AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037357

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037357.t1 MTR_1g114320 95.161 310 10 1 14 323 11 315 0.0 568
MS.gene037357.t1 MTR_6g079660 45.392 293 118 7 1 253 1 291 2.63e-65 210
MS.gene037357.t1 MTR_3g068005 37.255 255 116 9 16 244 7 243 4.07e-42 150
MS.gene037357.t1 MTR_3g083480 46.012 163 66 4 143 301 189 333 4.56e-40 144
MS.gene037357.t1 MTR_2g097620 32.143 280 160 10 16 281 14 277 6.89e-37 135
MS.gene037357.t1 MTR_4g064570 32.281 285 148 9 16 281 12 270 2.26e-36 134
MS.gene037357.t1 MTR_5g080350 28.621 290 151 7 17 272 5 272 3.96e-32 123
MS.gene037357.t1 MTR_3g072630 30.483 269 129 11 14 243 18 267 6.64e-32 121
MS.gene037357.t1 MTR_3g072630 30.483 269 129 11 14 243 18 267 1.29e-31 121
MS.gene037357.t1 MTR_1g114620 43.671 158 76 5 94 250 172 317 1.70e-31 120
MS.gene037357.t1 MTR_5g088720 49.505 101 48 2 142 242 148 245 2.78e-31 120
MS.gene037357.t1 MTR_5g088720 49.505 101 48 2 142 242 153 250 3.18e-31 120
MS.gene037357.t1 MTR_5g088720 49.505 101 48 2 142 242 194 291 4.02e-31 120
MS.gene037357.t1 MTR_7g074170 46.154 117 63 0 141 257 289 405 8.51e-31 122
MS.gene037357.t1 MTR_1g051105 43.165 139 70 3 142 280 107 236 2.07e-30 116
MS.gene037357.t1 MTR_4g110100 47.059 119 60 1 133 251 299 414 1.92e-28 114
MS.gene037357.t1 MTR_0067s0100 45.098 102 52 2 141 242 138 235 1.19e-26 106
MS.gene037357.t1 MTR_6g032960 39.370 127 69 2 143 267 186 306 2.51e-26 106
MS.gene037357.t1 MTR_6g016350 43.902 123 69 0 127 249 241 363 8.92e-24 100
MS.gene037357.t1 MTR_1g014710 39.623 106 62 1 147 250 181 286 4.10e-22 95.1
MS.gene037357.t1 MTR_3g088080 46.575 73 36 1 171 243 15 84 4.03e-21 86.3
MS.gene037357.t1 MTR_2g007340 56.923 65 27 1 177 241 182 245 5.85e-21 91.7
MS.gene037357.t1 MTR_5g041330 37.374 99 56 2 149 247 63 155 1.81e-19 85.9
MS.gene037357.t1 MTR_5g041310 38.384 99 55 2 149 247 73 165 2.34e-19 85.5
MS.gene037357.t1 MTR_3g025510 28.571 119 75 3 129 241 35 149 8.33e-14 68.6
MS.gene037357.t1 MTR_2g061790 43.478 69 39 0 197 265 109 177 8.79e-13 67.4
MS.gene037357.t1 MTR_6g087150 33.708 89 58 1 158 245 80 168 5.07e-11 63.5
MS.gene037357.t1 MTR_3g031000 38.356 73 36 2 171 243 279 342 6.07e-11 63.2
MS.gene037357.t1 MTR_7g073200 32.110 109 68 2 154 261 64 167 6.34e-11 60.8
MS.gene037357.t1 MTR_1g103050 31.776 107 58 3 138 238 59 156 7.66e-11 60.1
MS.gene037357.t1 MTR_2g078440 42.308 52 30 0 193 244 249 300 9.54e-11 62.4
MS.gene037357.t1 MTR_3g025550 41.176 51 30 0 192 242 12 62 9.78e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037357.t1 AT3G19950 53.333 300 99 9 1 270 1 289 7.04e-95 285
MS.gene037357.t1 AT3G19950 53.333 300 99 9 1 270 59 347 1.42e-94 286
MS.gene037357.t1 AT3G19950 53.333 300 99 9 1 270 59 347 1.42e-94 286
MS.gene037357.t1 AT3G13430 37.370 289 131 10 16 259 9 292 8.07e-45 155
MS.gene037357.t1 AT3G13430 37.370 289 131 10 16 259 9 292 8.07e-45 155
MS.gene037357.t1 AT3G13430 37.370 289 131 10 16 259 9 292 8.07e-45 155
MS.gene037357.t1 AT3G13430 37.370 289 131 10 16 259 9 292 8.07e-45 155
MS.gene037357.t1 AT1G55530 60.656 122 39 3 139 257 170 285 1.80e-44 155
MS.gene037357.t1 AT1G55530 60.656 122 39 3 139 257 170 285 1.80e-44 155
MS.gene037357.t1 AT1G55530 61.017 118 38 2 142 257 141 252 7.08e-44 153
MS.gene037357.t1 AT5G56340 45.810 179 73 5 128 301 204 363 2.01e-40 146
MS.gene037357.t1 AT3G46620 30.662 287 159 8 16 281 31 298 4.25e-36 134
MS.gene037357.t1 AT4G26400 51.327 113 49 1 141 253 191 297 4.31e-36 133
MS.gene037357.t1 AT4G26400 51.327 113 49 1 141 253 191 297 4.31e-36 133
MS.gene037357.t1 AT2G40830 34.167 240 133 7 17 243 9 236 7.87e-36 132
MS.gene037357.t1 AT2G40830 34.167 240 133 7 17 243 9 236 7.87e-36 132
