AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23913.t1 MTR_1g114320 94.366 213 9 1 1 213 1 210 3.97e-145 407
MS.gene23913.t1 MTR_6g079660 40.086 232 104 5 14 210 20 251 2.12e-32 121
MS.gene23913.t1 MTR_3g083480 58.209 67 22 1 143 209 189 249 9.71e-19 84.0
MS.gene23913.t1 MTR_3g068005 30.137 219 109 9 16 208 7 207 3.09e-16 77.0
MS.gene23913.t1 MTR_4g064570 28.922 204 105 8 16 205 12 189 1.99e-14 71.6
MS.gene23913.t1 MTR_2g097620 26.471 204 124 8 16 209 14 201 1.39e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23913.t1 AT3G19950 48.560 243 84 9 1 213 1 232 1.58e-61 196
MS.gene23913.t1 AT3G19950 48.560 243 84 9 1 213 59 290 2.44e-61 197
MS.gene23913.t1 AT3G19950 48.560 243 84 9 1 213 59 290 2.44e-61 197
MS.gene23913.t1 AT1G55530 59.211 76 24 2 139 213 170 239 1.16e-21 92.0
MS.gene23913.t1 AT1G55530 59.211 76 24 2 139 213 170 239 1.16e-21 92.0
MS.gene23913.t1 AT1G55530 59.722 72 23 1 142 213 141 206 2.75e-21 90.5
MS.gene23913.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23913.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23913.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23913.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23913.t1 AT5G56340 54.878 82 23 2 128 209 204 271 2.93e-19 85.9
MS.gene23913.t1 AT4G26400 44.928 69 32 1 141 209 191 253 3.71e-14 70.9
MS.gene23913.t1 AT4G26400 44.928 69 32 1 141 209 191 253 3.71e-14 70.9
MS.gene23913.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23913.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23913.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23913.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23913.t1 AT3G56580 29.703 202 113 7 17 205 9 194 8.36e-13 67.0
MS.gene23913.t1 AT3G56580 29.703 202 113 7 17 205 9 194 8.36e-13 67.0
MS.gene23913.t1 AT3G56580 29.703 202 113 7 17 205 9 194 8.36e-13 67.0
MS.gene23913.t1 AT1G60360 26.609 233 122 9 15 213 23 240 6.39e-11 61.6

Find 88 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 1.2:+84151484 MS.gene23913:CDS
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 1.2:-84151201 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 1.2:-84151252 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 1.2:+84151485 MS.gene23913:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 1.2:+84151355 MS.gene23913:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 1.2:+84152037 MS.gene23913:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 1.2:+84152017 MS.gene23913:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 1.2:+84151081 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 1.2:+84152024 MS.gene23913:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 1.2:-84151353 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 1.2:-84151373 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 1.2:+84151522 MS.gene23913:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 1.2:+84151501 MS.gene23913:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 1.2:+84151105 MS.gene23913:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 1.2:+84151195 MS.gene23913:CDS
TGCTCAGGACTCTGGTGAAA+GGG 0.401420 1.2:+84152010 MS.gene23913:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 1.2:-84151200 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 1.2:-84151251 None:intergenic
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 1.2:+84151108 MS.gene23913:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 1.2:-84151582 None:intergenic
TGGTTCAGATGACTCTGCTC+AGG 0.429490 1.2:+84151995 MS.gene23913:intron
GTTAGGGTTAGGGTTAGGTT+CGG 0.433893 1.2:-84151241 None:intergenic
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 1.2:+84151099 MS.gene23913:CDS
TTAGGGTTAGGGTTAGGTTC+GGG 0.443732 1.2:-84151240 None:intergenic
