1 MTR_3g068005 32.932 249 144 5 2 235 1 241 4.86e-34 127
MS.gene019015.t1 MTR_2g097620 34.156 243 133 7 3 235 9 234 8.05e-33 123
MS.gene019015.t1 MTR_6g079660 53.271 107 46 2 133 235 174 280 9.56e-33 124
MS.gene019015.t1 MTR_4g064570 35.565 239 121 8 7 235 11 226 3.10e-32 122
MS.gene019015.t1 MTR_1g114320 30.315 254 155 9 8 251 13 254 1.86e-28 111
MS.gene019015.t1 MTR_5g080350 46.847 111 46 3 135 235 131 238 4.15e-26 106
MS.gene019015.t1 MTR_2g007340 33.193 238 133 8 8 234 23 245 2.80e-25 102
MS.gene019015.t1 MTR_3g083480 41.176 153 61 8 140 271 189 333 4.35e-25 102
MS.gene019015.t1 MTR_7g074170 36.066 122 70 3 135 248 286 407 4.09e-20 90.1
MS.gene019015.t1 MTR_1g114620 45.977 87 45 1 149 235 225 309 6.75e-19 85.5
MS.gene019015.t1 MTR_5g041310 43.182 88 46 2 149 235 76 160 3.55e-18 81.6
MS.gene019015.t1 MTR_5g041330 44.318 88 45 2 149 235 66 150 3.96e-18 81.3
MS.gene019015.t1 MTR_6g032960 39.855 138 67 7 144 271 189 320 2.57e-17 80.9
MS.gene019015.t1 MTR_1g014710 25.781 256 163 8 3 244 45 287 6.32e-17 79.7
MS.gene019015.t1 MTR_4g110100 29.333 150 97 5 88 235 263 405 8.71e-15 74.3
MS.gene019015.t1 MTR_5g058530 50.847 59 28 1 177 234 210 268 1.98e-14 72.8
MS.gene019015.t1 MTR_3g088080 37.500 80 45 2 159 235 6 83 4.36e-13 63.9
MS.gene019015.t1 MTR_3g025510 30.693 101 70 0 131 231 46 146 4.66e-12 63.2
MS.gene019015.t1 MTR_7g059360 33.333 87 54 2 154 236 119 205 7.56e-12 63.9
MS.gene019015.t1 MTR_6g016350 34.884 86 54 2 151 235 272 356 1.22e-11 64.7
MS.gene019015.t1 MTR_3g087900 34.483 87 55 2 172 257 52 137 2.46e-11 61.2
MS.gene019015.t1 MTR_3g025380 31.250 80 55 0 152 231 56 135 5.33e-11 59.7
MS.gene019015.t1 MTR_3g031000 32.039 103 58 3 137 235 247 341 7.40e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019015.t1 AT2G40830 43.421 304 118 11 1 272 1 282 3.80e-65 207
MS.gene019015.t1 AT2G40830 43.421 304 118 11 1 272 1 282 3.80e-65 207
MS.gene019015.t1 AT2G40830 43.421 304 118 11 1 272 1 282 3.80e-65 207
MS.gene019015.t1 AT2G40830 43.421 304 118 11 1 272 1 282 3.80e-65 207
MS.gene019015.t1 AT3G56580 43.878 294 115 9 1 272 1 266 3.29e-64 204
MS.gene019015.t1 AT3G56580 43.878 294 115 9 1 272 1 266 3.29e-64 204
MS.gene019015.t1 AT3G56580 43.878 294 115 9 1 272 1 266 3.29e-64 204
MS.gene019015.t1 AT3G19950 30.389 283 177 10 8 272 21 301 7.20e-37 134
MS.gene019015.t1 AT3G19950 30.389 283 177 10 8 272 79 359 2.11e-36 134
MS.gene019015.t1 AT3G19950 30.389 283 177 10 8 272 79 359 2.11e-36 134
