AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029216

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029216.t1 MTR_1g114320 95.753 259 8 1 1 259 1 256 0.0 513
MS.gene029216.t1 MTR_6g079660 46.691 272 113 4 14 253 20 291 5.95e-63 207
MS.gene029216.t1 MTR_3g068005 36.759 253 120 8 16 244 7 243 9.21e-40 146
MS.gene029216.t1 MTR_3g083480 54.098 122 46 2 143 260 189 304 3.31e-38 141
MS.gene029216.t1 MTR_2g097620 31.111 270 150 9 16 272 14 260 2.86e-35 133
MS.gene029216.t1 MTR_4g064570 34.156 243 120 8 16 244 12 228 4.82e-35 133
MS.gene029216.t1 MTR_3g072630 30.483 269 129 11 14 243 18 267 4.76e-31 121
MS.gene029216.t1 MTR_3g072630 30.483 269 129 11 14 243 18 267 8.98e-31 120
MS.gene029216.t1 MTR_1g114620 47.328 131 61 3 122 251 195 318 1.40e-30 120
MS.gene029216.t1 MTR_5g088720 31.660 259 131 9 13 242 9 250 2.63e-30 119
MS.gene029216.t1 MTR_5g088720 31.660 259 131 9 13 242 4 245 3.45e-30 119
MS.gene029216.t1 MTR_5g088720 46.903 113 57 2 130 242 182 291 4.81e-30 119
MS.gene029216.t1 MTR_1g051105 46.789 109 55 2 142 250 107 212 2.38e-29 115
MS.gene029216.t1 MTR_7g074170 48.624 109 56 0 141 249 289 397 4.07e-29 119
MS.gene029216.t1 MTR_5g080350 29.555 247 123 4 34 250 21 246 4.18e-29 117
MS.gene029216.t1 MTR_4g110100 47.059 119 60 1 133 251 299 414 3.30e-27 112
MS.gene029216.t1 MTR_0067s0100 43.697 119 62 3 141 258 138 252 2.15e-26 107
MS.gene029216.t1 MTR_6g032960 40.323 124 62 3 143 260 186 303 3.79e-25 105
MS.gene029216.t1 MTR_6g016350 41.606 137 75 1 113 249 232 363 8.58e-23 99.4
MS.gene029216.t1 MTR_1g014710 39.623 106 62 1 147 250 181 286 3.18e-21 93.6
MS.gene029216.t1 MTR_2g007340 56.923 65 27 1 177 241 182 245 8.82e-20 89.7
MS.gene029216.t1 MTR_3g088080 46.575 73 36 1 171 243 15 84 1.97e-19 82.8
MS.gene029216.t1 MTR_5g041330 37.374 99 56 2 149 247 63 155 2.50e-19 86.3
MS.gene029216.t1 MTR_5g041310 38.384 99 55 2 149 247 73 165 4.99e-19 85.5
MS.gene029216.t1 MTR_3g025510 28.571 119 75 3 129 241 35 149 3.50e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029216.t1 AT3G19950 55.160 281 85 9 1 251 59 328 1.43e-93 286
MS.gene029216.t1 AT3G19950 55.160 281 85 9 1 251 59 328 1.43e-93 286
MS.gene029216.t1 AT3G19950 55.160 281 85 9 1 251 1 270 3.40e-93 283
MS.gene029216.t1 AT1G55530 64.220 109 32 2 139 246 170 272 3.30e-42 152
MS.gene029216.t1 AT1G55530 64.220 109 32 2 139 246 170 272 3.30e-42 152
MS.gene029216.t1 AT1G55530 64.762 105 31 1 142 246 141 239 5.90e-42 150
MS.gene029216.t1 AT3G13430 37.374 297 124 12 16 261 9 294 6.35e-42 150
MS.gene029216.t1 AT3G13430 37.374 297 124 12 16 261 9 294 6.35e-42 150
MS.gene029216.t1 AT3G13430 37.374 297 124 12 16 261 9 294 6.35e-42 150
MS.gene029216.t1 AT3G13430 37.374 297 124 12 16 261 9 294 6.35e-42 150
MS.gene029216.t1 AT5G56340 46.386 166 75 3 130 293 198 351 1.72e-38 143
MS.gene029216.t1 AT4G26400 51.327 113 49 1 141 253 191 297 1.75e-34 131
MS.gene029216.t1 AT4G26400 51.327 113 49 1 141 253 191 297 1.75e-34 131
MS.gene029216.t1 AT2G40830 33.200 250 142 7 17 253 9 246 3.32e-34 130
MS.gene029216.t1 AT2G40830 33.200 250 142 7 17 253 9 246 3.32e-34 130
MS.gene029216.t1 AT2G40830 33.200 250 142 7 17 253 9 246 3.32e-34 130
MS.gene029216.t1 AT2G40830 33.200 250 142 7 17 253 9 246 3.32e-34 130
MS.gene029216.t1 AT3G46620 31.250 256 137 8 16 250 31 268 4.12e-34 131
MS.gene029216.t1 AT3G56580 35.146 239 126 7 17 242 9 231 4.00e-33 127
MS.gene029216.t1 AT3G56580 35.146 239 126 7 17 242 9 231 4.00e-33 127
MS.gene029216.t1 AT3G56580 35.146 239 126 7 17 242 9 231 4.00e-33 127
MS.gene029216.t1 AT5G59550 43.066 137 71 3 125 255 122 257 3.63e-32 126
MS.gene029216.t1 AT5G59550 43.066 137 71 3 125 255 227 362 9.72e-32 126
MS.gene029216.t1 AT2G39720 31.727 249 146 8 16 245 6 249 1.76e-30 121
MS.gene029216.t1 AT2G39720 31.727 249 146 8 16 245 6 249 1.76e-30 121
MS.gene029216.t1 AT1G60360 29.617 287 150 10 6 255 11 282 5.86e-30 118
MS.gene029216.t1 AT5G01980 47.414 116 60 1 141 256 295 409 1.17e-29 120
MS.gene029216.t1 AT5G15820 45.872 109 59 0 145 253 239 347 4.20e-27 110
MS.gene029216.t1 AT5G08139 45.000 100 55 0 152 251 264 363 2.47e-24 103
MS.gene029216.t1 AT3G02340 42.268 97 56 0 153 249 291 387 1.44e-22 99.0
MS.gene029216.t1 AT3G02340 42.268 97 56 0 153 249 291 387 1.44e-22 99.0
MS.gene029216.t1 AT5G20910 48.810 84 41 1 169 250 200 283 2.35e-22 97.1
MS.gene029216.t1 AT3G10815 46.237 93 48 2 152 244 78 168 3.92e-21 90.9
MS.gene029216.t1 AT5G64920 43.802 121 62 3 138 253 194 313 2.27e-20 91.7
MS.gene029216.t1 AT1G26800 37.736 106 58 3 150 255 73 170 5.35e-18 82.4
MS.gene029216.t1 AT5G60820 46.250 80 40 2 168 244 340 419 2.86e-17 83.6
MS.gene029216.t1 AT1G68180 34.513 113 67 3 168 274 110 221 6.22e-17 80.1
