Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09658.t1 | XP_003611471.1 | 94.2 | 537 | 15 | 1 | 1 | 537 | 29 | 549 | 8.40E-284 | 985.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09658.t1 | O49696 | 60.8 | 548 | 150 | 11 | 14 | 522 | 28 | 549 | 2.4e-170 | 600.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09658.t1 | G7JZX5 | 94.2 | 537 | 15 | 1 | 1 | 537 | 29 | 549 | 6.0e-284 | 985.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene09658 | 0.803694 | 3.08E-49 | -1.69E-46 |
| MS.gene049396 | MS.gene09658 | 0.816501 | 5.35E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene09658 | 0.804361 | 2.24E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene09658 | 0.82079 | 5.69E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene09658 | 0.827483 | 1.53E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene09658 | 0.804596 | 2.00E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene09658 | 0.807744 | 4.35E-50 | -1.69E-46 |
| MS.gene05335 | MS.gene09658 | 0.818374 | 2.03E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene09658 | 0.800298 | 1.54E-48 | -1.69E-46 |
| MS.gene053889 | MS.gene09658 | 0.819327 | 1.23E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene09658 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene09658 | 0.817925 | 2.56E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene09658 | 0.84197 | 3.44E-58 | -1.69E-46 |
| MS.gene055744 | MS.gene09658 | 0.84668 | 1.87E-59 | -1.69E-46 |
| MS.gene055909 | MS.gene09658 | 0.838175 | 3.36E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene09658 | 0.832321 | 1.01E-55 | -1.69E-46 |
| MS.gene056166 | MS.gene09658 | 0.830027 | 3.70E-55 | -1.69E-46 |
| MS.gene056422 | MS.gene09658 | 0.81402 | 1.91E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene09658 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene057019 | MS.gene09658 | 0.850215 | 1.96E-60 | -1.69E-46 |
| MS.gene057734 | MS.gene09658 | 0.811678 | 6.21E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene09658 | 0.803152 | 3.99E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene09658 | 0.826464 | 2.67E-54 | -1.69E-46 |
| MS.gene058075 | MS.gene09658 | 0.814272 | 1.68E-51 | -1.69E-46 |
| MS.gene058090 | MS.gene09658 | 0.803868 | 2.84E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene09658 | 0.839063 | 1.98E-57 | -1.69E-46 |
| MS.gene058130 | MS.gene09658 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene09658 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene058948 | MS.gene09658 | 0.817511 | 3.17E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene09658 | 0.806139 | 9.51E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene09658 | 0.808252 | 3.39E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene09658 | 0.821942 | 3.09E-53 | -1.69E-46 |
| MS.gene059870 | MS.gene09658 | 0.81892 | 1.52E-52 | -1.69E-46 |
| MS.gene060372 | MS.gene09658 | 0.8657 | 4.88E-65 | -1.69E-46 |
| MS.gene060837 | MS.gene09658 | 0.825312 | 5.02E-54 | -1.69E-46 |
| MS.gene06097 | MS.gene09658 | 0.836688 | 8.08E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058006 | MS.gene09658 | PPI |
| MS.gene21471 | MS.gene09658 | PPI |
| MS.gene60398 | MS.gene09658 | PPI |
| MS.gene059674 | MS.gene09658 | PPI |
| MS.gene60396 | MS.gene09658 | PPI |
| MS.gene09658 | MS.gene21471 | PPI |
| MS.gene09658 | MS.gene46346 | PPI |
| MS.gene019141 | MS.gene09658 | PPI |
| MS.gene058007 | MS.gene09658 | PPI |
| MS.gene015314 | MS.gene09658 | PPI |
| MS.gene011647 | MS.gene09658 | PPI |
| MS.gene60397 | MS.gene09658 | PPI |
| MS.gene011648 | MS.gene09658 | PPI |
| MS.gene46347 | MS.gene09658 | PPI |
| MS.gene011649 | MS.gene09658 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09658.t1 | MTR_5g014310 | 96.276 | 537 | 4 | 1 | 1 | 537 | 29 | 549 | 0.0 | 1056 |
| MS.gene09658.t1 | MTR_4g098570 | 75.465 | 538 | 101 | 6 | 4 | 537 | 24 | 534 | 0.0 | 779 |
| MS.gene09658.t1 | MTR_4g098610 | 72.388 | 536 | 117 | 5 | 4 | 535 | 24 | 532 | 0.0 | 718 |
| MS.gene09658.t1 | MTR_1g115140 | 58.209 | 536 | 201 | 5 | 7 | 537 | 19 | 536 | 0.0 | 617 |
| MS.gene09658.t1 | MTR_1g115175 | 58.845 | 537 | 196 | 7 | 7 | 537 | 15 | 532 | 0.0 | 601 |
| MS.gene09658.t1 | MTR_1g115190 | 57.356 | 537 | 203 | 6 | 7 | 535 | 16 | 534 | 0.0 | 587 |
| MS.gene09658.t1 | MTR_4g051575 | 41.713 | 362 | 183 | 5 | 14 | 367 | 19 | 360 | 1.67e-88 | 280 |
| MS.gene09658.t1 | MTR_1g077660 | 39.178 | 365 | 198 | 4 | 25 | 388 | 42 | 383 | 4.32e-88 | 280 |
| MS.gene09658.t1 | MTR_1g077670 | 39.394 | 363 | 197 | 4 | 25 | 386 | 48 | 388 | 2.88e-87 | 278 |
