AlfalfaGEDB | MS.gene022247

M. sativa cultivar XinJiangDaYe / MS.gene022247

KEGG: K00423
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0008150 GO:0008152 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114 GO:0110165
PFAM: PF00394.25 PF07731.17 PF07732.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022247.t1	RHN68841.1	95.9	566	22	1	1	565	1	566	0.00E+00	1147.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022247.t1	Q40588	69.1	570	168	3	1	564	1	568	3.8e-243	842.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022247.t1	A0A396IVX4	95.9	566	22	1	1	565	1	566	0.0e+00	1147.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene004011	MS.gene022247	PPI
MS.gene022247	MS.gene021147	PPI
MS.gene022247	MS.gene30569	PPI
MS.gene022247	MS.gene059697	PPI
MS.gene022247	MS.gene41139	PPI
MS.gene022247	MS.gene059694	PPI
MS.gene022247	MS.gene70354	PPI
MS.gene022247	MS.gene030762	PPI
MS.gene030765	MS.gene022247	PPI
MS.gene28968	MS.gene022247	PPI

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022247.t1	MTR_3g078700	91.166	566	22	2	1	565	1	539	0.0	1060
MS.gene022247.t1	MTR_3g078740	82.852	589	76	3	1	565	1	588	0.0	1023
MS.gene022247.t1	MTR_3g078730	81.770	565	76	1	1	565	1	538	0.0	943
MS.gene022247.t1	MTR_8g091390	49.818	550	269	5	17	564	26	570	0.0	561
MS.gene022247.t1	MTR_5g069680	33.511	564	321	20	4	545	6	537	7.61e-72	240
MS.gene022247.t1	MTR_7g058690	32.230	574	320	16	7	542	14	556	1.17e-71	240
MS.gene022247.t1	MTR_5g083360	30.465	581	331	18	1	544	1	545	5.56e-71	238
MS.gene022247.t1	MTR_5g081810	32.642	530	296	17	40	544	14	507	1.43e-70	236
MS.gene022247.t1	MTR_5g020620	31.634	569	327	19	1	544	8	539	3.15e-70	236
MS.gene022247.t1	MTR_7g060460	33.043	575	322	20	2	540	8	555	1.41e-69	234

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022247.t1	AT5G21105	66.786	560	182	2	9	564	19	578	0.0	800
MS.gene022247.t1	AT5G21100	63.587	552	193	5	17	564	16	563	0.0	738
MS.gene022247.t1	AT5G21105	65.720	528	177	2	1	524	11	538	0.0	737
MS.gene022247.t1	AT4G39830	48.866	573	270	9	7	564	16	580	0.0	572
MS.gene022247.t1	AT5G21105	67.109	377	123	1	189	564	11	387	0.0	549
MS.gene022247.t1	AT4G39830	49.084	491	229	8	87	564	3	485	2.14e-168	487
MS.gene022247.t1	AT4G39830	49.080	489	228	8	89	564	3	483	1.01e-167	485
MS.gene022247.t1	AT4G39830	47.047	491	226	9	87	564	3	472	4.78e-155	452
MS.gene022247.t1	AT5G05390	29.604	581	334	17	1	544	1	543	1.14e-70	237
MS.gene022247.t1	AT5G58910	32.310	554	305	20	24	544	29	545	7.10e-67	227

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

Find 144 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATCATTTCCAAAA+TGG	0.220018	3.3:+66649343	MS.gene022247:CDS
AAAATGCAAACCAGTTAAAT+GGG	0.447011	3.3:+66649657	MS.gene022247:CDS
AAACAAATCATTTCCAAAAT+GGG	0.418944	3.3:+66649344	MS.gene022247:CDS
AAACGTGTAAACACCGTTAC+CGG	0.380846	3.3:-66649603	None:intergenic
AAATCGGTAGTTTCACTAAA+TGG	0.163317	3.3:+66649426	MS.gene022247:CDS
AACTCACCATCATAATGAAA+TGG	0.432896	3.3:-66645122	None:intergenic
AATACAGATTCAAAGTTGAC+AGG	0.425137	3.3:+66644750	MS.gene022247:CDS
AATCGGTAGTTTCACTAAAT+GGG	0.438520	3.3:+66649427	MS.gene022247:CDS
AATGGAATGCCCAAACACCA+GGG	0.708938	3.3:-66649862	None:intergenic
AATGGCTCTCTTTGTTCCTT+TGG	0.323053	3.3:-66645104	None:intergenic

