Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019141.t1 | PNY05077.1 | 77 | 513 | 86 | 6 | 2 | 485 | 20 | 529 | 6.60E-211 | 743.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019141.t1 | O49696 | 57.1 | 515 | 145 | 7 | 10 | 457 | 28 | 533 | 8.5e-151 | 535.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019141.t1 | A0A2K3NPY2 | 77.0 | 513 | 86 | 6 | 2 | 485 | 20 | 529 | 4.7e-211 | 743.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058007 | MS.gene019141 | PPI |
| MS.gene011647 | MS.gene019141 | PPI |
| MS.gene019141 | MS.gene011649 | PPI |
| MS.gene019141 | MS.gene011648 | PPI |
| MS.gene019141 | MS.gene015314 | PPI |
| MS.gene019141 | MS.gene09658 | PPI |
| MS.gene019141 | MS.gene60396 | PPI |
| MS.gene019141 | MS.gene059674 | PPI |
| MS.gene60398 | MS.gene019141 | PPI |
| MS.gene46347 | MS.gene019141 | PPI |
| MS.gene019141 | MS.gene058006 | PPI |
| MS.gene019141 | MS.gene21471 | PPI |
| MS.gene019141 | MS.gene46346 | PPI |
| MS.gene019141 | MS.gene60397 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019141.t1 | MTR_4g098570 | 76.367 | 512 | 90 | 6 | 2 | 485 | 26 | 534 | 0.0 | 754 |
| MS.gene019141.t1 | MTR_4g098610 | 71.820 | 511 | 115 | 4 | 2 | 485 | 26 | 534 | 0.0 | 691 |
| MS.gene019141.t1 | MTR_5g014310 | 66.281 | 519 | 135 | 7 | 3 | 485 | 35 | 549 | 0.0 | 654 |
| MS.gene019141.t1 | MTR_1g115175 | 56.046 | 521 | 188 | 8 | 3 | 485 | 15 | 532 | 0.0 | 563 |
| MS.gene019141.t1 | MTR_1g115140 | 54.231 | 520 | 199 | 6 | 3 | 485 | 19 | 536 | 0.0 | 548 |
| MS.gene019141.t1 | MTR_1g115190 | 56.130 | 522 | 187 | 9 | 3 | 484 | 16 | 535 | 0.0 | 543 |
| MS.gene019141.t1 | MTR_1g077670 | 36.000 | 450 | 253 | 8 | 7 | 455 | 34 | 449 | 1.70e-87 | 276 |
| MS.gene019141.t1 | MTR_1g077660 | 36.000 | 450 | 245 | 9 | 8 | 455 | 29 | 437 | 2.25e-86 | 273 |
| MS.gene019141.t1 | MTR_2g087288 | 34.554 | 437 | 228 | 8 | 25 | 455 | 37 | 421 | 2.49e-79 | 254 |
| MS.gene019141.t1 | MTR_4g051575 | 41.231 | 325 | 184 | 4 | 25 | 347 | 41 | 360 | 1.41e-77 | 250 |
| MS.gene019141.t1 | MTR_7g106260 | 35.307 | 456 | 234 | 8 | 19 | 470 | 36 | 434 | 4.44e-77 | 249 |
| MS.gene019141.t1 | MTR_7g094770 | 32.715 | 431 | 234 | 7 | 30 | 455 | 61 | 440 | 1.05e-75 | 244 |
| MS.gene019141.t1 | MTR_1g111250 | 33.888 | 481 | 270 | 9 | 24 | 462 | 73 | 547 | 1.28e-73 | 242 |
| MS.gene019141.t1 | MTR_8g104110 | 31.515 | 495 | 275 | 8 | 24 | 456 | 63 | 555 | 1.25e-70 | 235 |
| MS.gene019141.t1 | MTR_2g087285 | 33.410 | 434 | 242 | 6 | 21 | 454 | 33 | 419 | 3.22e-70 | 231 |
| MS.gene019141.t1 | MTR_6g084680 | 36.467 | 351 | 214 | 6 | 24 | 367 | 83 | 431 | 1.40e-66 | 225 |
| MS.gene019141.t1 | MTR_0710s0020 | 67.073 | 164 | 53 | 1 | 3 | 165 | 16 | 179 | 2.41e-66 | 211 |
| MS.gene019141.t1 | MTR_8g104130 | 36.236 | 356 | 216 | 5 | 21 | 374 | 55 | 401 | 4.58e-62 | 212 |
| MS.gene019141.t1 | MTR_8g104120 | 33.962 | 371 | 234 | 7 | 11 | 374 | 46 | 412 | 6.06e-57 | 199 |
| MS.gene019141.t1 | MTR_4g051575 | 38.326 | 227 | 132 | 5 | 124 | 347 | 5 | 226 | 6.54e-43 | 155 |
| MS.gene019141.t1 | MTR_1g110380 | 40.777 | 103 | 35 | 4 | 102 | 203 | 6 | 83 | 1.43e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019141.t1 | AT5G46610 | 58.200 | 500 | 156 | 8 | 24 | 472 | 40 | 537 | 0.0 | 554 |
| MS.gene019141.t1 | AT5G46600 | 54.930 | 497 | 170 | 7 | 24 | 467 | 41 | 536 | 0.0 | 525 |
| MS.gene019141.t1 | AT4G17970 | 67.024 | 373 | 113 | 4 | 10 | 381 | 28 | 391 | 1.71e-179 | 515 |