MS.gene019015.t1 AT4G26400 29.970 337 156 12 6 270 3 331 5.41e-35 129
MS.gene019015.t1 AT4G26400 29.970 337 156 12 6 270 3 331 5.41e-35 129
MS.gene019015.t1 AT3G10815 47.015 134 50 3 149 280 78 192 4.59e-34 122
MS.gene019015.t1 AT3G46620 28.226 248 142 4 7 235 30 260 5.52e-31 119
MS.gene019015.t1 AT1G60360 29.310 290 175 10 8 273 24 307 7.88e-30 115
MS.gene019015.t1 AT5G59550 29.213 267 153 6 6 255 16 263 6.43e-29 114
MS.gene019015.t1 AT5G59550 29.213 267 153 6 6 255 121 368 9.70e-29 114
MS.gene019015.t1 AT1G55530 28.517 263 149 8 8 251 9 251 3.27e-27 107
MS.gene019015.t1 AT2G39720 31.020 245 152 6 6 235 4 246 1.08e-26 107
MS.gene019015.t1 AT2G39720 31.020 245 152 6 6 235 4 246 1.08e-26 107
MS.gene019015.t1 AT5G56340 36.364 165 70 4 135 271 206 363 2.08e-26 107
MS.gene019015.t1 AT1G55530 28.070 285 155 10 8 251 9 284 5.70e-26 105
MS.gene019015.t1 AT1G55530 28.070 285 155 10 8 251 9 284 5.70e-26 105
MS.gene019015.t1 AT3G13430 42.000 100 50 2 140 235 175 270 1.11e-22 95.5
MS.gene019015.t1 AT3G13430 42.000 100 50 2 140 235 175 270 1.11e-22 95.5
MS.gene019015.t1 AT3G13430 42.000 100 50 2 140 235 175 270 1.11e-22 95.5
MS.gene019015.t1 AT3G13430 42.000 100 50 2 140 235 175 270 1.11e-22 95.5
MS.gene019015.t1 AT5G01980 40.517 116 62 2 135 243 292 407 1.89e-22 97.1
MS.gene019015.t1 AT1G68180 36.620 142 85 3 133 272 80 218 2.79e-22 92.8
MS.gene019015.t1 AT5G20910 38.095 105 60 2 145 244 180 284 8.71e-19 84.7
MS.gene019015.t1 AT1G14200 36.283 113 68 2 125 235 44 154 7.78e-18 79.7
MS.gene019015.t1 AT2G44330 53.521 71 27 1 171 235 71 141 1.60e-17 78.6
MS.gene019015.t1 AT3G60080 48.052 77 32 1 171 239 142 218 2.91e-17 80.5
MS.gene019015.t1 AT1G26800 42.169 83 44 1 156 238 83 161 1.62e-16 76.6
MS.gene019015.t1 AT5G15820 43.038 79 44 1 158 235 258 336 1.71e-16 79.0
MS.gene019015.t1 AT3G02340 36.458 96 59 2 141 235 286 380 6.69e-16 77.4
MS.gene019015.t1 AT3G02340 36.458 96 59 2 141 235 286 380 6.69e-16 77.4
MS.gene019015.t1 AT5G60820 33.962 106 66 1 134 235 312 417 2.73e-14 72.8
MS.gene019015.t1 AT5G08139 37.255 102 56 4 139 235 256 354 3.30e-14 72.4
MS.gene019015.t1 AT5G64920 41.429 70 41 0 165 234 232 301 5.98e-14 71.2
MS.gene019015.t1 AT2G44578 47.368 57 29 1 185 240 65 121 5.53e-12 62.8
MS.gene019015.t1 AT2G44581 46.667 60 31 1 178 236 58 117 1.12e-11 62.0
MS.gene019015.t1 AT3G63530 36.667 90 50 2 149 234 155 241 2.22e-11 63.2
MS.gene019015.t1 AT3G63530 36.667 90 50 2 149 234 155 241 2.22e-11 63.2