Showing 1 to 10 of 144 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCGGTAGTTTCACTAAA+TGG	+	chr3.3:66649426-66649445	MS.gene022247:CDS	30.0%
AACAAAAGAAAAACCATTGC+TGG	-	chr3.3:66644899-66644918	None:intergenic	30.0%
AACTCACCATCATAATGAAA+TGG	-	chr3.3:66645125-66645144	None:intergenic	30.0%
AAGACCCTAAAAAAAACTAC+TGG	+	chr3.3:66649171-66649190	MS.gene022247:CDS	30.0%
AATACAGATTCAAAGTTGAC+AGG	+	chr3.3:66644750-66644769	MS.gene022247:CDS	30.0%
AATCGGTAGTTTCACTAAAT+GGG	+	chr3.3:66649427-66649446	MS.gene022247:CDS	30.0%
AATCTAAATGCATGATGCTT+TGG	+	chr3.3:66648894-66648913	MS.gene022247:intron	30.0%
AATCTGACTATCCAATTATG+GGG	+	chr3.3:66648726-66648745	MS.gene022247:intron	30.0%
AATTAATCAACATGTAGCAG+TGG	-	chr3.3:66644837-66644856	None:intergenic	30.0%
AATTGTCGACATAATAAGGA+AGG	+	chr3.3:66647521-66647540	MS.gene022247:intron	30.0%

Showing 1 to 10 of 387 entries

Previous1 2 3 4 5…39Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	66644312	66649994	66644312	ID=MS.gene022247
chr3.3	mRNA	66644312	66649994	66644312	ID=MS.gene022247.t1;Parent=MS.gene022247
chr3.3	exon	66644312	66644572	66644312	ID=MS.gene022247.t1.exon1;Parent=MS.gene022247.t1
chr3.3	CDS	66644312	66644572	66644312	ID=cds.MS.gene022247.t1;Parent=MS.gene022247.t1
chr3.3	exon	66644680	66644772	66644680	ID=MS.gene022247.t1.exon2;Parent=MS.gene022247.t1
chr3.3	CDS	66644680	66644772	66644680	ID=cds.MS.gene022247.t1;Parent=MS.gene022247.t1
chr3.3	exon	66645026	66645238	66645026	ID=MS.gene022247.t1.exon3;Parent=MS.gene022247.t1
chr3.3	CDS	66645026	66645238	66645026	ID=cds.MS.gene022247.t1;Parent=MS.gene022247.t1
chr3.3	exon	66647048	66647242	66647048	ID=MS.gene022247.t1.exon4;Parent=MS.gene022247.t1
chr3.3	CDS	66647048	66647242	66647048	ID=cds.MS.gene022247.t1;Parent=MS.gene022247.t1
chr3.3	exon	66649059	66649994	66649059	ID=MS.gene022247.t1.exon5;Parent=MS.gene022247.t1
chr3.3	CDS	66649059	66649994	66649059	ID=cds.MS.gene022247.t1;Parent=MS.gene022247.t1

