Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46346.t1 | XP_003608627.1 | 94.4 | 534 | 30 | 0 | 1 | 534 | 1 | 534 | 1.40E-283 | 984.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46346.t1 | O49696 | 62.6 | 551 | 143 | 8 | 1 | 506 | 1 | 533 | 5.8e-177 | 622.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46346.t1 | G7JGH1 | 94.4 | 534 | 30 | 0 | 1 | 534 | 1 | 534 | 1.0e-283 | 984.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene46346 | 0.831155 | 1.96E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene46346 | 0.826251 | 3.01E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene46346 | 0.81283 | 3.48E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene46346 | 0.81829 | 2.12E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene46346 | 0.822828 | 1.92E-53 | -1.69E-46 |
| MS.gene050400 | MS.gene46346 | 0.815697 | 8.09E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene46346 | 0.831647 | 1.48E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene46346 | 0.868996 | 4.31E-66 | -1.69E-46 |
| MS.gene050747 | MS.gene46346 | 0.826082 | 3.30E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene46346 | 0.806057 | 9.90E-50 | -1.69E-46 |
| MS.gene05081 | MS.gene46346 | 0.803869 | 2.84E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene46346 | 0.819209 | 1.31E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene46346 | 0.8429 | 1.95E-58 | -1.69E-46 |
| MS.gene051360 | MS.gene46346 | 0.825416 | 4.74E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene46346 | 0.843453 | 1.39E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene46346 | 0.861297 | 1.13E-63 | -1.69E-46 |
| MS.gene051666 | MS.gene46346 | 0.821544 | 3.82E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene46346 | 0.81628 | 6.00E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene46346 | 0.832602 | 8.61E-56 | -1.69E-46 |
| MS.gene051941 | MS.gene46346 | 0.850827 | 1.32E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene46346 | 0.850683 | 1.45E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene46346 | 0.808263 | 3.37E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene46346 | 0.819454 | 1.15E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene46346 | 0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene46346 | 0.846375 | 2.26E-59 | -1.69E-46 |
| MS.gene052421 | MS.gene46346 | 0.847601 | 1.04E-59 | -1.69E-46 |
| MS.gene052481 | MS.gene46346 | 0.809366 | 1.96E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene46346 | 0.80118 | 1.02E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene46346 | 0.825839 | 3.77E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene46346 | 0.831822 | 1.34E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene46346 | 0.825958 | 3.53E-54 | -1.69E-46 |
| MS.gene052870 | MS.gene46346 | 0.801063 | 1.07E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene46346 | 0.801902 | 7.23E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene46346 | 0.812799 | 3.54E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene46346 | 0.815554 | 8.71E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene46346 | 0.801989 | 6.94E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene46346 | 0.820269 | 7.50E-53 | -1.69E-46 |
| MS.gene053813 | MS.gene46346 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene46346 | 0.826859 | 2.15E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene46346 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene46346 | 0.811162 | 8.04E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene46346 | 0.80528 | 1.44E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene46346 | 0.800086 | 1.70E-48 | -1.69E-46 |
| MS.gene054884 | MS.gene46346 | -0.806643 | 7.45E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene46346 | 0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene46346 | 0.832723 | 8.03E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene46346 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene46346 | 0.861268 | 1.16E-63 | -1.69E-46 |
| MS.gene05553 | MS.gene46346 | 0.814395 | 1.57E-51 | -1.69E-46 |
| MS.gene05556 | MS.gene46346 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene46346 | 0.858303 | 9.04E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene46346 | 0.85761 | 1.45E-62 | -1.69E-46 |
| MS.gene055909 | MS.gene46346 | 0.861876 | 7.54E-64 | -1.69E-46 |
| MS.gene055911 | MS.gene46346 | 0.865082 | 7.64E-65 | -1.69E-46 |
| MS.gene055941 | MS.gene46346 | 0.82172 | 3.47E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene46346 | 0.822017 | 2.97E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene46346 | 0.808842 | 2.54E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene46346 | 0.805541 | 1.27E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene46346 | 0.861808 | 7.91E-64 | -1.69E-46 |
| MS.gene056514 | MS.gene46346 | 0.834037 | 3.78E-56 | -1.69E-46 |
| MS.gene05664 | MS.gene46346 | 0.807451 | 5.02E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene46346 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene056876 | MS.gene46346 | 0.802412 | 5.68E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene46346 | 0.819993 | 8.67E-53 | -1.69E-46 |
| MS.gene057019 | MS.gene46346 | 0.870229 | 1.71E-66 | -1.69E-46 |