| MS.gene019141.t1 | AT4G17970 | 69.492 | 59 | 17 | 1 | 400 | 457 | 475 | 533 | 2.07e-16 | 82.4 |
| MS.gene019141.t1 | AT5G46610 | 54.800 | 500 | 149 | 9 | 24 | 472 | 40 | 513 | 2.13e-176 | 505 |
| MS.gene019141.t1 | AT5G46610 | 52.000 | 500 | 140 | 9 | 24 | 472 | 40 | 490 | 7.49e-161 | 465 |
| MS.gene019141.t1 | AT4G00910 | 32.981 | 473 | 277 | 7 | 5 | 470 | 42 | 481 | 4.32e-88 | 278 |
| MS.gene019141.t1 | AT3G18440 | 33.464 | 511 | 272 | 11 | 24 | 469 | 78 | 585 | 2.36e-76 | 251 |
| MS.gene019141.t1 | AT1G08440 | 39.017 | 346 | 203 | 5 | 25 | 366 | 13 | 354 | 1.33e-74 | 243 |
| MS.gene019141.t1 | AT3G11680 | 35.512 | 459 | 236 | 8 | 8 | 456 | 12 | 420 | 5.22e-72 | 236 |
| MS.gene019141.t1 | AT3G11680 | 35.512 | 459 | 236 | 8 | 8 | 456 | 14 | 422 | 8.20e-72 | 236 |
| MS.gene019141.t1 | AT1G08430 | 38.000 | 350 | 204 | 7 | 25 | 366 | 13 | 357 | 2.94e-67 | 224 |
| MS.gene019141.t1 | AT2G27240 | 36.676 | 349 | 210 | 6 | 25 | 371 | 13 | 352 | 8.34e-65 | 217 |
| MS.gene019141.t1 | AT1G18420 | 35.422 | 367 | 228 | 6 | 22 | 381 | 80 | 444 | 1.68e-64 | 219 |
| MS.gene019141.t1 | AT1G18420 | 35.262 | 363 | 226 | 6 | 26 | 381 | 1 | 361 | 7.80e-63 | 213 |
| MS.gene019141.t1 | AT2G27240 | 34.316 | 373 | 212 | 7 | 25 | 371 | 13 | 378 | 2.57e-61 | 209 |
| MS.gene019141.t1 | AT2G17470 | 29.508 | 488 | 285 | 11 | 25 | 459 | 31 | 512 | 7.71e-60 | 206 |
| MS.gene019141.t1 | AT2G17470 | 29.508 | 488 | 285 | 11 | 25 | 459 | 53 | 534 | 1.35e-59 | 205 |
| MS.gene019141.t1 | AT1G25480 | 30.390 | 487 | 282 | 10 | 24 | 456 | 58 | 541 | 2.52e-59 | 204 |
| MS.gene019141.t1 | AT1G68600 | 29.191 | 507 | 294 | 12 | 11 | 456 | 27 | 529 | 2.85e-56 | 196 |
| MS.gene019141.t1 | AT4G17585 | 61.333 | 75 | 24 | 2 | 10 | 83 | 28 | 98 | 6.45e-20 | 86.7 |
Find 85 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTTTCATCGGTGGATT+TGG | 0.221530 | 3.3:-36292170 | None:intergenic |
| AGATGATCAGAAAGTATTTC+TGG | 0.283677 | 3.3:-36292981 | None:intergenic |
| ATACAAAAGAATTATGATTA+TGG | 0.288084 | 3.3:+36291750 | MS.gene019141:CDS |
| TGAAGGTTATAATGCAGTTT+TGG | 0.288944 | 3.3:+36292144 | MS.gene019141:CDS |
| AATGCATGGATCACCCTTCT+TGG | 0.296126 | 3.3:-36290541 | None:intergenic |
| CTATTGGAACCACTCTATAA+AGG | 0.307242 | 3.3:+36290604 | MS.gene019141:CDS |
| ATATGTACCTTCTAAAGATT+TGG | 0.313382 | 3.3:-36291973 | None:intergenic |
| TCTCAGCCACGACTCTTCTT+AGG | 0.319543 | 3.3:+36293041 | MS.gene019141:CDS |
| TTTGGCTACGCCTTCAAGTT+TGG | 0.344867 | 3.3:-36291955 | None:intergenic |
| GAAATGTTCTTCGTCAATTC+GGG | 0.355547 | 3.3:+36292558 | MS.gene019141:CDS |
| GGAAATGTTCTTCGTCAATT+CGG | 0.359205 | 3.3:+36292557 | MS.gene019141:CDS |
| CTGTTTGAGAACAGAAATTC+AGG | 0.361676 | 3.3:+36292604 | MS.gene019141:CDS |
| GAGAAGCCAGGCGAGTAAAA+TGG | 0.363558 | 3.3:+36293157 | MS.gene019141:CDS |
| AGTATCATTGCTATACCTAT+TGG | 0.367771 | 3.3:+36290588 | MS.gene019141:CDS |
| ATTTGTTAATCTCGAGTTAT+CGG | 0.371295 | 3.3:+36291799 | MS.gene019141:CDS |
| AAAGGACTAAATAGAGCATA+TGG | 0.376564 | 3.3:+36291257 | MS.gene019141:CDS |
| CGCTTCTACACCATAGTCAT+TGG | 0.383492 | 3.3:+36291855 | MS.gene019141:CDS |
| GTTTGGCTTGGAACACTACT+TGG | 0.397328 | 3.3:+36290500 | MS.gene019141:CDS |
| TTCTCCAAACCATCATCTCT+TGG | 0.412814 | 3.3:-36293353 | None:intergenic |
| ATTGATGAAGTTGAAGAACT+TGG | 0.413101 | 3.3:+36293269 | MS.gene019141:CDS |
| TATTGGAACCACTCTATAAA+GGG | 0.415893 | 3.3:+36290605 | MS.gene019141:CDS |
| CTTTATAGAGTGGTTCCAAT+AGG | 0.416567 | 3.3:-36290603 | None:intergenic |
