AlfalfaGEDB | MS.gene46346

M. sativa cultivar XinJiangDaYe / MS.gene46346

KEGG: -
GO: GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0046942 GO:0051179 GO:0051234 GO:0071702
PFAM: PF11744.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46346.t1	XP_003608627.1	94.4	534	30	0	1	534	1	534	1.40E-283	984.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46346.t1	O49696	62.6	551	143	8	1	506	1	533	5.8e-177	622.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46346.t1	G7JGH1	94.4	534	30	0	1	534	1	534	1.0e-283	984.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene46346	0.831155	1.96E-55	-1.69E-46
MS.gene049369	MS.gene46346	0.826251	3.01E-54	-1.69E-46
MS.gene049427	MS.gene46346	0.81283	3.48E-51	-1.69E-46
MS.gene049609	MS.gene46346	0.81829	2.12E-52	-1.69E-46
MS.gene049805	MS.gene46346	0.822828	1.92E-53	-1.69E-46
MS.gene050400	MS.gene46346	0.815697	8.09E-52	-1.69E-46
MS.gene050593	MS.gene46346	0.831647	1.48E-55	-1.69E-46
MS.gene050670	MS.gene46346	0.868996	4.31E-66	-1.69E-46
MS.gene050747	MS.gene46346	0.826082	3.30E-54	-1.69E-46
MS.gene05081	MS.gene46346	0.803869	2.84E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011647	MS.gene46346	PPI
MS.gene011648	MS.gene46346	PPI
MS.gene011649	MS.gene46346	PPI
MS.gene015314	MS.gene46346	PPI
MS.gene019141	MS.gene46346	PPI
MS.gene058006	MS.gene46346	PPI
MS.gene058007	MS.gene46346	PPI
MS.gene059674	MS.gene46346	PPI
MS.gene09658	MS.gene46346	PPI
MS.gene21471	MS.gene46346	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46346.t1	MTR_4g098570	97.566	534	13	0	1	534	1	534	0.0	1079
MS.gene46346.t1	MTR_4g098610	88.910	532	59	0	1	532	1	532	0.0	912
MS.gene46346.t1	MTR_5g014310	74.503	553	118	7	1	534	1	549	0.0	801
MS.gene46346.t1	MTR_1g115140	57.435	538	215	4	9	534	1	536	0.0	622
MS.gene46346.t1	MTR_1g115175	58.912	533	200	6	16	534	5	532	0.0	615
MS.gene46346.t1	MTR_1g115190	58.473	537	205	5	11	532	1	534	0.0	597
MS.gene46346.t1	MTR_1g077670	34.845	485	253	8	25	504	23	449	2.67e-96	301
MS.gene46346.t1	MTR_4g051575	44.807	337	179	4	36	370	29	360	2.37e-92	290
MS.gene46346.t1	MTR_1g077660	40.000	360	209	3	41	399	38	391	4.47e-92	290
MS.gene46346.t1	MTR_7g106260	43.314	344	185	3	49	389	42	378	1.31e-86	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46346.t1	AT4G17970	62.795	551	142	8	1	506	1	533	0.0	664
MS.gene46346.t1	AT5G46610	58.802	551	179	9	1	519	1	535	0.0	613
MS.gene46346.t1	AT5G46600	57.383	535	193	7	9	516	10	536	0.0	601
MS.gene46346.t1	AT5G46610	55.172	551	175	10	1	519	1	511	0.0	558
MS.gene46346.t1	AT5G46610	52.087	551	169	10	1	519	1	488	2.22e-178	511
MS.gene46346.t1	AT4G00910	34.818	494	265	8	29	519	42	481	6.16e-96	300
MS.gene46346.t1	AT1G08440	43.218	317	176	2	49	363	13	327	3.21e-88	281
MS.gene46346.t1	AT3G18440	33.204	515	303	9	43	518	73	585	4.64e-83	270
MS.gene46346.t1	AT1G08430	38.551	345	208	2	49	389	13	357	6.86e-80	259
MS.gene46346.t1	AT1G18420	34.000	500	288	12	46	505	80	577	3.19e-79	259

