AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23916

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23916.t1 MTR_1g114320 94.366 213 9 1 1 213 1 210 3.97e-145 407
MS.gene23916.t1 MTR_6g079660 40.086 232 104 5 14 210 20 251 2.12e-32 121
MS.gene23916.t1 MTR_3g083480 58.209 67 22 1 143 209 189 249 9.71e-19 84.0
MS.gene23916.t1 MTR_3g068005 30.137 219 109 9 16 208 7 207 3.09e-16 77.0
MS.gene23916.t1 MTR_4g064570 28.922 204 105 8 16 205 12 189 1.99e-14 71.6
MS.gene23916.t1 MTR_2g097620 26.471 204 124 8 16 209 14 201 1.39e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23916.t1 AT3G19950 48.560 243 84 9 1 213 1 232 1.58e-61 196
MS.gene23916.t1 AT3G19950 48.560 243 84 9 1 213 59 290 2.44e-61 197
MS.gene23916.t1 AT3G19950 48.560 243 84 9 1 213 59 290 2.44e-61 197
MS.gene23916.t1 AT1G55530 59.211 76 24 2 139 213 170 239 1.16e-21 92.0
MS.gene23916.t1 AT1G55530 59.211 76 24 2 139 213 170 239 1.16e-21 92.0
MS.gene23916.t1 AT1G55530 59.722 72 23 1 142 213 141 206 2.75e-21 90.5
MS.gene23916.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23916.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23916.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23916.t1 AT3G13430 32.917 240 104 11 16 209 9 237 1.84e-20 88.2
MS.gene23916.t1 AT5G56340 54.878 82 23 2 128 209 204 271 2.93e-19 85.9
MS.gene23916.t1 AT4G26400 44.928 69 32 1 141 209 191 253 3.71e-14 70.9
MS.gene23916.t1 AT4G26400 44.928 69 32 1 141 209 191 253 3.71e-14 70.9
MS.gene23916.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23916.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23916.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23916.t1 AT2G40830 27.619 210 127 7 17 213 9 206 5.13e-14 70.5
MS.gene23916.t1 AT3G56580 29.703 202 113 7 17 205 9 194 8.36e-13 67.0
MS.gene23916.t1 AT3G56580 29.703 202 113 7 17 205 9 194 8.36e-13 67.0
MS.gene23916.t1 AT3G56580 29.703 202 113 7 17 205 9 194 8.36e-13 67.0
MS.gene23916.t1 AT1G60360 26.609 233 122 9 15 213 23 240 6.39e-11 61.6

Find 88 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATCTGAACCAGGGTTT+CGG 0.222566 1.2:+84164343 MS.gene23916:CDS
AGAAAACCTTGGAAGCAAAT+TGG 0.253434 1.2:-84164060 None:intergenic
CGGAAAATCACGTTAGGGTT+AGG 0.253624 1.2:-84164111 None:intergenic
TGAATCTGAACCAGGGTTTC+GGG 0.260029 1.2:+84164344 MS.gene23916:CDS
TTAATTCTGCTTCCGTTTCC+AGG 0.291944 1.2:+84164214 MS.gene23916:CDS
TGGAAATAGGCAAGAAGATT+TGG 0.294855 1.2:+84164896 MS.gene23916:CDS
GACTCTGGTGAAAGGGGATT+TGG 0.316145 1.2:+84164876 MS.gene23916:CDS
GAGTTACGAGTCATGTCTTC+TGG 0.323312 1.2:+84163940 None:intergenic
GTGAAAGGGGATTTGGAAAT+AGG 0.323534 1.2:+84164883 MS.gene23916:CDS