| CCGCAACAATGTTATTTGAT+TGG | 0.419195 | 3.3:-36293076 | None:intergenic |
| AACACCACAACCAATGACTA+TGG | 0.421108 | 3.3:-36291865 | None:intergenic |
| GATTGGCCAGCACGCTAGTT+GGG | 0.426229 | 3.3:+36290627 | MS.gene019141:CDS |
| TTGGCATTTCCAAATTGGTC+GGG | 0.435410 | 3.3:+36291906 | MS.gene019141:CDS |
| GGATTGGCCAGCACGCTAGT+TGG | 0.436721 | 3.3:+36290626 | MS.gene019141:CDS |
| TCGACAGCTTCCAAACTTGA+AGG | 0.438588 | 3.3:+36291945 | MS.gene019141:CDS |
| AAAGAAGCAAAAGCAGCAAA+AGG | 0.440203 | 3.3:-36293212 | None:intergenic |
| TGGCAACAATATGTAAAAGT+TGG | 0.448152 | 3.3:+36292536 | MS.gene019141:CDS |
| GAAACCAAGAGATGATGGTT+TGG | 0.454917 | 3.3:+36293349 | MS.gene019141:CDS |
| TACACCATAGTCATTGGTTG+TGG | 0.460319 | 3.3:+36291861 | MS.gene019141:CDS |
| GCGTCGACTCTTTATGCTGT+TGG | 0.462173 | 3.3:-36292949 | None:intergenic |
| GAGAACAATTTACCTTCTCA+TGG | 0.468672 | 3.3:+36293371 | MS.gene019141:CDS |
| TTTGTTAATCTCGAGTTATC+GGG | 0.468833 | 3.3:+36291800 | MS.gene019141:CDS |
| ATCAGTTCGAGTACAATTCC+AGG | 0.473859 | 3.3:+36292875 | MS.gene019141:CDS |
| CTAGCATTATGCAAGGATCC+TGG | 0.477060 | 3.3:-36292893 | None:intergenic |
| ACCATAGCTGCTGCAAAAGC+AGG | 0.490985 | 3.3:+36293101 | MS.gene019141:CDS |
| TGGAAGCTGTCGAATTATGT+AGG | 0.494355 | 3.3:-36291935 | None:intergenic |
| TCTGAGAAACCAAGAGATGA+TGG | 0.501505 | 3.3:+36293344 | MS.gene019141:CDS |
| GTGATCCATGCATTCAAAGT+TGG | 0.506966 | 3.3:+36290550 | MS.gene019141:CDS |
| TTGATGAAGTTGAAGAACTT+GGG | 0.511441 | 3.3:+36293270 | MS.gene019141:CDS |
| GCAGGCATTACATGCAAGTA+AGG | 0.512616 | 3.3:+36292478 | MS.gene019141:intron |
| TTTGGCATTTCCAAATTGGT+CGG | 0.514424 | 3.3:+36291905 | MS.gene019141:CDS |
| GAACCACTCTATAAAGGGAT+TGG | 0.523484 | 3.3:+36290610 | MS.gene019141:CDS |
| AAAGTATTTCTGGTGAGCAT+TGG | 0.524561 | 3.3:-36292971 | None:intergenic |
| ATGAACCAACTTTGAATGCA+TGG | 0.529901 | 3.3:-36290555 | None:intergenic |
| AATTGTACTCGAACTGATCC+CGG | 0.533945 | 3.3:-36292870 | None:intergenic |
| AGAACAATTTACCTTCTCAT+GGG | 0.537533 | 3.3:+36293372 | MS.gene019141:CDS |
| CGAGAAATACATGTTTCTGA+TGG | 0.538073 | 3.3:+36292091 | MS.gene019141:CDS |
| CAAATCCACCGATGAAACAT+TGG | 0.538377 | 3.3:+36292171 | MS.gene019141:CDS |
| TGGAACACTACTTGGAAAGT+AGG | 0.544404 | 3.3:+36290508 | MS.gene019141:CDS |
| AAAGGAAGTGGTGAGAAGCC+AGG | 0.544545 | 3.3:+36293145 | MS.gene019141:CDS |
| GGCGTAGCCAAATCTTTAGA+AGG | 0.548050 | 3.3:+36291966 | MS.gene019141:CDS |
| TCTGAAGATATAATATATGA+AGG | 0.552789 | 3.3:+36292127 | MS.gene019141:CDS |
| TGGCATTTCCAAATTGGTCG+GGG | 0.556663 | 3.3:+36291907 | MS.gene019141:CDS |
| TTGCATAATGCTAGCAGTAG+AGG | 0.559546 | 3.3:+36292902 | MS.gene019141:CDS |
| GCATATGGGACACTATTAGC+AGG | 0.562768 | 3.3:+36291272 | MS.gene019141:CDS |
| TGGCCAATCCCTTTATAGAG+TGG | 0.573120 | 3.3:-36290613 | None:intergenic |
| TAGGATGTGATGATCCAAGA+AGG | 0.573463 | 3.3:+36290527 | MS.gene019141:CDS |
| AGTACTTACCAATGTTTCAT+CGG | 0.573677 | 3.3:-36292179 | None:intergenic |
| TGACAGCCCAACTAGCGTGC+TGG | 0.577693 | 3.3:-36290633 | None:intergenic |
| ACTTACCAATGTTTCATCGG+TGG | 0.581716 | 3.3:-36292176 | None:intergenic |
| AGGAATGAACCTCATATATG+TGG | 0.584467 | 3.3:-36291724 | None:intergenic |
| GATCTGCAGCCACATATATG+AGG | 0.588489 | 3.3:+36291715 | MS.gene019141:CDS |
| TGACAGTACCTAGAAAACCT+TGG | 0.588885 | 3.3:-36292503 | None:intergenic |
| GGCTGTCATAACCGTCGTCG+TGG | 0.596355 | 3.3:+36290648 | MS.gene019141:CDS |
| AAGGACTAAATAGAGCATAT+GGG | 0.606495 | 3.3:+36291258 | MS.gene019141:CDS |