MS.gene037357.t1 AT2G40830 34.167 240 133 7 17 243 9 236 7.87e-36 132
MS.gene037357.t1 AT2G40830 34.167 240 133 7 17 243 9 236 7.87e-36 132
MS.gene037357.t1 AT3G56580 35.565 239 125 8 17 242 9 231 4.13e-34 127
MS.gene037357.t1 AT3G56580 35.565 239 125 8 17 242 9 231 4.13e-34 127
MS.gene037357.t1 AT3G56580 35.565 239 125 8 17 242 9 231 4.13e-34 127
MS.gene037357.t1 AT5G59550 41.290 155 83 4 125 272 122 275 3.40e-33 127
MS.gene037357.t1 AT5G59550 41.290 155 83 4 125 272 227 380 1.15e-32 127
MS.gene037357.t1 AT2G39720 31.727 249 146 8 16 245 6 249 7.96e-32 123
MS.gene037357.t1 AT2G39720 31.727 249 146 8 16 245 6 249 7.96e-32 123
MS.gene037357.t1 AT1G60360 30.903 288 147 12 3 253 8 280 2.41e-31 120
MS.gene037357.t1 AT5G01980 47.368 114 59 1 141 254 295 407 2.83e-31 122
MS.gene037357.t1 AT5G15820 48.039 102 53 0 152 253 246 347 1.91e-28 112
MS.gene037357.t1 AT5G08139 45.714 105 47 2 152 251 264 363 1.35e-25 105
MS.gene037357.t1 AT3G02340 40.517 116 68 1 153 267 291 406 3.66e-25 104
MS.gene037357.t1 AT3G02340 40.517 116 68 1 153 267 291 406 3.66e-25 104
MS.gene037357.t1 AT5G20910 48.810 84 41 1 169 250 200 283 1.70e-23 98.6
MS.gene037357.t1 AT3G10815 45.745 94 49 2 151 244 77 168 6.49e-22 92.0
MS.gene037357.t1 AT5G64920 43.802 121 62 3 138 253 194 313 8.06e-21 91.7
MS.gene037357.t1 AT1G26800 37.383 107 60 2 150 256 73 172 8.91e-20 86.3
MS.gene037357.t1 AT5G60820 39.806 103 56 3 145 244 320 419 4.93e-18 84.7
MS.gene037357.t1 AT1G68180 44.595 74 40 1 168 241 110 182 1.06e-17 81.3
MS.gene037357.t1 AT3G60080 43.243 74 35 1 177 243 142 215 1.60e-16 79.3
MS.gene037357.t1 AT1G14200 39.506 81 48 1 162 242 75 154 4.71e-16 75.5
MS.gene037357.t1 AT2G44330 30.233 129 78 3 121 243 20 142 6.90e-15 72.0
MS.gene037357.t1 AT1G18770 39.474 76 45 1 167 242 30 104 6.90e-14 67.4
MS.gene037357.t1 AT5G02750 49.020 51 26 0 196 246 213 263 1.30e-13 70.5
MS.gene037357.t1 AT2G29840 37.895 95 57 2 152 245 199 292 1.51e-13 70.5
MS.gene037357.t1 AT2G03000 40.845 71 36 2 171 241 461 525 1.65e-12 68.6
MS.gene037357.t1 AT1G18760 34.940 83 52 1 163 245 143 223 2.31e-12 65.9
MS.gene037357.t1 AT5G52140 30.097 103 61 3 141 241 185 278 2.85e-11 63.5
MS.gene037357.t1 AT5G06490 32.432 74 42 2 173 238 98 171 8.82e-11 60.8
MS.gene037357.t1 AT3G30460 36.765 68 40 2 178 242 77 144 9.19e-11 59.7

Find 121 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 1.3:+77547503 MS.gene037357:CDS
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 1.3:-77547220 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 1.3:-77547271 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 1.3:+77547504 MS.gene037357:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 1.3:+77547374 MS.gene037357:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 1.3:+77548056 MS.gene037357:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 1.3:+77548036 MS.gene037357:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 1.3:+77547100 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 1.3:+77548043 MS.gene037357:CDS
ATATCTCTGCGGTATCCTTT+TGG 0.328546 1.3:+77547994 MS.gene037357:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 1.3:-77547372 None:intergenic
GGCAATTCATGTCGACAAAC+AGG 0.344933 1.3:-77547814 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 1.3:-77547392 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 1.3:+77547541 MS.gene037357:CDS
GGTGGTGGTAGCAGTGGTGG+TGG 0.356931 1.3:+77547937 MS.gene037357:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 1.3:+77547520 MS.gene037357:CDS
GGTGGTAGCAGTGGTGGTGG+AGG 0.383648 1.3:+77547940 MS.gene037357:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 1.3:+77547124 MS.gene037357:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 1.3:+77547214 MS.gene037357:CDS