MS.gene029216.t1 AT1G14200 39.506 81 48 1 162 242 75 154 6.88e-16 75.9
MS.gene029216.t1 AT3G60080 43.243 74 35 1 177 243 142 215 1.36e-15 77.4
MS.gene029216.t1 AT2G44330 30.469 128 77 3 122 243 21 142 3.64e-14 70.9
MS.gene029216.t1 AT5G02750 49.020 51 26 0 196 246 213 263 7.29e-13 68.9
MS.gene029216.t1 AT2G29840 37.895 95 57 2 152 245 199 292 1.19e-12 68.6
MS.gene029216.t1 AT1G18770 39.474 76 45 1 167 242 30 104 1.74e-12 63.9
MS.gene029216.t1 AT1G18760 34.940 83 52 1 163 245 143 223 1.11e-11 64.7
MS.gene029216.t1 AT2G03000 40.845 71 36 2 171 241 461 525 5.57e-11 64.7

Find 127 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 1.2:+84197557 MS.gene029216:CDS
TTGTTTCTGCAGGTATTATT+TGG 0.229859 1.2:+84199040 MS.gene029216:intron
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 1.2:-84197274 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 1.2:-84197325 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 1.2:+84197558 MS.gene029216:CDS
TATTATTTGGTGTTTGAAAC+TGG 0.268393 1.2:+84199053 MS.gene029216:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 1.2:+84197428 MS.gene029216:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 1.2:+84198110 MS.gene029216:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 1.2:+84198090 MS.gene029216:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 1.2:+84197154 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 1.2:+84198097 MS.gene029216:CDS
ATATCTCTGCGGTATCCTTT+TGG 0.328546 1.2:+84198048 MS.gene029216:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 1.2:-84197426 None:intergenic
GGCAATTCATGTCGACAAAC+AGG 0.344933 1.2:-84197868 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 1.2:-84197446 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 1.2:+84197595 MS.gene029216:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 1.2:+84197574 MS.gene029216:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 1.2:+84197178 MS.gene029216:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 1.2:+84197268 MS.gene029216:CDS
TGCTCAGGACTCTGGTGAAA+GGG 0.401420 1.2:+84198083 MS.gene029216:CDS
ATGATGATTGCTTGCTTCCA+TGG 0.401701 1.2:+84197824 MS.gene029216:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 1.2:-84197273 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 1.2:-84197324 None:intergenic
CCTCGTGACCTATGGCTCTT+CGG 0.423873 1.2:-84199904 None:intergenic
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 1.2:+84197181 MS.gene029216:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 1.2:-84197655 None:intergenic
TGGTTCAGATGACTCTGCTC+AGG 0.429490 1.2:+84198068 MS.gene029216:CDS
GTTAGGGTTAGGGTTAGGTT+CGG 0.433893 1.2:-84197314 None:intergenic
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 1.2:+84197172 MS.gene029216:CDS
GGAATGGGAATTGTAGTAGA+TGG 0.440627 1.2:+84199856 MS.gene029216:CDS
TTAGGGTTAGGGTTAGGTTC+GGG 0.443732 1.2:-84197313 None:intergenic
GAAGGGATGGAATGGAAATT+CGG 0.445340 1.2:-84197386 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 1.2:+84197550 MS.gene029216:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 1.2:+84197175 MS.gene029216:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 1.2:+84197589 MS.gene029216:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 1.2:-84197584 None:intergenic
ATGATGCTGATTATGAGAAC+CGG 0.453554 1.2:+84197896 MS.gene029216:CDS
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 1.2:-84197417 None:intergenic
GAATCAATGTGCTGTTTGTC+AGG 0.459494 1.2:+84197747 MS.gene029216:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 1.2:-84197440 None:intergenic
ATCACGTTAGGGTTAGGGTT+AGG 0.462218 1.2:-84197319 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 1.2:-84197331 None:intergenic
GGGGTCGAAACTATCGGAAT+CGG 0.469880 1.2:-84197458 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 1.2:+84197763 MS.gene029216:CDS
TTAGCAAGGATCACGGGAAT+GGG 0.479122 1.2:+84199841 MS.gene029216:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 1.2:-84197374 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 1.2:+84197646 MS.gene029216:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 1.2:-84197404 None:intergenic
GATGACTCTGCTCAGGACTC+TGG 0.494585 1.2:+84198075 MS.gene029216:CDS
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 1.2:+84197163 None:intergenic
TTCAGAATCATCGTCGGTGC+AGG 0.495095 1.2:-84197242 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 1.2:-84197265 None:intergenic
CTGCTCAGGACTCTGGTGAA+AGG 0.499574 1.2:+84198082 MS.gene029216:CDS
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 1.2:-84197418 None:intergenic
ATTAGCAAGGATCACGGGAA+TGG 0.501441 1.2:+84199840 MS.gene029216:CDS