GAAGGGATGGAATGGAAATT+CGG 0.445340 1.2:-84151313 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 1.2:+84151477 MS.gene23913:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 1.2:+84151102 MS.gene23913:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 1.2:+84151516 MS.gene23913:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 1.2:-84151511 None:intergenic
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 1.2:-84151344 None:intergenic
GAATCAATGTGCTGTTTGTC+AGG 0.459494 1.2:+84151674 MS.gene23913:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 1.2:-84151367 None:intergenic
ATCACGTTAGGGTTAGGGTT+AGG 0.462218 1.2:-84151246 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 1.2:-84151258 None:intergenic
GGGGTCGAAACTATCGGAAT+CGG 0.469880 1.2:-84151385 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 1.2:+84151690 MS.gene23913:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 1.2:-84151301 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 1.2:+84151573 MS.gene23913:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 1.2:-84151331 None:intergenic
GATGACTCTGCTCAGGACTC+TGG 0.494585 1.2:+84152002 MS.gene23913:intron
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 1.2:+84151090 None:intergenic
TTCAGAATCATCGTCGGTGC+AGG 0.495095 1.2:-84151169 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 1.2:-84151192 None:intergenic
CTGCTCAGGACTCTGGTGAA+AGG 0.499574 1.2:+84152009 MS.gene23913:CDS
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 1.2:-84151345 None:intergenic
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 1.2:-84151326 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 1.2:+84151096 MS.gene23913:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 1.2:+84151596 MS.gene23913:CDS
GAAACTATCGGAATCGGGTC+GGG 0.511848 1.2:-84151379 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 1.2:-84151330 None:intergenic
CACATTCTTCGAGAAAACCT+TGG 0.516574 1.2:-84151212 None:intergenic
TGATGATGCGTTGTTGAACT+CGG 0.517659 1.2:+84151647 MS.gene23913:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 1.2:-84151445 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 1.2:-84151391 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 1.2:+84151139 MS.gene23913:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 1.2:-84151437 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 1.2:-84151321 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 1.2:-84151281 None:intergenic
GGGTCGAAACTATCGGAATC+GGG 0.544986 1.2:-84151384 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 1.2:+84151093 MS.gene23913:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 1.2:-84151380 None:intergenic
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 1.2:-84151600 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 1.2:-84151405 None:intergenic
GAATCGTTACGGCACACCGC+CGG 0.579890 1.2:+84151584 MS.gene23913:CDS
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 1.2:-84151510 None:intergenic
GCTCAGGACTCTGGTGAAAG+GGG 0.588802 1.2:+84152011 MS.gene23913:CDS
GCAATTGATTCAGCAGCTTG+CGG 0.589049 1.2:+84151551 MS.gene23913:CDS
GTTCAACAACGCATCATCAA+CGG 0.590877 1.2:-84151643 None:intergenic
TTAACAGCCTCTTTCGACGC+CGG 0.593234 1.2:-84151603 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 1.2:-84151257 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 1.2:+84151414 MS.gene23913:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 1.2:+84151429 MS.gene23913:CDS
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 1.2:-84151406 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 1.2:+84151478 MS.gene23913:CDS
GGCCGTTGAGATGATTCTGA+AGG 0.619045 1.2:-84151416 None:intergenic
TTAGAGGGAACCCGAAACCC+TGG 0.623256 1.2:-84151495 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 1.2:-84151146 None:intergenic
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 1.2:+84151617 MS.gene23913:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 1.2:-84151518 None:intergenic