| TACATGCAAGTAAGGAACCA+AGG | 0.606846 | 3.3:+36292486 | MS.gene019141:CDS |
| GAACAATTTACCTTCTCATG+GGG | 0.607787 | 3.3:+36293373 | MS.gene019141:CDS |
| GGTACTGTCACAAATTTCCA+TGG | 0.611616 | 3.3:+36292516 | MS.gene019141:CDS |
| TGCTTCAAAGAGTATACACC+TGG | 0.616472 | 3.3:+36293302 | MS.gene019141:CDS |
| GCAGGGGAAACTTTATGCAA+AGG | 0.617655 | 3.3:+36291239 | MS.gene019141:intron |
| TATACGTTAGTAGCACTACA+TGG | 0.618094 | 3.3:+36292581 | MS.gene019141:CDS |
| CCAATCAAATAACATTGTTG+CGG | 0.620652 | 3.3:+36293076 | MS.gene019141:CDS |
| CTAACAGAAAATTCATCACC+AGG | 0.621086 | 3.3:-36293320 | None:intergenic |
| ATGAAGTTGAAGAACTTGGG+AGG | 0.621721 | 3.3:+36293273 | MS.gene019141:CDS |
| AAAGAATTATGATTATGGTG+TGG | 0.628742 | 3.3:+36291755 | MS.gene019141:CDS |
| TCTACTGCTAGCATTATGCA+AGG | 0.634243 | 3.3:-36292900 | None:intergenic |
| TTAGATCCTAAGAAGAGTCG+TGG | 0.645776 | 3.3:-36293047 | None:intergenic |
| GTAGTGTTCCAAGCCAAACA+AGG | 0.650407 | 3.3:-36290496 | None:intergenic |
| AGGATGTGATGATCCAAGAA+GGG | 0.652421 | 3.3:+36290528 | MS.gene019141:CDS |
| GGCATTTCCAAATTGGTCGG+GGG | 0.657317 | 3.3:+36291908 | MS.gene019141:CDS |
| GAACTCGAAAACCACGACGA+CGG | 0.657825 | 3.3:-36290659 | None:intergenic |
| AACAATTTACCTTCTCATGG+GGG | 0.679321 | 3.3:+36293374 | MS.gene019141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAAAGAATTATGATTA+TGG | + | chr3.3:36291750-36291769 | MS.gene019141:CDS | 15.0% |
| !! | ATATAGTTATTAGAATTAGT+TGG | + | chr3.3:36290793-36290812 | MS.gene019141:intron | 15.0% |
| !! | ATATCTAAATTTATTGTGAA+TGG | + | chr3.3:36291689-36291708 | MS.gene019141:intron | 15.0% |
| !! | CATTATATATATAGTAACAT+AGG | + | chr3.3:36291165-36291184 | MS.gene019141:intron | 15.0% |
| !! | TTATATAGTATTCATAATCA+AGG | - | chr3.3:36290974-36290993 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTAGAATTG+AGG | - | chr3.3:36291657-36291676 | None:intergenic | 15.0% |
| !! | CATATTACAATGAATGAAAA+TGG | + | chr3.3:36292673-36292692 | MS.gene019141:intron | 20.0% |
| !! | TCTGAAGATATAATATATGA+AGG | + | chr3.3:36292127-36292146 | MS.gene019141:CDS | 20.0% |
| !! | TTTCACAATAAATATGTTGT+TGG | - | chr3.3:36291518-36291537 | None:intergenic | 20.0% |
| !!! | CTAGTTTATTTTGATTTTGA+TGG | + | chr3.3:36291217-36291236 | MS.gene019141:intron | 20.0% |
| !!! | GATTTTGTTTCAAATTCATT+TGG | + | chr3.3:36291314-36291333 | MS.gene019141:CDS | 20.0% |
| !!! | TAACATTTTATTGTAATGTG+CGG | + | chr3.3:36292035-36292054 | MS.gene019141:intron | 20.0% |
| !!! | TCATAATTCTTTTGTATACA+AGG | - | chr3.3:36291747-36291766 | None:intergenic | 20.0% |
| !!! | TGTCAAATTCATATTTTGAA+TGG | + | chr3.3:36291995-36292014 | MS.gene019141:intron | 20.0% |
| ! | AAAGAATTATGATTATGGTG+TGG | + | chr3.3:36291755-36291774 | MS.gene019141:CDS | 25.0% |
| ! | AAAGTTTGAGTAACTACAAA+CGG | - | chr3.3:36291594-36291613 | None:intergenic | 25.0% |
| ! | CGAGAAAATCTTATATTACA+TGG | + | chr3.3:36292806-36292825 | MS.gene019141:intron | 25.0% |
| ! | CTAAATTTATTGTGAATGGT+AGG | + | chr3.3:36291693-36291712 | MS.gene019141:intron | 25.0% |
| ! | GTAACATAACTTAACTTTGT+TGG | + | chr3.3:36292626-36292645 | MS.gene019141:intron | 25.0% |
| !! | ATATGTACCTTCTAAAGATT+TGG | - | chr3.3:36291976-36291995 | None:intergenic | 25.0% |
| !! | ATTTGTTAATCTCGAGTTAT+CGG | + | chr3.3:36291799-36291818 | MS.gene019141:CDS | 25.0% |
| !! | ATTTTTGTTGAGAGACTAAA+AGG | + | chr3.3:36290469-36290488 | MS.gene019141:CDS | 25.0% |
| !! | TATGTTTCTACTGTTAAAAG+TGG | - | chr3.3:36292657-36292676 | None:intergenic | 25.0% |