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Find 130 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCACAGATGAAACAT+TGG	0.576415	8.4:-24392617	MS.gene46346:intron
AAAGAAGCAAAAGCAGCAAA+AGG	0.440203	8.4:+24391283	None:intergenic
AAAGGAAGAAGAACAATTAC+CGG	0.462474	8.4:-24391374	MS.gene46346:CDS
AAAGGATCCCTTGTTTGGTT+TGG	0.357623	8.4:-24393981	MS.gene46346:CDS
AAAGGGCTGAATAGAGGATT+GGG	0.415501	8.4:-24393566	MS.gene46346:CDS
AACAGGACTCGAACAGATTG+TGG	0.571380	8.4:+24391703	None:intergenic
AAGACAAATGGCACAGCCAA+TGG	0.541186	8.4:+24392922	None:intergenic
AAGACTCATGAAAAGACAAA+TGG	0.520278	8.4:+24392910	None:intergenic
AAGGGCTGAATAGAGGATTG+GGG	0.679447	8.4:-24393565	MS.gene46346:CDS
AATCACTCTACTCCATGAGA+AGG	0.644576	8.4:+24391112	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCCACAGATGAAACAT+TGG	-	chr8.4:24392587-24392606	MS.gene46346:intron	30.0%
AAAGGAAGAAGAACAATTAC+CGG	-	chr8.4:24393830-24393849	MS.gene46346:CDS	30.0%
AAGACTCATGAAAAGACAAA+TGG	+	chr8.4:24392297-24392316	None:intergenic	30.0%
AATTCCAAAAGCAAATTCAC+GGG	+	chr8.4:24393190-24393209	None:intergenic	30.0%
ACTATTTGAACTAGTCAAAG+GGG	+	chr8.4:24393137-24393156	None:intergenic	30.0%
AGTGTGAGCTATATTATACT+TGG	+	chr8.4:24392651-24392670	None:intergenic	30.0%
ATAAACCAACTTTGAATGCA+TGG	+	chr8.4:24391293-24391312	None:intergenic	30.0%
ATGATTCCTAAAGTTCATGA+CGG	-	chr8.4:24391114-24391133	MS.gene46346:CDS	30.0%
ATGTTATGCTACCTGAATTT+CGG	+	chr8.4:24393006-24393025	None:intergenic	30.0%
CAATTCCAAAAGCAAATTCA+CGG	+	chr8.4:24393191-24393210	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	24391114	24394112	24391114	ID=MS.gene46346
chr8.4	mRNA	24391114	24394112	24391114	ID=MS.gene46346.t1;Parent=MS.gene46346
chr8.4	exon	24393803	24394112	24393803	ID=MS.gene46346.t1.exon1;Parent=MS.gene46346.t1
chr8.4	CDS	24393803	24394112	24393803	ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1
chr8.4	exon	24393462	24393602	24393462	ID=MS.gene46346.t1.exon2;Parent=MS.gene46346.t1
chr8.4	CDS	24393462	24393602	24393462	ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1
chr8.4	exon	24392828	24393100	24392828	ID=MS.gene46346.t1.exon3;Parent=MS.gene46346.t1
chr8.4	CDS	24392828	24393100	24392828	ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1
chr8.4	exon	24392618	24392739	24392618	ID=MS.gene46346.t1.exon4;Parent=MS.gene46346.t1
chr8.4	CDS	24392618	24392739	24392618	ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1
chr8.4	exon	24392213	24392356	24392213	ID=MS.gene46346.t1.exon5;Parent=MS.gene46346.t1
chr8.4	CDS	24392213	24392356	24392213	ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1
chr8.4	exon	24391114	24391728	24391114	ID=MS.gene46346.t1.exon6;Parent=MS.gene46346.t1
chr8.4	CDS	24391114	24391728	24391114	ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1