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 1.2:-84197399 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 1.2:+84197169 MS.gene029216:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 1.2:+84197669 MS.gene029216:CDS
CAATGCAAGTAAAATATTCA+CGG 0.511276 1.2:-84199103 None:intergenic
GAAACTATCGGAATCGGGTC+GGG 0.511848 1.2:-84197452 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 1.2:-84197403 None:intergenic
TCATGATAAACATGCTTACA+AGG 0.513615 1.2:-84197805 None:intergenic
GCAGAGTCATCTGAACCAAA+AGG 0.515275 1.2:-84198063 None:intergenic
CACATTCTTCGAGAAAACCT+TGG 0.516574 1.2:-84197285 None:intergenic
AGAAGCATCCTCGTGACCTA+TGG 0.520134 1.2:-84199912 None:intergenic
TGACGATGCGTTGTTGAACT+CGG 0.520208 1.2:+84197720 MS.gene029216:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 1.2:-84197518 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 1.2:-84197464 None:intergenic
CTCCCATGAGCTGCAAAAGA+TGG 0.526261 1.2:-84199079 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 1.2:+84197212 MS.gene029216:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 1.2:-84197510 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 1.2:-84197394 None:intergenic
GAATTGTAGTAGATGGAGGA+TGG 0.534368 1.2:+84199863 MS.gene029216:CDS
TCATGCATTAAAGATGAGAA+TGG 0.534711 1.2:-84199980 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 1.2:-84197354 None:intergenic
ATTGTAGTAGATGGAGGATG+GGG 0.544602 1.2:+84199865 MS.gene029216:CDS
GGGTCGAAACTATCGGAATC+GGG 0.544986 1.2:-84197457 None:intergenic
ATTATTTGGTGTTTGAAACT+GGG 0.545468 1.2:+84199054 MS.gene029216:CDS
ATTCTGAAAGTTCTGTGGAC+AGG 0.545677 1.2:-84198027 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 1.2:+84197166 MS.gene029216:CDS
CTGATTATGAGAACCGGGGT+AGG 0.547933 1.2:+84197902 MS.gene029216:CDS
TATGAGAACCGGGGTAGGGA+TGG 0.558385 1.2:+84197907 MS.gene029216:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 1.2:-84197453 None:intergenic
AATTGTAGTAGATGGAGGAT+GGG 0.568457 1.2:+84199864 MS.gene029216:CDS
ATGGGAATTGTAGTAGATGG+AGG 0.570891 1.2:+84199859 MS.gene029216:CDS
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 1.2:-84197673 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 1.2:-84197478 None:intergenic
AGAGAATTAGCAAGGATCAC+GGG 0.574227 1.2:+84199835 MS.gene029216:CDS
GTACGAGACCGAAGAGCCAT+AGG 0.579067 1.2:+84199896 MS.gene029216:CDS
GAATCGTTACGGCACACCGC+CGG 0.579890 1.2:+84197657 MS.gene029216:CDS
GAGTTATGCAATTCAAGCCA+TGG 0.582250 1.2:-84197841 None:intergenic
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 1.2:-84197583 None:intergenic
GCTCAGGACTCTGGTGAAAG+GGG 0.588802 1.2:+84198084 MS.gene029216:CDS
GCAATTGATTCAGCAGCTTG+CGG 0.589049 1.2:+84197624 MS.gene029216:CDS
GAGAGAATTAGCAAGGATCA+CGG 0.591101 1.2:+84199834 MS.gene029216:CDS
TGATTATGAGAACCGGGGTA+GGG 0.593107 1.2:+84197903 MS.gene029216:CDS
TTAACAGCCTCTTTCGACGC+CGG 0.593234 1.2:-84197676 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 1.2:-84197330 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 1.2:+84197487 MS.gene029216:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 1.2:+84197502 MS.gene029216:CDS
TCATAATCAGCATCATCAGT+AGG 0.603013 1.2:-84197889 None:intergenic
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 1.2:-84197479 None:intergenic
CAGAGACCATAAAACAGCAT+AGG 0.605143 1.2:-84199947 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 1.2:+84197551 MS.gene029216:CDS
CACCGTTACCATCCCTACCC+CGG 0.609569 1.2:-84197915 None:intergenic
TGATGCTGATTATGAGAACC+GGG 0.618591 1.2:+84197897 MS.gene029216:CDS
GAGATATTCTGAAAGTTCTG+TGG 0.618924 1.2:-84198032 None:intergenic
GGCCGTTGAGATGATTCTGA+AGG 0.619045 1.2:-84197489 None:intergenic
GTTCAACAACGCATCGTCAA+CGG 0.621380 1.2:-84197716 None:intergenic
TTAGAGGGAACCCGAAACCC+TGG 0.623256 1.2:-84197568 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 1.2:-84197219 None:intergenic
CCGAAGAGCCATAGGTCACG+AGG 0.630776 1.2:+84199904 MS.gene029216:CDS
GCAATTCATGTCGACAAACA+GGG 0.630959 1.2:-84197867 None:intergenic
GCATCAAGAGAGAATTAGCA+AGG 0.641280 1.2:+84199827 MS.gene029216:CDS
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 1.2:+84197690 MS.gene029216:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 1.2:-84197591 None:intergenic
AACCCTGGTTCAGATTCAGA+AGG 0.650452 1.2:-84197553 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 1.2:-84197371 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 1.2:+84197771 MS.gene029216:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 1.2:-84197345 None:intergenic
GCATCGTCAACGGTCACCGT+CGG 0.669291 1.2:-84197706 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 1.2:-84197248 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 1.2:+84197157 None:intergenic