GTTAGGGTTAGGGTTAGATT+CGG 0.397799 1.3:-77547260 None:intergenic
TGCTCAGGACTCTGGTGAAA+GGG 0.401420 1.3:+77548029 MS.gene037357:CDS
ATGATGATTGCTTGCTTCCA+TGG 0.401701 1.3:+77547770 MS.gene037357:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 1.3:-77547219 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 1.3:-77547270 None:intergenic
GGTGGTGGTGGTAGCAGTGG+TGG 0.420491 1.3:+77547934 MS.gene037357:CDS
AGGGATGGTAACGGTGGCGA+TGG 0.423838 1.3:+77547868 MS.gene037357:CDS
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 1.3:+77547127 MS.gene037357:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 1.3:-77547601 None:intergenic
TGGTTCAGATGACTCTGCTC+AGG 0.429490 1.3:+77548014 MS.gene037357:CDS
GGTAGCAGTGGTGGTGGAGG+AGG 0.436996 1.3:+77547943 MS.gene037357:CDS
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 1.3:+77547118 MS.gene037357:CDS
GAAGGGATGGAATGGAAATT+CGG 0.445340 1.3:-77547332 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 1.3:+77547496 MS.gene037357:CDS
AACAGTACCGTTGGTGGTGG+TGG 0.448041 1.3:+77547913 MS.gene037357:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 1.3:+77547121 MS.gene037357:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 1.3:+77547535 MS.gene037357:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 1.3:-77547530 None:intergenic
ATGATGCTGATTATGAGAAC+CGG 0.453554 1.3:+77547842 MS.gene037357:CDS
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 1.3:-77547363 None:intergenic
GTAACGGTGGCGATGGGTTG+AGG 0.457788 1.3:+77547875 MS.gene037357:CDS
GAATCAATGTGCTGTTTGTC+AGG 0.459494 1.3:+77547693 MS.gene037357:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 1.3:-77547386 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 1.3:-77547277 None:intergenic
GGGGTCGAAACTATCGGAAT+CGG 0.469880 1.3:-77547404 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 1.3:+77547709 MS.gene037357:CDS
GATGGGTTGAGGTCTGTTGT+TGG 0.484013 1.3:+77547886 MS.gene037357:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 1.3:-77547320 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 1.3:+77547592 MS.gene037357:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 1.3:-77547350 None:intergenic
GATGACTCTGCTCAGGACTC+TGG 0.494585 1.3:+77548021 MS.gene037357:CDS
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 1.3:+77547109 None:intergenic
TTCAGAATCATCGTCGGTGC+AGG 0.495095 1.3:-77547188 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 1.3:-77547211 None:intergenic
CTGCTCAGGACTCTGGTGAA+AGG 0.499574 1.3:+77548028 MS.gene037357:CDS
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 1.3:-77547364 None:intergenic
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 1.3:-77547345 None:intergenic
TTAGGGTTAGGGTTAGATTC+GGG 0.503970 1.3:-77547259 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 1.3:+77547115 MS.gene037357:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 1.3:+77547615 MS.gene037357:CDS
GAAACTATCGGAATCGGGTC+GGG 0.511848 1.3:-77547398 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 1.3:-77547349 None:intergenic
TCATGATAAACATGCTTACA+AGG 0.513615 1.3:-77547751 None:intergenic
GCAGAGTCATCTGAACCAAA+AGG 0.515275 1.3:-77548009 None:intergenic
CACATTCTTCGAGAAAACCT+TGG 0.516574 1.3:-77547231 None:intergenic
AGTACCGTTGGTGGTGGTGG+TGG 0.516728 1.3:+77547916 MS.gene037357:CDS
TGATGATGCGTTGTTGAACT+CGG 0.517659 1.3:+77547666 MS.gene037357:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 1.3:-77547464 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 1.3:-77547410 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 1.3:+77547158 MS.gene037357:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 1.3:-77547456 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 1.3:-77547340 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 1.3:-77547300 None:intergenic