| MS.gene09658.t1 | MTR_2g087288 | 41.390 | 331 | 171 | 5 | 30 | 358 | 38 | 347 | 1.44e-84 | 270 |
| MS.gene09658.t1 | MTR_7g106260 | 39.722 | 360 | 190 | 5 | 30 | 386 | 43 | 378 | 1.84e-81 | 262 |
| MS.gene09658.t1 | MTR_8g104110 | 32.830 | 530 | 296 | 13 | 15 | 508 | 50 | 555 | 1.54e-78 | 258 |
| MS.gene09658.t1 | MTR_6g084680 | 32.407 | 540 | 288 | 16 | 12 | 508 | 71 | 576 | 3.02e-77 | 254 |
| MS.gene09658.t1 | MTR_8g104130 | 32.171 | 516 | 281 | 10 | 30 | 508 | 60 | 543 | 3.71e-74 | 246 |
| MS.gene09658.t1 | MTR_1g111250 | 33.267 | 505 | 279 | 14 | 28 | 508 | 73 | 543 | 3.18e-73 | 243 |
| MS.gene09658.t1 | MTR_7g094770 | 35.693 | 339 | 183 | 6 | 34 | 364 | 61 | 372 | 2.06e-71 | 235 |
| MS.gene09658.t1 | MTR_2g087285 | 36.667 | 360 | 207 | 5 | 30 | 388 | 38 | 377 | 9.19e-71 | 233 |
| MS.gene09658.t1 | MTR_8g104120 | 30.669 | 538 | 299 | 13 | 15 | 508 | 46 | 553 | 2.78e-67 | 228 |
| MS.gene09658.t1 | MTR_0710s0020 | 58.919 | 185 | 59 | 2 | 7 | 191 | 16 | 183 | 1.52e-60 | 198 |
| MS.gene09658.t1 | MTR_4g051575 | 42.534 | 221 | 123 | 2 | 148 | 367 | 9 | 226 | 2.54e-55 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09658.t1 | AT4G17970 | 60.584 | 548 | 151 | 11 | 14 | 522 | 28 | 549 | 0.0 | 637 |
| MS.gene09658.t1 | AT5G46610 | 59.619 | 525 | 159 | 7 | 25 | 522 | 37 | 535 | 0.0 | 594 |
| MS.gene09658.t1 | AT5G46600 | 57.115 | 506 | 179 | 7 | 25 | 509 | 38 | 526 | 0.0 | 556 |
| MS.gene09658.t1 | AT5G46610 | 55.810 | 525 | 155 | 7 | 25 | 522 | 37 | 511 | 0.0 | 544 |
| MS.gene09658.t1 | AT5G46610 | 58.765 | 405 | 131 | 5 | 145 | 522 | 93 | 488 | 1.54e-156 | 456 |
| MS.gene09658.t1 | AT4G00910 | 37.158 | 366 | 210 | 4 | 25 | 388 | 54 | 401 | 6.74e-87 | 277 |
| MS.gene09658.t1 | AT1G08440 | 41.441 | 333 | 174 | 4 | 30 | 360 | 14 | 327 | 7.32e-84 | 269 |
| MS.gene09658.t1 | AT3G18440 | 32.752 | 516 | 294 | 11 | 25 | 508 | 75 | 569 | 1.57e-78 | 258 |
| MS.gene09658.t1 | AT1G08430 | 37.396 | 361 | 205 | 4 | 30 | 386 | 14 | 357 | 3.36e-76 | 249 |
| MS.gene09658.t1 | AT3G11680 | 37.173 | 382 | 216 | 4 | 7 | 386 | 16 | 375 | 4.51e-76 | 249 |
| MS.gene09658.t1 | AT3G11680 | 37.173 | 382 | 216 | 4 | 7 | 386 | 14 | 373 | 4.86e-76 | 248 |
| MS.gene09658.t1 | AT1G18420 | 31.638 | 531 | 282 | 13 | 26 | 508 | 80 | 577 | 3.86e-73 | 243 |
| MS.gene09658.t1 | AT2G27240 | 38.736 | 364 | 196 | 7 | 30 | 391 | 14 | 352 | 2.59e-72 | 238 |
| MS.gene09658.t1 | AT1G18420 | 31.499 | 527 | 280 | 13 | 30 | 508 | 1 | 494 | 1.38e-71 | 237 |
| MS.gene09658.t1 | AT2G27240 | 36.082 | 388 | 199 | 6 | 30 | 391 | 14 | 378 | 6.40e-69 | 230 |
| MS.gene09658.t1 | AT2G17470 | 31.028 | 506 | 294 | 15 | 30 | 508 | 32 | 509 | 3.27e-66 | 224 |
| MS.gene09658.t1 | AT2G17470 | 31.028 | 506 | 294 | 15 | 30 | 508 | 54 | 531 | 5.79e-66 | 224 |
| MS.gene09658.t1 | AT1G68600 | 30.502 | 518 | 288 | 15 | 28 | 508 | 47 | 529 | 1.67e-62 | 214 |
| MS.gene09658.t1 | AT1G25480 | 30.682 | 528 | 292 | 16 | 23 | 508 | 46 | 541 | 3.51e-61 | 211 |
| MS.gene09658.t1 | AT4G17585 | 63.380 | 71 | 21 | 2 | 14 | 83 | 28 | 94 | 7.35e-20 | 87.0 |
Find 107 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGCTTCTTTGTTGTATT+TGG | 0.117643 | 5.2:-6268039 | MS.gene09658:CDS |
| ATTCTTATAACCTTTGTATA+TGG | 0.174550 | 5.2:+6266208 | None:intergenic |
| GACACTGTTAGCTGGATTAT+TGG | 0.245806 | 5.2:-6267319 | MS.gene09658:CDS |
| AGATCTTCTCCTGACCAATT+TGG | 0.251279 | 5.2:+6266652 | None:intergenic |
| TCATAGTTCTTCTTTATATA+AGG | 0.253399 | 5.2:+6266823 | None:intergenic |
| TGTGGAAACAGTTGCAAAAT+TGG | 0.260709 | 5.2:-6265214 | MS.gene09658:CDS |
| ACTCTTCTGCATTGCTTGAT+TGG | 0.276649 | 5.2:-6265371 | MS.gene09658:CDS |
| CAAAGGTTATAAGAATGTTT+TGG | 0.284044 | 5.2:-6266201 | MS.gene09658:CDS |
| AGATGATCGGAGAGTATTTC+GGG | 0.298853 | 5.2:+6265567 | None:intergenic |
| GCATATTGATGTTTCCAAAT+TGG | 0.300248 | 5.2:-6266666 | MS.gene09658:CDS |
| AGATTGGACAGAGTGCAATT+TGG | 0.311610 | 5.2:-6267998 | MS.gene09658:CDS |
| TTGCATACCCTCTATAGATT+TGG | 0.320793 | 5.2:+6266594 | None:intergenic |
| ACATCAATATGCTCATTATA+AGG | 0.334201 | 5.2:+6266677 | None:intergenic |
| GGTAGACATGGAAAAGGTTC+TGG | 0.342836 | 5.2:-6265420 | MS.gene09658:CDS |
| AGCTTCTTTGTTGTATTTGG+TGG | 0.345036 | 5.2:-6268036 | MS.gene09658:CDS |
| GTTGGGAGCCAAGGCATTCT+AGG | 0.347134 | 5.2:-6266048 | MS.gene09658:CDS |
| AAGATGATCGGAGAGTATTT+CGG | 0.350796 | 5.2:+6265566 | None:intergenic |
| CTGTTTGAGATCAGAAATTC+AGG | 0.351569 | 5.2:-6265939 | MS.gene09658:intron |
| TGCATGGTTGTGTTTGTGTT+TGG | 0.358609 | 5.2:+6265482 | None:intergenic |