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 1.2:-84197477 None:intergenic
GAACTTTCAGAATATCTCTG+CGG 0.750243 1.2:+84198037 MS.gene029216:CDS
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 1.2:-84197606 None:intergenic
GATGCTGATTATGAGAACCG+GGG 0.800968 1.2:+84197898 MS.gene029216:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTAGTTTAATTGATT+AGG + chr1.2:84199467-84199486 MS.gene029216:intron 10.0%
!! ATCAATTAAACTAAATTTAC+TGG - chr1.2:84199466-84199485 None:intergenic 15.0%
!! AAAAAATTCAATTTACACTG+GGG - chr1.2:84198687-84198706 None:intergenic 20.0%
!! AATAATCAACTCAATAATCA+TGG - chr1.2:84198750-84198769 None:intergenic 20.0%
!! ATAATCAACTCAATAATCAT+GGG - chr1.2:84198749-84198768 None:intergenic 20.0%
!! CAAAAAATTCAATTTACACT+GGG - chr1.2:84198688-84198707 None:intergenic 20.0%
!!! AGATACATTATGTTTTGATT+AGG + chr1.2:84198224-84198243 MS.gene029216:intron 20.0%
!!! TCCTTTCTTTGTTTTATTTA+AGG + chr1.2:84198942-84198961 MS.gene029216:intron 20.0%
!!! TTATGTTTTGATTAGGATTT+AGG + chr1.2:84198231-84198250 MS.gene029216:intron 20.0%
!!! TTTTATTTAAGGCAAATGAA+GGG + chr1.2:84198953-84198972 MS.gene029216:intron 20.0%
!!! TTTTCTTTGATCATTTTTGT+TGG + chr1.2:84198643-84198662 MS.gene029216:intron 20.0%
! AAAGTTGTAAGTATCTAGAT+AGG + chr1.2:84198137-84198156 MS.gene029216:intron 25.0%
! AATAATTAGATGAGAAAGAG+AGG - chr1.2:84199754-84199773 None:intergenic 25.0%
! AATTGATTAGGAAACACAAA+TGG + chr1.2:84199479-84199498 MS.gene029216:intron 25.0%
! ACAATCAACATTGAATGATT+GGG - chr1.2:84199319-84199338 None:intergenic 25.0%
! ACATGAGTTAGTGAATTAAA+AGG + chr1.2:84198994-84199013 MS.gene029216:intron 25.0%
! CAAAAAATAAGAGCAGATAA+AGG - chr1.2:84199345-84199364 None:intergenic 25.0%
! CAATGCAAGTAAAATATTCA+CGG - chr1.2:84199106-84199125 None:intergenic 25.0%
! GCAAAAAATTCAATTTACAC+TGG - chr1.2:84198689-84198708 None:intergenic 25.0%
! GCCTTAAATAAAACAAAGAA+AGG - chr1.2:84198946-84198965 None:intergenic 25.0%
! GGAAAATGACTGATATAATA+TGG + chr1.2:84198305-84198324 MS.gene029216:intron 25.0%
! TAAATATTGTGTTTGAGCAA+TGG + chr1.2:84198281-84198300 MS.gene029216:intron 25.0%
! TAATTGAAAAGTAAGTGATC+TGG + chr1.2:84199616-84199635 MS.gene029216:intron 25.0%
! TAGTAACTTTGTCCAATTAA+AGG + chr1.2:84199171-84199190 MS.gene029216:intron 25.0%
! TGTTTATAGATGTTCTTGTA+AGG + chr1.2:84199129-84199148 MS.gene029216:intron 25.0%
!! TTATTTCTTATCTCCTTTGT+TGG + chr1.2:84199769-84199788 MS.gene029216:intron 25.0%
!!! AGTACAGTTTTTGAGATTTT+AGG + chr1.2:84199239-84199258 MS.gene029216:intron 25.0%
!!! ATTATTTGGTGTTTGAAACT+GGG + chr1.2:84199054-84199073 MS.gene029216:CDS 25.0%
!!! ATTCAAATAATTGTTTCTGC+AGG + chr1.2:84199030-84199049 MS.gene029216:intron 25.0%
!!! GATTGAATCTTTTGTTTGTT+TGG + chr1.2:84198371-84198390 MS.gene029216:intron 25.0%
!!! GTTTTATTTAAGGCAAATGA+AGG + chr1.2:84198952-84198971 MS.gene029216:intron 25.0%
!!! TATTATTTGGTGTTTGAAAC+TGG + chr1.2:84199053-84199072 MS.gene029216:CDS 25.0%
AAGCAGAATTAAGGAGTAAT+GGG - chr1.2:84197420-84197439 None:intergenic 30.0%
AATTCGACACAACAATGATT+AGG + chr1.2:84198349-84198368 MS.gene029216:intron 30.0%
ATCTAGTGATAGATGGAATA+TGG + chr1.2:84199205-84199224 MS.gene029216:intron 30.0%
ATGCTTAGTTATCAAGTTCT+GGG + chr1.2:84198873-84198892 MS.gene029216:intron 30.0%
CAATCAACATTGAATGATTG+GGG - chr1.2:84199318-84199337 None:intergenic 30.0%
CACATAAAACCAACTTAAGA+AGG - chr1.2:84198170-84198189 None:intergenic 30.0%
CTCAAACACAATATTTATGC+CGG - chr1.2:84198278-84198297 None:intergenic 30.0%
GACAATCAACATTGAATGAT+TGG - chr1.2:84199320-84199339 None:intergenic 30.0%
GGTATTAATCCTTCTTAAGT+TGG + chr1.2:84198158-84198177 MS.gene029216:intron 30.0%
GTTAAAATAATCACCCACAA+TGG - chr1.2:84199582-84199601 None:intergenic 30.0%
GTTGAACTAGTCATTGTATT+AGG + chr1.2:84199369-84199388 MS.gene029216:intron 30.0%
TAAGGATATATTGTCATCCT+CGG + chr1.2:84199147-84199166 MS.gene029216:intron 30.0%
TATGCTTAGTTATCAAGTTC+TGG + chr1.2:84198872-84198891 MS.gene029216:intron 30.0%
TATTCCATCTATCACTAGAT+TGG - chr1.2:84199205-84199224 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG - chr1.2:84197808-84197827 None:intergenic 30.0%
TCATGCATTAAAGATGAGAA+TGG - chr1.2:84199983-84200002 None:intergenic 30.0%
TTATCGTTTATAGACTCTCT+TGG + chr1.2:84198616-84198635 MS.gene029216:intron 30.0%
TTGGAAAAACGACCTTTAAT+TGG - chr1.2:84199186-84199205 None:intergenic 30.0%
TTTGATTAGGATTTAGGAGT+AGG + chr1.2:84198237-84198256 MS.gene029216:intron 30.0%
! ATTAGTTTCTGCGTTTAAGA+TGG + chr1.2:84199546-84199565 MS.gene029216:intron 30.0%
! CATTGTATTAGGTTGCAATT+TGG + chr1.2:84199380-84199399 MS.gene029216:intron 30.0%