Gene Sequence

>MS.gene46346

ATGATTCCTAAAGTTCATGACGGCCTTGAAATGGCTATGGCTAGGAATGAGAGTGGCGAAAACCTTGAGAAATGGAAGAAACGTATGCATATTTTTGGTGAGAGGCTTAAAAGGATCCCTTGTTTGGTTTGGAAGACTACTTGGAAGGTGGGATGTGATGATCCAAGAAGGGTGATCCATGCATTCAAAGTTGGTTTATCTCTTACTCTTGTATCATTGCTTTATATATTGGAGCCACTCTTTAAAGGTATTGGCCAAAATGCTATTTGGGCTGTCATGACTGTCGTCGTGGTTTTCGAGTTCACTGCAGGTATCAGATCCTATCTAAACTCAAATAGTATTGTTTTGTACTTTTTCATCTATGATATTGGCGAAAAAAATACAAATAAATGCGACCGGTACGGCAGCAATTGTGGATGAATACTGCAAGTTAAAACCATGATAGAAACAATATAGTAACATAGACACATAGTCTATTGATGACTTTAATTTGTAATTTTTTTATGGCAGGGGCAACTTTATGCAAAGGGCTGAATAGAGGATTGGGGACACTATTAGCAGGATTATTGGCATTTCTTCTTGATTATGTTGCAAATGCTTCTGGTCAGATACTTCAAGCTGTTTTCATTGCAGTTGCAGTTTTTGTAATAGGTATATATTTGATAACCAAAATGGTTCTACCAAAGTTAATGCCATGAAAATTTCCCTTTGTTATAAATTGCTCAAATATTACTCATATATGTATAGTGTTATTATTTGAACATCACAATTCTAACACCGTCGATGTGATTGAAAGAAAGAAAACAAATGCATAAAACTCGAAATCTTATGTTTATATAGTTTCCGACAATATTTGTTGTCAAAATATACTTTCTATTGTTTAATTTGTCATCACTCAAACTGTATCCTTCTTTGCACTATCTTGTAGCTAGTCTGGAGGCCTCAATTGTAACCAATTCGAAAACTTATCGAAATTATTTGTGGTGTCCTGTTAATTTGTTGTGTATGGCAGGATCTACGGCCACTTATATGAGGTTCGTTCCTTATATAAAGAAGAATTATGATTATGGTGTGGTTATATTCCTCTTAACCTTCAACTTGTTAACTGTTTCAAGTTACCGGGTTGATCATGTCTTGAAGATGGCACATGACCGCTTCTTCACCATAGCCATTGGCTGTGCCATTTGTCTTTTCATGAGTCTTTTAGTATTTCCAAATTGGTCAGGGGAAGACCTTCATCATTCCACAGCTTTCAAACTTGAAGGCCTAGCCAAATCTATAGAAGGTATGCCGAATTCATAACACATACATAGTATCAAAGGTTTTATTACTTTGTATATTAGCAACTTATTGTAAGGTGTAAAATATTGCAGCTTGTGTCAATGAATATTTTTATGGAAAAATTGAAGTTTCTGGTGATATAAAATCATCTGAAGGTCCAATATACAAAGGTTATAAGGCTGTTTTGGATTCAAAATCCACAGATGAAACATTGGTAAGCTACCAATCTTGTTTTGATCCATTCAAAATCATGCCAAGTATAATATAGCTCACACTAAGAGCTGGTCTTCATGAGAAATTCTTGTATAAATGTCAGATACCACAAATTATGCGTACTAAGTCAAACAAAACTAAATGATTCATAAGTCTTTTGTGCCTGATAAATATTTATTTATTCAAAATGATCATATATCAGTTGTTAATTAGCTTAAAATAATATCTTGATCTTCAAATGGTTGTGTTTTCAATTGTGTAGGCATTGCATGCAAGTTGGGAGCCAAGGCATTCTAGGTACTGTCACAAATTTCCATCGCAACAGTATGTAAAAGTTGGAAATGTTCTTCGCCAATTTGGGTATACAGTGGTAGCCCTACATGGCTGTTTGAGAACCGAAATTCAGGTAGCATAACATTTGAGTTCTTACATAGTTTTAACCATTTTTGTGAATCTGTCTGTGATCACAGTTTAGCATCTCATTTGATAAATGACAGTGATACCTTTATATTCATTGATGGAATAACCCCTTTGACTAGTTCAAATAGTAGTTATATTTATAAGTGGGACAATCGCCACCCCGTGAATTTGCTTTTGGAATTGAGTGATACTAGAATCCAAATTTTAAGACGTATCAAATTATGTTGTTGGGAAACCTGTCATCGAGCCACTCAAAGATAAGTCTAAATTTCACTCTCCAAATAACTCCCGCGTAAAGTGGGGGCAACCTTCACCCTACGATTTAGCAAATTCTAAGATACTTTTAACTGTAGTTGTAGAAATATGAAAAAGGATGCATCATTCAATTTGTAAGAAAAGAGAATTCTTCTCTACTGCTGTAGCTTTTCTAGTATTTTTCTCCTTTTAATTCAATTTATTATCCTTTTCAGACACCACAATCTGTTCGAGTCCTGTTTAAGGACCCTTGCATAAGGCTAGCAGCAGAGGTATCAAAAGCACTAATAGAACTAGCCAACAGCATAAGAAGTCGGCGCCATTGCTCACCAGAAATACTCTCTGATCATCTACATGATGCATTGAAAGACCTCAACGCAGCCATAAAATCTCAACCACGACTCTTCTTAGGCTCCAATGACATCCAAGCAAACAACATGCTCGCCACCATAGCCGCCTCTCATGGAAAGAGCTCACTCTCAAGCGTTAAAACCGATTCTTCAGCTTTGTTAAATTGGAAAACCAAAAGTGTATCAGCTGAACAGACAAAGGAAGAAGAACAATTACCGGTACGTAAGGTGTTGAGAAAGCAGATGAGTAAAATTGCTATCACTAGTCTTGAGTTTTCTGAAGCATTGCCTTTTGCTGCTTTTGCTTCTTTGCTTGTGGAAACGGTGGCAAAACTGGATTTGATAATTGACGAAGTTGAAGAACTTGGGAGGTTGGCGTGTTTCAAAGAGTATACACCTGGTGATGAGTTTTCTATTAGTTCTGAGAAACCAAGAGTTGATGTTTTGGAGAACCATTTACCTTCTCATGGAGTAGAGTGA