GGGATGGTAACGGTGGCGAT+GGG 0.544115 1.3:+77547869 MS.gene037357:CDS
GGGTCGAAACTATCGGAATC+GGG 0.544986 1.3:-77547403 None:intergenic
ATTCTGAAAGTTCTGTGGAC+AGG 0.545677 1.3:-77547973 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 1.3:+77547112 MS.gene037357:CDS
CTGATTATGAGAACCGGGGT+AGG 0.547933 1.3:+77547848 MS.gene037357:CDS
TATGAGAACCGGGGTAGGGA+TGG 0.558385 1.3:+77547853 MS.gene037357:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 1.3:-77547399 None:intergenic
GGTAACAGTACCGTTGGTGG+TGG 0.569307 1.3:+77547910 MS.gene037357:CDS
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 1.3:-77547619 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 1.3:-77547424 None:intergenic
GAATCGTTACGGCACACCGC+CGG 0.579890 1.3:+77547603 MS.gene037357:CDS
GAGTTATGCAATTCAAGCCA+TGG 0.582250 1.3:-77547787 None:intergenic
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 1.3:-77547529 None:intergenic
GCTCAGGACTCTGGTGAAAG+GGG 0.588802 1.3:+77548030 MS.gene037357:CDS
GCAATTGATTCAGCAGCTTG+CGG 0.589049 1.3:+77547570 MS.gene037357:CDS
GTTCAACAACGCATCATCAA+CGG 0.590877 1.3:-77547662 None:intergenic
TGATTATGAGAACCGGGGTA+GGG 0.593107 1.3:+77547849 MS.gene037357:CDS
TTAACAGCCTCTTTCGACGC+CGG 0.593234 1.3:-77547622 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 1.3:-77547276 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 1.3:+77547433 MS.gene037357:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 1.3:+77547448 MS.gene037357:CDS
TCATAATCAGCATCATCAGT+AGG 0.603013 1.3:-77547835 None:intergenic
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 1.3:-77547425 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 1.3:+77547497 MS.gene037357:CDS
CACCGTTACCATCCCTACCC+CGG 0.609569 1.3:-77547861 None:intergenic
TGATGCTGATTATGAGAACC+GGG 0.618591 1.3:+77547843 MS.gene037357:CDS
GAGATATTCTGAAAGTTCTG+TGG 0.618924 1.3:-77547978 None:intergenic
GGCCGTTGAGATGATTCTGA+AGG 0.619045 1.3:-77547435 None:intergenic
GTTGGTGGTAACAGTACCGT+TGG 0.622508 1.3:+77547904 MS.gene037357:CDS
TTAGAGGGAACCCGAAACCC+TGG 0.623256 1.3:-77547514 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 1.3:-77547165 None:intergenic
GCAATTCATGTCGACAAACA+GGG 0.630959 1.3:-77547813 None:intergenic
GGGTTGAGGTCTGTTGTTGG+TGG 0.640822 1.3:+77547889 MS.gene037357:CDS
GGTGGTAACAGTACCGTTGG+TGG 0.642968 1.3:+77547907 MS.gene037357:CDS
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 1.3:+77547636 MS.gene037357:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 1.3:-77547537 None:intergenic
CGGGGTAGGGATGGTAACGG+TGG 0.648198 1.3:+77547862 MS.gene037357:CDS
AACCCTGGTTCAGATTCAGA+AGG 0.650452 1.3:-77547499 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 1.3:-77547317 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 1.3:+77547717 MS.gene037357:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 1.3:-77547291 None:intergenic
GCATCATCAACGGTCACCGT+CGG 0.671989 1.3:-77547652 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 1.3:-77547194 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 1.3:+77547103 None:intergenic
AACCGGGGTAGGGATGGTAA+CGG 0.688725 1.3:+77547859 MS.gene037357:CDS
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 1.3:-77547423 None:intergenic
GAACTTTCAGAATATCTCTG+CGG 0.750243 1.3:+77547983 MS.gene037357:CDS
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 1.3:-77547552 None:intergenic