| MS.gene057076 | MS.gene46346 | 0.823104 | 1.66E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene46346 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene46346 | 0.813069 | 3.08E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene46346 | 0.81282 | 3.50E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene46346 | 0.848696 | 5.20E-60 | -1.69E-46 |
| MS.gene057749 | MS.gene46346 | 0.830544 | 2.77E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene46346 | 0.836677 | 8.13E-57 | -1.69E-46 |
| MS.gene057856 | MS.gene46346 | 0.853826 | 1.85E-61 | -1.69E-46 |
| MS.gene058007 | MS.gene46346 | 0.954044 | 7.15E-112 | -1.69E-46 |
| MS.gene058019 | MS.gene46346 | 0.815503 | 8.94E-52 | -1.69E-46 |
| MS.gene058090 | MS.gene46346 | 0.805077 | 1.59E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene46346 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene46346 | 0.838549 | 2.69E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene46346 | 0.879777 | 9.45E-70 | -1.69E-46 |
| MS.gene058700 | MS.gene46346 | 0.872874 | 2.27E-67 | -1.69E-46 |
| MS.gene058838 | MS.gene46346 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene058928 | MS.gene46346 | 0.808679 | 2.75E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene46346 | 0.82746 | 1.55E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene46346 | 0.800059 | 1.72E-48 | -1.69E-46 |
| MS.gene059082 | MS.gene46346 | 0.82253 | 2.25E-53 | -1.69E-46 |
| MS.gene059141 | MS.gene46346 | 0.805278 | 1.44E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene46346 | 0.815235 | 1.03E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene46346 | 0.821012 | 5.06E-53 | -1.69E-46 |
| MS.gene059455 | MS.gene46346 | 0.834067 | 3.71E-56 | -1.69E-46 |
| MS.gene059462 | MS.gene46346 | 0.822777 | 1.98E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene46346 | 0.852017 | 6.08E-61 | -1.69E-46 |
| MS.gene059676 | MS.gene46346 | 0.827835 | 1.26E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene46346 | 0.847802 | 9.18E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene46346 | 0.821063 | 4.93E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene46346 | 0.831401 | 1.70E-55 | -1.69E-46 |
| MS.gene059807 | MS.gene46346 | 0.831076 | 2.05E-55 | -1.69E-46 |
| MS.gene060372 | MS.gene46346 | 0.819903 | 9.10E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene46346 | 0.83303 | 6.74E-56 | -1.69E-46 |
| MS.gene060804 | MS.gene46346 | 0.808242 | 3.41E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene46346 | 0.826213 | 3.07E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene46346 | 0.84557 | 3.74E-59 | -1.69E-46 |
| MS.gene06097 | MS.gene46346 | 0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene46346 | 0.8312 | 1.91E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058007 | MS.gene46346 | PPI |
| MS.gene015314 | MS.gene46346 | PPI |
| MS.gene011647 | MS.gene46346 | PPI |
| MS.gene60397 | MS.gene46346 | PPI |
| MS.gene011648 | MS.gene46346 | PPI |
| MS.gene09658 | MS.gene46346 | PPI |
| MS.gene058006 | MS.gene46346 | PPI |
| MS.gene059674 | MS.gene46346 | PPI |
| MS.gene60396 | MS.gene46346 | PPI |
| MS.gene46347 | MS.gene46346 | PPI |
| MS.gene011649 | MS.gene46346 | PPI |
| MS.gene21471 | MS.gene46346 | PPI |
| MS.gene60398 | MS.gene46346 | PPI |
| MS.gene019141 | MS.gene46346 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46346.t1 | MTR_4g098570 | 97.566 | 534 | 13 | 0 | 1 | 534 | 1 | 534 | 0.0 | 1079 |
| MS.gene46346.t1 | MTR_4g098610 | 88.910 | 532 | 59 | 0 | 1 | 532 | 1 | 532 | 0.0 | 912 |
| MS.gene46346.t1 | MTR_5g014310 | 74.503 | 553 | 118 | 7 | 1 | 534 | 1 | 549 | 0.0 | 801 |
| MS.gene46346.t1 | MTR_1g115140 | 57.435 | 538 | 215 | 4 | 9 | 534 | 1 | 536 | 0.0 | 622 |
| MS.gene46346.t1 | MTR_1g115175 | 58.912 | 533 | 200 | 6 | 16 | 534 | 5 | 532 | 0.0 | 615 |
| MS.gene46346.t1 | MTR_1g115190 | 58.473 | 537 | 205 | 5 | 11 | 532 | 1 | 534 | 0.0 | 597 |
| MS.gene46346.t1 | MTR_1g077670 | 34.845 | 485 | 253 | 8 | 25 | 504 | 23 | 449 | 2.67e-96 | 301 |
| MS.gene46346.t1 | MTR_4g051575 | 44.807 | 337 | 179 | 4 | 36 | 370 | 29 | 360 | 2.37e-92 | 290 |
| MS.gene46346.t1 | MTR_1g077660 | 40.000 | 360 | 209 | 3 | 41 | 399 | 38 | 391 | 4.47e-92 | 290 |
| MS.gene46346.t1 | MTR_7g106260 | 43.314 | 344 | 185 | 3 | 49 | 389 | 42 | 378 | 1.31e-86 | 276 |
| MS.gene46346.t1 | MTR_8g104110 | 32.707 | 532 | 308 | 11 | 11 | 505 | 37 | 555 | 3.06e-86 | 278 |
| MS.gene46346.t1 | MTR_2g087288 | 36.765 | 408 | 241 | 7 | 49 | 446 | 37 | 437 | 3.29e-84 | 268 |
| MS.gene46346.t1 | MTR_6g084680 | 32.505 | 523 | 299 | 10 | 22 | 505 | 69 | 576 | 3.93e-81 | 265 |
| MS.gene46346.t1 | MTR_1g111250 | 34.086 | 487 | 286 | 10 | 48 | 511 | 73 | 547 | 6.10e-80 | 260 |
| MS.gene46346.t1 | MTR_7g094770 | 39.881 | 336 | 181 | 6 | 54 | 381 | 61 | 383 | 1.12e-79 | 256 |
| MS.gene46346.t1 | MTR_2g087285 | 39.595 | 346 | 201 | 4 | 49 | 391 | 37 | 377 | 7.92e-79 | 254 |
| MS.gene46346.t1 | MTR_8g104130 | 33.400 | 497 | 279 | 9 | 49 | 505 | 59 | 543 | 2.00e-78 | 257 |
| MS.gene46346.t1 | MTR_8g104120 | 32.227 | 512 | 302 | 11 | 35 | 505 | 46 | 553 | 5.61e-75 | 248 |
| MS.gene46346.t1 | MTR_0710s0020 | 66.480 | 179 | 59 | 1 | 16 | 194 | 6 | 183 | 1.46e-74 | 234 |
| MS.gene46346.t1 | MTR_4g051575 | 43.243 | 222 | 120 | 3 | 151 | 370 | 9 | 226 | 2.09e-52 | 181 |
| MS.gene46346.t1 | MTR_1g110380 | 38.235 | 102 | 39 | 2 | 126 | 227 | 6 | 83 | 4.26e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46346.t1 | AT4G17970 | 62.795 | 551 | 142 | 8 | 1 | 506 | 1 | 533 | 0.0 | 664 |