| !!! | ATTTGTTACCTTGATTTTCT+TGG | + | chr3.3:36290866-36290885 | MS.gene019141:intron | 25.0% |
| !!! | TTATTTTGATTTTGATGGCA+GGG | + | chr3.3:36291222-36291241 | MS.gene019141:intron | 25.0% |
| !!! | TTTATTTTGATTTTGATGGC+AGG | + | chr3.3:36291221-36291240 | MS.gene019141:intron | 25.0% |
| AAAGGACTAAATAGAGCATA+TGG | + | chr3.3:36291257-36291276 | MS.gene019141:CDS | 30.0% | |
| AAGGACTAAATAGAGCATAT+GGG | + | chr3.3:36291258-36291277 | MS.gene019141:CDS | 30.0% | |
| ACTAGAAATTACACTCATTC+AGG | - | chr3.3:36291202-36291221 | None:intergenic | 30.0% | |
| AGAACAATTTACCTTCTCAT+GGG | + | chr3.3:36293372-36293391 | MS.gene019141:CDS | 30.0% | |
| AGTACTTACCAATGTTTCAT+CGG | - | chr3.3:36292182-36292201 | None:intergenic | 30.0% | |
| AGTATCATTGCTATACCTAT+TGG | + | chr3.3:36290588-36290607 | MS.gene019141:CDS | 30.0% | |
| ATTGATGAAGTTGAAGAACT+TGG | + | chr3.3:36293269-36293288 | MS.gene019141:CDS | 30.0% | |
| CATAAAATATGCAAGATCTG+AGG | - | chr3.3:36290910-36290929 | None:intergenic | 30.0% | |
| CCAATCAAATAACATTGTTG+CGG | + | chr3.3:36293076-36293095 | MS.gene019141:CDS | 30.0% | |
| GAAATTAGAGTTTGACAGAA+TGG | - | chr3.3:36291038-36291057 | None:intergenic | 30.0% | |
| GTATTTAAGTACTTGATCAC+AGG | + | chr3.3:36291550-36291569 | MS.gene019141:intron | 30.0% | |
| TATTGGAACCACTCTATAAA+GGG | + | chr3.3:36290605-36290624 | MS.gene019141:CDS | 30.0% | |
| TGGCAACAATATGTAAAAGT+TGG | + | chr3.3:36292536-36292555 | MS.gene019141:CDS | 30.0% | |
| TTCAGAACAGAATCATTTGA+AGG | - | chr3.3:36292454-36292473 | None:intergenic | 30.0% | |
| TTGATGAAGTTGAAGAACTT+GGG | + | chr3.3:36293270-36293289 | MS.gene019141:CDS | 30.0% | |
| TTTGTTAATCTCGAGTTATC+GGG | + | chr3.3:36291800-36291819 | MS.gene019141:CDS | 30.0% | |
| ! | ACTAAAAGGTTTTCCTTGTT+TGG | + | chr3.3:36290483-36290502 | MS.gene019141:CDS | 30.0% |
| ! | ACTTTTACATATTGTTGCCA+TGG | - | chr3.3:36292536-36292555 | None:intergenic | 30.0% |
| ! | TGAAGGTTATAATGCAGTTT+TGG | + | chr3.3:36292144-36292163 | MS.gene019141:CDS | 30.0% |
| !! | AAAACAGAACCAACTGATTT+TGG | - | chr3.3:36290710-36290729 | None:intergenic | 30.0% |
| !! | AGATGATCAGAAAGTATTTC+TGG | - | chr3.3:36292984-36293003 | None:intergenic | 30.0% |
| !! | ATCTTTCAAGCTGTTTTCAT+TGG | + | chr3.3:36291341-36291360 | MS.gene019141:CDS | 30.0% |
| !! | ATTTTCTCGCTTTTAGTCAT+TGG | - | chr3.3:36292795-36292814 | None:intergenic | 30.0% |
| !!! | GTTTTTTGGCATTTCCAAAT+TGG | + | chr3.3:36291901-36291920 | MS.gene019141:CDS | 30.0% |
| !!! | TATTTTGATTTTGATGGCAG+GGG | + | chr3.3:36291223-36291242 | MS.gene019141:intron | 30.0% |
| !!! | TTGTCTCTTGATGAGTTTTT+TGG | + | chr3.3:36291887-36291906 | MS.gene019141:CDS | 30.0% |
| !!! | TTTTTTCACTGTACACAGTT+AGG | - | chr3.3:36292423-36292442 | None:intergenic | 30.0% |
| !!! | TTTTTTTCTTTTGCAGACAC+CGG | + | chr3.3:36292851-36292870 | MS.gene019141:intron | 30.0% |
| AAAGAAGCAAAAGCAGCAAA+AGG | - | chr3.3:36293215-36293234 | None:intergenic | 35.0% | |
| AACAAGACAGACGTCAAAAA+AGG | + | chr3.3:36293127-36293146 | MS.gene019141:CDS | 35.0% | |
| AACAATTTACCTTCTCATGG+GGG | + | chr3.3:36293374-36293393 | MS.gene019141:CDS | 35.0% | |
| ACTTCCTATCCAAAATCAGT+TGG | + | chr3.3:36290698-36290717 | MS.gene019141:intron | 35.0% | |
| AGCAACTAGTGCTAAATCAA+CGG | - | chr3.3:36292310-36292329 | None:intergenic | 35.0% | |
| AGGAATGAACCTCATATATG+TGG | - | chr3.3:36291727-36291746 | None:intergenic | 35.0% | |
| ATGAACCAACTTTGAATGCA+TGG | - | chr3.3:36290558-36290577 | None:intergenic | 35.0% | |