AACCCTGGTTCAGATTCAGA+AGG 0.650452 1.2:-84151480 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 1.2:-84151298 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 1.2:+84151698 MS.gene23913:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 1.2:-84151272 None:intergenic
GCATCATCAACGGTCACCGT+CGG 0.671989 1.2:-84151633 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 1.2:-84151175 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 1.2:+84151084 None:intergenic
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 1.2:-84151404 None:intergenic
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 1.2:-84151533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGCAGAATTAAGGAGTAAT+GGG - chr1.2:84151347-84151366 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG - chr1.2:84151735-84151754 None:intergenic 30.0%
AGAAAACCTTGGAAGCAAAT+TGG - chr1.2:84151204-84151223 None:intergenic 35.0%
GAAAACCTTGGAAGCAAATT+GGG - chr1.2:84151203-84151222 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG + chr1.2:84151964-84151983 MS.gene23913:intron 35.0%
GAAGCAGAATTAAGGAGTAA+TGG - chr1.2:84151348-84151367 None:intergenic 35.0%
TCATAATCAGCATCATCAGT+AGG - chr1.2:84151819-84151838 None:intergenic 35.0%
TGGAAATAGGCAAGAAGATT+TGG + chr1.2:84152037-84152056 MS.gene23913:CDS 35.0%
TGGAAATTCGGAATCTGAAT+CGG - chr1.2:84151304-84151323 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG + chr1.2:84151414-84151433 MS.gene23913:CDS 35.0%
! ATGATGCTGATTATGAGAAC+CGG + chr1.2:84151823-84151842 MS.gene23913:intron 35.0%
! GAGATATTCTGAAAGTTCTG+TGG - chr1.2:84151962-84151981 None:intergenic 35.0%
AAATTCGGAATCTGAATCGG+AGG - chr1.2:84151301-84151320 None:intergenic 40.0%
AAGTAATCGCCAAGGTTAGA+GGG - chr1.2:84151513-84151532 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG + chr1.2:84151478-84151497 MS.gene23913:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG + chr1.2:84151751-84151770 MS.gene23913:intron 40.0%
CACATTCTTCGAGAAAACCT+TGG - chr1.2:84151215-84151234 None:intergenic 40.0%
GAAAGGTTCAGAATCATCGT+CGG - chr1.2:84151178-84151197 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG - chr1.2:84151316-84151335 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG - chr1.2:84151448-84151467 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG + chr1.2:84151573-84151592 MS.gene23913:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG - chr1.2:84151771-84151790 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG - chr1.2:84151797-84151816 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG - chr1.2:84151254-84151273 None:intergenic 40.0%
GTGAAAGGGGATTTGGAAAT+AGG + chr1.2:84152024-84152043 MS.gene23913:CDS 40.0%
GTTCAACAACGCATCATCAA+CGG - chr1.2:84151646-84151665 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG - chr1.2:84151260-84151279 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG - chr1.2:84151356-84151375 None:intergenic 40.0%
TGTCAGGATGAGTTTGAGAA+AGG + chr1.2:84151690-84151709 MS.gene23913:CDS 40.0%
TTAATTCTGCTTCCGTTTCC+AGG + chr1.2:84151355-84151374 MS.gene23913:CDS 40.0%
TTGAAGCGGAAAATCACGTT+AGG - chr1.2:84151261-84151280 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG + chr1.2:84151975-84151994 MS.gene23913:intron 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG - chr1.2:84151409-84151428 None:intergenic 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG - chr1.2:84151957-84151976 None:intergenic 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG + chr1.2:84151698-84151717 MS.gene23913:CDS 40.0%
! TGATGATGCGTTGTTGAACT+CGG + chr1.2:84151647-84151666 MS.gene23913:CDS 40.0%
! TGATGCTGATTATGAGAACC+GGG + chr1.2:84151824-84151843 MS.gene23913:intron 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG - chr1.2:84151408-84151427 None:intergenic 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG + chr1.2:84151674-84151693 MS.gene23913:CDS 40.0%
AACCCTGGTTCAGATTCAGA+AGG - chr1.2:84151483-84151502 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG + chr1.2:84151516-84151535 MS.gene23913:CDS 45.0%
