AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93134

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93134.t1 MTR_1g114320 94.872 312 9 1 14 325 11 315 0.0 569
MS.gene93134.t1 MTR_6g079660 45.734 293 117 7 1 253 1 291 5.94e-65 209
MS.gene93134.t1 MTR_3g068005 37.255 255 116 9 16 244 7 243 4.62e-42 150
MS.gene93134.t1 MTR_3g083480 45.455 165 66 4 143 303 189 333 8.36e-40 143
MS.gene93134.t1 MTR_4g064570 34.156 243 120 8 16 244 12 228 1.75e-36 135
MS.gene93134.t1 MTR_2g097620 32.246 276 157 10 16 277 14 273 2.66e-36 134
MS.gene93134.t1 MTR_5g080350 29.577 284 156 9 17 272 5 272 6.43e-32 123
MS.gene93134.t1 MTR_3g072630 30.483 269 129 11 14 243 18 267 1.12e-31 121
MS.gene93134.t1 MTR_1g114620 43.671 158 76 5 94 250 172 317 1.95e-31 120
MS.gene93134.t1 MTR_3g072630 30.483 269 129 11 14 243 18 267 2.04e-31 120
MS.gene93134.t1 MTR_5g088720 49.505 101 48 2 142 242 148 245 3.02e-31 120
MS.gene93134.t1 MTR_5g088720 49.505 101 48 2 142 242 153 250 3.54e-31 120
MS.gene93134.t1 MTR_5g088720 49.505 101 48 2 142 242 194 291 4.52e-31 120
MS.gene93134.t1 MTR_7g074170 46.154 117 63 0 141 257 289 405 1.01e-30 121
MS.gene93134.t1 MTR_1g051105 46.789 109 55 2 142 250 107 212 6.26e-30 114
MS.gene93134.t1 MTR_4g110100 47.059 119 60 1 133 251 299 414 2.02e-28 114
MS.gene93134.t1 MTR_0067s0100 45.098 102 52 2 141 242 138 235 1.30e-26 106
MS.gene93134.t1 MTR_6g032960 39.370 127 69 2 143 267 186 306 2.98e-26 106
MS.gene93134.t1 MTR_6g016350 43.902 123 69 0 127 249 241 363 1.03e-23 100
MS.gene93134.t1 MTR_1g014710 39.623 106 62 1 147 250 181 286 4.45e-22 94.7
MS.gene93134.t1 MTR_3g088080 46.575 73 36 1 171 243 15 84 4.06e-21 86.3
MS.gene93134.t1 MTR_2g007340 56.923 65 27 1 177 241 182 245 5.80e-21 91.7
MS.gene93134.t1 MTR_5g041330 37.374 99 56 2 149 247 63 155 2.52e-19 85.5
MS.gene93134.t1 MTR_5g041310 38.384 99 55 2 149 247 73 165 2.98e-19 85.1
MS.gene93134.t1 MTR_3g025510 28.571 119 75 3 129 241 35 149 7.82e-14 68.6
MS.gene93134.t1 MTR_2g061790 43.478 69 39 0 197 265 109 177 9.66e-13 67.0
MS.gene93134.t1 MTR_6g087150 25.000 168 114 3 158 324 80 236 4.84e-12 66.6
MS.gene93134.t1 MTR_3g031000 38.356 73 36 2 171 243 279 342 6.17e-11 63.2
MS.gene93134.t1 MTR_1g103050 31.776 107 58 3 138 238 59 156 7.25e-11 60.5
MS.gene93134.t1 MTR_7g073200 32.110 109 68 2 154 261 64 167 8.51e-11 60.5
MS.gene93134.t1 MTR_2g076290 26.994 163 95 5 93 243 180 330 8.52e-11 62.8
MS.gene93134.t1 MTR_2g078440 42.308 52 30 0 193 244 249 300 9.98e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93134.t1 AT3G19950 53.333 300 99 9 1 270 1 289 1.27e-94 284
MS.gene93134.t1 AT3G19950 53.333 300 99 9 1 270 59 347 1.59e-94 286
MS.gene93134.t1 AT3G19950 53.333 300 99 9 1 270 59 347 1.59e-94 286
MS.gene93134.t1 AT1G55530 60.656 122 39 3 139 257 170 285 2.00e-44 155
MS.gene93134.t1 AT1G55530 60.656 122 39 3 139 257 170 285 2.00e-44 155
MS.gene93134.t1 AT3G13430 37.024 289 132 10 16 259 9 292 2.59e-44 154
MS.gene93134.t1 AT3G13430 37.024 289 132 10 16 259 9 292 2.59e-44 154
MS.gene93134.t1 AT3G13430 37.024 289 132 10 16 259 9 292 2.59e-44 154
MS.gene93134.t1 AT3G13430 37.024 289 132 10 16 259 9 292 2.59e-44 154
MS.gene93134.t1 AT1G55530 61.017 118 38 2 142 257 141 252 8.95e-44 153
MS.gene93134.t1 AT5G56340 45.251 179 76 4 128 303 204 363 5.52e-41 147
MS.gene93134.t1 AT4G26400 51.327 113 49 1 141 253 191 297 4.77e-36 133
MS.gene93134.t1 AT4G26400 51.327 113 49 1 141 253 191 297 4.77e-36 133
MS.gene93134.t1 AT2G40830 34.167 240 133 7 17 243 9 236 2.22e-35 131
MS.gene93134.t1 AT2G40830 34.167 240 133 7 17 243 9 236 2.22e-35 131
MS.gene93134.t1 AT2G40830 34.167 240 133 7 17 243 9 236 2.22e-35 131
MS.gene93134.t1 AT2G40830 34.167 240 133 7 17 243 9 236 2.22e-35 131