| CCAGGCGTTGCATGCAAGTT+GGG | 0.364061 | 5.2:-6266065 | MS.gene09658:intron |
| TTCTTATAACCTTTGTATAT+GGG | 0.365139 | 5.2:+6266209 | None:intergenic |
| GGATTATTGGCATTCATTGT+TGG | 0.386550 | 5.2:-6267306 | MS.gene09658:CDS |
| TCTCAACCTCGTCTCTTCTT+AGG | 0.393203 | 5.2:-6265507 | MS.gene09658:CDS |
| TCTACTGCTTTCAAGCTTGA+AGG | 0.394471 | 5.2:-6266622 | MS.gene09658:CDS |
| CTACCACGGTGTAGCCGAAT+TGG | 0.395373 | 5.2:+6265972 | None:intergenic |
| ATTGAGGAAGTTGAAGAACT+TGG | 0.400564 | 5.2:-6265183 | MS.gene09658:CDS |
| AAAGGGCTTAACAGAGGATT+GGG | 0.400724 | 5.2:-6267342 | MS.gene09658:CDS |
| ATAAAGAAGAACTATGACTA+TGG | 0.401454 | 5.2:-6266817 | MS.gene09658:CDS |
| GATTGGACAGAGTGCAATTT+GGG | 0.401481 | 5.2:-6267997 | MS.gene09658:CDS |
| TCAGATGATTTGATTTCTCC+AGG | 0.416997 | 5.2:+6266236 | None:intergenic |
| GAGCCACTTTACCATGAGAT+TGG | 0.434876 | 5.2:-6268014 | MS.gene09658:CDS |
| GAGCTTTAGCTACTTATATG+AGG | 0.435607 | 5.2:-6266852 | MS.gene09658:CDS |
| AATGCATGGATCACCCTTCT+CGG | 0.437349 | 5.2:+6268083 | None:intergenic |
| GCGACAGTTTCTTATGCTGT+TGG | 0.449688 | 5.2:+6265599 | None:intergenic |
| TTGATGTTTCCAAATTGGTC+AGG | 0.452448 | 5.2:-6266661 | MS.gene09658:CDS |
| CGGAACAATTTGCCTTCTCA+TGG | 0.454690 | 5.2:-6265081 | MS.gene09658:CDS |
| AAAATTGGATCTTGTTATTG+AGG | 0.463462 | 5.2:-6265199 | MS.gene09658:CDS |
| CAAAGGGCTTAACAGAGGAT+TGG | 0.468379 | 5.2:-6267343 | MS.gene09658:CDS |
| GGAGCTGTTCTTCGCCAATT+CGG | 0.468447 | 5.2:-6265986 | MS.gene09658:CDS |
| AACATGGCTCTAACTGATCT+TGG | 0.468885 | 5.2:+6265678 | None:intergenic |
| TTGGAAGTATACTTTCCAAC+AGG | 0.469451 | 5.2:-6267678 | MS.gene09658:intron |
| TCATCTTCATGAAGCTCTGC+AGG | 0.471552 | 5.2:-6265550 | MS.gene09658:CDS |
| TATGCTCATTATAAGGCAAA+TGG | 0.472401 | 5.2:+6266684 | None:intergenic |
| AAGGCAAATGGCACATCCTA+TGG | 0.473271 | 5.2:+6266696 | None:intergenic |
| TTGAGGAAGTTGAAGAACTT+GGG | 0.474676 | 5.2:-6265182 | MS.gene09658:CDS |
| ATCTCTCAAGCTGTTATCAT+TGG | 0.475130 | 5.2:-6267255 | MS.gene09658:CDS |
| GTGATCCATGCATTCAAAGT+TGG | 0.477949 | 5.2:-6268074 | MS.gene09658:CDS |
| AAAGATGCAAAAGCAGCAAA+AGG | 0.479326 | 5.2:+6265240 | None:intergenic |
| TGCTTTAAAGAGTTTAGAGC+TGG | 0.480144 | 5.2:-6265150 | MS.gene09658:CDS |
| TGTTCAAGGATCCATGCATA+AGG | 0.481436 | 5.2:-6265659 | MS.gene09658:CDS |
| GGAGAGTTCCTAGCTTGGCT+TGG | 0.482577 | 5.2:-6268136 | MS.gene09658:CDS |
| ATCAGTTAGAGCCATGTTCA+AGG | 0.486726 | 5.2:-6265673 | MS.gene09658:CDS |
| GTTGTGCTTGAGTTCACTGC+TGG | 0.488607 | 5.2:-6267957 | MS.gene09658:CDS |
| GCCAGGCGTTGCATGCAAGT+TGG | 0.489802 | 5.2:-6266066 | MS.gene09658:intron |
| CAGGGGCAACTTTATGCAAA+GGG | 0.490713 | 5.2:-6267359 | MS.gene09658:CDS |
| TGCATGCAAGTTGGGAGCCA+AGG | 0.493195 | 5.2:-6266057 | MS.gene09658:CDS |
| AGGTCTTGCCAAATCTATAG+AGG | 0.499136 | 5.2:-6266602 | MS.gene09658:CDS |
| GGATTGGGGACACTGTTAGC+TGG | 0.502209 | 5.2:-6267327 | MS.gene09658:CDS |
| GTTTGAGCATGTTGTTTGCA+TGG | 0.505188 | 5.2:+6265466 | None:intergenic |
| GCTTGGCTTGGAAGACTACA+TGG | 0.510395 | 5.2:-6268124 | MS.gene09658:CDS |
| GTTAAGGAGAGTTCCTAGCT+TGG | 0.512476 | 5.2:-6268141 | MS.gene09658:CDS |
| GTCTATTCAATTCCATGAGA+AGG | 0.518933 | 5.2:+6265069 | None:intergenic |
| ACTCACCAGTGTTTCATCAA+TGG | 0.523301 | 5.2:+6266169 | None:intergenic |
| AATGGCACATCCTATGGCTA+TGG | 0.524419 | 5.2:+6266702 | None:intergenic |
| ATGCATAAGGGTTGCAGCAG+AGG | 0.527389 | 5.2:-6265646 | MS.gene09658:CDS |
| TGGCAGCAATATGTAAAAGT+TGG | 0.528132 | 5.2:-6266007 | MS.gene09658:CDS |
| TGGAAGACTACATGGAATGT+TGG | 0.532227 | 5.2:-6268116 | MS.gene09658:CDS |
| TATGGAGAAATTGATAGCCC+TGG | 0.532775 | 5.2:-6266254 | MS.gene09658:CDS |
| ACAAACCAACTTTGAATGCA+TGG | 0.533262 | 5.2:+6268069 | None:intergenic |
| GTTCAAGGATCCATGCATAA+GGG | 0.544118 | 5.2:-6265658 | MS.gene09658:CDS |
| AAACTAGCTGCTGCACAAGT+TGG | 0.544612 | 5.2:-6265447 | MS.gene09658:CDS |
| TGTCCAATCTCATGGTAAAG+TGG | 0.545106 | 5.2:+6268011 | None:intergenic |
| TGACAGTACCTAGAATGCCT+TGG | 0.545491 | 5.2:+6266040 | None:intergenic |
| GTAGTCTTCCAAGCCAAGCT+AGG | 0.551573 | 5.2:+6268128 | None:intergenic |
| CAAGTTGGTCAAGGTAGACA+TGG | 0.553561 | 5.2:-6265432 | MS.gene09658:CDS |
| GCAGGGGCAACTTTATGCAA+AGG | 0.555764 | 5.2:-6267360 | MS.gene09658:intron |
| GGCACATCCTATGGCTATGG+AGG | 0.562648 | 5.2:+6266705 | None:intergenic |
| TTGGGCTGTCATGACTGTTG+TGG | 0.564819 | 5.2:-6267979 | MS.gene09658:CDS |
| TTGCACTCTGTCCAATCTCA+TGG | 0.565734 | 5.2:+6268003 | None:intergenic |
| GGTCAAGGTAGACATGGAAA+AGG | 0.566977 | 5.2:-6265426 | MS.gene09658:CDS |