TGGAAACGGAAGCAGAATTA+AGG 0.337608 1.2:-84164212 None:intergenic
ATCGGAATCGGGTCGGGTCC+TGG 0.349609 1.2:-84164232 None:intergenic
GGCGATTACTTCCTCGGTGC+TGG 0.350083 1.2:+84164381 MS.gene23916:CDS
TTTCGGGTTCCCTCTAACCT+TGG 0.381086 1.2:+84164360 MS.gene23916:CDS
GGCGATGGCGGTGGTGGCGG+TGG 0.385441 1.2:+84163964 MS.gene23916:CDS
TTCTGCCCAATTTGCTTCCA+AGG 0.391229 1.2:+84164054 MS.gene23916:CDS
TGCTCAGGACTCTGGTGAAA+GGG 0.401420 1.2:+84164869 MS.gene23916:CDS
GAAAACCTTGGAAGCAAATT+GGG 0.402814 1.2:-84164059 None:intergenic
GGAAAATCACGTTAGGGTTA+GGG 0.416687 1.2:-84164110 None:intergenic
GATGGCGGTGGTGGCGGTGG+AGG 0.427865 1.2:+84163967 MS.gene23916:CDS
GGCGGTGTGCCGTAACGATT+CGG 0.428230 1.2:-84164441 None:intergenic
TGGTTCAGATGACTCTGCTC+AGG 0.429490 1.2:+84164854 MS.gene23916:intron
GTTAGGGTTAGGGTTAGGTT+CGG 0.433893 1.2:-84164100 None:intergenic
TCTGGCGGCGATGGCGGTGG+TGG 0.437691 1.2:+84163958 MS.gene23916:CDS
TTAGGGTTAGGGTTAGGTTC+GGG 0.443732 1.2:-84164099 None:intergenic
GAAGGGATGGAATGGAAATT+CGG 0.445340 1.2:-84164172 None:intergenic
CATCCTTCTGAATCTGAACC+AGG 0.445750 1.2:+84164336 MS.gene23916:CDS
GGCGGCGATGGCGGTGGTGG+CGG 0.448894 1.2:+84163961 MS.gene23916:CDS
AACCTTGGCGATTACTTCCT+CGG 0.449887 1.2:+84164375 MS.gene23916:CDS
GAAGTAATCGCCAAGGTTAG+AGG 0.450993 1.2:-84164370 None:intergenic
AAGCAGAATTAAGGAGTAAT+GGG 0.453884 1.2:-84164203 None:intergenic
GAATCAATGTGCTGTTTGTC+AGG 0.459494 1.2:+84164533 MS.gene23916:CDS
ATCGGGTCGGGTCCTGGAAA+CGG 0.461334 1.2:-84164226 None:intergenic
ATCACGTTAGGGTTAGGGTT+AGG 0.462218 1.2:-84164105 None:intergenic
TTGAAGCGGAAAATCACGTT+AGG 0.465974 1.2:-84164117 None:intergenic
GGGGTCGAAACTATCGGAAT+CGG 0.469880 1.2:-84164244 None:intergenic
TGTCAGGATGAGTTTGAGAA+AGG 0.474239 1.2:+84164549 MS.gene23916:CDS
TGGAAATTCGGAATCTGAAT+CGG 0.491233 1.2:-84164160 None:intergenic
GAGAATGATCCGAATCGTTA+CGG 0.491542 1.2:+84164432 MS.gene23916:CDS
GAGTAATGGGAGAAGAGCGA+AGG 0.493838 1.2:-84164190 None:intergenic
GATGACTCTGCTCAGGACTC+TGG 0.494585 1.2:+84164861 MS.gene23916:intron
GTCATGTCTTCTGGCGGCGA+TGG 0.494693 1.2:+84163949 None:intergenic
TTCAGAATCATCGTCGGTGC+AGG 0.495095 1.2:-84164028 None:intergenic
TGGAAGCAAATTGGGCAGAA+AGG 0.499109 1.2:-84164051 None:intergenic
CTGCTCAGGACTCTGGTGAA+AGG 0.499574 1.2:+84164868 MS.gene23916:CDS
GAAGCAGAATTAAGGAGTAA+TGG 0.500388 1.2:-84164204 None:intergenic
ATGGGAGAAGAGCGAAGGGA+TGG 0.502378 1.2:-84164185 None:intergenic
TCTTCTGGCGGCGATGGCGG+TGG 0.504625 1.2:+84163955 MS.gene23916:CDS
CACACCGCCGGCGTCGAAAG+AGG 0.509979 1.2:+84164455 MS.gene23916:CDS
GAAACTATCGGAATCGGGTC+GGG 0.511848 1.2:-84164238 None:intergenic
AGTAATGGGAGAAGAGCGAA+GGG 0.512255 1.2:-84164189 None:intergenic
CACATTCTTCGAGAAAACCT+TGG 0.516574 1.2:-84164071 None:intergenic