MS.gene93134.t1 AT3G46620 30.576 278 153 8 16 272 31 289 3.58e-35 132
MS.gene93134.t1 AT3G56580 35.146 239 126 7 17 242 9 231 1.57e-33 126
MS.gene93134.t1 AT3G56580 35.146 239 126 7 17 242 9 231 1.57e-33 126
MS.gene93134.t1 AT3G56580 35.146 239 126 7 17 242 9 231 1.57e-33 126
MS.gene93134.t1 AT5G59550 41.290 155 83 4 125 272 122 275 4.60e-33 126
MS.gene93134.t1 AT5G59550 41.290 155 83 4 125 272 227 380 1.34e-32 127
MS.gene93134.t1 AT2G39720 31.727 249 146 8 16 245 6 249 7.01e-32 123
MS.gene93134.t1 AT2G39720 31.727 249 146 8 16 245 6 249 7.01e-32 123
MS.gene93134.t1 AT5G01980 47.368 114 59 1 141 254 295 407 2.88e-31 122
MS.gene93134.t1 AT1G60360 30.345 290 150 11 3 255 8 282 3.47e-31 120
MS.gene93134.t1 AT5G15820 48.039 102 53 0 152 253 246 347 2.25e-28 112
MS.gene93134.t1 AT5G08139 45.714 105 47 2 152 251 264 363 1.41e-25 105
MS.gene93134.t1 AT3G02340 40.517 116 68 1 153 267 291 406 4.00e-25 104
MS.gene93134.t1 AT3G02340 40.517 116 68 1 153 267 291 406 4.00e-25 104
MS.gene93134.t1 AT5G20910 48.810 84 41 1 169 250 200 283 1.91e-23 98.6
MS.gene93134.t1 AT3G10815 45.745 94 49 2 151 244 77 168 6.90e-22 92.0
MS.gene93134.t1 AT5G64920 43.802 121 62 3 138 253 194 313 1.01e-20 91.7
MS.gene93134.t1 AT1G26800 37.383 107 60 2 150 256 73 172 1.18e-19 85.9
MS.gene93134.t1 AT5G60820 39.806 103 56 3 145 244 320 419 5.63e-18 84.3
MS.gene93134.t1 AT1G68180 40.698 86 49 2 157 241 98 182 1.14e-17 81.3
MS.gene93134.t1 AT3G60080 43.243 74 35 1 177 243 142 215 1.72e-16 79.0
MS.gene93134.t1 AT1G14200 39.506 81 48 1 162 242 75 154 5.11e-16 75.5
MS.gene93134.t1 AT2G44330 53.191 47 22 0 197 243 96 142 7.85e-15 72.0
MS.gene93134.t1 AT1G18770 39.474 76 45 1 167 242 30 104 7.01e-14 67.4
MS.gene93134.t1 AT5G02750 49.020 51 26 0 196 246 213 263 1.33e-13 70.5
MS.gene93134.t1 AT2G29840 37.895 95 57 2 152 245 199 292 1.38e-13 70.5
MS.gene93134.t1 AT2G03000 40.845 71 36 2 171 241 461 525 1.67e-12 68.6
MS.gene93134.t1 AT1G18760 34.940 83 52 1 163 245 143 223 2.42e-12 65.9
MS.gene93134.t1 AT5G52140 30.097 103 61 3 141 241 185 278 2.69e-11 63.5
MS.gene93134.t1 AT3G30460 36.765 68 40 2 178 242 77 144 9.21e-11 59.7
MS.gene93134.t1 AT5G06490 32.432 74 42 2 173 238 98 171 9.29e-11 60.8

Find 122 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 1.1:+80395938 MS.gene93134:CDS
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 1.1:-80395655 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 1.1:-80395706 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 1.1:+80395939 MS.gene93134:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 1.1:+80395809 MS.gene93134:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 1.1:+80396497 MS.gene93134:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 1.1:+80396477 MS.gene93134:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 1.1:+80395535 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 1.1:+80396484 MS.gene93134:CDS
ATATCTCTGCGGTATCCTTT+TGG 0.328546 1.1:+80396435 MS.gene93134:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 1.1:-80395807 None:intergenic
GGCAATTCATGTCGACAAAC+AGG 0.344933 1.1:-80396249 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 1.1:-80395827 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 1.1:+80395976 MS.gene93134:CDS
GGTGGTGGTAGCAGTGGTGG+TGG 0.356931 1.1:+80396378 MS.gene93134:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 1.1:+80395955 MS.gene93134:CDS
GGTGGTAGCAGTGGTGGTGG+AGG 0.383648 1.1:+80396381 MS.gene93134:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 1.1:+80395559 MS.gene93134:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 1.1:+80395649 MS.gene93134:CDS