ATCACGTTAGGGTTAGGGTT+AGG - chr1.2:84151249-84151268 None:intergenic 45.0%
CATCCTTCTGAATCTGAACC+AGG + chr1.2:84151477-84151496 MS.gene23913:CDS 45.0%
CGGAAAATCACGTTAGGGTT+AGG - chr1.2:84151255-84151274 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG + chr1.2:84151484-84151503 MS.gene23913:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG - chr1.2:84151514-84151533 None:intergenic 45.0%
GCAGAGTCATCTGAACCAAA+AGG - chr1.2:84151993-84152012 None:intergenic 45.0%
GGCAATTCATGTCGACAAAC+AGG - chr1.2:84151798-84151817 None:intergenic 45.0%
GGCTGTTAAGAATCTTCCGA+CGG + chr1.2:84151617-84151636 MS.gene23913:CDS 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG - chr1.2:84151244-84151263 None:intergenic 45.0%
TGAATCTGAACCAGGGTTTC+GGG + chr1.2:84151485-84151504 MS.gene23913:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG + chr1.2:84151830-84151849 MS.gene23913:intron 45.0%
TGGAAGCAAATTGGGCAGAA+AGG - chr1.2:84151195-84151214 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG - chr1.2:84151243-84151262 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG - chr1.2:84151333-84151352 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG + chr1.2:84151825-84151844 MS.gene23913:intron 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG - chr1.2:84151407-84151426 None:intergenic 45.0%
! GCAATTGATTCAGCAGCTTG+CGG + chr1.2:84151551-84151570 MS.gene23913:CDS 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG + chr1.2:84151195-84151214 MS.gene23913:CDS 45.0%
!! GATCGTGATGATGGTTGAAG+CGG - chr1.2:84151275-84151294 None:intergenic 45.0%
AGAAGAGCGAAGGGATGGAA+TGG - chr1.2:84151324-84151343 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG - chr1.2:84151394-84151413 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG - chr1.2:84151383-84151402 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG - chr1.2:84151284-84151303 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG + chr1.2:84151829-84151848 MS.gene23913:intron 50.0%
GAAACTATCGGAATCGGGTC+GGG - chr1.2:84151382-84151401 None:intergenic 50.0%
GACTCTGGTGAAAGGGGATT+TGG + chr1.2:84152017-84152036 MS.gene23913:CDS 50.0%
GGCCGTTGAGATGATTCTGA+AGG - chr1.2:84151419-84151438 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG - chr1.2:84151388-84151407 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG - chr1.2:84151387-84151406 None:intergenic 50.0%
TGCTCAGGACTCTGGTGAAA+GGG + chr1.2:84152010-84152029 MS.gene23913:CDS 50.0%
TGGTTCAGATGACTCTGCTC+AGG + chr1.2:84151995-84152014 MS.gene23913:intron 50.0%
TTAACAGCCTCTTTCGACGC+CGG - chr1.2:84151606-84151625 None:intergenic 50.0%
TTCAGAATCATCGTCGGTGC+AGG - chr1.2:84151172-84151191 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG - chr1.2:84151334-84151353 None:intergenic 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG + chr1.2:84151867-84151886 MS.gene23913:intron 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG + chr1.2:84151885-84151904 MS.gene23913:intron 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG + chr1.2:84151501-84151520 MS.gene23913:CDS 50.0%
AACCGGGGTAGGGATGGTAA+CGG + chr1.2:84151840-84151859 MS.gene23913:intron 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG - chr1.2:84151329-84151348 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG - chr1.2:84151521-84151540 None:intergenic 55.0%
CTGCTCAGGACTCTGGTGAA+AGG + chr1.2:84152009-84152028 MS.gene23913:CDS 55.0%
GATGACTCTGCTCAGGACTC+TGG + chr1.2:84152002-84152021 MS.gene23913:intron 55.0%
GCATCATCAACGGTCACCGT+CGG - chr1.2:84151636-84151655 None:intergenic 55.0%
GCTCAGGACTCTGGTGAAAG+GGG + chr1.2:84152011-84152030 MS.gene23913:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG + chr1.2:84151870-84151889 MS.gene23913:intron 55.0%
GGTGGTAACAGTACCGTTGG+TGG + chr1.2:84151888-84151907 MS.gene23913:intron 55.0%