| CAGAGCTTCATGAAGATGAT+CGG | 0.567394 | 5.2:+6265554 | None:intergenic |
| TTGCAAATGCATCATCTCAT+CGG | 0.574979 | 5.2:-6267278 | MS.gene09658:CDS |
| CAGATGATTTGATTTCTCCA+GGG | 0.585009 | 5.2:+6266237 | None:intergenic |
| CGCATATCCTCCATAGCCAT+AGG | 0.597555 | 5.2:-6266712 | MS.gene09658:CDS |
| AAAGTCCATTGATGAAACAC+TGG | 0.597602 | 5.2:-6266174 | MS.gene09658:intron |
| TCTGCTGCAACCCTTATGCA+TGG | 0.600193 | 5.2:+6265648 | None:intergenic |
| TACACCGTGGTAGCTCTACA+TGG | 0.602151 | 5.2:-6265962 | MS.gene09658:CDS |
| TTGGATATGAAGATCCGAGA+AGG | 0.603501 | 5.2:-6268097 | MS.gene09658:CDS |
| AGATTCATTAATGCAGTCGA+AGG | 0.607766 | 5.2:-6265337 | MS.gene09658:CDS |
| TTATGCAAAGGGCTTAACAG+AGG | 0.619114 | 5.2:-6267348 | MS.gene09658:CDS |
| AGAGTATTTCGGGAGAGCAA+TGG | 0.619871 | 5.2:+6265577 | None:intergenic |
| TCTTCAACACACTGTCGACA+CGG | 0.624154 | 5.2:+6266746 | None:intergenic |
| GCTGCTGCACAAGTTGGTCA+AGG | 0.626016 | 5.2:-6265441 | MS.gene09658:CDS |
| GGTCTTGCCAAATCTATAGA+GGG | 0.633364 | 5.2:-6266601 | MS.gene09658:intron |
| TGGATATGAAGATCCGAGAA+GGG | 0.636881 | 5.2:-6268096 | MS.gene09658:CDS |
| TGGAGAAATCAAATCATCTG+AGG | 0.654343 | 5.2:-6266234 | MS.gene09658:CDS |
| TCTGAGGATCCCATATACAA+AGG | 0.659738 | 5.2:-6266218 | MS.gene09658:CDS |
| TATGCATGGATCCTTGAACA+TGG | 0.660343 | 5.2:+6265662 | None:intergenic |
| CACTAGTCTTGAATTCTCTG+AGG | 0.665482 | 5.2:-6265268 | MS.gene09658:CDS |
| TCGCCAATTCGGCTACACCG+TGG | 0.667964 | 5.2:-6265975 | MS.gene09658:CDS |
| TTCCGCGACACATCAACTCG+AGG | 0.668844 | 5.2:+6265099 | None:intergenic |
| AACCTCGAGTTGATGTGTCG+CGG | 0.672079 | 5.2:-6265101 | MS.gene09658:CDS |
| ACAGCCATGTAGAGCTACCA+CGG | 0.683787 | 5.2:+6265958 | None:intergenic |
| TTGGAGCCTAAGAAGAGACG+AGG | 0.690434 | 5.2:+6265501 | None:intergenic |
| GGTACTGTCACAAATTTCCG+TGG | 0.699505 | 5.2:-6266027 | MS.gene09658:CDS |
| AAGGGCTTAACAGAGGATTG+GGG | 0.729918 | 5.2:-6267341 | MS.gene09658:CDS |
| TGATATTGTTGTGACTTGTG+AGG | 0.758451 | 5.2:-6265124 | MS.gene09658:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAAATTTAGTACGA+GGG | - | chr5.2:6265488-6265507 | MS.gene09658:CDS | 15.0% |
| !! | AATTAAAATTAACCTAGAAA+TGG | + | chr5.2:6267122-6267141 | None:intergenic | 15.0% |
| !! | ACATAAAGAAAATTTAATTG+AGG | + | chr5.2:6265342-6265361 | None:intergenic | 15.0% |
| !! | ATTATAAGATCTTTATTCAA+AGG | + | chr5.2:6267153-6267172 | None:intergenic | 15.0% |
| !! | CAGTTAAATATATTTAGTAA+CGG | - | chr5.2:6266690-6266709 | MS.gene09658:CDS | 15.0% |
| !! | CATGTGTAAAAAATAAAATA+TGG | + | chr5.2:6266877-6266896 | None:intergenic | 15.0% |
| !! | TAATATAAAAATTTAGTACG+AGG | - | chr5.2:6265487-6265506 | MS.gene09658:CDS | 15.0% |
| !! | TAATGAATATATGTTATAAC+AGG | + | chr5.2:6267532-6267551 | None:intergenic | 15.0% |
| !! | TTTCTTTATGTAAAAGTTAT+TGG | - | chr5.2:6265351-6265370 | MS.gene09658:CDS | 15.0% |
| !!! | ATTTTTTTTTTTTTGAAGGA+AGG | + | chr5.2:6265813-6265832 | None:intergenic | 15.0% |
| !! | ATAAAGATCTTATAATGCTT+CGG | - | chr5.2:6267157-6267176 | MS.gene09658:intron | 20.0% |
| !! | ATAGACTATGATATCATATT+AGG | + | chr5.2:6265667-6265686 | None:intergenic | 20.0% |
| !! | ATTCTTATAACCTTTGTATA+TGG | + | chr5.2:6267051-6267070 | None:intergenic | 20.0% |
| !! | TAGACTATGATATCATATTA+GGG | + | chr5.2:6265666-6265685 | None:intergenic | 20.0% |
| !! | TCATAGTTCTTCTTTATATA+AGG | + | chr5.2:6266436-6266455 | None:intergenic | 20.0% |
| !! | TTCTTATAACCTTTGTATAT+GGG | + | chr5.2:6267050-6267069 | None:intergenic | 20.0% |
| !!! | GGACATTTTTTTTTTTTTGA+AGG | + | chr5.2:6265817-6265836 | None:intergenic | 20.0% |
| !!! | TCTCTTTTAAATGTAAAACT+TGG | + | chr5.2:6265388-6265407 | None:intergenic | 20.0% |
| !!! | TGTGTCAATGAATATTTTTA+TGG | - | chr5.2:6266984-6267003 | MS.gene09658:intron | 20.0% |
| !!! | TTTCAAACTTTGTGTTTTTT+TGG | - | chr5.2:6265871-6265890 | MS.gene09658:intron | 20.0% |
| ! | AACTTATAACGTTACATAAG+AGG | + | chr5.2:6265443-6265462 | None:intergenic | 25.0% |
| ! | AATGTTAACAAATAGTCACA+AGG | - | chr5.2:6266292-6266311 | MS.gene09658:intron | 25.0% |
| ! | AATTCTGTTACATTAATCAC+TGG | + | chr5.2:6266210-6266229 | None:intergenic | 25.0% |
| ! | ACATCAATATGCTCATTATA+AGG | + | chr5.2:6266582-6266601 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAACTATGACTA+TGG | - | chr5.2:6266439-6266458 | MS.gene09658:intron | 25.0% |
| ! | ATAATGCTTCGGTATTAAAT+TGG | - | chr5.2:6267168-6267187 | MS.gene09658:intron | 25.0% |
| ! | ATATCATAGTCTATTCATTC+GGG | - | chr5.2:6265673-6265692 | MS.gene09658:CDS | 25.0% |