TGCTCAGGACTCTGGTGAAA+GGG 0.401420 1.1:+80396470 MS.gene93134:CDS
ATGATGATTGCTTGCTTCCA+TGG 0.401701 1.1:+80396205 MS.gene93134:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 1.1:-80395654 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 1.1:-80395705 None:intergenic
GGTGGTGGTGGTAGCAGTGG+TGG 0.420491 1.1:+80396375 MS.gene93134:CDS
AGGGATGGTAACGGTGGCGA+TGG 0.423838 1.1:+80396303 MS.gene93134:CDS
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 1.1:+80395562 MS.gene93134:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 1.1:-80396036 None:intergenic
TGGTTCAGATGACTCTGCTC+AGG 0.429490 1.1:+80396455 MS.gene93134:CDS
GTTAGGGTTAGGGTTAGGTT+CGG 0.433893 1.1:-80395695 None:intergenic
GGTAGCAGTGGTGGTGGAGG+AGG 0.436996 1.1:+80396384 MS.gene93134:CDS
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 1.1:+80395553 MS.gene93134:CDS
TTAGGGTTAGGGTTAGGTTC+GGG 0.443732 1.1:-80395694 None:intergenic
GAAGGGATGGAATGGAAATT+CGG 0.445340 1.1:-80395767 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 1.1:+80395931 MS.gene93134:CDS
AACAGTACCGTTGGTGGTGG+TGG 0.448041 1.1:+80396348 MS.gene93134:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 1.1:+80395556 MS.gene93134:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 1.1:+80395970 MS.gene93134:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 1.1:-80395965 None:intergenic
ATGATGCTGATTATGAGAAC+CGG 0.453554 1.1:+80396277 MS.gene93134:CDS
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 1.1:-80395798 None:intergenic
GTAACGGTGGCGATGGGTTG+AGG 0.457788 1.1:+80396310 MS.gene93134:CDS
GAATCAATGTGCTGTTTGTC+AGG 0.459494 1.1:+80396128 MS.gene93134:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 1.1:-80395821 None:intergenic
ATCACGTTAGGGTTAGGGTT+AGG 0.462218 1.1:-80395700 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 1.1:-80395712 None:intergenic
GGGGTCGAAACTATCGGAAT+CGG 0.469880 1.1:-80395839 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 1.1:+80396144 MS.gene93134:CDS
GATGGGTTGAGGTCTGTTGT+TGG 0.484013 1.1:+80396321 MS.gene93134:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 1.1:-80395755 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 1.1:+80396027 MS.gene93134:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 1.1:-80395785 None:intergenic
GATGACTCTGCTCAGGACTC+TGG 0.494585 1.1:+80396462 MS.gene93134:CDS
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 1.1:+80395544 None:intergenic
TTCAGAATCATCGTCGGTGC+AGG 0.495095 1.1:-80395623 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 1.1:-80395646 None:intergenic
CTGCTCAGGACTCTGGTGAA+AGG 0.499574 1.1:+80396469 MS.gene93134:CDS
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 1.1:-80395799 None:intergenic
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 1.1:-80395780 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 1.1:+80395550 MS.gene93134:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 1.1:+80396050 MS.gene93134:CDS
GAAACTATCGGAATCGGGTC+GGG 0.511848 1.1:-80395833 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 1.1:-80395784 None:intergenic
TCATGATAAACATGCTTACA+AGG 0.513615 1.1:-80396186 None:intergenic
GCAGAGTCATCTGAACCAAA+AGG 0.515275 1.1:-80396450 None:intergenic
CACATTCTTCGAGAAAACCT+TGG 0.516574 1.1:-80395666 None:intergenic
AGTACCGTTGGTGGTGGTGG+TGG 0.516728 1.1:+80396351 MS.gene93134:CDS
TGATGATGCGTTGTTGAACT+CGG 0.517659 1.1:+80396101 MS.gene93134:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 1.1:-80395899 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 1.1:-80395845 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 1.1:+80395593 MS.gene93134:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 1.1:-80395891 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 1.1:-80395775 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 1.1:-80395735 None:intergenic