TGATGATGCGTTGTTGAACT+CGG 0.517659 1.2:+84164506 MS.gene23916:CDS
GAATTGAATGTTTGCACCGT+CGG 0.523561 1.2:-84164304 None:intergenic
AGCGAAGGGGTCGAAACTAT+CGG 0.525966 1.2:-84164250 None:intergenic
TCTTCTGCCACGTGTGCAGT+CGG 0.526650 1.2:+84163998 MS.gene23916:CDS
TGTTTGCACCGTCGGCGTGA+AGG 0.527557 1.2:-84164296 None:intergenic
AGAAGAGCGAAGGGATGGAA+TGG 0.530439 1.2:-84164180 None:intergenic
CGGAGGAATGATCGTGATGA+TGG 0.542624 1.2:-84164140 None:intergenic
GGGTCGAAACTATCGGAATC+GGG 0.544986 1.2:-84164243 None:intergenic
ATGTCTTCTGGCGGCGATGG+CGG 0.545998 1.2:+84163952 MS.gene23916:CDS
CGAAACTATCGGAATCGGGT+CGG 0.558631 1.2:-84164239 None:intergenic
ACAGCCTCTTTCGACGCCGG+CGG 0.572237 1.2:-84164459 None:intergenic
TGATTCTGAAGGAAAGCGAA+GGG 0.572754 1.2:-84164264 None:intergenic
GAATCGTTACGGCACACCGC+CGG 0.579890 1.2:+84164443 MS.gene23916:CDS
AAGTAATCGCCAAGGTTAGA+GGG 0.588263 1.2:-84164369 None:intergenic
GCTCAGGACTCTGGTGAAAG+GGG 0.588802 1.2:+84164870 MS.gene23916:CDS
GCAATTGATTCAGCAGCTTG+CGG 0.589049 1.2:+84164410 MS.gene23916:CDS
GTTCAACAACGCATCATCAA+CGG 0.590877 1.2:-84164502 None:intergenic
TTAACAGCCTCTTTCGACGC+CGG 0.593234 1.2:-84164462 None:intergenic
TGAAGCGGAAAATCACGTTA+GGG 0.593973 1.2:-84164116 None:intergenic
TTCCTTCAGAATCATCTCAA+CGG 0.596074 1.2:+84164273 MS.gene23916:CDS
CTCAACGGCCTTCACGCCGA+CGG 0.597725 1.2:+84164288 MS.gene23916:CDS
ATGATTCTGAAGGAAAGCGA+AGG 0.604871 1.2:-84164265 None:intergenic
ATCCTTCTGAATCTGAACCA+GGG 0.609564 1.2:+84164337 MS.gene23916:CDS
GGCCGTTGAGATGATTCTGA+AGG 0.619045 1.2:-84164275 None:intergenic
TTAGAGGGAACCCGAAACCC+TGG 0.623256 1.2:-84164354 None:intergenic
TAACTCTCCGACTGCACACG+TGG 0.624454 1.2:-84164005 None:intergenic
GGCTGTTAAGAATCTTCCGA+CGG 0.643871 1.2:+84164476 MS.gene23916:CDS
CACCGAGGAAGTAATCGCCA+AGG 0.647106 1.2:-84164377 None:intergenic
AACCCTGGTTCAGATTCAGA+AGG 0.650452 1.2:-84164339 None:intergenic
AAATTCGGAATCTGAATCGG+AGG 0.656689 1.2:-84164157 None:intergenic
TGAGTTTGAGAAAGGTACAC+AGG 0.657062 1.2:+84164557 MS.gene23916:CDS
GATCGTGATGATGGTTGAAG+CGG 0.660952 1.2:-84164131 None:intergenic
GCATCATCAACGGTCACCGT+CGG 0.671989 1.2:-84164492 None:intergenic
GAAAGGTTCAGAATCATCGT+CGG 0.672533 1.2:-84164034 None:intergenic
TTACGAGTCATGTCTTCTGG+CGG 0.684570 1.2:+84163943 None:intergenic
GATTCTGAAGGAAAGCGAAG+GGG 0.714986 1.2:-84164263 None:intergenic
ATTGCTCGAAGCCAGCACCG+AGG 0.759055 1.2:-84164392 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGCAGAATTAAGGAGTAAT+GGG - chr1.2:84164206-84164225 None:intergenic 30.0%
TCATGATAAACATGCTTACA+AGG - chr1.2:84164594-84164613 None:intergenic 30.0%
AGAAAACCTTGGAAGCAAAT+TGG - chr1.2:84164063-84164082 None:intergenic 35.0%