! TAGTGCTGTTAAAAAGTCTT+TGG + chr1.2:84198542-84198561 MS.gene029216:intron 30.0%
! TGAGTGCTGTTAATATTATG+CGG + chr1.2:84198476-84198495 MS.gene029216:intron 30.0%
! TTTTCCAATCTAGTGATAGA+TGG + chr1.2:84199198-84199217 MS.gene029216:intron 30.0%
!! TTGTTTCTGCAGGTATTATT+TGG + chr1.2:84199040-84199059 MS.gene029216:intron 30.0%
AAATTCAATTTACACTGGGG+AGG - chr1.2:84198684-84198703 None:intergenic 35.0%
AATTGTAGTAGATGGAGGAT+GGG + chr1.2:84199864-84199883 MS.gene029216:CDS 35.0%
ACCATCAACAACAATAGTTC+TGG - chr1.2:84199683-84199702 None:intergenic 35.0%
AGAAAACCTTGGAAGCAAAT+TGG - chr1.2:84197277-84197296 None:intergenic 35.0%
AGAGTAACAAAGCACATCAT+TGG - chr1.2:84198453-84198472 None:intergenic 35.0%
ATATTGTGTTTGAGCAATGG+TGG + chr1.2:84198284-84198303 MS.gene029216:intron 35.0%
ATTAGGATTTAGGAGTAGGT+AGG + chr1.2:84198241-84198260 MS.gene029216:intron 35.0%
CAAACTTGGTCAATTTCAAG+AGG + chr1.2:84199650-84199669 MS.gene029216:intron 35.0%
GAAAACCTTGGAAGCAAATT+GGG - chr1.2:84197276-84197295 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG + chr1.2:84198037-84198056 MS.gene029216:CDS 35.0%
GAAGCAGAATTAAGGAGTAA+TGG - chr1.2:84197421-84197440 None:intergenic 35.0%
GGATCACTCATTTATCATCA+CGG - chr1.2:84199445-84199464 None:intergenic 35.0%
TAAGTAGGATATCTGATGAG+TGG + chr1.2:84199717-84199736 MS.gene029216:intron 35.0%
TCATAATCAGCATCATCAGT+AGG - chr1.2:84197892-84197911 None:intergenic 35.0%
TGAAAATCTGCTATGAACAC+CGG - chr1.2:84199274-84199293 None:intergenic 35.0%
TGGAAATAGGCAAGAAGATT+TGG + chr1.2:84198110-84198129 MS.gene029216:CDS 35.0%
TGGAAATTCGGAATCTGAAT+CGG - chr1.2:84197377-84197396 None:intergenic 35.0%
TTAGGATTTAGGAGTAGGTA+GGG + chr1.2:84198242-84198261 MS.gene029216:intron 35.0%
TTCCTTCAGAATCATCTCAA+CGG + chr1.2:84197487-84197506 MS.gene029216:CDS 35.0%
TTGTAGATGCTATGCTAAGT+AGG + chr1.2:84199702-84199721 MS.gene029216:intron 35.0%
! AGGTTGCAATTTGGAATCAT+TGG + chr1.2:84199389-84199408 MS.gene029216:intron 35.0%
! AGTGCATCTGAGATTTGAAT+CGG + chr1.2:84198843-84198862 MS.gene029216:intron 35.0%
! ATGATGCTGATTATGAGAAC+CGG + chr1.2:84197896-84197915 MS.gene029216:CDS 35.0%
! GAGATATTCTGAAAGTTCTG+TGG - chr1.2:84198035-84198054 None:intergenic 35.0%
! TTTCTGCGTTTAAGATGGAT+CGG + chr1.2:84199551-84199570 MS.gene029216:intron 35.0%
!! AGATTTTAGGTATTGCTGTC+CGG + chr1.2:84199252-84199271 MS.gene029216:intron 35.0%
!! CTGGGTATTTGCTTTATTTC+TGG + chr1.2:84198891-84198910 MS.gene029216:intron 35.0%
!! TGGATTAGTGTCTTCAAACT+TGG + chr1.2:84199636-84199655 MS.gene029216:intron 35.0%
!!! ACAAATGGTGAGTTTTTTCG+TGG + chr1.2:84199494-84199513 MS.gene029216:intron 35.0%
!!! GAGTTTTTTCGTGGTGAAAA+TGG + chr1.2:84199503-84199522 MS.gene029216:intron 35.0%
!!! GTGGGTGATTATTTTAACAG+TGG + chr1.2:84199584-84199603 MS.gene029216:intron 35.0%
!!! TAGGTTCCTATGCTGTTTTA+TGG + chr1.2:84199941-84199960 MS.gene029216:CDS 35.0%
AAATTCGGAATCTGAATCGG+AGG - chr1.2:84197374-84197393 None:intergenic 40.0%
AAGTAATCGCCAAGGTTAGA+GGG - chr1.2:84197586-84197605 None:intergenic 40.0%
AGAGAATTAGCAAGGATCAC+GGG + chr1.2:84199835-84199854 MS.gene029216:CDS 40.0%
ATCCTTCTGAATCTGAACCA+GGG + chr1.2:84197551-84197570 MS.gene029216:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG + chr1.2:84197824-84197843 MS.gene029216:CDS 40.0%
ATGGGAATTGTAGTAGATGG+AGG + chr1.2:84199859-84199878 MS.gene029216:CDS 40.0%
ATTGTAGTAGATGGAGGATG+GGG + chr1.2:84199865-84199884 MS.gene029216:CDS 40.0%
CACATTCTTCGAGAAAACCT+TGG - chr1.2:84197288-84197307 None:intergenic 40.0%
CAGAGACCATAAAACAGCAT+AGG - chr1.2:84199950-84199969 None:intergenic 40.0%
GAAAGGTTCAGAATCATCGT+CGG - chr1.2:84197251-84197270 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG - chr1.2:84197389-84197408 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG - chr1.2:84197521-84197540 None:intergenic 40.0%
GAATTGTAGTAGATGGAGGA+TGG + chr1.2:84199863-84199882 MS.gene029216:CDS 40.0%
GAGAATGATCCGAATCGTTA+CGG + chr1.2:84197646-84197665 MS.gene029216:CDS 40.0%
GAGAGAATTAGCAAGGATCA+CGG + chr1.2:84199834-84199853 MS.gene029216:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG - chr1.2:84197844-84197863 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG - chr1.2:84197870-84197889 None:intergenic 40.0%
GCATCAAGAGAGAATTAGCA+AGG + chr1.2:84199827-84199846 MS.gene029216:CDS 40.0%
GGAAAATCACGTTAGGGTTA+GGG - chr1.2:84197327-84197346 None:intergenic 40.0%
GGAATGGGAATTGTAGTAGA+TGG + chr1.2:84199856-84199875 MS.gene029216:CDS 40.0%
GGTTTCTGTTTGGCATGAAT+TGG + chr1.2:84199790-84199809 MS.gene029216:intron 40.0%
GTGAAAGGGGATTTGGAAAT+AGG + chr1.2:84198097-84198116 MS.gene029216:CDS 40.0%