Find 72 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATCTTTCTATACAAAT+TGG 0.226745 3.2:-31995744 None:intergenic
GATCCTAGGCGCTCTGATTT+TGG 0.252248 3.2:+31995573 MS.gene019015:CDS
GTCAGAAGGAGATCTGTTTC+TGG 0.285730 3.2:+31995465 MS.gene019015:CDS
AGAGGTTCTGTGCCGAGAAT+TGG 0.291737 3.2:+31995378 MS.gene019015:CDS
ATGGACGTGGTAGTCGAAAC+TGG 0.336669 3.2:+31995883 MS.gene019015:CDS
CCTTCTGACATCAAAGTTTG+TGG 0.338937 3.2:-31995451 None:intergenic
AAGATTTGAACTCGGCTCTA+AGG 0.350121 3.2:+31995758 MS.gene019015:CDS
ATGTGCTTGTGTGATCTTAA+TGG 0.358030 3.2:-31995700 None:intergenic
GTTCTGTTCCTGAACAAACT+TGG 0.360754 3.2:+31995487 MS.gene019015:CDS
TCCCTCCCTGCAAGCAAGAT+TGG 0.373236 3.2:-31995219 None:intergenic
TTCTGTTCCTGAACAAACTT+GGG 0.378708 3.2:+31995488 MS.gene019015:CDS
TGTATAGCATCGAAAATATC+AGG 0.379466 3.2:-31995339 None:intergenic
AGGCAGCCAATCTTGCTTGC+AGG 0.386295 3.2:+31995213 MS.gene019015:CDS
GGTCGTTATTTAATATTTCA+AGG 0.398786 3.2:+31995528 MS.gene019015:CDS
AAAACACCCCAAGTTTGTTC+AGG 0.400287 3.2:-31995495 None:intergenic
GAGGTTCTGTGCCGAGAATT+GGG 0.403499 3.2:+31995379 MS.gene019015:CDS
TGTCAAGGAGAGCAACATTC+TGG 0.409017 3.2:+31995178 MS.gene019015:CDS
CGGCTCTAAGGCAAGGGAAA+TGG 0.417056 3.2:+31995770 MS.gene019015:CDS
CTAGGATCACCTCTAGAGTT+AGG 0.425909 3.2:-31995558 None:intergenic
GAAGATCGTGAGGCCGGGGC+TGG 0.441156 3.2:-31995660 None:intergenic
AGTACTGGTCAAAACAATAA+TGG 0.442277 3.2:+31995924 MS.gene019015:CDS
ACTCAGACTGCATTGTTCCT+TGG 0.451088 3.2:+31995811 MS.gene019015:CDS
GCATCTCTAAACCCAATTCT+CGG 0.467906 3.2:-31995390 None:intergenic
TTTGAATTAGAAGAACGAAA+TGG 0.468156 3.2:-31995981 None:intergenic
CATGCTGTTGTTAGTCAAAG+AGG 0.469628 3.2:+31995360 MS.gene019015:CDS
GGAAGCTCAACACGGCAAAC+AGG 0.475843 3.2:-31995855 None:intergenic
ACTTGCATCGTCATCACAGC+TGG 0.477526 3.2:+31995299 MS.gene019015:CDS
TCAATTGAAGATCGTGAGGC+CGG 0.478607 3.2:-31995666 None:intergenic
GGCAGCCAATCTTGCTTGCA+GGG 0.479103 3.2:+31995214 MS.gene019015:CDS
GCCAATCTTGCTTGCAGGGA+GGG 0.479583 3.2:+31995218 MS.gene019015:CDS
CGTGTTGAGCTTCCACCTCA+TGG 0.484116 3.2:+31995864 MS.gene019015:CDS
CAATTGAAGATCGTGAGGCC+GGG 0.489376 3.2:-31995665 None:intergenic
GGTGGCTACTTTATGGATCA+CGG 0.499195 3.2:+31995594 MS.gene019015:CDS
ACAAATCCTCCATCGCAGTA+AGG 0.508538 3.2:-31995252 None:intergenic
TAGTTACATGAGGCAGAGAA+TGG 0.521893 3.2:+31995419 MS.gene019015:CDS
GCAGTTTGCCCTTACTGCGA+TGG 0.532835 3.2:+31995243 MS.gene019015:CDS