GGGATGGTAACGGTGGCGAT+GGG 0.544115 1.1:+80396304 MS.gene93134:CDS
GGGTCGAAACTATCGGAATC+GGG 0.544986 1.1:-80395838 None:intergenic
ATTCTGAAAGTTCTGTGGAC+AGG 0.545677 1.1:-80396414 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 1.1:+80395547 MS.gene93134:CDS
CTGATTATGAGAACCGGGGT+AGG 0.547933 1.1:+80396283 MS.gene93134:CDS
TATGAGAACCGGGGTAGGGA+TGG 0.558385 1.1:+80396288 MS.gene93134:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 1.1:-80395834 None:intergenic
GGTAACAGTACCGTTGGTGG+TGG 0.569307 1.1:+80396345 MS.gene93134:CDS
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 1.1:-80396054 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 1.1:-80395859 None:intergenic
GAATCGTTACGGCACACCGC+CGG 0.579890 1.1:+80396038 MS.gene93134:CDS
GAGTTATGCAATTCAAGCCA+TGG 0.582250 1.1:-80396222 None:intergenic
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 1.1:-80395964 None:intergenic
GCTCAGGACTCTGGTGAAAG+GGG 0.588802 1.1:+80396471 MS.gene93134:CDS
GCAATTGATTCAGCAGCTTG+CGG 0.589049 1.1:+80396005 MS.gene93134:CDS
GTTCAACAACGCATCATCAA+CGG 0.590877 1.1:-80396097 None:intergenic
TGATTATGAGAACCGGGGTA+GGG 0.593107 1.1:+80396284 MS.gene93134:CDS
TTAACAGCCTCTTTCGACGC+CGG 0.593234 1.1:-80396057 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 1.1:-80395711 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 1.1:+80395868 MS.gene93134:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 1.1:+80395883 MS.gene93134:CDS
TCATAATCAGCATCATCAGT+AGG 0.603013 1.1:-80396270 None:intergenic
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 1.1:-80395860 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 1.1:+80395932 MS.gene93134:CDS
CACCGTTACCATCCCTACCC+CGG 0.609569 1.1:-80396296 None:intergenic
TGATGCTGATTATGAGAACC+GGG 0.618591 1.1:+80396278 MS.gene93134:CDS
GAGATATTCTGAAAGTTCTG+TGG 0.618924 1.1:-80396419 None:intergenic
GGCCGTTGAGATGATTCTGA+AGG 0.619045 1.1:-80395870 None:intergenic
GTTGGTGGTAACAGTACCGT+TGG 0.622508 1.1:+80396339 MS.gene93134:CDS
TTAGAGGGAACCCGAAACCC+TGG 0.623256 1.1:-80395949 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 1.1:-80395600 None:intergenic
GCAATTCATGTCGACAAACA+GGG 0.630959 1.1:-80396248 None:intergenic
GGGTTGAGGTCTGTTGTTGG+TGG 0.640822 1.1:+80396324 MS.gene93134:CDS
GGTGGTAACAGTACCGTTGG+TGG 0.642968 1.1:+80396342 MS.gene93134:CDS
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 1.1:+80396071 MS.gene93134:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 1.1:-80395972 None:intergenic
CGGGGTAGGGATGGTAACGG+TGG 0.648198 1.1:+80396297 MS.gene93134:CDS
AACCCTGGTTCAGATTCAGA+AGG 0.650452 1.1:-80395934 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 1.1:-80395752 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 1.1:+80396152 MS.gene93134:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 1.1:-80395726 None:intergenic
GCATCATCAACGGTCACCGT+CGG 0.671989 1.1:-80396087 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 1.1:-80395629 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 1.1:+80395538 None:intergenic
AACCGGGGTAGGGATGGTAA+CGG 0.688725 1.1:+80396294 MS.gene93134:CDS
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 1.1:-80395858 None:intergenic
GAACTTTCAGAATATCTCTG+CGG 0.750243 1.1:+80396424 MS.gene93134:CDS
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 1.1:-80395987 None:intergenic
GATGCTGATTATGAGAACCG+GGG 0.800968 1.1:+80396279 MS.gene93134:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGCAGAATTAAGGAGTAAT+GGG - chr1.1:80395801-80395820 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG - chr1.1:80396189-80396208 None:intergenic 30.0%