| ! | GATATCATAGTCTATTCATT+CGG | - | chr5.2:6265672-6265691 | MS.gene09658:CDS | 25.0% |
| ! | TCTTATGTAACGTTATAAGT+TGG | - | chr5.2:6265442-6265461 | MS.gene09658:CDS | 25.0% |
| ! | TGTCTTGATTTAGATTTACA+AGG | + | chr5.2:6266940-6266959 | None:intergenic | 25.0% |
| ! | TTTACAAGGTAAAATTCACA+AGG | + | chr5.2:6266926-6266945 | None:intergenic | 25.0% |
| !! | CAAAGGTTATAAGAATGTTT+TGG | - | chr5.2:6267055-6267074 | MS.gene09658:intron | 25.0% |
| !! | TTTAGCTTCTTTGTTGTATT+TGG | - | chr5.2:6265217-6265236 | MS.gene09658:CDS | 25.0% |
| !!! | AAAATTGGATCTTGTTATTG+AGG | - | chr5.2:6268057-6268076 | MS.gene09658:CDS | 25.0% |
| !!! | TTTTTTTTTTGAAGGAAGGA+AGG | + | chr5.2:6265809-6265828 | None:intergenic | 25.0% |
| AAGTATACTTGTATACCTGT+TGG | + | chr5.2:6265596-6265615 | None:intergenic | 30.0% | |
| ACAGGTATACAAGTATACTT+TGG | - | chr5.2:6265596-6265615 | MS.gene09658:CDS | 30.0% | |
| ATGGTTTGAATAAGTCGAAT+TGG | - | chr5.2:6266131-6266150 | MS.gene09658:intron | 30.0% | |
| GCATATTGATGTTTCCAAAT+TGG | - | chr5.2:6266590-6266609 | MS.gene09658:intron | 30.0% | |
| TATACTTCTTAAGCGACTTT+GGG | + | chr5.2:6265529-6265548 | None:intergenic | 30.0% | |
| TATATGAGATCTCGATCATA+TGG | - | chr5.2:6266078-6266097 | MS.gene09658:intron | 30.0% | |
| TATGCTCATTATAAGGCAAA+TGG | + | chr5.2:6266575-6266594 | None:intergenic | 30.0% | |
| TCTAAATCAAGACATAGTCA+AGG | - | chr5.2:6266946-6266965 | MS.gene09658:intron | 30.0% | |
| TGAAAAGAGTTTATACAGAG+AGG | - | chr5.2:6265415-6265434 | MS.gene09658:CDS | 30.0% | |
| TTAATGTGTGGATAAATTGG+CGG | + | chr5.2:6265703-6265722 | None:intergenic | 30.0% | |
| ! | ATAGCAATTTTACTCAACTG+GGG | + | chr5.2:6267968-6267987 | None:intergenic | 30.0% |
| ! | GATAGCAATTTTACTCAACT+GGG | + | chr5.2:6267969-6267988 | None:intergenic | 30.0% |
| ! | TCTTAATATGCGATTTTCTG+CGG | - | chr5.2:6266367-6266386 | MS.gene09658:intron | 30.0% |
| ! | TGATAGCAATTTTACTCAAC+TGG | + | chr5.2:6267970-6267989 | None:intergenic | 30.0% |
| !! | AAACACAGTTTTATGCTGTT+TGG | - | chr5.2:6265559-6265578 | MS.gene09658:CDS | 30.0% |
| !! | GTATTTGTTTTCTTTTGAGC+CGG | - | chr5.2:6267502-6267521 | MS.gene09658:intron | 30.0% |
| !! | TATTTGTTTTCTTTTGAGCC+GGG | - | chr5.2:6267503-6267522 | MS.gene09658:intron | 30.0% |
| !!! | CGTTATAAGTTGGTTTTGTA+AGG | - | chr5.2:6265452-6265471 | MS.gene09658:CDS | 30.0% |
| AAAGATGCAAAAGCAGCAAA+AGG | + | chr5.2:6268019-6268038 | None:intergenic | 35.0% | |
| AAAGTCCATTGATGAAACAC+TGG | - | chr5.2:6267082-6267101 | MS.gene09658:intron | 35.0% | |
| AAGTTCAAACACATGCAACT+AGG | + | chr5.2:6265838-6265857 | None:intergenic | 35.0% | |
| ACAAACCAACTTTGAATGCA+TGG | + | chr5.2:6265190-6265209 | None:intergenic | 35.0% | |
| ACAGTCTTAAACTTACAAGC+CGG | + | chr5.2:6267394-6267413 | None:intergenic | 35.0% | |
| AGATTCATTAATGCAGTCGA+AGG | - | chr5.2:6267919-6267938 | MS.gene09658:intron | 35.0% | |
| ATACTTCTTAAGCGACTTTG+GGG | + | chr5.2:6265528-6265547 | None:intergenic | 35.0% | |
| ATATGTTATAACAGGAACCC+CGG | + | chr5.2:6267524-6267543 | None:intergenic | 35.0% | |
| ATCTCTCAAGCTGTTATCAT+TGG | - | chr5.2:6266001-6266020 | MS.gene09658:CDS | 35.0% | |
| ATGATCGAGATCTCATATAG+CGG | + | chr5.2:6266077-6266096 | None:intergenic | 35.0% | |
| ATTGAGGAAGTTGAAGAACT+TGG | - | chr5.2:6268073-6268092 | MS.gene09658:CDS | 35.0% | |
| CAAGATTTGATCTCAGAGTT+TGG | + | chr5.2:6267439-6267458 | None:intergenic | 35.0% | |
| GACATGAACACACACTTATT+CGG | + | chr5.2:6265771-6265790 | None:intergenic | 35.0% | |
| GGATTATTGGCATTCATTGT+TGG | - | chr5.2:6265950-6265969 | MS.gene09658:CDS | 35.0% | |
| GGCTTAATGTGTGGATAAAT+TGG | + | chr5.2:6265706-6265725 | None:intergenic | 35.0% | |
| GTATACTTCTTAAGCGACTT+TGG | + | chr5.2:6265530-6265549 | None:intergenic | 35.0% | |
| TAATAGTGCTTAGCGTAAGT+GGG | - | chr5.2:6265726-6265745 | MS.gene09658:intron | 35.0% | |
| TAATGTGTGGATAAATTGGC+GGG | + | chr5.2:6265702-6265721 | None:intergenic | 35.0% | |
| TGGAGAAATCAAATCATCTG+AGG | - | chr5.2:6267022-6267041 | MS.gene09658:intron | 35.0% | |
| TGGCAGCAATATGTAAAAGT+TGG | - | chr5.2:6267249-6267268 | MS.gene09658:CDS | 35.0% | |
| TGTGGAAACAGTTGCAAAAT+TGG | - | chr5.2:6268042-6268061 | MS.gene09658:CDS | 35.0% | |
| TTCAAACCATTTGATGAAGC+CGG | + | chr5.2:6266121-6266140 | None:intergenic | 35.0% | |
| TTGAGGAAGTTGAAGAACTT+GGG | - | chr5.2:6268074-6268093 | MS.gene09658:CDS | 35.0% | |
| TTGATGTTTCCAAATTGGTC+AGG | - | chr5.2:6266595-6266614 | MS.gene09658:intron | 35.0% | |
| TTGCAAATGCATCATCTCAT+CGG | - | chr5.2:6265978-6265997 | MS.gene09658:CDS | 35.0% | |
| TTGCATACCCTCTATAGATT+TGG | + | chr5.2:6266665-6266684 | None:intergenic | 35.0% | |