| MS.gene46346.t1 | AT5G46610 | 58.802 | 551 | 179 | 9 | 1 | 519 | 1 | 535 | 0.0 | 613 |
| MS.gene46346.t1 | AT5G46600 | 57.383 | 535 | 193 | 7 | 9 | 516 | 10 | 536 | 0.0 | 601 |
| MS.gene46346.t1 | AT5G46610 | 55.172 | 551 | 175 | 10 | 1 | 519 | 1 | 511 | 0.0 | 558 |
| MS.gene46346.t1 | AT5G46610 | 52.087 | 551 | 169 | 10 | 1 | 519 | 1 | 488 | 2.22e-178 | 511 |
| MS.gene46346.t1 | AT4G00910 | 34.818 | 494 | 265 | 8 | 29 | 519 | 42 | 481 | 6.16e-96 | 300 |
| MS.gene46346.t1 | AT1G08440 | 43.218 | 317 | 176 | 2 | 49 | 363 | 13 | 327 | 3.21e-88 | 281 |
| MS.gene46346.t1 | AT3G18440 | 33.204 | 515 | 303 | 9 | 43 | 518 | 73 | 585 | 4.64e-83 | 270 |
| MS.gene46346.t1 | AT1G08430 | 38.551 | 345 | 208 | 2 | 49 | 389 | 13 | 357 | 6.86e-80 | 259 |
| MS.gene46346.t1 | AT1G18420 | 34.000 | 500 | 288 | 12 | 46 | 505 | 80 | 577 | 3.19e-79 | 259 |
| MS.gene46346.t1 | AT3G11680 | 39.726 | 365 | 213 | 2 | 27 | 389 | 16 | 375 | 4.04e-78 | 254 |
| MS.gene46346.t1 | AT3G11680 | 39.726 | 365 | 213 | 2 | 27 | 389 | 14 | 373 | 5.38e-78 | 253 |
| MS.gene46346.t1 | AT1G18420 | 33.871 | 496 | 286 | 12 | 50 | 505 | 1 | 494 | 9.59e-78 | 253 |
| MS.gene46346.t1 | AT2G27240 | 40.413 | 339 | 184 | 4 | 49 | 379 | 13 | 341 | 1.56e-75 | 247 |
| MS.gene46346.t1 | AT2G27240 | 38.017 | 363 | 185 | 5 | 49 | 379 | 13 | 367 | 2.98e-72 | 239 |
| MS.gene46346.t1 | AT2G17470 | 31.006 | 487 | 304 | 11 | 49 | 508 | 31 | 512 | 5.64e-68 | 228 |
| MS.gene46346.t1 | AT2G17470 | 31.006 | 487 | 304 | 11 | 49 | 508 | 53 | 534 | 7.60e-68 | 229 |
| MS.gene46346.t1 | AT1G68600 | 29.524 | 525 | 325 | 14 | 20 | 505 | 11 | 529 | 1.84e-65 | 222 |
| MS.gene46346.t1 | AT1G25480 | 30.800 | 500 | 303 | 12 | 44 | 505 | 47 | 541 | 1.98e-65 | 222 |
| MS.gene46346.t1 | AT4G17585 | 58.095 | 105 | 31 | 4 | 1 | 103 | 1 | 94 | 2.87e-23 | 96.7 |
Find 130 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTCAGCTTTGTTAAAT+TGG | 0.126341 | 8.4:-24391426 | MS.gene46346:CDS |
| ATCTGTTCGAGTCCTGTTTA+AGG | 0.156833 | 8.4:-24391698 | MS.gene46346:CDS |
| TCATAATTCTTCTTTATATA+AGG | 0.201014 | 8.4:+24393049 | None:intergenic |
| GTATTGGCCAAAATGCTATT+TGG | 0.201944 | 8.4:-24393843 | MS.gene46346:CDS |
| TGTATCATTGCTTTATATAT+TGG | 0.204199 | 8.4:-24393881 | MS.gene46346:CDS |
| GCCTTATAACCTTTGTATAT+TGG | 0.218651 | 8.4:+24392652 | None:intergenic |
| CAAAGGTTATAAGGCTGTTT+TGG | 0.221522 | 8.4:-24392644 | MS.gene46346:CDS |
| CTGTTCAGCTGATACACTTT+TGG | 0.231447 | 8.4:+24391399 | None:intergenic |
| GGAAATGTTCTTCGCCAATT+TGG | 0.242345 | 8.4:-24392259 | MS.gene46346:CDS |
| ATATTGGAGCCACTCTTTAA+AGG | 0.248165 | 8.4:-24393865 | MS.gene46346:CDS |
| CGGCATACCTTCTATAGATT+TGG | 0.257767 | 8.4:+24392820 | None:intergenic |
| GACACTATTAGCAGGATTAT+TGG | 0.267423 | 8.4:-24393543 | MS.gene46346:CDS |
| AGATGATCAGAGAGTATTTC+TGG | 0.270507 | 8.4:+24391592 | None:intergenic |
| TCAAGGCCGTCATGAACTTT+AGG | 0.275500 | 8.4:+24394084 | None:intergenic |
| TGACAGCCCAAATAGCATTT+TGG | 0.284563 | 8.4:+24393836 | None:intergenic |
| GATTATGTTGCAAATGCTTC+TGG | 0.287896 | 8.4:-24393509 | MS.gene46346:CDS |
| AGGTCTTCCCCTGACCAATT+TGG | 0.290568 | 8.4:+24392878 | None:intergenic |
| ATAAAGAAGAATTATGATTA+TGG | 0.291591 | 8.4:-24393043 | MS.gene46346:CDS |
| AATGCATGGATCACCCTTCT+TGG | 0.296126 | 8.4:+24393928 | None:intergenic |
| GAAACCAAGAGTTGATGTTT+TGG | 0.300117 | 8.4:-24391146 | MS.gene46346:CDS |
| TCCAATATACAAAGGTTATA+AGG | 0.319254 | 8.4:-24392653 | MS.gene46346:CDS |
| CTACTCCATGAGAAGGTAAA+TGG | 0.323183 | 8.4:+24391119 | None:intergenic |
| ATGTTATGCTACCTGAATTT+CGG | 0.325615 | 8.4:+24392201 | None:intergenic |
| CTGTTTGAGAACCGAAATTC+AGG | 0.333743 | 8.4:-24392212 | MS.gene46346:intron |
| TGTTAACTGTTTCAAGTTAC+CGG | 0.336402 | 8.4:-24392991 | MS.gene46346:CDS |
| GAAATGTTCTTCGCCAATTT+GGG | 0.342154 | 8.4:-24392258 | MS.gene46346:CDS |
| GTTGGGAGCCAAGGCATTCT+AGG | 0.347134 | 8.4:-24392321 | MS.gene46346:CDS |
| TGCTTCTTTGCTTGTGGAAA+CGG | 0.348987 | 8.4:-24391269 | MS.gene46346:CDS |
| CTACCACTGTATACCCAAAT+TGG | 0.350168 | 8.4:+24392245 | None:intergenic |
| GTTGTTTGCTTGGATGTCAT+TGG | 0.352489 | 8.4:+24391507 | None:intergenic |
| TGTGGAAACGGTGGCAAAAC+TGG | 0.354584 | 8.4:-24391257 | MS.gene46346:CDS |
| GAGCCACTCTTTAAAGGTAT+TGG | 0.357520 | 8.4:-24393859 | MS.gene46346:CDS |
| AAAGGATCCCTTGTTTGGTT+TGG | 0.357623 | 8.4:-24393981 | MS.gene46346:CDS |
| GCTTAAAAGGATCCCTTGTT+TGG | 0.364998 | 8.4:-24393986 | MS.gene46346:CDS |
| TCCACAGCTTTCAAACTTGA+AGG | 0.368733 | 8.4:-24392848 | MS.gene46346:CDS |
| TATTGGCCAAAATGCTATTT+GGG | 0.383356 | 8.4:-24393842 | MS.gene46346:CDS |
| TTAGTATTTCCAAATTGGTC+AGG | 0.390261 | 8.4:-24392887 | MS.gene46346:CDS |
| TCTCAACCACGACTCTTCTT+AGG | 0.410653 | 8.4:-24391532 | MS.gene46346:CDS |
| AAAGGGCTGAATAGAGGATT+GGG | 0.415501 | 8.4:-24393566 | MS.gene46346:CDS |
| TTATGCAAGGGTCCTTAAAC+AGG | 0.417088 | 8.4:+24391686 | None:intergenic |
| TTCTCCAAAACATCAACTCT+TGG | 0.424004 | 8.4:+24391142 | None:intergenic |
| GTTTGGTTTGGAAGACTACT+TGG | 0.424392 | 8.4:-24393969 | MS.gene46346:CDS |
| TCCTAGCCATAGCCATTTCA+AGG | 0.435967 | 8.4:+24394067 | None:intergenic |
| AGTTCATGACGGCCTTGAAA+TGG | 0.436973 | 8.4:-24394079 | MS.gene46346:CDS |
| AAAGAAGCAAAAGCAGCAAA+AGG | 0.440203 | 8.4:+24391283 | None:intergenic |
| GGCCTAGCCAAATCTATAGA+AGG | 0.440228 | 8.4:-24392827 | MS.gene46346:intron |