TGGACGTGGTAGTCGAAACT+GGG 0.533237 3.2:+31995884 MS.gene019015:CDS
TTGAAATATTAAATAACGAC+CGG 0.536094 3.2:-31995526 None:intergenic
ACAAATTGGACAATGTGAAT+CGG 0.536227 3.2:-31995730 None:intergenic
AATTGAAGATCGTGAGGCCG+GGG 0.540826 3.2:-31995664 None:intergenic
CAAATCCTCCATCGCAGTAA+GGG 0.544283 3.2:-31995251 None:intergenic
CATTCTGGTGTCATACATGC+AGG 0.549275 3.2:+31995193 MS.gene019015:CDS
GGAAGGAATGACAATAGTAC+TGG 0.550104 3.2:+31995909 MS.gene019015:CDS
TACATGAGGCAGAGAATGGA+TGG 0.556193 3.2:+31995423 MS.gene019015:CDS
CTAACTCTAGAGGTGATCCT+AGG 0.562644 3.2:+31995559 MS.gene019015:CDS
TTGAACTCGGCTCTAAGGCA+AGG 0.563629 3.2:+31995763 MS.gene019015:CDS
GTTTGCCCTTACTGCGATGG+AGG 0.563964 3.2:+31995246 MS.gene019015:CDS
AAACACTCGTGGTCCAGCCC+CGG 0.566850 3.2:+31995647 MS.gene019015:CDS
CCACAAACTTTGATGTCAGA+AGG 0.578648 3.2:+31995451 MS.gene019015:CDS
GGTCAAAACAATAATGGTCG+AGG 0.580022 3.2:+31995930 MS.gene019015:CDS
GTAGTCGAAACTGGGGAGGA+AGG 0.581819 3.2:+31995892 MS.gene019015:CDS
GAGCTTCCACCTCATGGACG+TGG 0.592429 3.2:+31995870 MS.gene019015:CDS
TGCTTCAATTGAAGATCGTG+AGG 0.596957 3.2:-31995670 None:intergenic
GTGAAGGAGAAATGATGTCA+AGG 0.600083 3.2:+31995163 None:intergenic
CCACCAAAATCAGAGCGCCT+AGG 0.607919 3.2:-31995576 None:intergenic
AAAACAATAATGGTCGAGGA+AGG 0.608481 3.2:+31995934 MS.gene019015:CDS
TGTATAGAAAGATTTGAACT+CGG 0.625011 3.2:+31995750 MS.gene019015:CDS
GGTCAAACACCTAACTCTAG+AGG 0.636722 3.2:+31995549 MS.gene019015:CDS
TGAACTCGGCTCTAAGGCAA+GGG 0.639396 3.2:+31995764 MS.gene019015:CDS
TCTGTTCCTGAACAAACTTG+GGG 0.640531 3.2:+31995489 MS.gene019015:CDS
CGACTACCACGTCCATGAGG+TGG 0.643750 3.2:-31995876 None:intergenic
AAGGAACAATGCAGTCTGAG+TGG 0.661615 3.2:-31995809 None:intergenic
CAAGAAATGCATGAGAATCG+AGG 0.661832 3.2:+31995276 MS.gene019015:CDS
AGCCAATCTTGCTTGCAGGG+AGG 0.665797 3.2:+31995217 MS.gene019015:CDS
CATGAGGTGGAAGCTCAACA+CGG 0.670445 3.2:-31995863 None:intergenic
ATGCTATTGATAGTTACATG+AGG 0.671620 3.2:+31995409 MS.gene019015:CDS
CGTGGTAGTCGAAACTGGGG+AGG 0.672506 3.2:+31995888 MS.gene019015:CDS
CAACTCAATACAAACACTCG+TGG 0.681335 3.2:+31995636 MS.gene019015:CDS
GAATTATGCTGAATTAACCA+AGG 0.687405 3.2:-31995828 None:intergenic
GCTTGTGTGATCTTAATGGT+AGG 0.695857 3.2:-31995696 None:intergenic
TTTCGACTACCACGTCCATG+AGG 0.711120 3.2:-31995879 None:intergenic
GGACGTGGTAGTCGAAACTG+GGG 0.722632 3.2:+31995885 MS.gene019015:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATCTTTCTATACAAAT+TGG - chr3.2:31995747-31995766 None:intergenic 20.0%