AGAAAACCTTGGAAGCAAAT+TGG - chr1.1:80395658-80395677 None:intergenic 35.0%
GAAAACCTTGGAAGCAAATT+GGG - chr1.1:80395657-80395676 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG + chr1.1:80396424-80396443 MS.gene93134:CDS 35.0%
GAAGCAGAATTAAGGAGTAA+TGG - chr1.1:80395802-80395821 None:intergenic 35.0%
TCATAATCAGCATCATCAGT+AGG - chr1.1:80396273-80396292 None:intergenic 35.0%
TGGAAATAGGCAAGAAGATT+TGG + chr1.1:80396497-80396516 MS.gene93134:CDS 35.0%
TGGAAATTCGGAATCTGAAT+CGG - chr1.1:80395758-80395777 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG + chr1.1:80395868-80395887 MS.gene93134:CDS 35.0%
! ATGATGCTGATTATGAGAAC+CGG + chr1.1:80396277-80396296 MS.gene93134:CDS 35.0%
! GAGATATTCTGAAAGTTCTG+TGG - chr1.1:80396422-80396441 None:intergenic 35.0%
AAATTCGGAATCTGAATCGG+AGG - chr1.1:80395755-80395774 None:intergenic 40.0%
AAGTAATCGCCAAGGTTAGA+GGG - chr1.1:80395967-80395986 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG + chr1.1:80395932-80395951 MS.gene93134:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG + chr1.1:80396205-80396224 MS.gene93134:CDS 40.0%
CACATTCTTCGAGAAAACCT+TGG - chr1.1:80395669-80395688 None:intergenic 40.0%
GAAAGGTTCAGAATCATCGT+CGG - chr1.1:80395632-80395651 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG - chr1.1:80395770-80395789 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG - chr1.1:80395902-80395921 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG + chr1.1:80396027-80396046 MS.gene93134:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG - chr1.1:80396225-80396244 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG - chr1.1:80396251-80396270 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG - chr1.1:80395708-80395727 None:intergenic 40.0%
GTGAAAGGGGATTTGGAAAT+AGG + chr1.1:80396484-80396503 MS.gene93134:CDS 40.0%
GTTCAACAACGCATCATCAA+CGG - chr1.1:80396100-80396119 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG - chr1.1:80395714-80395733 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG - chr1.1:80395810-80395829 None:intergenic 40.0%
TGTCAGGATGAGTTTGAGAA+AGG + chr1.1:80396144-80396163 MS.gene93134:CDS 40.0%
TTAATTCTGCTTCCGTTTCC+AGG + chr1.1:80395809-80395828 MS.gene93134:CDS 40.0%
TTGAAGCGGAAAATCACGTT+AGG - chr1.1:80395715-80395734 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG + chr1.1:80396435-80396454 MS.gene93134:CDS 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG - chr1.1:80395863-80395882 None:intergenic 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG - chr1.1:80396417-80396436 None:intergenic 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG + chr1.1:80396152-80396171 MS.gene93134:CDS 40.0%
! TGATGATGCGTTGTTGAACT+CGG + chr1.1:80396101-80396120 MS.gene93134:CDS 40.0%
! TGATGCTGATTATGAGAACC+GGG + chr1.1:80396278-80396297 MS.gene93134:CDS 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG - chr1.1:80395862-80395881 None:intergenic 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG + chr1.1:80396128-80396147 MS.gene93134:CDS 40.0%
AACCCTGGTTCAGATTCAGA+AGG - chr1.1:80395937-80395956 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG + chr1.1:80395970-80395989 MS.gene93134:CDS 45.0%
ATCACGTTAGGGTTAGGGTT+AGG - chr1.1:80395703-80395722 None:intergenic 45.0%
CATCCTTCTGAATCTGAACC+AGG + chr1.1:80395931-80395950 MS.gene93134:CDS 45.0%
CGGAAAATCACGTTAGGGTT+AGG - chr1.1:80395709-80395728 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG + chr1.1:80395938-80395957 MS.gene93134:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG - chr1.1:80395968-80395987 None:intergenic 45.0%