TAACTCTCCGACTGCACACG+TGG - chr1.2:84151149-84151168 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG + chr1.2:84151834-84151853 MS.gene23913:intron 55.0%
TCTTCTGCCACGTGTGCAGT+CGG + chr1.2:84151139-84151158 MS.gene23913:CDS 55.0%
TTAGAGGGAACCCGAAACCC+TGG - chr1.2:84151498-84151517 None:intergenic 55.0%
! GGTAACAGTACCGTTGGTGG+TGG + chr1.2:84151891-84151910 MS.gene23913:intron 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG + chr1.2:84151894-84151913 MS.gene23913:intron 55.0%
ACCACCACCACCACCACCAA+CGG - chr1.2:84151904-84151923 None:intergenic 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG - chr1.2:84151370-84151389 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG + chr1.2:84151093-84151112 MS.gene23913:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG - chr1.2:84151536-84151555 None:intergenic 60.0%
CACCGTTACCATCCCTACCC+CGG - chr1.2:84151845-84151864 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG + chr1.2:84151584-84151603 MS.gene23913:CDS 60.0%
GGCGGTGTGCCGTAACGATT+CGG - chr1.2:84151585-84151604 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG - chr1.2:84151440-84151459 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG + chr1.2:84151522-84151541 MS.gene23913:CDS 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG + chr1.2:84151849-84151868 MS.gene23913:intron 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG + chr1.2:84151897-84151916 MS.gene23913:intron 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG + chr1.2:84151850-84151869 MS.gene23913:intron 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG + chr1.2:84151856-84151875 MS.gene23913:intron 60.0%
ACAGCCTCTTTCGACGCCGG+CGG - chr1.2:84151603-84151622 None:intergenic 65.0%
ATCGGAATCGGGTCGGGTCC+TGG - chr1.2:84151376-84151395 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG + chr1.2:84151429-84151448 MS.gene23913:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG + chr1.2:84151918-84151937 MS.gene23913:intron 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG + chr1.2:84151900-84151919 MS.gene23913:intron 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG + chr1.2:84151843-84151862 MS.gene23913:intron 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG + chr1.2:84151924-84151943 MS.gene23913:intron 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG + chr1.2:84151921-84151940 MS.gene23913:intron 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG + chr1.2:84151915-84151934 MS.gene23913:intron 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG + chr1.2:84151912-84151931 MS.gene23913:intron 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG + chr1.2:84151903-84151922 MS.gene23913:intron 65.0%
! CACACCGCCGGCGTCGAAAG+AGG + chr1.2:84151596-84151615 MS.gene23913:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG + chr1.2:84151096-84151115 MS.gene23913:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG + chr1.2:84151099-84151118 MS.gene23913:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG + chr1.2:84151108-84151127 MS.gene23913:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG + chr1.2:84151102-84151121 MS.gene23913:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG + chr1.2:84151105-84151124 MS.gene23913:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 84151093 84152069 84151093 ID=MS.gene23913
chr1.2 mRNA 84151093 84152069 84151093 ID=MS.gene23913.t1;Parent=MS.gene23913
chr1.2 exon 84151093 84151719 84151093 ID=MS.gene23913.t1.exon1;Parent=MS.gene23913.t1
chr1.2 CDS 84151093 84151719 84151093 ID=cds.MS.gene23913.t1;Parent=MS.gene23913.t1
chr1.2 exon 84152003 84152069 84152003 ID=MS.gene23913.t1.exon2;Parent=MS.gene23913.t1
chr1.2 CDS 84152003 84152069 84152003 ID=cds.MS.gene23913.t1;Parent=MS.gene23913.t1
Gene Sequence

>MS.gene23913

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGAAAGTT
Protein sequence

>MS.gene23913.t1

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQMTLLRTLVKGDLEIGKKIWIES