| TGAAACAGTTAACAAGTTGA+AGG | 0.442800 | 8.4:+24393000 | None:intergenic |
| TTAACAAGTTGAAGGTTAAG+AGG | 0.444355 | 8.4:+24393008 | None:intergenic |
| ATTGACGAAGTTGAAGAACT+TGG | 0.456183 | 8.4:-24391226 | MS.gene46346:CDS |
| TGTTTAAGGACCCTTGCATA+AGG | 0.456552 | 8.4:-24391684 | MS.gene46346:CDS |
| CTTTCCATGAGAGGCGGCTA+TGG | 0.460245 | 8.4:+24391474 | None:intergenic |
| AAAGGAAGAAGAACAATTAC+CGG | 0.462474 | 8.4:-24391374 | MS.gene46346:CDS |
| GTGGCGAAAACCTTGAGAAA+TGG | 0.462619 | 8.4:-24394038 | MS.gene46346:CDS |
| CGCTTCTTCACCATAGCCAT+TGG | 0.466959 | 8.4:-24392938 | MS.gene46346:CDS |
| GAGAACCATTTACCTTCTCA+TGG | 0.469642 | 8.4:-24391124 | MS.gene46346:CDS |
| TGGCGAGCATGTTGTTTGCT+TGG | 0.473062 | 8.4:+24391497 | None:intergenic |
| ATTTAACAAAGCTGAAGAAT+CGG | 0.475562 | 8.4:+24391429 | None:intergenic |
| CAAAGGGCTGAATAGAGGAT+TGG | 0.475828 | 8.4:-24393567 | MS.gene46346:CDS |
| TTATGCAAAGGGCTGAATAG+AGG | 0.477408 | 8.4:-24393572 | MS.gene46346:CDS |
| GTGATCCATGCATTCAAAGT+TGG | 0.477949 | 8.4:-24393919 | MS.gene46346:CDS |
| TCGCAACAGTATGTAAAAGT+TGG | 0.479295 | 8.4:-24392280 | MS.gene46346:CDS |
| CGGTTCTCAAACAGCCATGT+AGG | 0.484364 | 8.4:+24392221 | None:intergenic |
| GCCACCATAGCCGCCTCTCA+TGG | 0.486291 | 8.4:-24391478 | MS.gene46346:CDS |
| GTTGTGTATGGCAGGATCTA+CGG | 0.486401 | 8.4:-24393092 | MS.gene46346:intron |
| GTAGGCATTGCATGCAAGTT+GGG | 0.489768 | 8.4:-24392338 | MS.gene46346:intron |
| TGCATGCAAGTTGGGAGCCA+AGG | 0.495437 | 8.4:-24392330 | MS.gene46346:CDS |
| TACGTTTCTTCCATTTCTCA+AGG | 0.504702 | 8.4:+24394028 | None:intergenic |
| GCCTTCAAGTTTGAAAGCTG+TGG | 0.506523 | 8.4:+24392847 | None:intergenic |
| GCGCCGACTTCTTATGCTGT+TGG | 0.511246 | 8.4:+24391624 | None:intergenic |
| TCCATGAGAGGCGGCTATGG+TGG | 0.516245 | 8.4:+24391477 | None:intergenic |
| AGTTGAAGAACTTGGGAGGT+TGG | 0.516985 | 8.4:-24391218 | MS.gene46346:CDS |
| AAGACTCATGAAAAGACAAA+TGG | 0.520278 | 8.4:+24392910 | None:intergenic |
| ATAAACCAACTTTGAATGCA+TGG | 0.520687 | 8.4:+24393914 | None:intergenic |
| GCTTACCAATGTTTCATCTG+TGG | 0.526234 | 8.4:+24392612 | None:intergenic |
| TAGTATTTCCAAATTGGTCA+GGG | 0.528241 | 8.4:-24392886 | MS.gene46346:CDS |
| AATGGCACAGCCAATGGCTA+TGG | 0.530289 | 8.4:+24392928 | None:intergenic |
| GATCTACGGCCACTTATATG+AGG | 0.539251 | 8.4:-24393078 | MS.gene46346:CDS |
| TTGACGAAGTTGAAGAACTT+GGG | 0.540827 | 8.4:-24391225 | MS.gene46346:CDS |
| AAGACAAATGGCACAGCCAA+TGG | 0.541186 | 8.4:+24392922 | None:intergenic |
| TGACAGTACCTAGAATGCCT+TGG | 0.545491 | 8.4:+24392313 | None:intergenic |
| GGTTCTCAAACAGCCATGTA+GGG | 0.547487 | 8.4:+24392222 | None:intergenic |
| TGACGGCCTTGAAATGGCTA+TGG | 0.548765 | 8.4:-24394073 | MS.gene46346:CDS |
| TGGAAGACTACTTGGAAGGT+GGG | 0.550772 | 8.4:-24393961 | MS.gene46346:CDS |
| CAGGGGCAACTTTATGCAAA+GGG | 0.551257 | 8.4:-24393583 | MS.gene46346:CDS |
| TCTGCTGCTAGCCTTATGCA+AGG | 0.556979 | 8.4:+24391673 | None:intergenic |
| TATACAGTGGTAGCCCTACA+TGG | 0.561138 | 8.4:-24392235 | MS.gene46346:CDS |
| GCCTTGAAATGGCTATGGCT+AGG | 0.564062 | 8.4:-24394068 | MS.gene46346:CDS |
| GGATTGGGGACACTATTAGC+AGG | 0.564656 | 8.4:-24393551 | MS.gene46346:CDS |
| TGTAGGCATTGCATGCAAGT+TGG | 0.564912 | 8.4:-24392339 | MS.gene46346:intron |
| AGAACAATTACCGGTACGTA+AGG | 0.566107 | 8.4:-24391365 | MS.gene46346:CDS |
| TGGCCAATACCTTTAAAGAG+TGG | 0.568510 | 8.4:+24393856 | None:intergenic |
| AGGAACGAACCTCATATAAG+TGG | 0.569111 | 8.4:+24393069 | None:intergenic |
| GGTTGATCATGTCTTGAAGA+TGG | 0.569323 | 8.4:-24392969 | MS.gene46346:CDS |
| AACAGGACTCGAACAGATTG+TGG | 0.571380 | 8.4:+24391703 | None:intergenic |
| TTGGAAGACTACTTGGAAGG+TGG | 0.573212 | 8.4:-24393962 | MS.gene46346:CDS |
| GCAGGGGCAACTTTATGCAA+AGG | 0.574504 | 8.4:-24393584 | MS.gene46346:intron |
| GTTAACTGTTTCAAGTTACC+GGG | 0.574845 | 8.4:-24392990 | MS.gene46346:CDS |
| AAAATCCACAGATGAAACAT+TGG | 0.576415 | 8.4:-24392617 | MS.gene46346:intron |
| TTTCTCAACACCTTACGTAC+CGG | 0.581127 | 8.4:+24391355 | None:intergenic |
| GAGTGAGCTCTTTCCATGAG+AGG | 0.583770 | 8.4:+24391465 | None:intergenic |
| TTGCATAAGGCTAGCAGCAG+AGG | 0.586458 | 8.4:-24391671 | MS.gene46346:CDS |
| TTCTTTGCTTGTGGAAACGG+TGG | 0.592923 | 8.4:-24391266 | MS.gene46346:CDS |
| GGTTTGGAAGACTACTTGGA+AGG | 0.594153 | 8.4:-24393965 | MS.gene46346:CDS |
| GTAGTCTTCCAAACCAAACA+AGG | 0.594579 | 8.4:+24393973 | None:intergenic |
| CTAATAGAAAACTCATCACC+AGG | 0.594652 | 8.4:+24391175 | None:intergenic |
| TACCTTCTATAGATTTGGCT+AGG | 0.594807 | 8.4:+24392825 | None:intergenic |
| AGAGTATTTCTGGTGAGCAA+TGG | 0.601068 | 8.4:+24391602 | None:intergenic |
| TGTATCAGCTGAACAGACAA+AGG | 0.608885 | 8.4:-24391392 | MS.gene46346:CDS |
| GGTGATATAAAATCATCTGA+AGG | 0.611420 | 8.4:-24392676 | MS.gene46346:CDS |
| CTGCTGCTAGCCTTATGCAA+GGG | 0.615929 | 8.4:+24391674 | None:intergenic |
| TGAAAGCTGTGGAATGATGA+AGG | 0.622018 | 8.4:+24392858 | None:intergenic |
| GAAGAATTATGATTATGGTG+TGG | 0.626346 | 8.4:-24393038 | MS.gene46346:CDS |
| GGCTGTCATGACTGTCGTCG+TGG | 0.630752 | 8.4:-24393821 | MS.gene46346:CDS |
| ACGAAGTTGAAGAACTTGGG+AGG | 0.635974 | 8.4:-24391222 | MS.gene46346:CDS |
| TGGGATGTGATGATCCAAGA+AGG | 0.643369 | 8.4:-24393942 | MS.gene46346:CDS |
| AATCACTCTACTCCATGAGA+AGG | 0.644576 | 8.4:+24391112 | None:intergenic |
| TAGCCAACAGCATAAGAAGT+CGG | 0.647738 | 8.4:-24391627 | MS.gene46346:CDS |
| AGTATTTCCAAATTGGTCAG+GGG | 0.650407 | 8.4:-24392885 | MS.gene46346:CDS |