GTTGTGTCGAATTGAAACCA+TGG - chr1.2:84198342-84198361 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG - chr1.2:84197333-84197352 None:intergenic 40.0%
TGCCAAACAGAAACCAACAA+AGG - chr1.2:84199785-84199804 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG - chr1.2:84197429-84197448 None:intergenic 40.0%
TGTCAGGATGAGTTTGAGAA+AGG + chr1.2:84197763-84197782 MS.gene029216:CDS 40.0%
TTAATTCTGCTTCCGTTTCC+AGG + chr1.2:84197428-84197447 MS.gene029216:CDS 40.0%
TTAGGAGTAGGTAGGGTTAT+GGG + chr1.2:84198249-84198268 MS.gene029216:intron 40.0%
TTGAAGCGGAAAATCACGTT+AGG - chr1.2:84197334-84197353 None:intergenic 40.0%
TTTAGGAGTAGGTAGGGTTA+TGG + chr1.2:84198248-84198267 MS.gene029216:intron 40.0%
! AACCATCTTTTGCAGCTCAT+GGG + chr1.2:84199077-84199096 MS.gene029216:CDS 40.0%
! ATATCTCTGCGGTATCCTTT+TGG + chr1.2:84198048-84198067 MS.gene029216:CDS 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG - chr1.2:84197482-84197501 None:intergenic 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG - chr1.2:84198030-84198049 None:intergenic 40.0%
! GCCAGAACTATTGTTGTTGA+TGG + chr1.2:84199679-84199698 MS.gene029216:intron 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG + chr1.2:84197771-84197790 MS.gene029216:CDS 40.0%
! TGATGCTGATTATGAGAACC+GGG + chr1.2:84197897-84197916 MS.gene029216:CDS 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG - chr1.2:84197481-84197500 None:intergenic 40.0%
! TTCTGCGTTTAAGATGGATC+GGG + chr1.2:84199552-84199571 MS.gene029216:intron 40.0%
!! CTCCTTTGTTGGTTTCTGTT+TGG + chr1.2:84199780-84199799 MS.gene029216:intron 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG + chr1.2:84197747-84197766 MS.gene029216:CDS 40.0%
!!! CGAGGATGCTTCTTTGTTTT+AGG + chr1.2:84199922-84199941 MS.gene029216:CDS 40.0%
AACCCTGGTTCAGATTCAGA+AGG - chr1.2:84197556-84197575 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG + chr1.2:84197589-84197608 MS.gene029216:CDS 45.0%
ATCACGTTAGGGTTAGGGTT+AGG - chr1.2:84197322-84197341 None:intergenic 45.0%
ATTAGCAAGGATCACGGGAA+TGG + chr1.2:84199840-84199859 MS.gene029216:CDS 45.0%
CATCCTTCTGAATCTGAACC+AGG + chr1.2:84197550-84197569 MS.gene029216:CDS 45.0%
CGGAAAATCACGTTAGGGTT+AGG - chr1.2:84197328-84197347 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG + chr1.2:84197557-84197576 MS.gene029216:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG - chr1.2:84197587-84197606 None:intergenic 45.0%
GCAGAGTCATCTGAACCAAA+AGG - chr1.2:84198066-84198085 None:intergenic 45.0%
GGCAATTCATGTCGACAAAC+AGG - chr1.2:84197871-84197890 None:intergenic 45.0%
GGCTGTTAAGAATCTTCCGA+CGG + chr1.2:84197690-84197709 MS.gene029216:CDS 45.0%
GTGTCGAATTGAAACCATGG+TGG - chr1.2:84198339-84198358 None:intergenic 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG - chr1.2:84197317-84197336 None:intergenic 45.0%
GTTCAACAACGCATCGTCAA+CGG - chr1.2:84197719-84197738 None:intergenic 45.0%
TAGGAGTAGGTAGGGTTATG+GGG + chr1.2:84198250-84198269 MS.gene029216:intron 45.0%
TGAATCTGAACCAGGGTTTC+GGG + chr1.2:84197558-84197577 MS.gene029216:CDS 45.0%
TGACGATGCGTTGTTGAACT+CGG + chr1.2:84197720-84197739 MS.gene029216:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG + chr1.2:84197903-84197922 MS.gene029216:CDS 45.0%
TGGAAGCAAATTGGGCAGAA+AGG - chr1.2:84197268-84197287 None:intergenic 45.0%
TTAGCAAGGATCACGGGAAT+GGG + chr1.2:84199841-84199860 MS.gene029216:CDS 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG - chr1.2:84197316-84197335 None:intergenic 45.0%
TTGGACAAAGTTACTAGCCG+AGG - chr1.2:84199167-84199186 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG - chr1.2:84197406-84197425 None:intergenic 45.0%
! ATATGGCACTGAATCCACCA+TGG + chr1.2:84198322-84198341 MS.gene029216:intron 45.0%
! GAACCATCTTTTGCAGCTCA+TGG + chr1.2:84199076-84199095 MS.gene029216:CDS 45.0%
! GATGCTGATTATGAGAACCG+GGG + chr1.2:84197898-84197917 MS.gene029216:CDS 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG - chr1.2:84197480-84197499 None:intergenic 45.0%
! GCAATTGATTCAGCAGCTTG+CGG + chr1.2:84197624-84197643 MS.gene029216:CDS 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG + chr1.2:84197268-84197287 MS.gene029216:CDS 45.0%
!! GATCGTGATGATGGTTGAAG+CGG - chr1.2:84197348-84197367 None:intergenic 45.0%
AGAAGAGCGAAGGGATGGAA+TGG - chr1.2:84197397-84197416 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG - chr1.2:84197467-84197486 None:intergenic 50.0%
AGGAGTAGGTAGGGTTATGG+GGG + chr1.2:84198251-84198270 MS.gene029216:intron 50.0%
CGAAACTATCGGAATCGGGT+CGG - chr1.2:84197456-84197475 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG - chr1.2:84197357-84197376 None:intergenic 50.0%
CTCCCATGAGCTGCAAAAGA+TGG - chr1.2:84199082-84199101 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG + chr1.2:84197902-84197921 MS.gene029216:CDS 50.0%