!! TTGAAATATTAAATAACGAC+CGG - chr3.2:31995529-31995548 None:intergenic 20.0%
! GGTCGTTATTTAATATTTCA+AGG + chr3.2:31995528-31995547 MS.gene019015:CDS 25.0%
! TGTATAGAAAGATTTGAACT+CGG + chr3.2:31995750-31995769 MS.gene019015:CDS 25.0%
! TTTGAATTAGAAGAACGAAA+TGG - chr3.2:31995984-31996003 None:intergenic 25.0%
!!! GAAATCCATTTTCATTTTTG+TGG + chr3.2:31995958-31995977 MS.gene019015:CDS 25.0%
AATGGCCACAAAAATGAAAA+TGG - chr3.2:31995966-31995985 None:intergenic 30.0%
ACAAATTGGACAATGTGAAT+CGG - chr3.2:31995733-31995752 None:intergenic 30.0%
GAATTATGCTGAATTAACCA+AGG - chr3.2:31995831-31995850 None:intergenic 30.0%
! ATGCTATTGATAGTTACATG+AGG + chr3.2:31995409-31995428 MS.gene019015:CDS 30.0%
! TGTATAGCATCGAAAATATC+AGG - chr3.2:31995342-31995361 None:intergenic 30.0%
!! AGTACTGGTCAAAACAATAA+TGG + chr3.2:31995924-31995943 MS.gene019015:CDS 30.0%
AAAACAATAATGGTCGAGGA+AGG + chr3.2:31995934-31995953 MS.gene019015:CDS 35.0%
ATGTGCTTGTGTGATCTTAA+TGG - chr3.2:31995703-31995722 None:intergenic 35.0%
TTCTGTTCCTGAACAAACTT+GGG + chr3.2:31995488-31995507 MS.gene019015:CDS 35.0%
!! TGATTTTGGTGGCTACTTTA+TGG + chr3.2:31995587-31995606 MS.gene019015:CDS 35.0%
AAGATTTGAACTCGGCTCTA+AGG + chr3.2:31995758-31995777 MS.gene019015:CDS 40.0%
CAACTCAATACAAACACTCG+TGG + chr3.2:31995636-31995655 MS.gene019015:CDS 40.0%
CAAGAAATGCATGAGAATCG+AGG + chr3.2:31995276-31995295 MS.gene019015:CDS 40.0%
CATGCTGTTGTTAGTCAAAG+AGG + chr3.2:31995360-31995379 MS.gene019015:CDS 40.0%
CCACAAACTTTGATGTCAGA+AGG + chr3.2:31995451-31995470 MS.gene019015:CDS 40.0%
CCTTCTGACATCAAAGTTTG+TGG - chr3.2:31995454-31995473 None:intergenic 40.0%
GCATCTCTAAACCCAATTCT+CGG - chr3.2:31995393-31995412 None:intergenic 40.0%
GCTTGTGTGATCTTAATGGT+AGG - chr3.2:31995699-31995718 None:intergenic 40.0%
GGAAGGAATGACAATAGTAC+TGG + chr3.2:31995909-31995928 MS.gene019015:CDS 40.0%
GGTCAAAACAATAATGGTCG+AGG + chr3.2:31995930-31995949 MS.gene019015:CDS 40.0%
GTTCTGTTCCTGAACAAACT+TGG + chr3.2:31995487-31995506 MS.gene019015:CDS 40.0%
TAGTTACATGAGGCAGAGAA+TGG + chr3.2:31995419-31995438 MS.gene019015:CDS 40.0%
TCTGTTCCTGAACAAACTTG+GGG + chr3.2:31995489-31995508 MS.gene019015:CDS 40.0%
TGCTTCAATTGAAGATCGTG+AGG - chr3.2:31995673-31995692 None:intergenic 40.0%
! AAAACACCCCAAGTTTGTTC+AGG - chr3.2:31995498-31995517 None:intergenic 40.0%
!!! TGGGGTGTTTTTAGTTCTTC+CGG + chr3.2:31995507-31995526 MS.gene019015:CDS 40.0%