| CTAACAGAAAATTCATCACC+AGG | - | chr3.3:36293323-36293342 | None:intergenic | 35.0% | |
| CTATTGGAACCACTCTATAA+AGG | + | chr3.3:36290604-36290623 | MS.gene019141:CDS | 35.0% | |
| CTGTTTGAGAACAGAAATTC+AGG | + | chr3.3:36292604-36292623 | MS.gene019141:CDS | 35.0% | |
| CTTTATAGAGTGGTTCCAAT+AGG | - | chr3.3:36290606-36290625 | None:intergenic | 35.0% | |
| GAAATGTTCTTCGTCAATTC+GGG | + | chr3.3:36292558-36292577 | MS.gene019141:CDS | 35.0% | |
| GAACAATTTACCTTCTCATG+GGG | + | chr3.3:36293373-36293392 | MS.gene019141:CDS | 35.0% | |
| GAGAACAATTTACCTTCTCA+TGG | + | chr3.3:36293371-36293390 | MS.gene019141:CDS | 35.0% | |
| GGAAATGTTCTTCGTCAATT+CGG | + | chr3.3:36292557-36292576 | MS.gene019141:CDS | 35.0% | |
| TAGGAAGTGATATATACCTG+CGG | - | chr3.3:36290686-36290705 | None:intergenic | 35.0% | |
| TATACGTTAGTAGCACTACA+TGG | + | chr3.3:36292581-36292600 | MS.gene019141:CDS | 35.0% | |
| TGAACTTAGCTCAGTTTGTA+AGG | - | chr3.3:36290939-36290958 | None:intergenic | 35.0% | |
| TGATTTAGCACTAGTTGCTT+CGG | + | chr3.3:36292311-36292330 | MS.gene019141:intron | 35.0% | |
| TTTGGCATTTCCAAATTGGT+CGG | + | chr3.3:36291905-36291924 | MS.gene019141:CDS | 35.0% | |
| ! | AAAGAAGTTAGTAGCGCTTT+TGG | - | chr3.3:36292833-36292852 | None:intergenic | 35.0% |
| ! | CCGCAACAATGTTATTTGAT+TGG | - | chr3.3:36293079-36293098 | None:intergenic | 35.0% |
| ! | CGAGAAATACATGTTTCTGA+TGG | + | chr3.3:36292091-36292110 | MS.gene019141:CDS | 35.0% |
| ! | TGCTTTTGCTTCTTTGCTTT+TGG | + | chr3.3:36293220-36293239 | MS.gene019141:CDS | 35.0% |
| ! | TGTTACCTTGATTTTCTTGG+TGG | + | chr3.3:36290869-36290888 | MS.gene019141:intron | 35.0% |
| ! | TTTTCTTTCAATCACGCTGA+CGG | - | chr3.3:36291472-36291491 | None:intergenic | 35.0% |
| !! | AAAGTATTTCTGGTGAGCAT+TGG | - | chr3.3:36292974-36292993 | None:intergenic | 35.0% |
| !! | AGAACCAACTGATTTTGGAT+AGG | - | chr3.3:36290705-36290724 | None:intergenic | 35.0% |
| !! | CTATCTTTAAGCTAGTCTTG+AGG | + | chr3.3:36291631-36291650 | MS.gene019141:intron | 35.0% |
| !! | GGTGTTGCAGTTTTTGTAAT+AGG | + | chr3.3:36291362-36291381 | MS.gene019141:CDS | 35.0% |
| !! | TGCTTCTTTGCTTTTGGAAA+CGG | + | chr3.3:36293226-36293245 | MS.gene019141:CDS | 35.0% |
| !!! | TTTTTTCTTTTGCAGACACC+GGG | + | chr3.3:36292852-36292871 | MS.gene019141:intron | 35.0% |
| AACACCACAACCAATGACTA+TGG | - | chr3.3:36291868-36291887 | None:intergenic | 40.0% | |
| AATTGTACTCGAACTGATCC+CGG | - | chr3.3:36292873-36292892 | None:intergenic | 40.0% | |
| ACAGACGTCAAAAAAGGAAG+TGG | + | chr3.3:36293133-36293152 | MS.gene019141:CDS | 40.0% | |
| ACTTACCAATGTTTCATCGG+TGG | - | chr3.3:36292179-36292198 | None:intergenic | 40.0% | |
| AGGATGTGATGATCCAAGAA+GGG | + | chr3.3:36290528-36290547 | MS.gene019141:CDS | 40.0% | |
| ATCAGTTCGAGTACAATTCC+AGG | + | chr3.3:36292875-36292894 | MS.gene019141:CDS | 40.0% | |
| ATGAAGTTGAAGAACTTGGG+AGG | + | chr3.3:36293273-36293292 | MS.gene019141:CDS | 40.0% | |
| CAAATCCACCGATGAAACAT+TGG | + | chr3.3:36292171-36292190 | MS.gene019141:CDS | 40.0% | |
| GAACCACTCTATAAAGGGAT+TGG | + | chr3.3:36290610-36290629 | MS.gene019141:CDS | 40.0% | |
| GCGAAAAAATGTGACTGATG+CGG | + | chr3.3:36290753-36290772 | MS.gene019141:intron | 40.0% | |
| GGTACTGTCACAAATTTCCA+TGG | + | chr3.3:36292516-36292535 | MS.gene019141:CDS | 40.0% | |
| GTGATCCATGCATTCAAAGT+TGG | + | chr3.3:36290550-36290569 | MS.gene019141:CDS | 40.0% | |
| TACATGCAAGTAAGGAACCA+AGG | + | chr3.3:36292486-36292505 | MS.gene019141:CDS | 40.0% | |