| ! | AACAAACGTGTGCATGTTTT+TGG | - | chr5.2:6265086-6265105 | MS.gene09658:CDS | 35.0% |
| ! | ACTTTTACATATTGCTGCCA+CGG | + | chr5.2:6267249-6267268 | None:intergenic | 35.0% |
| ! | AGCTTCTTTGTTGTATTTGG+TGG | - | chr5.2:6265220-6265239 | MS.gene09658:CDS | 35.0% |
| ! | CAGATGATTTGATTTCTCCA+GGG | + | chr5.2:6267022-6267041 | None:intergenic | 35.0% |
| ! | CTGTTTGAGATCAGAAATTC+AGG | - | chr5.2:6267317-6267336 | MS.gene09658:CDS | 35.0% |
| ! | GAGCTTTAGCTACTTATATG+AGG | - | chr5.2:6266404-6266423 | MS.gene09658:intron | 35.0% |
| ! | TCAGATGATTTGATTTCTCC+AGG | + | chr5.2:6267023-6267042 | None:intergenic | 35.0% |
| ! | TGATATTGTTGTGACTTGTG+AGG | - | chr5.2:6268132-6268151 | MS.gene09658:CDS | 35.0% |
| ! | TTGGAAGTATACTTTCCAAC+AGG | - | chr5.2:6265578-6265597 | MS.gene09658:CDS | 35.0% |
| !! | AAGATGATCGGAGAGTATTT+CGG | + | chr5.2:6267693-6267712 | None:intergenic | 35.0% |
| !! | ATTTGTTTTCTTTTGAGCCG+GGG | - | chr5.2:6267504-6267523 | MS.gene09658:intron | 35.0% |
| !! | GTATACTTTGGAATCATGTG+TGG | - | chr5.2:6265608-6265627 | MS.gene09658:CDS | 35.0% |
| !! | GTCAGTTTTAACACTCGATA+AGG | + | chr5.2:6267867-6267886 | None:intergenic | 35.0% |
| !! | TGCTTTAAAGAGTTTAGAGC+TGG | - | chr5.2:6268106-6268125 | MS.gene09658:CDS | 35.0% |
| !!! | ATGTTTTTGGTGAGAGGTTA+AGG | - | chr5.2:6265099-6265118 | MS.gene09658:CDS | 35.0% |
| !!! | TTTGTGTTTTTTTGGCTGCA+GGG | - | chr5.2:6265879-6265898 | MS.gene09658:intron | 35.0% |
| !!! | TTTTTTTGAAGGAAGGAAGG+AGG | + | chr5.2:6265806-6265825 | None:intergenic | 35.0% |
| AAAGGGCTTAACAGAGGATT+GGG | - | chr5.2:6265914-6265933 | MS.gene09658:intron | 40.0% | |
| ACTCACCAGTGTTTCATCAA+TGG | + | chr5.2:6267090-6267109 | None:intergenic | 40.0% | |
| ACTCTTCTGCATTGCTTGAT+TGG | - | chr5.2:6267885-6267904 | MS.gene09658:intron | 40.0% | |
| AGATCTTCTCCTGACCAATT+TGG | + | chr5.2:6266607-6266626 | None:intergenic | 40.0% | |
| AGATTGGACAGAGTGCAATT+TGG | - | chr5.2:6265258-6265277 | MS.gene09658:CDS | 40.0% | |
| AGGTCTTGCCAAATCTATAG+AGG | - | chr5.2:6266654-6266673 | MS.gene09658:CDS | 40.0% | |
| ATCAGTTAGAGCCATGTTCA+AGG | - | chr5.2:6267583-6267602 | MS.gene09658:intron | 40.0% | |
| ATCTTGTGTTCTAACACAGC+CGG | - | chr5.2:6267453-6267472 | MS.gene09658:intron | 40.0% | |
| CACTTACGCTAAGCACTATT+AGG | + | chr5.2:6265727-6265746 | None:intergenic | 40.0% | |
| CAGAGCTTCATGAAGATGAT+CGG | + | chr5.2:6267705-6267724 | None:intergenic | 40.0% | |
| CTAATAGTGCTTAGCGTAAG+TGG | - | chr5.2:6265725-6265744 | MS.gene09658:intron | 40.0% | |
| GACACTGTTAGCTGGATTAT+TGG | - | chr5.2:6265937-6265956 | MS.gene09658:intron | 40.0% | |
| GATTGGACAGAGTGCAATTT+GGG | - | chr5.2:6265259-6265278 | MS.gene09658:CDS | 40.0% | |
| GCAAATATTGCCTACGTATC+CGG | + | chr5.2:6267475-6267494 | None:intergenic | 40.0% | |
| GCACTATTAGGCTTAATGTG+TGG | + | chr5.2:6265715-6265734 | None:intergenic | 40.0% | |
| GGTCTTGCCAAATCTATAGA+GGG | - | chr5.2:6266655-6266674 | MS.gene09658:CDS | 40.0% | |
| GGTTTGAATACCTCGTATTC+CGG | - | chr5.2:6266099-6266118 | MS.gene09658:intron | 40.0% | |
| GTGATCCATGCATTCAAAGT+TGG | - | chr5.2:6265182-6265201 | MS.gene09658:CDS | 40.0% | |
| GTTCAAGGATCCATGCATAA+GGG | - | chr5.2:6267598-6267617 | MS.gene09658:intron | 40.0% | |
| TACTTCTTAAGCGACTTTGG+GGG | + | chr5.2:6265527-6265546 | None:intergenic | 40.0% | |
| TATGCATGGATCCTTGAACA+TGG | + | chr5.2:6267597-6267616 | None:intergenic | 40.0% | |
| TCTACTGCTTTCAAGCTTGA+AGG | - | chr5.2:6266634-6266653 | MS.gene09658:CDS | 40.0% | |
| TCTGAGGATCCCATATACAA+AGG | - | chr5.2:6267038-6267057 | MS.gene09658:intron | 40.0% | |
| TGATCGAGATCTCATATAGC+GGG | + | chr5.2:6266076-6266095 | None:intergenic | 40.0% | |
| TGCATGGTTGTGTTTGTGTT+TGG | + | chr5.2:6267777-6267796 | None:intergenic | 40.0% | |
| TGGAAGACTACATGGAATGT+TGG | - | chr5.2:6265140-6265159 | MS.gene09658:CDS | 40.0% | |
| TGGATATGAAGATCCGAGAA+GGG | - | chr5.2:6265160-6265179 | MS.gene09658:CDS | 40.0% | |
| TGTCCAATCTCATGGTAAAG+TGG | + | chr5.2:6265248-6265267 | None:intergenic | 40.0% | |
| TGTGGTTTATTAGAAACGCG+AGG | - | chr5.2:6265626-6265645 | MS.gene09658:CDS | 40.0% | |
| TGTTCAAGGATCCATGCATA+AGG | - | chr5.2:6267597-6267616 | MS.gene09658:intron | 40.0% | |
| TTAGCGTAAGTGGGTGTATT+GGG | - | chr5.2:6265735-6265754 | MS.gene09658:intron | 40.0% | |
| TTAGTCCCTGAAATTGTGAC+CGG | - | chr5.2:6267372-6267391 | MS.gene09658:intron | 40.0% | |
| TTATGCAAAGGGCTTAACAG+AGG | - | chr5.2:6265908-6265927 | MS.gene09658:intron | 40.0% | |
| TTGGATATGAAGATCCGAGA+AGG | - | chr5.2:6265159-6265178 | MS.gene09658:CDS | 40.0% | |