AAGGAACAATGCAGTCTGAG+TGG - chr3.2:31995812-31995831 None:intergenic 45.0%
ACAAATCCTCCATCGCAGTA+AGG - chr3.2:31995255-31995274 None:intergenic 45.0%
ACTCAGACTGCATTGTTCCT+TGG + chr3.2:31995811-31995830 MS.gene019015:CDS 45.0%
CAAATCCTCCATCGCAGTAA+GGG - chr3.2:31995254-31995273 None:intergenic 45.0%
GGTCAAACACCTAACTCTAG+AGG + chr3.2:31995549-31995568 MS.gene019015:CDS 45.0%
GTCAGAAGGAGATCTGTTTC+TGG + chr3.2:31995465-31995484 MS.gene019015:CDS 45.0%
TACATGAGGCAGAGAATGGA+TGG + chr3.2:31995423-31995442 MS.gene019015:CDS 45.0%
TCAATTGAAGATCGTGAGGC+CGG - chr3.2:31995669-31995688 None:intergenic 45.0%
TGTCAAGGAGAGCAACATTC+TGG + chr3.2:31995178-31995197 MS.gene019015:CDS 45.0%
! CTAACTCTAGAGGTGATCCT+AGG + chr3.2:31995559-31995578 MS.gene019015:CDS 45.0%
! GGTGGCTACTTTATGGATCA+CGG + chr3.2:31995594-31995613 MS.gene019015:CDS 45.0%
!! CATTCTGGTGTCATACATGC+AGG + chr3.2:31995193-31995212 MS.gene019015:CDS 45.0%
!! CTAGGATCACCTCTAGAGTT+AGG - chr3.2:31995561-31995580 None:intergenic 45.0%
AATTGAAGATCGTGAGGCCG+GGG - chr3.2:31995667-31995686 None:intergenic 50.0%
ACTTGCATCGTCATCACAGC+TGG + chr3.2:31995299-31995318 MS.gene019015:CDS 50.0%
AGAGGTTCTGTGCCGAGAAT+TGG + chr3.2:31995378-31995397 MS.gene019015:CDS 50.0%
ATGGACGTGGTAGTCGAAAC+TGG + chr3.2:31995883-31995902 MS.gene019015:CDS 50.0%
CAATTGAAGATCGTGAGGCC+GGG - chr3.2:31995668-31995687 None:intergenic 50.0%
CATGAGGTGGAAGCTCAACA+CGG - chr3.2:31995866-31995885 None:intergenic 50.0%
GAGGTTCTGTGCCGAGAATT+GGG + chr3.2:31995379-31995398 MS.gene019015:CDS 50.0%
TGGACGTGGTAGTCGAAACT+GGG + chr3.2:31995884-31995903 MS.gene019015:CDS 50.0%
TTTCGACTACCACGTCCATG+AGG - chr3.2:31995882-31995901 None:intergenic 50.0%
! GATCCTAGGCGCTCTGATTT+TGG + chr3.2:31995573-31995592 MS.gene019015:CDS 50.0%
!! TGAACTCGGCTCTAAGGCAA+GGG + chr3.2:31995764-31995783 MS.gene019015:CDS 50.0%
!! TTGAACTCGGCTCTAAGGCA+AGG + chr3.2:31995763-31995782 MS.gene019015:CDS 50.0%
AGCCAATCTTGCTTGCAGGG+AGG + chr3.2:31995217-31995236 MS.gene019015:CDS 55.0%
AGGCAGCCAATCTTGCTTGC+AGG + chr3.2:31995213-31995232 MS.gene019015:CDS 55.0%
CGTGTTGAGCTTCCACCTCA+TGG + chr3.2:31995864-31995883 MS.gene019015:CDS 55.0%
GCAGTTTGCCCTTACTGCGA+TGG + chr3.2:31995243-31995262 MS.gene019015:CDS 55.0%
GCCAATCTTGCTTGCAGGGA+GGG + chr3.2:31995218-31995237 MS.gene019015:CDS 55.0%
GGAAGCTCAACACGGCAAAC+AGG - chr3.2:31995858-31995877 None:intergenic 55.0%
GGACGTGGTAGTCGAAACTG+GGG + chr3.2:31995885-31995904 MS.gene019015:CDS 55.0%