| TAGGATGTGATGATCCAAGA+AGG | + | chr3.3:36290527-36290546 | MS.gene019141:CDS | 40.0% | |
| TCTACTGCTAGCATTATGCA+AGG | - | chr3.3:36292903-36292922 | None:intergenic | 40.0% | |
| TCTGAGAAACCAAGAGATGA+TGG | + | chr3.3:36293344-36293363 | MS.gene019141:CDS | 40.0% | |
| TGACAGTACCTAGAAAACCT+TGG | - | chr3.3:36292506-36292525 | None:intergenic | 40.0% | |
| TGGAACACTACTTGGAAAGT+AGG | + | chr3.3:36290508-36290527 | MS.gene019141:CDS | 40.0% | |
| TGGAAGCTGTCGAATTATGT+AGG | - | chr3.3:36291938-36291957 | None:intergenic | 40.0% | |
| TTAGATCCTAAGAAGAGTCG+TGG | - | chr3.3:36293050-36293069 | None:intergenic | 40.0% | |
| TTCTCCAAACCATCATCTCT+TGG | - | chr3.3:36293356-36293375 | None:intergenic | 40.0% | |
| TTGCAAGTTTCAACCGCTAT+TGG | - | chr3.3:36291120-36291139 | None:intergenic | 40.0% | |
| TTGCATAATGCTAGCAGTAG+AGG | + | chr3.3:36292902-36292921 | MS.gene019141:CDS | 40.0% | |
| TTGGCATTTCCAAATTGGTC+GGG | + | chr3.3:36291906-36291925 | MS.gene019141:CDS | 40.0% | |
| ! | CAATGTTTCATCGGTGGATT+TGG | - | chr3.3:36292173-36292192 | None:intergenic | 40.0% |
| ! | GAAACCAAGAGATGATGGTT+TGG | + | chr3.3:36293349-36293368 | MS.gene019141:CDS | 40.0% |
| ! | GATTCTGTTCTGAATTGTGC+AGG | + | chr3.3:36292460-36292479 | MS.gene019141:intron | 40.0% |
| ! | GTAAGGAACCAAGGTTTTCT+AGG | + | chr3.3:36292495-36292514 | MS.gene019141:CDS | 40.0% |
| ! | TACACCATAGTCATTGGTTG+TGG | + | chr3.3:36291861-36291880 | MS.gene019141:CDS | 40.0% |
| ! | TACCTTGATTTTCTTGGTGG+TGG | + | chr3.3:36290872-36290891 | MS.gene019141:intron | 40.0% |
| ! | TGCTTCAAAGAGTATACACC+TGG | + | chr3.3:36293302-36293321 | MS.gene019141:CDS | 40.0% |
| !! | AAGGTTTTCCTTGTTTGGCT+TGG | + | chr3.3:36290488-36290507 | MS.gene019141:CDS | 40.0% |
| !! | TAATAGCCATTTTACTCGCC+TGG | - | chr3.3:36293166-36293185 | None:intergenic | 40.0% |
| !! | TTCTTTGCTTTTGGAAACGG+TGG | + | chr3.3:36293229-36293248 | MS.gene019141:CDS | 40.0% |
| !!! | TTGATTTTCTTGGTGGTGGT+CGG | + | chr3.3:36290876-36290895 | MS.gene019141:intron | 40.0% |
| AATGCATGGATCACCCTTCT+TGG | - | chr3.3:36290544-36290563 | None:intergenic | 45.0% | |
| CAAACTGAGCTAAGTTCACG+AGG | + | chr3.3:36290941-36290960 | MS.gene019141:intron | 45.0% | |
| CGCTTCTACACCATAGTCAT+TGG | + | chr3.3:36291855-36291874 | MS.gene019141:CDS | 45.0% | |
| CTACCATGCTTCTCCAATAG+CGG | + | chr3.3:36291104-36291123 | MS.gene019141:intron | 45.0% | |
| CTAGCATTATGCAAGGATCC+TGG | - | chr3.3:36292896-36292915 | None:intergenic | 45.0% | |
| GACCACCACCAAGAAAATCA+AGG | - | chr3.3:36290877-36290896 | None:intergenic | 45.0% | |
| GATCTGCAGCCACATATATG+AGG | + | chr3.3:36291715-36291734 | MS.gene019141:CDS | 45.0% | |
| GCAGGCATTACATGCAAGTA+AGG | + | chr3.3:36292478-36292497 | MS.gene019141:intron | 45.0% | |
| GCAGGGGAAACTTTATGCAA+AGG | + | chr3.3:36291239-36291258 | MS.gene019141:intron | 45.0% | |
| GCATATGGGACACTATTAGC+AGG | + | chr3.3:36291272-36291291 | MS.gene019141:CDS | 45.0% | |
| GGCGTAGCCAAATCTTTAGA+AGG | + | chr3.3:36291966-36291985 | MS.gene019141:CDS | 45.0% | |
| GTAGTGTTCCAAGCCAAACA+AGG | - | chr3.3:36290499-36290518 | None:intergenic | 45.0% | |
| TCGACAGCTTCCAAACTTGA+AGG | + | chr3.3:36291945-36291964 | MS.gene019141:CDS | 45.0% | |
| TGGCATTTCCAAATTGGTCG+GGG | + | chr3.3:36291907-36291926 | MS.gene019141:CDS | 45.0% | |
| TGGCCAATCCCTTTATAGAG+TGG | - | chr3.3:36290616-36290635 | None:intergenic | 45.0% | |
| ! | GAGTCGTGGCTGAGATTTTA+TGG | - | chr3.3:36293036-36293055 | None:intergenic | 45.0% |