GCAGAGTCATCTGAACCAAA+AGG - chr1.1:80396453-80396472 None:intergenic 45.0%
GGCAATTCATGTCGACAAAC+AGG - chr1.1:80396252-80396271 None:intergenic 45.0%
GGCTGTTAAGAATCTTCCGA+CGG + chr1.1:80396071-80396090 MS.gene93134:CDS 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG - chr1.1:80395698-80395717 None:intergenic 45.0%
TGAATCTGAACCAGGGTTTC+GGG + chr1.1:80395939-80395958 MS.gene93134:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG + chr1.1:80396284-80396303 MS.gene93134:CDS 45.0%
TGGAAGCAAATTGGGCAGAA+AGG - chr1.1:80395649-80395668 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG - chr1.1:80395697-80395716 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG - chr1.1:80395787-80395806 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG + chr1.1:80396279-80396298 MS.gene93134:CDS 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG - chr1.1:80395861-80395880 None:intergenic 45.0%
! GCAATTGATTCAGCAGCTTG+CGG + chr1.1:80396005-80396024 MS.gene93134:CDS 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG + chr1.1:80395649-80395668 MS.gene93134:CDS 45.0%
!! GATCGTGATGATGGTTGAAG+CGG - chr1.1:80395729-80395748 None:intergenic 45.0%
AGAAGAGCGAAGGGATGGAA+TGG - chr1.1:80395778-80395797 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG - chr1.1:80395848-80395867 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG - chr1.1:80395837-80395856 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG - chr1.1:80395738-80395757 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG + chr1.1:80396283-80396302 MS.gene93134:CDS 50.0%
GAAACTATCGGAATCGGGTC+GGG - chr1.1:80395836-80395855 None:intergenic 50.0%
GACTCTGGTGAAAGGGGATT+TGG + chr1.1:80396477-80396496 MS.gene93134:CDS 50.0%
GGCCGTTGAGATGATTCTGA+AGG - chr1.1:80395873-80395892 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG - chr1.1:80395842-80395861 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG - chr1.1:80395841-80395860 None:intergenic 50.0%
TGCTCAGGACTCTGGTGAAA+GGG + chr1.1:80396470-80396489 MS.gene93134:CDS 50.0%
TGGTTCAGATGACTCTGCTC+AGG + chr1.1:80396455-80396474 MS.gene93134:CDS 50.0%
TTAACAGCCTCTTTCGACGC+CGG - chr1.1:80396060-80396079 None:intergenic 50.0%
TTCAGAATCATCGTCGGTGC+AGG - chr1.1:80395626-80395645 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG - chr1.1:80395788-80395807 None:intergenic 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG + chr1.1:80396321-80396340 MS.gene93134:CDS 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG + chr1.1:80396339-80396358 MS.gene93134:CDS 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG + chr1.1:80395955-80395974 MS.gene93134:CDS 50.0%
AACCGGGGTAGGGATGGTAA+CGG + chr1.1:80396294-80396313 MS.gene93134:CDS 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG - chr1.1:80395783-80395802 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG - chr1.1:80395975-80395994 None:intergenic 55.0%
CTGCTCAGGACTCTGGTGAA+AGG + chr1.1:80396469-80396488 MS.gene93134:CDS 55.0%
GATGACTCTGCTCAGGACTC+TGG + chr1.1:80396462-80396481 MS.gene93134:CDS 55.0%
GCATCATCAACGGTCACCGT+CGG - chr1.1:80396090-80396109 None:intergenic 55.0%
GCTCAGGACTCTGGTGAAAG+GGG + chr1.1:80396471-80396490 MS.gene93134:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG + chr1.1:80396324-80396343 MS.gene93134:CDS 55.0%
GGTGGTAACAGTACCGTTGG+TGG + chr1.1:80396342-80396361 MS.gene93134:CDS 55.0%
TAACTCTCCGACTGCACACG+TGG - chr1.1:80395603-80395622 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG + chr1.1:80396288-80396307 MS.gene93134:CDS 55.0%
TCTTCTGCCACGTGTGCAGT+CGG + chr1.1:80395593-80395612 MS.gene93134:CDS 55.0%