| ATGATTCCTAAAGTTCATGA+CGG | 0.656090 | 8.4:-24394090 | MS.gene46346:CDS |
| TGTTTCAAAGAGTATACACC+TGG | 0.658227 | 8.4:-24391193 | MS.gene46346:CDS |
| TTGGAGCCTAAGAAGAGTCG+TGG | 0.661184 | 8.4:+24391526 | None:intergenic |
| CAATGGCTATGGTGAAGAAG+CGG | 0.662768 | 8.4:+24392939 | None:intergenic |
| TCTGAAGGTCCAATATACAA+AGG | 0.663082 | 8.4:-24392661 | MS.gene46346:CDS |
| TGAGCTCTTTCCATGAGAGG+CGG | 0.667299 | 8.4:+24391468 | None:intergenic |
| TAGTCTTCCAAACCAAACAA+GGG | 0.674501 | 8.4:+24393974 | None:intergenic |
| AAGGGCTGAATAGAGGATTG+GGG | 0.679447 | 8.4:-24393565 | MS.gene46346:CDS |
| TCGCCAATTTGGGTATACAG+TGG | 0.681644 | 8.4:-24392248 | MS.gene46346:CDS |
| GCTATGGCTAGGAATGAGAG+TGG | 0.689742 | 8.4:-24394057 | MS.gene46346:CDS |
| TCTTCAAGACATGATCAACC+CGG | 0.698255 | 8.4:+24392972 | None:intergenic |
| GGGATGTGATGATCCAAGAA+GGG | 0.699115 | 8.4:-24393941 | MS.gene46346:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAAATAAATATTTATC+AGG | + | chr8.4:24392773-24392792 | None:intergenic | 10.0% |
| !! | ATAAAGAAGAATTATGATTA+TGG | - | chr8.4:24392161-24392180 | MS.gene46346:intron | 15.0% |
| !! | ATAGTAGTTATATTTATAAG+TGG | - | chr8.4:24393152-24393171 | MS.gene46346:intron | 15.0% |
| !! | GGATAATAAATTGAATTAAA+AGG | + | chr8.4:24393471-24393490 | None:intergenic | 15.0% |
| !! | TAGTAGTTATATTTATAAGT+GGG | - | chr8.4:24393153-24393172 | MS.gene46346:intron | 15.0% |
| !! | TCATAATTCTTCTTTATATA+AGG | + | chr8.4:24392158-24392177 | None:intergenic | 15.0% |
| !!! | TATATATTTGATAACCAAAA+TGG | - | chr8.4:24391766-24391785 | MS.gene46346:intron | 15.0% |
| !! | AAACTTATCGAAATTATTTG+TGG | - | chr8.4:24392075-24392094 | MS.gene46346:intron | 20.0% |
| !! | ATAATATCTTGATCTTCAAA+TGG | - | chr8.4:24392827-24392846 | MS.gene46346:intron | 20.0% |
| !! | ATTTGAGCAATTTATAACAA+AGG | + | chr8.4:24391822-24391841 | None:intergenic | 20.0% |
| !! | ATTTGATACGTCTTAAAATT+TGG | + | chr8.4:24393228-24393247 | None:intergenic | 20.0% |
| !! | TAGTTGTAGAAATATGAAAA+AGG | - | chr8.4:24393378-24393397 | MS.gene46346:intron | 20.0% |
| !! | TATATTAGCAACTTATTGTA+AGG | - | chr8.4:24392449-24392468 | MS.gene46346:intron | 20.0% |
| !! | TATTCCATCAATGAATATAA+AGG | + | chr8.4:24393113-24393132 | None:intergenic | 20.0% |
| !! | TGTATCATTGCTTTATATAT+TGG | - | chr8.4:24391323-24391342 | MS.gene46346:CDS | 20.0% |
| !! | TTTGAGCAATTTATAACAAA+GGG | + | chr8.4:24391821-24391840 | None:intergenic | 20.0% |
| !!! | AATACTATTTGAGTTTAGAT+AGG | + | chr8.4:24391436-24391455 | None:intergenic | 20.0% |
| !!! | ATTTGTAATTTTTTTATGGC+AGG | - | chr8.4:24391602-24391621 | MS.gene46346:CDS | 20.0% |
| !!! | ATTTTGACAACAAATATTGT+CGG | + | chr8.4:24391960-24391979 | None:intergenic | 20.0% |
| !!! | TACTTTTTCATCTATGATAT+TGG | - | chr8.4:24391462-24391481 | MS.gene46346:CDS | 20.0% |
| !!! | TGTGTCAATGAATATTTTTA+TGG | - | chr8.4:24392489-24392508 | MS.gene46346:intron | 20.0% |
| !!! | TTACTATATTGTTTCTATCA+TGG | + | chr8.4:24391553-24391572 | None:intergenic | 20.0% |
| !!! | TTTGTAATTTTTTTATGGCA+GGG | - | chr8.4:24391603-24391622 | MS.gene46346:CDS | 20.0% |
| ! | AAAATACAAATAAATGCGAC+CGG | - | chr8.4:24391490-24391509 | MS.gene46346:CDS | 25.0% |
| ! | AATTTAGACTTATCTTTGAG+TGG | + | chr8.4:24393278-24393297 | None:intergenic | 25.0% |
| ! | ACGTATCAAATTATGTTGTT+GGG | - | chr8.4:24393237-24393256 | MS.gene46346:intron | 25.0% |
| ! | ATTTAACAAAGCTGAAGAAT+CGG | + | chr8.4:24393778-24393797 | None:intergenic | 25.0% |
| ! | CTATGTATGTGTTATGAATT+CGG | + | chr8.4:24392407-24392426 | None:intergenic | 25.0% |
| ! | GATACCTTTATATTCATTGA+TGG | - | chr8.4:24393106-24393125 | MS.gene46346:intron | 25.0% |
| ! | TAACACATACATAGTATCAA+AGG | - | chr8.4:24392413-24392432 | MS.gene46346:intron | 25.0% |
| ! | TACTATTTGAACTAGTCAAA+GGG | + | chr8.4:24393138-24393157 | None:intergenic | 25.0% |
| ! | TATGGAAAAATTGAAGTTTC+TGG | - | chr8.4:24392507-24392526 | MS.gene46346:intron | 25.0% |
| ! | TCCAATATACAAAGGTTATA+AGG | - | chr8.4:24392551-24392570 | MS.gene46346:intron | 25.0% |
| !! | AAGAAACGTATGCATATTTT+TGG | - | chr8.4:24391189-24391208 | MS.gene46346:CDS | 25.0% |
| !! | AATTTTCATGGCATTAACTT+TGG | + | chr8.4:24391797-24391816 | None:intergenic | 25.0% |
| !! | ATAACAAAGGGAAATTTTCA+TGG | + | chr8.4:24391809-24391828 | None:intergenic | 25.0% |
| !! | ATTTCGATAAGTTTTCGAAT+TGG | + | chr8.4:24392069-24392088 | None:intergenic | 25.0% |
| !! | GTCTTTTAGTATTTCCAAAT+TGG | - | chr8.4:24392312-24392331 | MS.gene46346:CDS | 25.0% |
| !!! | ATTCTTCAGCTTTGTTAAAT+TGG | - | chr8.4:24393778-24393797 | MS.gene46346:intron | 25.0% |
| !!! | TTAGAATTTGCTAAATCGTA+GGG | + | chr8.4:24393344-24393363 | None:intergenic | 25.0% |
| !!! | TTGTAATTTTTTTATGGCAG+GGG | - | chr8.4:24391604-24391623 | MS.gene46346:CDS | 25.0% |
| AAAATCCACAGATGAAACAT+TGG | - | chr8.4:24392587-24392606 | MS.gene46346:intron | 30.0% | |
| AAAGGAAGAAGAACAATTAC+CGG | - | chr8.4:24393830-24393849 | MS.gene46346:CDS | 30.0% | |
| AAGACTCATGAAAAGACAAA+TGG | + | chr8.4:24392297-24392316 | None:intergenic | 30.0% | |
| AATTCCAAAAGCAAATTCAC+GGG | + | chr8.4:24393190-24393209 | None:intergenic | 30.0% | |
| ACTATTTGAACTAGTCAAAG+GGG | + | chr8.4:24393137-24393156 | None:intergenic | 30.0% | |
| AGTGTGAGCTATATTATACT+TGG | + | chr8.4:24392651-24392670 | None:intergenic | 30.0% | |
| ATAAACCAACTTTGAATGCA+TGG | + | chr8.4:24391293-24391312 | None:intergenic | 30.0% | |