GATGCTGATTATGAGAACCG+GGG 0.800968 1.3:+77547844 MS.gene037357:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGCAGAATTAAGGAGTAAT+GGG - chr1.3:77547366-77547385 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG - chr1.3:77547754-77547773 None:intergenic 30.0%
AGAAAACCTTGGAAGCAAAT+TGG - chr1.3:77547223-77547242 None:intergenic 35.0%
GAAAACCTTGGAAGCAAATT+GGG - chr1.3:77547222-77547241 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG + chr1.3:77547983-77548002 MS.gene037357:CDS 35.0%
GAAGCAGAATTAAGGAGTAA+TGG - chr1.3:77547367-77547386 None:intergenic 35.0%
TCATAATCAGCATCATCAGT+AGG - chr1.3:77547838-77547857 None:intergenic 35.0%
TGGAAATAGGCAAGAAGATT+TGG + chr1.3:77548056-77548075 MS.gene037357:CDS 35.0%
TGGAAATTCGGAATCTGAAT+CGG - chr1.3:77547323-77547342 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG + chr1.3:77547433-77547452 MS.gene037357:CDS 35.0%
! ATGATGCTGATTATGAGAAC+CGG + chr1.3:77547842-77547861 MS.gene037357:CDS 35.0%
! GAGATATTCTGAAAGTTCTG+TGG - chr1.3:77547981-77548000 None:intergenic 35.0%
AAATTCGGAATCTGAATCGG+AGG - chr1.3:77547320-77547339 None:intergenic 40.0%
AAGTAATCGCCAAGGTTAGA+GGG - chr1.3:77547532-77547551 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG + chr1.3:77547497-77547516 MS.gene037357:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG + chr1.3:77547770-77547789 MS.gene037357:CDS 40.0%
CACATTCTTCGAGAAAACCT+TGG - chr1.3:77547234-77547253 None:intergenic 40.0%
GAAAGGTTCAGAATCATCGT+CGG - chr1.3:77547197-77547216 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG - chr1.3:77547335-77547354 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG - chr1.3:77547467-77547486 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG + chr1.3:77547592-77547611 MS.gene037357:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG - chr1.3:77547790-77547809 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG - chr1.3:77547816-77547835 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG - chr1.3:77547273-77547292 None:intergenic 40.0%
GTGAAAGGGGATTTGGAAAT+AGG + chr1.3:77548043-77548062 MS.gene037357:CDS 40.0%
GTTAGGGTTAGGGTTAGATT+CGG - chr1.3:77547263-77547282 None:intergenic 40.0%
GTTCAACAACGCATCATCAA+CGG - chr1.3:77547665-77547684 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG - chr1.3:77547279-77547298 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG - chr1.3:77547375-77547394 None:intergenic 40.0%
TGTCAGGATGAGTTTGAGAA+AGG + chr1.3:77547709-77547728 MS.gene037357:CDS 40.0%
TTAATTCTGCTTCCGTTTCC+AGG + chr1.3:77547374-77547393 MS.gene037357:CDS 40.0%
TTAGGGTTAGGGTTAGATTC+GGG - chr1.3:77547262-77547281 None:intergenic 40.0%
TTGAAGCGGAAAATCACGTT+AGG - chr1.3:77547280-77547299 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG + chr1.3:77547994-77548013 MS.gene037357:CDS 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG - chr1.3:77547428-77547447 None:intergenic 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG - chr1.3:77547976-77547995 None:intergenic 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG + chr1.3:77547717-77547736 MS.gene037357:CDS 40.0%
! TGATGATGCGTTGTTGAACT+CGG + chr1.3:77547666-77547685 MS.gene037357:CDS 40.0%
! TGATGCTGATTATGAGAACC+GGG + chr1.3:77547843-77547862 MS.gene037357:CDS 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG - chr1.3:77547427-77547446 None:intergenic 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG + chr1.3:77547693-77547712 MS.gene037357:CDS 40.0%
AACCCTGGTTCAGATTCAGA+AGG - chr1.3:77547502-77547521 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG + chr1.3:77547535-77547554 MS.gene037357:CDS 45.0%
CATCCTTCTGAATCTGAACC+AGG + chr1.3:77547496-77547515 MS.gene037357:CDS 45.0%