GAAACTATCGGAATCGGGTC+GGG - chr1.2:84197455-84197474 None:intergenic 50.0%
GACTCTGGTGAAAGGGGATT+TGG + chr1.2:84198090-84198109 MS.gene029216:CDS 50.0%
GGCATGAATTGGTATGCCAC+AGG + chr1.2:84199801-84199820 MS.gene029216:intron 50.0%
GGCCGTTGAGATGATTCTGA+AGG - chr1.2:84197492-84197511 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG - chr1.2:84197461-84197480 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG - chr1.2:84197460-84197479 None:intergenic 50.0%
TCTCTCTTGATGCAAGCCTG+TGG - chr1.2:84199820-84199839 None:intergenic 50.0%
TGCTCAGGACTCTGGTGAAA+GGG + chr1.2:84198083-84198102 MS.gene029216:CDS 50.0%
TGGTTCAGATGACTCTGCTC+AGG + chr1.2:84198068-84198087 MS.gene029216:CDS 50.0%
TTAACAGCCTCTTTCGACGC+CGG - chr1.2:84197679-84197698 None:intergenic 50.0%
TTCAGAATCATCGTCGGTGC+AGG - chr1.2:84197245-84197264 None:intergenic 50.0%
! ATGGATCGGGTTGTCCATTG+TGG + chr1.2:84199565-84199584 MS.gene029216:intron 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG - chr1.2:84197407-84197426 None:intergenic 50.0%
! TGGATCGGGTTGTCCATTGT+GGG + chr1.2:84199566-84199585 MS.gene029216:intron 50.0%
!! AGAAGCATCCTCGTGACCTA+TGG - chr1.2:84199915-84199934 None:intergenic 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG + chr1.2:84197940-84197959 MS.gene029216:intron 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG + chr1.2:84197958-84197977 MS.gene029216:intron 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG + chr1.2:84197574-84197593 MS.gene029216:CDS 50.0%
AACCGGGGTAGGGATGGTAA+CGG + chr1.2:84197913-84197932 MS.gene029216:intron 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG - chr1.2:84197402-84197421 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG - chr1.2:84197594-84197613 None:intergenic 55.0%
CCTCGTGACCTATGGCTCTT+CGG - chr1.2:84199907-84199926 None:intergenic 55.0%
CTGCTCAGGACTCTGGTGAA+AGG + chr1.2:84198082-84198101 MS.gene029216:CDS 55.0%
GATGACTCTGCTCAGGACTC+TGG + chr1.2:84198075-84198094 MS.gene029216:CDS 55.0%
GCTCAGGACTCTGGTGAAAG+GGG + chr1.2:84198084-84198103 MS.gene029216:CDS 55.0%
GGAGTAGGTAGGGTTATGGG+GGG + chr1.2:84198252-84198271 MS.gene029216:intron 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG + chr1.2:84197943-84197962 MS.gene029216:intron 55.0%
GGTGGTAACAGTACCGTTGG+TGG + chr1.2:84197961-84197980 MS.gene029216:intron 55.0%
GTACGAGACCGAAGAGCCAT+AGG + chr1.2:84199896-84199915 MS.gene029216:CDS 55.0%
TAACTCTCCGACTGCACACG+TGG - chr1.2:84197222-84197241 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG + chr1.2:84197907-84197926 MS.gene029216:CDS 55.0%
TCTTCTGCCACGTGTGCAGT+CGG + chr1.2:84197212-84197231 MS.gene029216:CDS 55.0%
TTAGAGGGAACCCGAAACCC+TGG - chr1.2:84197571-84197590 None:intergenic 55.0%
! GGTAACAGTACCGTTGGTGG+TGG + chr1.2:84197964-84197983 MS.gene029216:intron 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG + chr1.2:84197967-84197986 MS.gene029216:intron 55.0%
ACCACCACCACCACCACCAA+CGG - chr1.2:84197977-84197996 None:intergenic 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG - chr1.2:84197443-84197462 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG + chr1.2:84197166-84197185 MS.gene029216:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG - chr1.2:84197609-84197628 None:intergenic 60.0%
CACCGTTACCATCCCTACCC+CGG - chr1.2:84197918-84197937 None:intergenic 60.0%
CCGAAGAGCCATAGGTCACG+AGG + chr1.2:84199904-84199923 MS.gene029216:CDS 60.0%
GAATCGTTACGGCACACCGC+CGG + chr1.2:84197657-84197676 MS.gene029216:CDS 60.0%
GCATCGTCAACGGTCACCGT+CGG - chr1.2:84197709-84197728 None:intergenic 60.0%
GGCGGTGTGCCGTAACGATT+CGG - chr1.2:84197658-84197677 None:intergenic 60.0%
TAGGTAGGGTTATGGGGGGC+CGG + chr1.2:84198256-84198275 MS.gene029216:intron 60.0%
TGTTTGCACCGTCGGCGTGA+AGG - chr1.2:84197513-84197532 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG + chr1.2:84197595-84197614 MS.gene029216:CDS 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG + chr1.2:84197922-84197941 MS.gene029216:intron 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG + chr1.2:84197970-84197989 MS.gene029216:intron 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG + chr1.2:84197923-84197942 MS.gene029216:intron 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG + chr1.2:84197929-84197948 MS.gene029216:intron 60.0%
ACAGCCTCTTTCGACGCCGG+CGG - chr1.2:84197676-84197695 None:intergenic 65.0%