| ATGATTCCTAAAGTTCATGA+CGG | - | chr8.4:24391114-24391133 | MS.gene46346:CDS | 30.0% | |
| ATGTTATGCTACCTGAATTT+CGG | + | chr8.4:24393006-24393025 | None:intergenic | 30.0% | |
| CAATTCCAAAAGCAAATTCA+CGG | + | chr8.4:24393191-24393210 | None:intergenic | 30.0% | |
| CTACTATTTGAACTAGTCAA+AGG | + | chr8.4:24393139-24393158 | None:intergenic | 30.0% | |
| GAAGAATTATGATTATGGTG+TGG | - | chr8.4:24392166-24392185 | MS.gene46346:intron | 30.0% | |
| GACGTATCAAATTATGTTGT+TGG | - | chr8.4:24393236-24393255 | MS.gene46346:intron | 30.0% | |
| GCCTTATAACCTTTGTATAT+TGG | + | chr8.4:24392555-24392574 | None:intergenic | 30.0% | |
| GGTGATATAAAATCATCTGA+AGG | - | chr8.4:24392528-24392547 | MS.gene46346:intron | 30.0% | |
| TAGTATTTCCAAATTGGTCA+GGG | - | chr8.4:24392318-24392337 | MS.gene46346:CDS | 30.0% | |
| TGAATGGATCAAAACAAGAT+TGG | + | chr8.4:24392620-24392639 | None:intergenic | 30.0% | |
| TTAGTATTTCCAAATTGGTC+AGG | - | chr8.4:24392317-24392336 | MS.gene46346:CDS | 30.0% | |
| TTTCGAATTGGTTACAATTG+AGG | + | chr8.4:24392057-24392076 | None:intergenic | 30.0% | |
| ! | ATACTTGGCATGATTTTGAA+TGG | + | chr8.4:24392636-24392655 | None:intergenic | 30.0% |
| ! | TAACTTTGGTAGAACCATTT+TGG | + | chr8.4:24391783-24391802 | None:intergenic | 30.0% |
| ! | TATTGGCCAAAATGCTATTT+GGG | - | chr8.4:24391362-24391381 | MS.gene46346:CDS | 30.0% |
| ! | TGAAACAGTTAACAAGTTGA+AGG | + | chr8.4:24392207-24392226 | None:intergenic | 30.0% |
| ! | TTAACAAGTTGAAGGTTAAG+AGG | + | chr8.4:24392199-24392218 | None:intergenic | 30.0% |
| !! | CTTAGAATTTGCTAAATCGT+AGG | + | chr8.4:24393345-24393364 | None:intergenic | 30.0% |
| !! | TCCTGTTAATTTGTTGTGTA+TGG | - | chr8.4:24392100-24392119 | MS.gene46346:intron | 30.0% |
| !! | TGTTAACTGTTTCAAGTTAC+CGG | - | chr8.4:24392213-24392232 | MS.gene46346:CDS | 30.0% |
| AAAGAAGCAAAAGCAGCAAA+AGG | + | chr8.4:24393924-24393943 | None:intergenic | 35.0% | |
| AGTATTTCCAAATTGGTCAG+GGG | - | chr8.4:24392319-24392338 | MS.gene46346:CDS | 35.0% | |
| ATATTGGAGCCACTCTTTAA+AGG | - | chr8.4:24391339-24391358 | MS.gene46346:CDS | 35.0% | |
| ATTCCAAAAGCAAATTCACG+GGG | + | chr8.4:24393189-24393208 | None:intergenic | 35.0% | |
| ATTGACGAAGTTGAAGAACT+TGG | - | chr8.4:24393978-24393997 | MS.gene46346:CDS | 35.0% | |
| CACAGACAGATTCACAAAAA+TGG | + | chr8.4:24393051-24393070 | None:intergenic | 35.0% | |
| CTAATAGAAAACTCATCACC+AGG | + | chr8.4:24394032-24394051 | None:intergenic | 35.0% | |
| CTTTCTTTCAATCACATCGA+CGG | + | chr8.4:24391894-24391913 | None:intergenic | 35.0% | |
| GAAATGTTCTTCGCCAATTT+GGG | - | chr8.4:24392946-24392965 | MS.gene46346:CDS | 35.0% | |
| GACACTATTAGCAGGATTAT+TGG | - | chr8.4:24391661-24391680 | MS.gene46346:CDS | 35.0% | |
| GACTTAGTACGCATAATTTG+TGG | + | chr8.4:24392717-24392736 | None:intergenic | 35.0% | |
| GATTATGTTGCAAATGCTTC+TGG | - | chr8.4:24391695-24391714 | MS.gene46346:CDS | 35.0% | |
| GCCATACACAACAAATTAAC+AGG | + | chr8.4:24392104-24392123 | None:intergenic | 35.0% | |
| TACCTTCTATAGATTTGGCT+AGG | + | chr8.4:24392382-24392401 | None:intergenic | 35.0% | |
| TACGTTTCTTCCATTTCTCA+AGG | + | chr8.4:24391179-24391198 | None:intergenic | 35.0% | |
| TAGTCTTCCAAACCAAACAA+GGG | + | chr8.4:24391233-24391252 | None:intergenic | 35.0% | |
| TCGCAACAGTATGTAAAAGT+TGG | - | chr8.4:24392924-24392943 | MS.gene46346:CDS | 35.0% | |
| TCTGAAGGTCCAATATACAA+AGG | - | chr8.4:24392543-24392562 | MS.gene46346:intron | 35.0% | |
| TTCTCCAAAACATCAACTCT+TGG | + | chr8.4:24394065-24394084 | None:intergenic | 35.0% | |
| TTGACGAAGTTGAAGAACTT+GGG | - | chr8.4:24393979-24393998 | MS.gene46346:CDS | 35.0% | |
| ! | ACTTTTACATACTGTTGCGA+TGG | + | chr8.4:24392924-24392943 | None:intergenic | 35.0% |
| ! | CAAAGGTTATAAGGCTGTTT+TGG | - | chr8.4:24392560-24392579 | MS.gene46346:intron | 35.0% |
| ! | GCAGTTGCAGTTTTTGTAAT+AGG | - | chr8.4:24391743-24391762 | MS.gene46346:intron | 35.0% |
| ! | GGTTGTGTTTTCAATTGTGT+AGG | - | chr8.4:24392848-24392867 | MS.gene46346:CDS | 35.0% |
| ! | GTATTGGCCAAAATGCTATT+TGG | - | chr8.4:24391361-24391380 | MS.gene46346:CDS | 35.0% |
| ! | TGTTTCAAAGAGTATACACC+TGG | - | chr8.4:24394011-24394030 | MS.gene46346:CDS | 35.0% |
| !! | AGATGATCAGAGAGTATTTC+TGG | + | chr8.4:24393615-24393634 | None:intergenic | 35.0% |
| !! | GTTAACTGTTTCAAGTTACC+GGG | - | chr8.4:24392214-24392233 | MS.gene46346:CDS | 35.0% |
| !! | GTTAATTTGTTGTGTATGGC+AGG | - | chr8.4:24392104-24392123 | MS.gene46346:intron | 35.0% |
| !! | TTTTTGGTGAGAGGCTTAAA+AGG | - | chr8.4:24391205-24391224 | MS.gene46346:CDS | 35.0% |
| !!! | GAAACCAAGAGTTGATGTTT+TGG | - | chr8.4:24394058-24394077 | MS.gene46346:CDS | 35.0% |
| !!! | GTATGCATATTTTTGGTGAG+AGG | - | chr8.4:24391196-24391215 | MS.gene46346:CDS | 35.0% |
| AAAGGGCTGAATAGAGGATT+GGG | - | chr8.4:24391638-24391657 | MS.gene46346:CDS | 40.0% | |
| AAATAACTCCCGCGTAAAGT+GGG | - | chr8.4:24393307-24393326 | MS.gene46346:intron | 40.0% | |
| ACAAATAAATGCGACCGGTA+CGG | - | chr8.4:24391495-24391514 | MS.gene46346:CDS | 40.0% | |
| ACAGATTGTGGTGTCTGAAA+AGG | + | chr8.4:24393492-24393511 | None:intergenic | 40.0% | |
| AGAACAATTACCGGTACGTA+AGG | - | chr8.4:24393839-24393858 | MS.gene46346:CDS | 40.0% | |
| AGGAACGAACCTCATATAAG+TGG | + | chr8.4:24392138-24392157 | None:intergenic | 40.0% | |
| ATATAGCTCACACTAAGAGC+TGG | - | chr8.4:24392657-24392676 | MS.gene46346:CDS | 40.0% | |