| ! | GTTTGAGCATGTTGTTTGCA+TGG | + | chr5.2:6267793-6267812 | None:intergenic | 40.0% |
| ! | TATGGAGAAATTGATAGCCC+TGG | - | chr5.2:6267002-6267021 | MS.gene09658:intron | 40.0% |
| ! | TGCTTTTGCATCTTTGCTTG+TGG | - | chr5.2:6268024-6268043 | MS.gene09658:CDS | 40.0% |
| !! | AACATGGCTCTAACTGATCT+TGG | + | chr5.2:6267581-6267600 | None:intergenic | 40.0% |
| !! | AGATGATCGGAGAGTATTTC+GGG | + | chr5.2:6267692-6267711 | None:intergenic | 40.0% |
| !! | AGTCTCTATGTGCCATTTCT+AGG | - | chr5.2:6267107-6267126 | MS.gene09658:intron | 40.0% |
| !! | CACTAGTCTTGAATTCTCTG+AGG | - | chr5.2:6267988-6268007 | MS.gene09658:CDS | 40.0% |
| !! | TTCTGCGGATTTGTTATTGC+AGG | - | chr5.2:6266382-6266401 | MS.gene09658:intron | 40.0% |
| !!! | CTTTGTGTTTTTTTGGCTGC+AGG | - | chr5.2:6265878-6265897 | MS.gene09658:intron | 40.0% |
| !!! | TTGTGTTTTTTTGGCTGCAG+GGG | - | chr5.2:6265880-6265899 | MS.gene09658:intron | 40.0% |
| AAACTAGCTGCTGCACAAGT+TGG | - | chr5.2:6267809-6267828 | MS.gene09658:intron | 45.0% | |
| AAGGCAAATGGCACATCCTA+TGG | + | chr5.2:6266563-6266582 | None:intergenic | 45.0% | |
| AAGGGCTTAACAGAGGATTG+GGG | - | chr5.2:6265915-6265934 | MS.gene09658:intron | 45.0% | |
| AATGCATGGATCACCCTTCT+CGG | + | chr5.2:6265176-6265195 | None:intergenic | 45.0% | |
| AATGGCACATCCTATGGCTA+TGG | + | chr5.2:6266557-6266576 | None:intergenic | 45.0% | |
| ACAAGCCGGTCACAATTTCA+GGG | + | chr5.2:6267380-6267399 | None:intergenic | 45.0% | |
| CAAAGGGCTTAACAGAGGAT+TGG | - | chr5.2:6265913-6265932 | MS.gene09658:intron | 45.0% | |
| CAGGGGCAACTTTATGCAAA+GGG | - | chr5.2:6265897-6265916 | MS.gene09658:intron | 45.0% | |
| CGGAACAATTTGCCTTCTCA+TGG | - | chr5.2:6268175-6268194 | MS.gene09658:CDS | 45.0% | |
| CGTATTCCGGCTTCATCAAA+TGG | - | chr5.2:6266112-6266131 | MS.gene09658:intron | 45.0% | |
| CTTAGCGTAAGTGGGTGTAT+TGG | - | chr5.2:6265734-6265753 | MS.gene09658:intron | 45.0% | |
| GATCGAGATCTCATATAGCG+GGG | + | chr5.2:6266075-6266094 | None:intergenic | 45.0% | |
| GCGACAGTTTCTTATGCTGT+TGG | + | chr5.2:6267660-6267679 | None:intergenic | 45.0% | |
| GCTTCGGTATTAAATTGGCC+AGG | - | chr5.2:6267173-6267192 | MS.gene09658:intron | 45.0% | |
| GGTACTGTCACAAATTTCCG+TGG | - | chr5.2:6267229-6267248 | MS.gene09658:intron | 45.0% | |
| GGTAGACATGGAAAAGGTTC+TGG | - | chr5.2:6267836-6267855 | MS.gene09658:intron | 45.0% | |
| GGTCAAGGTAGACATGGAAA+AGG | - | chr5.2:6267830-6267849 | MS.gene09658:intron | 45.0% | |
| GTCAGACAACGATACAACAC+TGG | - | chr5.2:6266802-6266821 | MS.gene09658:CDS | 45.0% | |
| GTTAAGGAGAGTTCCTAGCT+TGG | - | chr5.2:6265115-6265134 | MS.gene09658:CDS | 45.0% | |
| TACAAGCCGGTCACAATTTC+AGG | + | chr5.2:6267381-6267400 | None:intergenic | 45.0% | |
| TCATCTTCATGAAGCTCTGC+AGG | - | chr5.2:6267706-6267725 | MS.gene09658:intron | 45.0% | |
| TCTCAACCTCGTCTCTTCTT+AGG | - | chr5.2:6267749-6267768 | MS.gene09658:intron | 45.0% | |
| TCTTCAACACACTGTCGACA+CGG | + | chr5.2:6266513-6266532 | None:intergenic | 45.0% | |
| TGACAGTACCTAGAATGCCT+TGG | + | chr5.2:6267219-6267238 | None:intergenic | 45.0% | |
| TTGCACTCTGTCCAATCTCA+TGG | + | chr5.2:6265256-6265275 | None:intergenic | 45.0% | |
| TTTGATGAAGCCGGAATACG+AGG | + | chr5.2:6266112-6266131 | None:intergenic | 45.0% | |
| ! | AGAGTATTTCGGGAGAGCAA+TGG | + | chr5.2:6267682-6267701 | None:intergenic | 45.0% |
| ! | GAGCCACTTTACCATGAGAT+TGG | - | chr5.2:6265242-6265261 | MS.gene09658:CDS | 45.0% |
| ! | GGCGCTGCAGTTTTTCTTAT+AGG | - | chr5.2:6266022-6266041 | MS.gene09658:CDS | 45.0% |
| !! | CAAGTTGGTCAAGGTAGACA+TGG | - | chr5.2:6267824-6267843 | MS.gene09658:intron | 45.0% |
| !!! | GTGTGCATGTTTTTGGTGAG+AGG | - | chr5.2:6265093-6265112 | MS.gene09658:CDS | 45.0% |
| ACAGCCATGTAGAGCTACCA+CGG | + | chr5.2:6267301-6267320 | None:intergenic | 50.0% | |
| ACGCCTTCAACCTGAAGTGT+CGG | + | chr5.2:6266753-6266772 | None:intergenic | 50.0% | |
| AGGAAGGAGGACATGCAACT+AGG | + | chr5.2:6265793-6265812 | None:intergenic | 50.0% | |
| ATGCATAAGGGTTGCAGCAG+AGG | - | chr5.2:6267610-6267629 | MS.gene09658:intron | 50.0% | |
| CACTGGTGTCTGTGCTTCAT+AGG | - | chr5.2:6266819-6266838 | MS.gene09658:CDS | 50.0% | |
| CGCATATCCTCCATAGCCAT+AGG | - | chr5.2:6266544-6266563 | MS.gene09658:intron | 50.0% | |
| GCAGGGGCAACTTTATGCAA+AGG | - | chr5.2:6265896-6265915 | MS.gene09658:intron | 50.0% | |
| GGAGCTGTTCTTCGCCAATT+CGG | - | chr5.2:6267270-6267289 | MS.gene09658:CDS | 50.0% | |
| GTAGTCTTCCAAGCCAAGCT+AGG | + | chr5.2:6265131-6265150 | None:intergenic | 50.0% | |
| GTTGTGCTTGAGTTCACTGC+TGG | - | chr5.2:6265299-6265318 | MS.gene09658:CDS | 50.0% | |