GAAAACCTTGGAAGCAAATT+GGG - chr1.2:84164062-84164081 None:intergenic 35.0%
GAACTTTCAGAATATCTCTG+CGG + chr1.2:84164823-84164842 MS.gene23916:intron 35.0%
GAAGCAGAATTAAGGAGTAA+TGG - chr1.2:84164207-84164226 None:intergenic 35.0%
TCATAATCAGCATCATCAGT+AGG - chr1.2:84164678-84164697 None:intergenic 35.0%
TGGAAATAGGCAAGAAGATT+TGG + chr1.2:84164896-84164915 MS.gene23916:CDS 35.0%
TGGAAATTCGGAATCTGAAT+CGG - chr1.2:84164163-84164182 None:intergenic 35.0%
TTCCTTCAGAATCATCTCAA+CGG + chr1.2:84164273-84164292 MS.gene23916:CDS 35.0%
! ATGATGCTGATTATGAGAAC+CGG + chr1.2:84164682-84164701 MS.gene23916:intron 35.0%
! GAGATATTCTGAAAGTTCTG+TGG - chr1.2:84164821-84164840 None:intergenic 35.0%
AAATTCGGAATCTGAATCGG+AGG - chr1.2:84164160-84164179 None:intergenic 40.0%
AAGTAATCGCCAAGGTTAGA+GGG - chr1.2:84164372-84164391 None:intergenic 40.0%
ATCCTTCTGAATCTGAACCA+GGG + chr1.2:84164337-84164356 MS.gene23916:CDS 40.0%
ATGATGATTGCTTGCTTCCA+TGG + chr1.2:84164610-84164629 MS.gene23916:intron 40.0%
CACATTCTTCGAGAAAACCT+TGG - chr1.2:84164074-84164093 None:intergenic 40.0%
GAAAGGTTCAGAATCATCGT+CGG - chr1.2:84164037-84164056 None:intergenic 40.0%
GAAGGGATGGAATGGAAATT+CGG - chr1.2:84164175-84164194 None:intergenic 40.0%
GAATTGAATGTTTGCACCGT+CGG - chr1.2:84164307-84164326 None:intergenic 40.0%
GAGAATGATCCGAATCGTTA+CGG + chr1.2:84164432-84164451 MS.gene23916:CDS 40.0%
GAGTTATGCAATTCAAGCCA+TGG - chr1.2:84164630-84164649 None:intergenic 40.0%
GCAATTCATGTCGACAAACA+GGG - chr1.2:84164656-84164675 None:intergenic 40.0%
GGAAAATCACGTTAGGGTTA+GGG - chr1.2:84164113-84164132 None:intergenic 40.0%
GTGAAAGGGGATTTGGAAAT+AGG + chr1.2:84164883-84164902 MS.gene23916:CDS 40.0%
GTTCAACAACGCATCATCAA+CGG - chr1.2:84164505-84164524 None:intergenic 40.0%
TGAAGCGGAAAATCACGTTA+GGG - chr1.2:84164119-84164138 None:intergenic 40.0%
TGGAAACGGAAGCAGAATTA+AGG - chr1.2:84164215-84164234 None:intergenic 40.0%
TGTCAGGATGAGTTTGAGAA+AGG + chr1.2:84164549-84164568 MS.gene23916:CDS 40.0%
TTAATTCTGCTTCCGTTTCC+AGG + chr1.2:84164214-84164233 MS.gene23916:CDS 40.0%
TTGAAGCGGAAAATCACGTT+AGG - chr1.2:84164120-84164139 None:intergenic 40.0%
! ATATCTCTGCGGTATCCTTT+TGG + chr1.2:84164834-84164853 MS.gene23916:intron 40.0%
! ATGATTCTGAAGGAAAGCGA+AGG - chr1.2:84164268-84164287 None:intergenic 40.0%
! ATTCTGAAAGTTCTGTGGAC+AGG - chr1.2:84164816-84164835 None:intergenic 40.0%
! TGAGTTTGAGAAAGGTACAC+AGG + chr1.2:84164557-84164576 MS.gene23916:CDS 40.0%
! TGATGATGCGTTGTTGAACT+CGG + chr1.2:84164506-84164525 MS.gene23916:CDS 40.0%
! TGATGCTGATTATGAGAACC+GGG + chr1.2:84164683-84164702 MS.gene23916:intron 40.0%
! TGATTCTGAAGGAAAGCGAA+GGG - chr1.2:84164267-84164286 None:intergenic 40.0%