| ATCTGTTCGAGTCCTGTTTA+AGG | - | chr8.4:24393506-24393525 | MS.gene46346:CDS | 40.0% | |
| CGGCATACCTTCTATAGATT+TGG | + | chr8.4:24392387-24392406 | None:intergenic | 40.0% | |
| CTACCACTGTATACCCAAAT+TGG | + | chr8.4:24392962-24392981 | None:intergenic | 40.0% | |
| CTACTCCATGAGAAGGTAAA+TGG | + | chr8.4:24394088-24394107 | None:intergenic | 40.0% | |
| CTGTTTGAGAACCGAAATTC+AGG | - | chr8.4:24392992-24393011 | MS.gene46346:CDS | 40.0% | |
| GAGAACCATTTACCTTCTCA+TGG | - | chr8.4:24394080-24394099 | MS.gene46346:CDS | 40.0% | |
| GCTACAAGATAGTGCAAAGA+AGG | + | chr8.4:24392023-24392042 | None:intergenic | 40.0% | |
| GCTTAAAAGGATCCCTTGTT+TGG | - | chr8.4:24391218-24391237 | MS.gene46346:CDS | 40.0% | |
| GCTTACCAATGTTTCATCTG+TGG | + | chr8.4:24392595-24392614 | None:intergenic | 40.0% | |
| GGAAATGTTCTTCGCCAATT+TGG | - | chr8.4:24392945-24392964 | MS.gene46346:CDS | 40.0% | |
| GGTTGATCATGTCTTGAAGA+TGG | - | chr8.4:24392235-24392254 | MS.gene46346:CDS | 40.0% | |
| GTAGTCTTCCAAACCAAACA+AGG | + | chr8.4:24391234-24391253 | None:intergenic | 40.0% | |
| GTGATCCATGCATTCAAAGT+TGG | - | chr8.4:24391285-24391304 | MS.gene46346:CDS | 40.0% | |
| GTTGTTTGCTTGGATGTCAT+TGG | + | chr8.4:24393700-24393719 | None:intergenic | 40.0% | |
| TAGCCAACAGCATAAGAAGT+CGG | - | chr8.4:24393577-24393596 | MS.gene46346:CDS | 40.0% | |
| TCCACAGCTTTCAAACTTGA+AGG | - | chr8.4:24392356-24392375 | MS.gene46346:intron | 40.0% | |
| TCTTCAAGACATGATCAACC+CGG | + | chr8.4:24392235-24392254 | None:intergenic | 40.0% | |
| TGAAAGCTGTGGAATGATGA+AGG | + | chr8.4:24392349-24392368 | None:intergenic | 40.0% | |
| TGCTTCTTTGCTTGTGGAAA+CGG | - | chr8.4:24393935-24393954 | MS.gene46346:CDS | 40.0% | |
| TGTATCAGCTGAACAGACAA+AGG | - | chr8.4:24393812-24393831 | MS.gene46346:CDS | 40.0% | |
| TGTTTAAGGACCCTTGCATA+AGG | - | chr8.4:24393520-24393539 | MS.gene46346:CDS | 40.0% | |
| TTATGCAAAGGGCTGAATAG+AGG | - | chr8.4:24391632-24391651 | MS.gene46346:CDS | 40.0% | |
| TTATGCAAGGGTCCTTAAAC+AGG | + | chr8.4:24393521-24393540 | None:intergenic | 40.0% | |
| TTTCTCAACACCTTACGTAC+CGG | + | chr8.4:24393852-24393871 | None:intergenic | 40.0% | |
| TTTGCTAAATCGTAGGGTGA+AGG | + | chr8.4:24393338-24393357 | None:intergenic | 40.0% | |
| ! | AAAGGATCCCTTGTTTGGTT+TGG | - | chr8.4:24391223-24391242 | MS.gene46346:CDS | 40.0% |
| ! | CTGTTCAGCTGATACACTTT+TGG | + | chr8.4:24393808-24393827 | None:intergenic | 40.0% |
| ! | GAGCCACTCTTTAAAGGTAT+TGG | - | chr8.4:24391345-24391364 | MS.gene46346:CDS | 40.0% |
| ! | GAGTCGTGGTTGAGATTTTA+TGG | + | chr8.4:24393667-24393686 | None:intergenic | 40.0% |
| ! | TGACAGCCCAAATAGCATTT+TGG | + | chr8.4:24391371-24391390 | None:intergenic | 40.0% |
| ! | TGCTTTTGCTTCTTTGCTTG+TGG | - | chr8.4:24393929-24393948 | MS.gene46346:CDS | 40.0% |
| ! | TGGCCAATACCTTTAAAGAG+TGG | + | chr8.4:24391351-24391370 | None:intergenic | 40.0% |
| !! | AGAGTATTTCTGGTGAGCAA+TGG | + | chr8.4:24393605-24393624 | None:intergenic | 40.0% |
| !! | GTTTGGTTTGGAAGACTACT+TGG | - | chr8.4:24391235-24391254 | MS.gene46346:CDS | 40.0% |
| AACAGGACTCGAACAGATTG+TGG | + | chr8.4:24393504-24393523 | None:intergenic | 45.0% | |
| AAGACAAATGGCACAGCCAA+TGG | + | chr8.4:24392285-24392304 | None:intergenic | 45.0% | |
| AAGGGCTGAATAGAGGATTG+GGG | - | chr8.4:24391639-24391658 | MS.gene46346:CDS | 45.0% | |
| AATAACTCCCGCGTAAAGTG+GGG | - | chr8.4:24393308-24393327 | MS.gene46346:intron | 45.0% | |
| AATGCATGGATCACCCTTCT+TGG | + | chr8.4:24391279-24391298 | None:intergenic | 45.0% | |
| ACGAAGTTGAAGAACTTGGG+AGG | - | chr8.4:24393982-24394001 | MS.gene46346:CDS | 45.0% | |
| AGTTCATGACGGCCTTGAAA+TGG | - | chr8.4:24391125-24391144 | MS.gene46346:CDS | 45.0% | |
| AGTTGAAGAACTTGGGAGGT+TGG | - | chr8.4:24393986-24394005 | MS.gene46346:CDS | 45.0% | |
| CAAAGGGCTGAATAGAGGAT+TGG | - | chr8.4:24391637-24391656 | MS.gene46346:CDS | 45.0% | |
| CAAATAACTCCCGCGTAAAG+TGG | - | chr8.4:24393306-24393325 | MS.gene46346:intron | 45.0% | |
| CAATGGCTATGGTGAAGAAG+CGG | + | chr8.4:24392268-24392287 | None:intergenic | 45.0% | |
| CACTTTACGCGGGAGTTATT+TGG | + | chr8.4:24393308-24393327 | None:intergenic | 45.0% | |
| CAGGGGCAACTTTATGCAAA+GGG | - | chr8.4:24391621-24391640 | MS.gene46346:CDS | 45.0% | |
| GATCTACGGCCACTTATATG+AGG | - | chr8.4:24392126-24392145 | MS.gene46346:intron | 45.0% | |
| GCACTATCTTGTAGCTAGTC+TGG | - | chr8.4:24392028-24392047 | MS.gene46346:intron | 45.0% | |
| GGCCTAGCCAAATCTATAGA+AGG | - | chr8.4:24392377-24392396 | MS.gene46346:intron | 45.0% | |
| GGGATGTGATGATCCAAGAA+GGG | - | chr8.4:24391263-24391282 | MS.gene46346:CDS | 45.0% | |
| GGTTCTCAAACAGCCATGTA+GGG | + | chr8.4:24392985-24393004 | None:intergenic | 45.0% | |
| GGTTTGGAAGACTACTTGGA+AGG | - | chr8.4:24391239-24391258 | MS.gene46346:CDS | 45.0% | |
| GTGGCGAAAACCTTGAGAAA+TGG | - | chr8.4:24391166-24391185 | MS.gene46346:CDS | 45.0% | |
| GTTGTGTATGGCAGGATCTA+CGG | - | chr8.4:24392112-24392131 | MS.gene46346:intron | 45.0% | |
| TATACAGTGGTAGCCCTACA+TGG | - | chr8.4:24392969-24392988 | MS.gene46346:CDS | 45.0% | |
| TCAAGGCCGTCATGAACTTT+AGG | + | chr8.4:24391123-24391142 | None:intergenic | 45.0% | |
| TCCTAGCCATAGCCATTTCA+AGG | + | chr8.4:24391140-24391159 | None:intergenic | 45.0% | |
| TCGCCAATTTGGGTATACAG+TGG | - | chr8.4:24392956-24392975 | MS.gene46346:CDS | 45.0% | |
| TCTCAACCACGACTCTTCTT+AGG | - | chr8.4:24393672-24393691 | MS.gene46346:intron | 45.0% | |