Protein sequence

>MS.gene46346.t1

MIPKVHDGLEMAMARNESGENLEKWKKRMHIFGERLKRIPCLVWKTTWKVGCDDPRRVIHAFKVGLSLTLVSLLYILEPLFKGIGQNAIWAVMTVVVVFEFTAGATLCKGLNRGLGTLLAGLLAFLLDYVANASGQILQAVFIAVAVFVIGSTATYMRFVPYIKKNYDYGVVIFLLTFNLLTVSSYRVDHVLKMAHDRFFTIAIGCAICLFMSLLVFPNWSGEDLHHSTAFKLEGLAKSIEACVNEYFYGKIEVSGDIKSSEGPIYKGYKAVLDSKSTDETLALHASWEPRHSRYCHKFPSQQYVKVGNVLRQFGYTVVALHGCLRTEIQTPQSVRVLFKDPCIRLAAEVSKALIELANSIRSRRHCSPEILSDHLHDALKDLNAAIKSQPRLFLGSNDIQANNMLATIAASHGKSSLSSVKTDSSALLNWKTKSVSAEQTKEEEQLPVRKVLRKQMSKIAITSLEFSEALPFAAFASLLVETVAKLDLIIDEVEELGRLACFKEYTPGDEFSISSEKPRVDVLENHLPSHGVE