GGCAGCCAATCTTGCTTGCA+GGG + chr3.2:31995214-31995233 MS.gene019015:CDS 55.0%
GTAGTCGAAACTGGGGAGGA+AGG + chr3.2:31995892-31995911 MS.gene019015:CDS 55.0%
GTTTGCCCTTACTGCGATGG+AGG + chr3.2:31995246-31995265 MS.gene019015:CDS 55.0%
TCCCTCCCTGCAAGCAAGAT+TGG - chr3.2:31995222-31995241 None:intergenic 55.0%
! CCACCAAAATCAGAGCGCCT+AGG - chr3.2:31995579-31995598 None:intergenic 55.0%
! CCTAGGCGCTCTGATTTTGG+TGG + chr3.2:31995576-31995595 MS.gene019015:CDS 55.0%
!! CGGCTCTAAGGCAAGGGAAA+TGG + chr3.2:31995770-31995789 MS.gene019015:CDS 55.0%
AAACACTCGTGGTCCAGCCC+CGG + chr3.2:31995647-31995666 MS.gene019015:CDS 60.0%
CGACTACCACGTCCATGAGG+TGG - chr3.2:31995879-31995898 None:intergenic 60.0%
CGTGGTAGTCGAAACTGGGG+AGG + chr3.2:31995888-31995907 MS.gene019015:CDS 60.0%
GAGCTTCCACCTCATGGACG+TGG + chr3.2:31995870-31995889 MS.gene019015:CDS 60.0%
GAAGATCGTGAGGCCGGGGC+TGG - chr3.2:31995663-31995682 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 31995174 31996016 31995174 ID=MS.gene019015
chr3.2 mRNA 31995174 31996016 31995174 ID=MS.gene019015.t1;Parent=MS.gene019015
chr3.2 exon 31995174 31996016 31995174 ID=MS.gene019015.t1.exon1;Parent=MS.gene019015.t1
chr3.2 CDS 31995174 31996016 31995174 ID=cds.MS.gene019015.t1;Parent=MS.gene019015.t1
Gene Sequence

>MS.gene019015

ATGATGTCAAGGAGAGCAACATTCTGGTGTCATACATGCAGGCAGCCAATCTTGCTTGCAGGGAGGGATGCAGTTTGCCCTTACTGCGATGGAGGATTTGTGCAAGAAATGCATGAGAATCGAGGACTTGCATCGTCATCACAGCTGGAAGAGTTTCAAGATGATCCTGATATTTTCGATGCTATACATGCTGTTGTTAGTCAAAGAGGTTCTGTGCCGAGAATTGGGTTTAGAGATGCTATTGATAGTTACATGAGGCAGAGAATGGATGGCAGAACCACAAACTTTGATGTCAGAAGGAGATCTGTTTCTGGTTCTGTTCCTGAACAAACTTGGGGTGTTTTTAGTTCTTCCGGTCGTTATTTAATATTTCAAGGTCAAACACCTAACTCTAGAGGTGATCCTAGGCGCTCTGATTTTGGTGGCTACTTTATGGATCACGGCTTAGATGAACTTATCGAACAACTCAATACAAACACTCGTGGTCCAGCCCCGGCCTCACGATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATCTTCACTCCGATTCACATTGTCCAATTTGTATAGAAAGATTTGAACTCGGCTCTAAGGCAAGGGAAATGGCATGTAAGCATATATACCACTCAGACTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTTCCACCTCATGGACGTGGTAGTCGAAACTGGGGAGGAAGGAATGACAATAGTACTGGTCAAAACAATAATGGTCGAGGAAGGAGAAATCCATTTTCATTTTTGTGGCCATTTCGTTCTTCTAATTCAAATAATAATCATTGA
Protein sequence

>MS.gene019015.t1

MMSRRATFWCHTCRQPILLAGRDAVCPYCDGGFVQEMHENRGLASSSQLEEFQDDPDIFDAIHAVVSQRGSVPRIGFRDAIDSYMRQRMDGRTTNFDVRRRSVSGSVPEQTWGVFSSSGRYLIFQGQTPNSRGDPRRSDFGGYFMDHGLDELIEQLNTNTRGPAPASRSSIEAMPTIKITQAHLHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSRNWGGRNDNSTGQNNNGRGRRNPFSFLWPFRSSNSNNNH