!! GAATCAATGTGCTGTTTGTC+AGG + chr1.2:84164533-84164552 MS.gene23916:CDS 40.0%
AACCCTGGTTCAGATTCAGA+AGG - chr1.2:84164342-84164361 None:intergenic 45.0%
AACCTTGGCGATTACTTCCT+CGG + chr1.2:84164375-84164394 MS.gene23916:CDS 45.0%
ATCACGTTAGGGTTAGGGTT+AGG - chr1.2:84164108-84164127 None:intergenic 45.0%
CATCCTTCTGAATCTGAACC+AGG + chr1.2:84164336-84164355 MS.gene23916:CDS 45.0%
CGGAAAATCACGTTAGGGTT+AGG - chr1.2:84164114-84164133 None:intergenic 45.0%
CTGAATCTGAACCAGGGTTT+CGG + chr1.2:84164343-84164362 MS.gene23916:CDS 45.0%
GAAGTAATCGCCAAGGTTAG+AGG - chr1.2:84164373-84164392 None:intergenic 45.0%
GCAGAGTCATCTGAACCAAA+AGG - chr1.2:84164852-84164871 None:intergenic 45.0%
GGCAATTCATGTCGACAAAC+AGG - chr1.2:84164657-84164676 None:intergenic 45.0%
GGCTGTTAAGAATCTTCCGA+CGG + chr1.2:84164476-84164495 MS.gene23916:CDS 45.0%
GTTAGGGTTAGGGTTAGGTT+CGG - chr1.2:84164103-84164122 None:intergenic 45.0%
TGAATCTGAACCAGGGTTTC+GGG + chr1.2:84164344-84164363 MS.gene23916:CDS 45.0%
TGATTATGAGAACCGGGGTA+GGG + chr1.2:84164689-84164708 MS.gene23916:intron 45.0%
TGGAAGCAAATTGGGCAGAA+AGG - chr1.2:84164054-84164073 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGTTC+GGG - chr1.2:84164102-84164121 None:intergenic 45.0%
! AGTAATGGGAGAAGAGCGAA+GGG - chr1.2:84164192-84164211 None:intergenic 45.0%
! GATGCTGATTATGAGAACCG+GGG + chr1.2:84164684-84164703 MS.gene23916:intron 45.0%
! GATTCTGAAGGAAAGCGAAG+GGG - chr1.2:84164266-84164285 None:intergenic 45.0%
! GCAATTGATTCAGCAGCTTG+CGG + chr1.2:84164410-84164429 MS.gene23916:CDS 45.0%
! TTCTGCCCAATTTGCTTCCA+AGG + chr1.2:84164054-84164073 MS.gene23916:CDS 45.0%
!! GATCGTGATGATGGTTGAAG+CGG - chr1.2:84164134-84164153 None:intergenic 45.0%
AGAAGAGCGAAGGGATGGAA+TGG - chr1.2:84164183-84164202 None:intergenic 50.0%
AGCGAAGGGGTCGAAACTAT+CGG - chr1.2:84164253-84164272 None:intergenic 50.0%
CGAAACTATCGGAATCGGGT+CGG - chr1.2:84164242-84164261 None:intergenic 50.0%
CGGAGGAATGATCGTGATGA+TGG - chr1.2:84164143-84164162 None:intergenic 50.0%
CTGATTATGAGAACCGGGGT+AGG + chr1.2:84164688-84164707 MS.gene23916:intron 50.0%
GAAACTATCGGAATCGGGTC+GGG - chr1.2:84164241-84164260 None:intergenic 50.0%
GACTCTGGTGAAAGGGGATT+TGG + chr1.2:84164876-84164895 MS.gene23916:CDS 50.0%
GGCCGTTGAGATGATTCTGA+AGG - chr1.2:84164278-84164297 None:intergenic 50.0%
GGGGTCGAAACTATCGGAAT+CGG - chr1.2:84164247-84164266 None:intergenic 50.0%
GGGTCGAAACTATCGGAATC+GGG - chr1.2:84164246-84164265 None:intergenic 50.0%
TGCTCAGGACTCTGGTGAAA+GGG + chr1.2:84164869-84164888 MS.gene23916:CDS 50.0%
TGGTTCAGATGACTCTGCTC+AGG + chr1.2:84164854-84164873 MS.gene23916:intron 50.0%
TTAACAGCCTCTTTCGACGC+CGG - chr1.2:84164465-84164484 None:intergenic 50.0%