| TCTAACACAGCCGGATACGT+AGG | - | chr5.2:6267462-6267481 | MS.gene09658:intron | 50.0% | |
| TCTGCTGCAACCCTTATGCA+TGG | + | chr5.2:6267611-6267630 | None:intergenic | 50.0% | |
| TTGGAGCCTAAGAAGAGACG+AGG | + | chr5.2:6267758-6267777 | None:intergenic | 50.0% | |
| TTGGGCTGTCATGACTGTTG+TGG | - | chr5.2:6265277-6265296 | MS.gene09658:CDS | 50.0% | |
| ! | TACACCGTGGTAGCTCTACA+TGG | - | chr5.2:6267294-6267313 | MS.gene09658:CDS | 50.0% |
| ! | TCTCATATAGCGGGGAATCG+AGG | + | chr5.2:6266067-6266086 | None:intergenic | 50.0% |
| ! | TTGAAGGCGTGTATGGCATC+TGG | - | chr5.2:6266763-6266782 | MS.gene09658:CDS | 50.0% |
| !! | AACCTCGAGTTGATGTGTCG+CGG | - | chr5.2:6268155-6268174 | MS.gene09658:CDS | 50.0% |
| !! | CTTCAGGTTGAAGGCGTGTA+TGG | - | chr5.2:6266756-6266775 | MS.gene09658:CDS | 50.0% |
| !! | GCTTGGCTTGGAAGACTACA+TGG | - | chr5.2:6265132-6265151 | MS.gene09658:CDS | 50.0% |
| CTACCACGGTGTAGCCGAAT+TGG | + | chr5.2:6267287-6267306 | None:intergenic | 55.0% | |
| CTATGTAGCCCCGACACTTC+AGG | - | chr5.2:6266740-6266759 | MS.gene09658:CDS | 55.0% | |
| GGAGAGTTCCTAGCTTGGCT+TGG | - | chr5.2:6265120-6265139 | MS.gene09658:CDS | 55.0% | |
| GGATTGGGGACACTGTTAGC+TGG | - | chr5.2:6265929-6265948 | MS.gene09658:intron | 55.0% | |
| GGCACATCCTATGGCTATGG+AGG | + | chr5.2:6266554-6266573 | None:intergenic | 55.0% | |
| TTCCGCGACACATCAACTCG+AGG | + | chr5.2:6268160-6268179 | None:intergenic | 55.0% | |
| ! | CCAGGCGTTGCATGCAAGTT+GGG | - | chr5.2:6267191-6267210 | MS.gene09658:intron | 55.0% |
| ! | CGCCTTCAACCTGAAGTGTC+GGG | + | chr5.2:6266752-6266771 | None:intergenic | 55.0% |
| ! | GTTGGGAGCCAAGGCATTCT+AGG | - | chr5.2:6267208-6267227 | MS.gene09658:intron | 55.0% |
| ! | TGCATGCAAGTTGGGAGCCA+AGG | - | chr5.2:6267199-6267218 | MS.gene09658:intron | 55.0% |
| !! | GCCTTCAACCTGAAGTGTCG+GGG | + | chr5.2:6266751-6266770 | None:intergenic | 55.0% |
| !! | GCTGCTGCACAAGTTGGTCA+AGG | - | chr5.2:6267815-6267834 | MS.gene09658:intron | 55.0% |
| CCCAACTTGCATGCAACGCC+TGG | + | chr5.2:6267194-6267213 | None:intergenic | 60.0% | |
| GACTGTCCCCACTCTGCAGT+CGG | - | chr5.2:6267408-6267427 | MS.gene09658:intron | 60.0% | |
| GCCAATCCGACTGCAGAGTG+GGG | + | chr5.2:6267417-6267436 | None:intergenic | 60.0% | |
| GGCCAATCCGACTGCAGAGT+GGG | + | chr5.2:6267418-6267437 | None:intergenic | 60.0% | |
| GGCGTGTATGGCATCTGGCA+TGG | - | chr5.2:6266768-6266787 | MS.gene09658:CDS | 60.0% | |
| TCCCCACTCTGCAGTCGGAT+TGG | - | chr5.2:6267413-6267432 | MS.gene09658:intron | 60.0% | |
| TCGCCAATTCGGCTACACCG+TGG | - | chr5.2:6267281-6267300 | MS.gene09658:CDS | 60.0% | |
| TGGCCAATCCGACTGCAGAG+TGG | + | chr5.2:6267419-6267438 | None:intergenic | 60.0% | |
| ! | GCCAGGCGTTGCATGCAAGT+TGG | - | chr5.2:6267190-6267209 | MS.gene09658:intron | 60.0% |
| !! | GCCCCGACACTTCAGGTTGA+AGG | - | chr5.2:6266747-6266766 | MS.gene09658:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 6265071 | 6268207 | 6265071 | ID=MS.gene09658 |
| chr5.2 | mRNA | 6265071 | 6268207 | 6265071 | ID=MS.gene09658.t1;Parent=MS.gene09658 |
| chr5.2 | exon | 6267954 | 6268207 | 6267954 | ID=MS.gene09658.t1.exon1;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6267954 | 6268207 | 6267954 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| chr5.2 | exon | 6267679 | 6267722 | 6267679 | ID=MS.gene09658.t1.exon2;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6267679 | 6267722 | 6267679 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| chr5.2 | exon | 6267235 | 6267378 | 6267235 | ID=MS.gene09658.t1.exon3;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6267235 | 6267378 | 6267235 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| chr5.2 | exon | 6266602 | 6266874 | 6266602 | ID=MS.gene09658.t1.exon4;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6266602 | 6266874 | 6266602 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| chr5.2 | exon | 6266175 | 6266296 | 6266175 | ID=MS.gene09658.t1.exon5;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6266175 | 6266296 | 6266175 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| chr5.2 | exon | 6265940 | 6266083 | 6265940 | ID=MS.gene09658.t1.exon6;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6265940 | 6266083 | 6265940 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| chr5.2 | exon | 6265071 | 6265703 | 6265071 | ID=MS.gene09658.t1.exon7;Parent=MS.gene09658.t1 |
| chr5.2 | CDS | 6265071 | 6265703 | 6265071 | ID=cds.MS.gene09658.t1;Parent=MS.gene09658.t1 |
| Gene Sequence |
| Protein sequence |