CGGAAAATCACGTTAGGGTT+AGG - chr1.3:77547274-77547293 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG + chr1.3:77547503-77547522 MS.gene037357:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG - chr1.3:77547533-77547552 None:intergenic 45.0%
GCAGAGTCATCTGAACCAAA+AGG - chr1.3:77548012-77548031 None:intergenic 45.0%
GGCAATTCATGTCGACAAAC+AGG - chr1.3:77547817-77547836 None:intergenic 45.0%
GGCTGTTAAGAATCTTCCGA+CGG + chr1.3:77547636-77547655 MS.gene037357:CDS 45.0%
TGAATCTGAACCAGGGTTTC+GGG + chr1.3:77547504-77547523 MS.gene037357:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG + chr1.3:77547849-77547868 MS.gene037357:CDS 45.0%
TGGAAGCAAATTGGGCAGAA+AGG - chr1.3:77547214-77547233 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG - chr1.3:77547352-77547371 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG + chr1.3:77547844-77547863 MS.gene037357:CDS 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG - chr1.3:77547426-77547445 None:intergenic 45.0%
! GCAATTGATTCAGCAGCTTG+CGG + chr1.3:77547570-77547589 MS.gene037357:CDS 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG + chr1.3:77547214-77547233 MS.gene037357:CDS 45.0%
!! GATCGTGATGATGGTTGAAG+CGG - chr1.3:77547294-77547313 None:intergenic 45.0%
AGAAGAGCGAAGGGATGGAA+TGG - chr1.3:77547343-77547362 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG - chr1.3:77547413-77547432 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG - chr1.3:77547402-77547421 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG - chr1.3:77547303-77547322 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG + chr1.3:77547848-77547867 MS.gene037357:CDS 50.0%
GAAACTATCGGAATCGGGTC+GGG - chr1.3:77547401-77547420 None:intergenic 50.0%
GACTCTGGTGAAAGGGGATT+TGG + chr1.3:77548036-77548055 MS.gene037357:CDS 50.0%
GGCCGTTGAGATGATTCTGA+AGG - chr1.3:77547438-77547457 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG - chr1.3:77547407-77547426 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG - chr1.3:77547406-77547425 None:intergenic 50.0%
TGCTCAGGACTCTGGTGAAA+GGG + chr1.3:77548029-77548048 MS.gene037357:CDS 50.0%
TGGTTCAGATGACTCTGCTC+AGG + chr1.3:77548014-77548033 MS.gene037357:CDS 50.0%
TTAACAGCCTCTTTCGACGC+CGG - chr1.3:77547625-77547644 None:intergenic 50.0%
TTCAGAATCATCGTCGGTGC+AGG - chr1.3:77547191-77547210 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG - chr1.3:77547353-77547372 None:intergenic 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG + chr1.3:77547886-77547905 MS.gene037357:CDS 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG + chr1.3:77547904-77547923 MS.gene037357:CDS 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG + chr1.3:77547520-77547539 MS.gene037357:CDS 50.0%
AACCGGGGTAGGGATGGTAA+CGG + chr1.3:77547859-77547878 MS.gene037357:CDS 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG - chr1.3:77547348-77547367 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG - chr1.3:77547540-77547559 None:intergenic 55.0%
CTGCTCAGGACTCTGGTGAA+AGG + chr1.3:77548028-77548047 MS.gene037357:CDS 55.0%
GATGACTCTGCTCAGGACTC+TGG + chr1.3:77548021-77548040 MS.gene037357:CDS 55.0%
GCATCATCAACGGTCACCGT+CGG - chr1.3:77547655-77547674 None:intergenic 55.0%
GCTCAGGACTCTGGTGAAAG+GGG + chr1.3:77548030-77548049 MS.gene037357:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG + chr1.3:77547889-77547908 MS.gene037357:CDS 55.0%
GGTGGTAACAGTACCGTTGG+TGG + chr1.3:77547907-77547926 MS.gene037357:CDS 55.0%
TAACTCTCCGACTGCACACG+TGG - chr1.3:77547168-77547187 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG + chr1.3:77547853-77547872 MS.gene037357:CDS 55.0%
TCTTCTGCCACGTGTGCAGT+CGG + chr1.3:77547158-77547177 MS.gene037357:CDS 55.0%
TTAGAGGGAACCCGAAACCC+TGG - chr1.3:77547517-77547536 None:intergenic 55.0%