TTCAGAATCATCGTCGGTGC+AGG - chr1.2:84164031-84164050 None:intergenic 50.0%
! GAGTAATGGGAGAAGAGCGA+AGG - chr1.2:84164193-84164212 None:intergenic 50.0%
!! GATGGGTTGAGGTCTGTTGT+TGG + chr1.2:84164726-84164745 MS.gene23916:intron 50.0%
!! GTTGGTGGTAACAGTACCGT+TGG + chr1.2:84164744-84164763 MS.gene23916:intron 50.0%
!! TTTCGGGTTCCCTCTAACCT+TGG + chr1.2:84164360-84164379 MS.gene23916:CDS 50.0%
AACCGGGGTAGGGATGGTAA+CGG + chr1.2:84164699-84164718 MS.gene23916:intron 55.0%
ATGGGAGAAGAGCGAAGGGA+TGG - chr1.2:84164188-84164207 None:intergenic 55.0%
CACCGAGGAAGTAATCGCCA+AGG - chr1.2:84164380-84164399 None:intergenic 55.0%
CTGCTCAGGACTCTGGTGAA+AGG + chr1.2:84164868-84164887 MS.gene23916:CDS 55.0%
GATGACTCTGCTCAGGACTC+TGG + chr1.2:84164861-84164880 MS.gene23916:intron 55.0%
GCATCATCAACGGTCACCGT+CGG - chr1.2:84164495-84164514 None:intergenic 55.0%
GCTCAGGACTCTGGTGAAAG+GGG + chr1.2:84164870-84164889 MS.gene23916:CDS 55.0%
GGGTTGAGGTCTGTTGTTGG+TGG + chr1.2:84164729-84164748 MS.gene23916:intron 55.0%
GGTGGTAACAGTACCGTTGG+TGG + chr1.2:84164747-84164766 MS.gene23916:intron 55.0%
TAACTCTCCGACTGCACACG+TGG - chr1.2:84164008-84164027 None:intergenic 55.0%
TATGAGAACCGGGGTAGGGA+TGG + chr1.2:84164693-84164712 MS.gene23916:intron 55.0%
TCTTCTGCCACGTGTGCAGT+CGG + chr1.2:84163998-84164017 MS.gene23916:CDS 55.0%
TTAGAGGGAACCCGAAACCC+TGG - chr1.2:84164357-84164376 None:intergenic 55.0%
! GGTAACAGTACCGTTGGTGG+TGG + chr1.2:84164750-84164769 MS.gene23916:intron 55.0%
!! AACAGTACCGTTGGTGGTGG+TGG + chr1.2:84164753-84164772 MS.gene23916:intron 55.0%
ACCACCACCACCACCACCAA+CGG - chr1.2:84164763-84164782 None:intergenic 60.0%
ATCGGGTCGGGTCCTGGAAA+CGG - chr1.2:84164229-84164248 None:intergenic 60.0%
ATGTCTTCTGGCGGCGATGG+CGG + chr1.2:84163952-84163971 MS.gene23916:CDS 60.0%
ATTGCTCGAAGCCAGCACCG+AGG - chr1.2:84164395-84164414 None:intergenic 60.0%
CACCGTTACCATCCCTACCC+CGG - chr1.2:84164704-84164723 None:intergenic 60.0%
GAATCGTTACGGCACACCGC+CGG + chr1.2:84164443-84164462 MS.gene23916:CDS 60.0%
GGCGGTGTGCCGTAACGATT+CGG - chr1.2:84164444-84164463 None:intergenic 60.0%
TGTTTGCACCGTCGGCGTGA+AGG - chr1.2:84164299-84164318 None:intergenic 60.0%
! GGCGATTACTTCCTCGGTGC+TGG + chr1.2:84164381-84164400 MS.gene23916:CDS 60.0%
!! AGGGATGGTAACGGTGGCGA+TGG + chr1.2:84164708-84164727 MS.gene23916:intron 60.0%
!! AGTACCGTTGGTGGTGGTGG+TGG + chr1.2:84164756-84164775 MS.gene23916:intron 60.0%
!! GGGATGGTAACGGTGGCGAT+GGG + chr1.2:84164709-84164728 MS.gene23916:intron 60.0%
!! GTAACGGTGGCGATGGGTTG+AGG + chr1.2:84164715-84164734 MS.gene23916:intron 60.0%
ACAGCCTCTTTCGACGCCGG+CGG - chr1.2:84164462-84164481 None:intergenic 65.0%
ATCGGAATCGGGTCGGGTCC+TGG - chr1.2:84164235-84164254 None:intergenic 65.0%