| ! | TTTGGCTACGCCTTCAAGTT+TGG | - | chr3.3:36291958-36291977 | None:intergenic | 45.0% |
| !! | GTTTGGCTTGGAACACTACT+TGG | + | chr3.3:36290500-36290519 | MS.gene019141:CDS | 45.0% |
| !!! | TGATTTTCTTGGTGGTGGTC+GGG | + | chr3.3:36290877-36290896 | MS.gene019141:intron | 45.0% |
| AAAGGAAGTGGTGAGAAGCC+AGG | + | chr3.3:36293145-36293164 | MS.gene019141:CDS | 50.0% | |
| AATCACGCTGACGGTTGTGT+TGG | - | chr3.3:36291463-36291482 | None:intergenic | 50.0% | |
| ACCATAGCTGCTGCAAAAGC+AGG | + | chr3.3:36293101-36293120 | MS.gene019141:CDS | 50.0% | |
| ATCACGCTGACGGTTGTGTT+GGG | - | chr3.3:36291462-36291481 | None:intergenic | 50.0% | |
| CAACCGCTATTGGAGAAGCA+TGG | - | chr3.3:36291110-36291129 | None:intergenic | 50.0% | |
| GAACTCGAAAACCACGACGA+CGG | - | chr3.3:36290662-36290681 | None:intergenic | 50.0% | |
| GAGAAGCCAGGCGAGTAAAA+TGG | + | chr3.3:36293157-36293176 | MS.gene019141:CDS | 50.0% | |
| GGCATTTCCAAATTGGTCGG+GGG | + | chr3.3:36291908-36291927 | MS.gene019141:CDS | 50.0% | |
| TCTCAGCCACGACTCTTCTT+AGG | + | chr3.3:36293041-36293060 | MS.gene019141:CDS | 50.0% | |
| ! | TGCTTTTGCAGCAGCTATGG+TGG | - | chr3.3:36293102-36293121 | None:intergenic | 50.0% |
| !! | GCGTCGACTCTTTATGCTGT+TGG | - | chr3.3:36292952-36292971 | None:intergenic | 50.0% |
| !! | TCCTGCTTTTGCAGCAGCTA+TGG | - | chr3.3:36293105-36293124 | None:intergenic | 50.0% |
| !!! | GATTTTCTTGGTGGTGGTCG+GGG | + | chr3.3:36290878-36290897 | MS.gene019141:intron | 50.0% |
| AGGTCTTCCCCCGACCAATT+TGG | - | chr3.3:36291918-36291937 | None:intergenic | 55.0% | |
| ! | GATTGGCCAGCACGCTAGTT+GGG | + | chr3.3:36290627-36290646 | MS.gene019141:CDS | 55.0% |
| !!! | GTGGTTTTCGAGTTCACCGC+AGG | + | chr3.3:36290667-36290686 | MS.gene019141:CDS | 55.0% |
| GGCTGTCATAACCGTCGTCG+TGG | + | chr3.3:36290648-36290667 | MS.gene019141:CDS | 60.0% | |
| TGACAGCCCAACTAGCGTGC+TGG | - | chr3.3:36290636-36290655 | None:intergenic | 60.0% | |
| !! | GGATTGGCCAGCACGCTAGT+TGG | + | chr3.3:36290626-36290645 | MS.gene019141:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 36290451 | 36293403 | 36290451 | ID=MS.gene019141 |
| chr3.3 | mRNA | 36290451 | 36293403 | 36290451 | ID=MS.gene019141.t1;Parent=MS.gene019141 |
| chr3.3 | exon | 36290451 | 36290688 | 36290451 | ID=MS.gene019141.t1.exon1;Parent=MS.gene019141.t1 |
| chr3.3 | CDS | 36290451 | 36290688 | 36290451 | ID=cds.MS.gene019141.t1;Parent=MS.gene019141.t1 |
| chr3.3 | exon | 36291243 | 36291383 | 36291243 | ID=MS.gene019141.t1.exon2;Parent=MS.gene019141.t1 |
| chr3.3 | CDS | 36291243 | 36291383 | 36291243 | ID=cds.MS.gene019141.t1;Parent=MS.gene019141.t1 |
| chr3.3 | exon | 36291715 | 36291987 | 36291715 | ID=MS.gene019141.t1.exon3;Parent=MS.gene019141.t1 |
| chr3.3 | CDS | 36291715 | 36291987 | 36291715 | ID=cds.MS.gene019141.t1;Parent=MS.gene019141.t1 |
| chr3.3 | exon | 36292068 | 36292192 | 36292068 | ID=MS.gene019141.t1.exon4;Parent=MS.gene019141.t1 |
| chr3.3 | CDS | 36292068 | 36292192 | 36292068 | ID=cds.MS.gene019141.t1;Parent=MS.gene019141.t1 |
| chr3.3 | exon | 36292482 | 36292625 | 36292482 | ID=MS.gene019141.t1.exon5;Parent=MS.gene019141.t1 |
| chr3.3 | CDS | 36292482 | 36292625 | 36292482 | ID=cds.MS.gene019141.t1;Parent=MS.gene019141.t1 |
| chr3.3 | exon | 36292867 | 36293403 | 36292867 | ID=MS.gene019141.t1.exon6;Parent=MS.gene019141.t1 |
| chr3.3 | CDS | 36292867 | 36293403 | 36292867 | ID=cds.MS.gene019141.t1;Parent=MS.gene019141.t1 |
| Gene Sequence |
| Protein sequence |