TTAGAGGGAACCCGAAACCC+TGG - chr1.1:80395952-80395971 None:intergenic 55.0%
! GGTAACAGTACCGTTGGTGG+TGG + chr1.1:80396345-80396364 MS.gene93134:CDS 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG + chr1.1:80396348-80396367 MS.gene93134:CDS 55.0%
ACCACCACCACCACCACCAA+CGG - chr1.1:80396358-80396377 None:intergenic 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG - chr1.1:80395824-80395843 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG + chr1.1:80395547-80395566 MS.gene93134:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG - chr1.1:80395990-80396009 None:intergenic 60.0%
CACCGTTACCATCCCTACCC+CGG - chr1.1:80396299-80396318 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG + chr1.1:80396038-80396057 MS.gene93134:CDS 60.0%
GGCGGTGTGCCGTAACGATT+CGG - chr1.1:80396039-80396058 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG - chr1.1:80395894-80395913 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG + chr1.1:80395976-80395995 MS.gene93134:CDS 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG + chr1.1:80396303-80396322 MS.gene93134:CDS 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG + chr1.1:80396351-80396370 MS.gene93134:CDS 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG + chr1.1:80396304-80396323 MS.gene93134:CDS 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG + chr1.1:80396310-80396329 MS.gene93134:CDS 60.0%
ACAGCCTCTTTCGACGCCGG+CGG - chr1.1:80396057-80396076 None:intergenic 65.0%
ATCGGAATCGGGTCGGGTCC+TGG - chr1.1:80395830-80395849 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG + chr1.1:80395883-80395902 MS.gene93134:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG + chr1.1:80396378-80396397 MS.gene93134:CDS 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG + chr1.1:80396354-80396373 MS.gene93134:CDS 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG + chr1.1:80396297-80396316 MS.gene93134:CDS 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG + chr1.1:80396384-80396403 MS.gene93134:CDS 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG + chr1.1:80396381-80396400 MS.gene93134:CDS 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG + chr1.1:80396375-80396394 MS.gene93134:CDS 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG + chr1.1:80396372-80396391 MS.gene93134:CDS 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG + chr1.1:80396357-80396376 MS.gene93134:CDS 65.0%
! CACACCGCCGGCGTCGAAAG+AGG + chr1.1:80396050-80396069 MS.gene93134:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG + chr1.1:80395550-80395569 MS.gene93134:CDS 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr1.1:80396360-80396379 MS.gene93134:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG + chr1.1:80395553-80395572 MS.gene93134:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG + chr1.1:80395562-80395581 MS.gene93134:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG + chr1.1:80395556-80395575 MS.gene93134:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG + chr1.1:80395559-80395578 MS.gene93134:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 80395547 80396524 80395547 ID=MS.gene93134
chr1.1 mRNA 80395547 80396524 80395547 ID=MS.gene93134.t1;Parent=MS.gene93134
chr1.1 exon 80395547 80396524 80395547 ID=MS.gene93134.t1.exon1;Parent=MS.gene93134.t1
chr1.1 CDS 80395547 80396524 80395547 ID=cds.MS.gene93134.t1;Parent=MS.gene93134.t1
Gene Sequence

>MS.gene93134

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA
Protein sequence

>MS.gene93134.t1

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDDCLLPWLELHNSCPVCRHELPTDDADYENRGRDGNGGDGLRSVVGGNSTVGGGGGGGGGSSGGGGGNRPVHRTFRISLRYPFGSDDSAQDSGERGFGNRQEDLD