CTCAACGGCCTTCACGCCGA+CGG + chr1.2:84164288-84164307 MS.gene23916:CDS 65.0%
! GGTGGTGGTAGCAGTGGTGG+TGG + chr1.2:84164777-84164796 MS.gene23916:intron 65.0%
!! ACCGTTGGTGGTGGTGGTGG+TGG + chr1.2:84164759-84164778 MS.gene23916:intron 65.0%
!! CGGGGTAGGGATGGTAACGG+TGG + chr1.2:84164702-84164721 MS.gene23916:intron 65.0%
!! GGTAGCAGTGGTGGTGGAGG+AGG + chr1.2:84164783-84164802 MS.gene23916:intron 65.0%
!! GGTGGTAGCAGTGGTGGTGG+AGG + chr1.2:84164780-84164799 MS.gene23916:intron 65.0%
!! GGTGGTGGTGGTAGCAGTGG+TGG + chr1.2:84164774-84164793 MS.gene23916:intron 65.0%
!! GGTGGTGGTGGTGGTAGCAG+TGG + chr1.2:84164771-84164790 MS.gene23916:intron 65.0%
!! GTTGGTGGTGGTGGTGGTGG+TGG + chr1.2:84164762-84164781 MS.gene23916:intron 65.0%
! CACACCGCCGGCGTCGAAAG+AGG + chr1.2:84164455-84164474 MS.gene23916:CDS 70.0%
! TCTTCTGGCGGCGATGGCGG+TGG + chr1.2:84163955-84163974 MS.gene23916:CDS 70.0%
! TCTGGCGGCGATGGCGGTGG+TGG + chr1.2:84163958-84163977 MS.gene23916:CDS 75.0%
!! GATGGCGGTGGTGGCGGTGG+AGG + chr1.2:84163967-84163986 MS.gene23916:CDS 75.0%
!! GGCGGCGATGGCGGTGGTGG+CGG + chr1.2:84163961-84163980 MS.gene23916:CDS 80.0%
!!! GGCGATGGCGGTGGTGGCGG+TGG + chr1.2:84163964-84163983 MS.gene23916:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 84163952 84164928 84163952 ID=MS.gene23916
chr1.2 mRNA 84163952 84164928 84163952 ID=MS.gene23916.t1;Parent=MS.gene23916
chr1.2 exon 84163952 84164578 84163952 ID=MS.gene23916.t1.exon1;Parent=MS.gene23916.t1
chr1.2 CDS 84163952 84164578 84163952 ID=cds.MS.gene23916.t1;Parent=MS.gene23916.t1
chr1.2 exon 84164862 84164928 84164862 ID=MS.gene23916.t1.exon2;Parent=MS.gene23916.t1
chr1.2 CDS 84164862 84164928 84164862 ID=cds.MS.gene23916.t1;Parent=MS.gene23916.t1
Gene Sequence

>MS.gene23916

ATGTCTTCTGGCGGCGATGGCGGTGGTGGCGGTGGAGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACCTGCACCGACGATGATTCTGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTTCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCAGGACCCGACCCGATTCCGATAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGGGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTTGCGGAGAATGATCCGAATCGTTACGGCACACCGCCGGCGTCGAAAGAGGCTGTTAAGAATCTTCCGACGGTGACCGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACACAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGGTAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACCGTTGGTGGTGGTGGTGGTGGTGGTAGCAGTGGTGGTGGAGGAGGAAATAGACCTGTCCACAGAACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGATGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGAAAGTT
Protein sequence

>MS.gene23916.t1

MSSGGDGGGGGGGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLNSELNQCAVCQDEFEKGTQMTLLRTLVKGDLEIGKKIWIES