! GGTAACAGTACCGTTGGTGG+TGG + chr1.3:77547910-77547929 MS.gene037357:CDS 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG + chr1.3:77547913-77547932 MS.gene037357:CDS 55.0%
ACCACCACCACCACCACCAA+CGG - chr1.3:77547923-77547942 None:intergenic 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG - chr1.3:77547389-77547408 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG + chr1.3:77547112-77547131 MS.gene037357:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG - chr1.3:77547555-77547574 None:intergenic 60.0%
CACCGTTACCATCCCTACCC+CGG - chr1.3:77547864-77547883 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG + chr1.3:77547603-77547622 MS.gene037357:CDS 60.0%
GGCGGTGTGCCGTAACGATT+CGG - chr1.3:77547604-77547623 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG - chr1.3:77547459-77547478 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG + chr1.3:77547541-77547560 MS.gene037357:CDS 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG + chr1.3:77547868-77547887 MS.gene037357:CDS 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG + chr1.3:77547916-77547935 MS.gene037357:CDS 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG + chr1.3:77547869-77547888 MS.gene037357:CDS 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG + chr1.3:77547875-77547894 MS.gene037357:CDS 60.0%
ACAGCCTCTTTCGACGCCGG+CGG - chr1.3:77547622-77547641 None:intergenic 65.0%
ATCGGAATCGGGTCGGGTCC+TGG - chr1.3:77547395-77547414 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG + chr1.3:77547448-77547467 MS.gene037357:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG + chr1.3:77547937-77547956 MS.gene037357:CDS 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG + chr1.3:77547919-77547938 MS.gene037357:CDS 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG + chr1.3:77547862-77547881 MS.gene037357:CDS 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG + chr1.3:77547943-77547962 MS.gene037357:CDS 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG + chr1.3:77547940-77547959 MS.gene037357:CDS 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG + chr1.3:77547934-77547953 MS.gene037357:CDS 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG + chr1.3:77547931-77547950 MS.gene037357:CDS 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG + chr1.3:77547922-77547941 MS.gene037357:CDS 65.0%
! CACACCGCCGGCGTCGAAAG+AGG + chr1.3:77547615-77547634 MS.gene037357:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG + chr1.3:77547115-77547134 MS.gene037357:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG + chr1.3:77547118-77547137 MS.gene037357:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG + chr1.3:77547127-77547146 MS.gene037357:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG + chr1.3:77547121-77547140 MS.gene037357:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG + chr1.3:77547124-77547143 MS.gene037357:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 77547112 77548083 77547112 ID=MS.gene037357
chr1.3 mRNA 77547112 77548083 77547112 ID=MS.gene037357.t1;Parent=MS.gene037357
chr1.3 exon 77547112 77548083 77547112 ID=MS.gene037357.t1.exon1;Parent=MS.gene037357.t1
chr1.3 CDS 77547112 77548083 77547112 ID=cds.MS.gene037357.t1;Parent=MS.gene037357.t1
Gene Sequence

>MS.gene037357

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAATCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA
Protein sequence

>MS.gene037357.t1

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPESNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDDCLLPWLELHNSCPVCRHELPTDDADYENRGRDGNGGDGLRSVVGGNSTVGGGGGGGSSGGGGGNRPVHRTFRISLRYPFGSDDSAQDSGERGFGNRQEDLD