| TGACAGTACCTAGAATGCCT+TGG | + | chr8.4:24392894-24392913 | None:intergenic | 45.0% | |
| TGGAAGACTACTTGGAAGGT+GGG | - | chr8.4:24391243-24391262 | MS.gene46346:CDS | 45.0% | |
| TGGGATGTGATGATCCAAGA+AGG | - | chr8.4:24391262-24391281 | MS.gene46346:CDS | 45.0% | |
| TTCTTTGCTTGTGGAAACGG+TGG | - | chr8.4:24393938-24393957 | MS.gene46346:CDS | 45.0% | |
| TTGGAAGACTACTTGGAAGG+TGG | - | chr8.4:24391242-24391261 | MS.gene46346:CDS | 45.0% | |
| ! | CTATCTTGTAGCTAGTCTGG+AGG | - | chr8.4:24392031-24392050 | MS.gene46346:intron | 45.0% |
| ! | GAGATTTTATGGCTGCGTTG+AGG | + | chr8.4:24393656-24393675 | None:intergenic | 45.0% |
| ! | GCCTTCAAGTTTGAAAGCTG+TGG | + | chr8.4:24392360-24392379 | None:intergenic | 45.0% |
| ! | GTAGGCATTGCATGCAAGTT+GGG | - | chr8.4:24392866-24392885 | MS.gene46346:CDS | 45.0% |
| ! | TGTAGGCATTGCATGCAAGT+TGG | - | chr8.4:24392865-24392884 | MS.gene46346:CDS | 45.0% |
| !!! | TTTAATTTGTAATTTTTTTA+TGG | - | chr8.4:24391598-24391617 | MS.gene46346:CDS | 5.0% |
| AATGGCACAGCCAATGGCTA+TGG | + | chr8.4:24392279-24392298 | None:intergenic | 50.0% | |
| AGGTCTTCCCCTGACCAATT+TGG | + | chr8.4:24392329-24392348 | None:intergenic | 50.0% | |
| ATAACTCCCGCGTAAAGTGG+GGG | - | chr8.4:24393309-24393328 | MS.gene46346:intron | 50.0% | |
| ATCCACAATTGCTGCCGTAC+CGG | + | chr8.4:24391512-24391531 | None:intergenic | 50.0% | |
| CCAAAAGCAAATTCACGGGG+TGG | + | chr8.4:24393186-24393205 | None:intergenic | 50.0% | |
| CGCTTCTTCACCATAGCCAT+TGG | - | chr8.4:24392266-24392285 | MS.gene46346:CDS | 50.0% | |
| CGGTTCTCAAACAGCCATGT+AGG | + | chr8.4:24392986-24393005 | None:intergenic | 50.0% | |
| GAGTGAGCTCTTTCCATGAG+AGG | + | chr8.4:24393742-24393761 | None:intergenic | 50.0% | |
| GCAGGGGCAACTTTATGCAA+AGG | - | chr8.4:24391620-24391639 | MS.gene46346:CDS | 50.0% | |
| GCCTTGAAATGGCTATGGCT+AGG | - | chr8.4:24391136-24391155 | MS.gene46346:CDS | 50.0% | |
| GCTATGGCTAGGAATGAGAG+TGG | - | chr8.4:24391147-24391166 | MS.gene46346:CDS | 50.0% | |
| GGATTGGGGACACTATTAGC+AGG | - | chr8.4:24391653-24391672 | MS.gene46346:CDS | 50.0% | |
| TCTTTGAGTGGCTCGATGAC+AGG | + | chr8.4:24393266-24393285 | None:intergenic | 50.0% | |
| TGACGGCCTTGAAATGGCTA+TGG | - | chr8.4:24391131-24391150 | MS.gene46346:CDS | 50.0% | |
| TGAGCTCTTTCCATGAGAGG+CGG | + | chr8.4:24393739-24393758 | None:intergenic | 50.0% | |
| TGTGGAAACGGTGGCAAAAC+TGG | - | chr8.4:24393947-24393966 | MS.gene46346:CDS | 50.0% | |
| TTGCATAAGGCTAGCAGCAG+AGG | - | chr8.4:24393533-24393552 | MS.gene46346:CDS | 50.0% | |
| TTGGAGCCTAAGAAGAGTCG+TGG | + | chr8.4:24393681-24393700 | None:intergenic | 50.0% | |
| ! | TGGCGAGCATGTTGTTTGCT+TGG | + | chr8.4:24393710-24393729 | None:intergenic | 50.0% |
| !! | CCACCCCGTGAATTTGCTTT+TGG | - | chr8.4:24393183-24393202 | MS.gene46346:intron | 50.0% |
| !! | CTGCTGCTAGCCTTATGCAA+GGG | + | chr8.4:24393533-24393552 | None:intergenic | 50.0% |
| !! | TCTGCTGCTAGCCTTATGCA+AGG | + | chr8.4:24393534-24393553 | None:intergenic | 50.0% |
| !!! | GTGGTTTTCGAGTTCACTGC+AGG | - | chr8.4:24391402-24391421 | MS.gene46346:CDS | 50.0% |
| AAGGTTGCCCCCACTTTACG+CGG | + | chr8.4:24393319-24393338 | None:intergenic | 55.0% | |
| CTTTCCATGAGAGGCGGCTA+TGG | + | chr8.4:24393733-24393752 | None:intergenic | 55.0% | |
| ! | GTTGGGAGCCAAGGCATTCT+AGG | - | chr8.4:24392883-24392902 | MS.gene46346:CDS | 55.0% |
| ! | TGCATGCAAGTTGGGAGCCA+AGG | - | chr8.4:24392874-24392893 | MS.gene46346:CDS | 55.0% |
| !! | GCGCCGACTTCTTATGCTGT+TGG | + | chr8.4:24393583-24393602 | None:intergenic | 55.0% |
| AGGTTGCCCCCACTTTACGC+GGG | + | chr8.4:24393318-24393337 | None:intergenic | 60.0% | |
| GACCGGTACGGCAGCAATTG+TGG | - | chr8.4:24391507-24391526 | MS.gene46346:CDS | 60.0% | |
| GGCTGTCATGACTGTCGTCG+TGG | - | chr8.4:24391383-24391402 | MS.gene46346:CDS | 60.0% | |
| TCCATGAGAGGCGGCTATGG+TGG | + | chr8.4:24393730-24393749 | None:intergenic | 60.0% | |
| GCCACCATAGCCGCCTCTCA+TGG | - | chr8.4:24393726-24393745 | MS.gene46346:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 24391114 | 24394112 | 24391114 | ID=MS.gene46346 |
| chr8.4 | mRNA | 24391114 | 24394112 | 24391114 | ID=MS.gene46346.t1;Parent=MS.gene46346 |
| chr8.4 | exon | 24393803 | 24394112 | 24393803 | ID=MS.gene46346.t1.exon1;Parent=MS.gene46346.t1 |
| chr8.4 | CDS | 24393803 | 24394112 | 24393803 | ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1 |
| chr8.4 | exon | 24393462 | 24393602 | 24393462 | ID=MS.gene46346.t1.exon2;Parent=MS.gene46346.t1 |
| chr8.4 | CDS | 24393462 | 24393602 | 24393462 | ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1 |
| chr8.4 | exon | 24392828 | 24393100 | 24392828 | ID=MS.gene46346.t1.exon3;Parent=MS.gene46346.t1 |
| chr8.4 | CDS | 24392828 | 24393100 | 24392828 | ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1 |
| chr8.4 | exon | 24392618 | 24392739 | 24392618 | ID=MS.gene46346.t1.exon4;Parent=MS.gene46346.t1 |
| chr8.4 | CDS | 24392618 | 24392739 | 24392618 | ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1 |
| chr8.4 | exon | 24392213 | 24392356 | 24392213 | ID=MS.gene46346.t1.exon5;Parent=MS.gene46346.t1 |
| chr8.4 | CDS | 24392213 | 24392356 | 24392213 | ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1 |
| chr8.4 | exon | 24391114 | 24391728 | 24391114 | ID=MS.gene46346.t1.exon6;Parent=MS.gene46346.t1 |
| chr8.4 | CDS | 24391114 | 24391728 | 24391114 | ID=cds.MS.gene46346.t1;Parent=MS.gene46346.t1 |
| Gene Sequence |
| Protein sequence |