ATCGGAATCGGGTCGGGTCC+TGG - chr1.2:84197449-84197468 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG + chr1.2:84197502-84197521 MS.gene029216:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG + chr1.2:84197991-84198010 MS.gene029216:intron 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG + chr1.2:84197973-84197992 MS.gene029216:intron 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG + chr1.2:84197916-84197935 MS.gene029216:intron 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG + chr1.2:84197997-84198016 MS.gene029216:intron 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG + chr1.2:84197994-84198013 MS.gene029216:intron 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG + chr1.2:84197988-84198007 MS.gene029216:intron 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG + chr1.2:84197985-84198004 MS.gene029216:intron 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG + chr1.2:84197976-84197995 MS.gene029216:intron 65.0%
! CACACCGCCGGCGTCGAAAG+AGG + chr1.2:84197669-84197688 MS.gene029216:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG + chr1.2:84197169-84197188 MS.gene029216:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG + chr1.2:84197172-84197191 MS.gene029216:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG + chr1.2:84197181-84197200 MS.gene029216:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG + chr1.2:84197175-84197194 MS.gene029216:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG + chr1.2:84197178-84197197 MS.gene029216:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 84197166 84200002 84197166 ID=MS.gene029216
chr1.2 mRNA 84197166 84200002 84197166 ID=MS.gene029216.t1;Parent=MS.gene029216
chr1.2 exon 84197166 84197928 84197166 ID=MS.gene029216.t1.exon1;Parent=MS.gene029216.t1
chr1.2 CDS 84197166 84197928 84197166 ID=cds.MS.gene029216.t1;Parent=MS.gene029216.t1
chr1.2 exon 84198026 84198142 84198026 ID=MS.gene029216.t1.exon2;Parent=MS.gene029216.t1
chr1.2 CDS 84198026 84198142 84198026 ID=cds.MS.gene029216.t1;Parent=MS.gene029216.t1
chr1.2 exon 84198545 84198599 84198545 ID=MS.gene029216.t1.exon3;Parent=MS.gene029216.t1
chr1.2 CDS 84198545 84198599 84198545 ID=cds.MS.gene029216.t1;Parent=MS.gene029216.t1
chr1.2 exon 84199052 84199145 84199052 ID=MS.gene029216.t1.exon4;Parent=MS.gene029216.t1
chr1.2 CDS 84199052 84199145 84199052 ID=cds.MS.gene029216.t1;Parent=MS.gene029216.t1
chr1.2 exon 84199823 84200002 84199823 ID=MS.gene029216.t1.exon5;Parent=MS.gene029216.t1
chr1.2 CDS 84199823 84200002 84199823 ID=cds.MS.gene029216.t1;Parent=MS.gene029216.t1
Gene Sequence

>MS.gene029216

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGACGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGAAAGTTGTAAGTATCTAGATAGGTATTAATCCTTCTTAAGTTGGTTTTATGTGATGATTTTAGTTGTTATTTTATAATAATCAGTTCAGATACATTATGTTTTGATTAGGATTTAGGAGTAGGTAGGGTTATGGGGGGCCGGCATAAATATTGTGTTTGAGCAATGGTGGAAAATGACTGATATAATATGGCACTGAATCCACCATGGTTTCAATTCGACACAACAATGATTAGGATTGAATCTTTTGTTTGTTTGGTGTGCAAACTTAGCATTTTGTAATAAGTACGAAATAATCAACTATATTCATTTTTGCCAATGATGTGCTTTGTTACTCTTTCTGAGTGCTGTTAATATTATGCGGATTCATTTGTCTGTTTACTTTGATTTGTTTTGATCGTATTTTTTAGTGCTGTTAAAAAGTCTTTGGATTCAGTCTTATACATTCAGTAAACGACATCAGATGTATGTTTAGTCTGTTTTATCGTTTATAGACTCTCTTGGTGTGTTTTCTTTGATCATTTTTGTTGGTTGTTCTATTACTCGCCTCCCCAGTGTAAATTGAATTTTTTGCATTCTTTTGAAGCGTCAATACTTTGCATTCTATTACTCCCATGATTATTGAGTTGATTATTGTTATACGTTTTCAAGATTATCATGTATATTCTCGTTTTGTAGTTATCTTTATATTAAGTGTTAATAAGCTGAAGTGCATCTGAGATTTGAATCGGTCTTTCTATGCTTAGTTATCAAGTTCTGGGTATTTGCTTTATTTCTGGAGTCTTGAACTTTTGTGTAAAATTGTTTTCCTTTCTTTGTTTTATTTAAGGCAAATGAAGGGCAAATGAAGAGAAATAAAACATGAGTTAGTGAATTAAAAGGAATTTAATTGAAGATTCAAATAATTGTTTCTGCAGGTATTATTTGGTGTTTGAAACTGGGAACCATCTTTTGCAGCTCATGGGAGTCCGTGAATATTTTACTTGCATTGTTATGTTTATAGATGTTCTTGTAAGGATATATTGTCATCCTCGGCTAGTAACTTTGTCCAATTAAAGGTCGTTTTTCCAATCTAGTGATAGATGGAATATGGTATTTTGTGACAGTACAGTTTTTGAGATTTTAGGTATTGCTGTCCGGTGTTCATAGCAGATTTTCACTGTTGTGTACAGATCATCTTCCCCAATCATTCAATGTTGATTGTCATCCTTTATCTGCTCTTATTTTTTGCAACGTTGAACTAGTCATTGTATTAGGTTGCAATTTGGAATCATTGGTAGTATCGATGATTGCTGAAAATCGATCAACCGTGATGATAAATGAGTGATCCAGTAAATTTAGTTTAATTGATTAGGAAACACAAATGGTGAGTTTTTTCGTGGTGAAAATGGTAGTTAGACAAAAAGTAGTAATTAGTTTCTGCGTTTAAGATGGATCGGGTTGTCCATTGTGGGTGATTATTTTAACAGTGGATTTATTAGTAATTGAAAAGTAAGTGATCTGGATTAGTGTCTTCAAACTTGGTCAATTTCAAGAGGTATCTCGCCAGAACTATTGTTGTTGATGGTTGTAGATGCTATGCTAAGTAGGATATCTGATGAGTGGATGTTTTGTCTCCTCTCTTTCTCATCTAATTATTTCTTATCTCCTTTGTTGGTTTCTGTTTGGCATGAATTGGTATGCCACAGGCTTGCATCAAGAGAGAATTAGCAAGGATCACGGGAATGGGAATTGTAGTAGATGGAGGATGGGGACGATTATGTACGAGACCGAAGAGCCATAGGTCACGAGGATGCTTCTTTGTTTTAGGTTCCTATGCTGTTTTATGGTCTCTGATTTGCTGCTCCATTCTCATCTTTAATGCATGA
Protein sequence

>MS.gene029216.t1

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDDCLLPWLELHNSCPVCRHELPTDDADYENRGRDDLSTELSEYLCGILLVQMTLLRTLVKGDLEIGKKIWIESLLLKSLWIQSYTFSKRHQMYYLVFETGNHLLQLMGVREYFTCIVMFIDVLACIKRELARITGMGIVVDGGWGRLCTRPKSHRSRGCFFVLGSYAVLWSLICCSILIFNA