Gene Sequence

>MS.gene022247

ATGAGTTTGCTGAAAGCAGTTTTTGTTTGGTGCATATGGTTAGGGTTATTTGAGTTATCATTAGCAAAAGTGAGACACTACAAGTTTGATGTTGAATACATATACAAAAAGCCAGATTGTGTGGAGCATGTTGTGATGGGAATCAATGGCCAGTTTCCAGGCCCAACTATTAAAGCTGAAGTTAATGACACCCTTGTCATTGACCTCACCAACAAGCTCCATACAGAAGGAACTGTTATTCACTGGCATGGAATCAGACAGGTAAATTCTTAGTTCTAGTGGTTTGATCATGAACCAAAGTACCAGTCTAGTTATAATTAAATATTACATTAATTCTTTGTTGTTAATTACTGTAAAAATGTTTGCAGTTTGGAACTCCTTGGGCTGATGGAACTGCTGCAATCTCTCAGTGTGCTATAAATCCAGGAGAAACTTTTCAATACAGATTCAAAGTTGACAGGGTAATTAATTATTAATTAATTAAAATTTTAGTTCTCTGTTCTATGACCTCTTTTTCTGTTTCCACTGCTACATGTTGATTAATTTGATCACATTTTTGACCCCAAGTGGCATATATGTCCATGCCAGCAATGGTTTTTCTTTTGTTTTTTTGATTACATATTTTATTTTATTTTATTTTATAATACTATATAATATAATTAGAGCTAGGTACATATATATAATATTAACTGGTTGGTGTTAAATATGGTGCAGCCTGGTACATATTTCTATCATGGACATTTTGGTATGCAAAGAGCAGCAGGGCTGTATGGTTCTCTAATAGTGGATTTACCAAAGGAACAAAGAGAGCCATTTCATTATGATGGTGAGTTTAATCTGCTCCTTAGTGATCTGTGGCACACAAGCTCACATGAACAAGAGGTTGGCCTCTCTTCAGCCCCAATGAGATGGATTGGTGAACCACAGGTATACTTTCAACTTTTCATATATACAAAAATATCATGATCATTCAATTTTTATTTATTTTATTTTATCAAATATTAAAAACAGCTATGTGTACAATAAACGTTTTTACGTAAAAAAATAATAAAAATTTAAAATAATAATAAAAATATAATATAATTTAACTCGTATACATTGTCCTTGTAAAGAAACTTTTACACTTTCAATCAATAACAATCGTTAGATCTTTAAAAATGTTTGACATTTCTCATTCTTGCATAAGTTATGCTTGAATGTGTTTTTTCTTGTACTCTTAACTAGTTTTAAAGTTGTCATGATCGGTTGAATGTGTAAAACTTCTTAAACTAACATTGAACAAAAATTGAACTCTTAAAATAACTTACTCGTTATACATCTTTAATTTCTTCATTGTAAAATGTTACTTATAAAAAATAAAATTATTTGATATCTAGAACATTTTAAAGCATAATAACTTTTGGCTTATGAATATGATTACGCTAAAGAATTTCATAACTAATTAACATAAGACTTCTTCTCACTATACTTTTCATCATCACCAATGATACTCTTTATTTGTGACATCCACCATATGAGCATTAGTGCTTTCCTTTTTCATATGAATATGATGTCTTTGATCTGTAAACCAGACAATAAAATTCTTGAAAGAAAACAACTCACACTCATGTGGCATAGAAATAAAAATTGAAAATTGGGAAAGAATAAAGAGTCATATTCCCATTCACCTAATACCTAATAATTCCTAAGAGCATCCACAATGGTAGTTTCCTAACAAGGACTCCTTAAATGGACCCCACGTGACACATCACTTATTTATGATTTTTTAATAAAAGTACCTATTAAGGACTCAATGACTCCAATGACAATACACTAACAAAGACTCCAATGAAAAGTACTTAAATATGTCCCACTATCTTTATATATTAAACAAAAATAATTTATCTATTACTCATTTTTACAAGTGGGACCAAGTAGTACACATTTTATTACTTCTTTATGCAAGTGGGACCAAGTAGTACACATTTTATTACTTTTTTAAACGTGGGACCCGTTAGTTACCCAGGAGAGAGAGGGTCCTTATATAGTTGCCCGTTCTTTAACGGGGACTCAATTTTTCTTCCTCCAATGGAGGGTCCTTAACAGGGAGTGGTCCTTGTTAAGTAAAGACCCCATTGGAGATGCTCTAATAGTGGCATAGAAAACCTTGCAACTAGGTGGCCCATTTCATCAAATCATCGTTGGAATTTTTCTATAATGGTGAATTCTCGCAGTTGCCACCCCCACTTGTCAATTTTTTTTTTCAACAACACATCTTTCAAGACAATAGAAATATGAACTGGTATTCTTAAAAAAAAAATATGAACTGGTACAAATTTTTCTACTTTTTTTTTGGACAAATTTTTCTACTTGTATTATATTATTTTATCTTTTTTTTATAAAAAAATTGTAAGTTAATATGAACTGGTACAAATTTTTTCTTCTTATTTTATCCTTTAAATTTTAATCAAGACAAAAAATTTCAAAAATAAAATAAAGGAAAGCATCGTATTACAGTATAAATATTTAAAATTATAATTTAATCATGGACAGTACCAAGAAAGATAATGGAATAGTATTATTTTTCATTCTTTTGGTAAATGTACAATTGGCCACGCGGTGTTAGCTTTATTTTGACGCAAAAAGGGAAAGACAATCAGAAGAAACGAACAAAAGAAACAGTGTATTTTTCTTAAAATAATTGCATGCGTAACCTTTTATGAATGATAATATAGTATTTGTTTATTTGTTTTTTAGAGCTTGCTCATCAATGGACGAGGACAGTTCAATTGTTCCCTAGCAGCTAAATATGGGAGCACCAACCTACAACAATGCAATTTGAAAGGTGGTGAAGAATGTGCACCCCAGATTCTTCATGTGGAGCCAAAAAAGACCTACAGAATAAGGATTGCTAGTACTACGTCCTTGGCTTCTCTCAACTTGGCCATTTCAGTGAGTTTTCTCCTAGCTATGACCCACTACATATATGATATATGTTTGCATTATTTCAATATATATATCGTTGTATTTCTTTCTTATTAATTTATATTATTCTGTCATATTCCAATTAGTTTGTGTGTGTCTATTTTGCATATCATTATTAGGGTTATATCATTATTGCTTCCACATCCAAATATATGCTCATCTCAATTATCACCATTTAGGTAGCTGTCTCATAATTAAGATAGTAGTACTTCATTTCCTTGTTCCCACCAAATAAAAAAGGAATCAATTGTCGACATAATAAGGAAGGTTTACTTTTAAGAGGAAATTCCGGAGATTAATAGTCTAATTCATGGAAAACGAATGAAATAATTTAGGAACAGTAGGTGTGTGTTTAAAGCAGCGTAAGAAAAACTTCACTAATAGGTCAAAGAAGTTGGAAAAAATATCTTTGAAAAAATGTTTTAGATATGGAAATCTACGACTTCGTGTGTCCAGCTCAAGTAGCCGTTTAATGTGCAGAATCGTAGGAATTAAAAATTAAGGTTTTGCGTGTCTTAAAACACATGTTAAATACTTTGTAAGAAAAAAACTTTAACTTCAATAGGAACTCCATTTATTCTTTTTTAAATATCATAGTTTTTTTTTGGTGGCCAGGGTTCGAACCCGAACCTTGTATATATTATGCATTGTCATTACCAACTGAGCTTAACTCACAAGGACTAAATATTGTAGTTTGACTATTTTACATTATTCATATCTTATTTTAATGATATTATTTTATAAAGCCAAATGTTAGTATAGGAGATGTTCAATTAGTTGTTATATTGGAGGGGGATTCTGATTGATGTACAAATGTTATAAACACTCAGAATTGTCGCATCAATTGTTTTGGTTAAAAATCATTAATTAATATGGCAATTCTGATTGTTTTGATTGGTTGTATTTAAAAAAACAAACATATACATTCAAATAAATGAAGCGGTACCAACAAAAAATAATTCTATAAAGCTGAAAAAACACTAGTCAATTAACCTTTAAATGTGATAATGATGAACGGAGATTTGAATCACATGAGTGGGGATTAGTGAGTTGTCAAACGTGCGACAAAAAATAGTAGATCCAAACCACTTGAAAAAGACGAAGGACCACGTTATGGAGTCCTCGTATAAAATAAGGAAAAGAAAACAACGTTAACTGAGATGCATAGTGATTGGTCGGAGTTGGCATGTGAAACACTGGTTTCTTGATAACTAGTGCCAAATTTATGTCTATAGAGGGAATCACATCTTGCAGGAATGAAATCTCCCCATTTTATCATACATGCATGCACTTTCATTCAAATCAACAACTGTATTACATAAGTGTACAAAATTCAAATTCGAATTAAATATTGTTTCATTGGTTGGACTCAATTGATTCATGAACTTCACGTTAAATTATTTAGGAAAAGTTGAATTTAAATCTTGGTTGGTTGTTAGATTTTACTTACAATCTGACTATCCAATTATGGGGACCAAATTGGATTGGGTGTGCTCAAAGCACCATGGTTTGTTAGATCAACATGAGACAATATGTTTTTCAACTTTACCAAATAACATTTTTAATAAAACTTAAAATAGTGATTGTTTGATCTTGATCTAACGACCAAGATATTCTAAATCTAAATGCATGATGCTTTGGGAGTAGTCACTGATTTTGATAAATTTTCACATAAAACCTACTGCTGATTATTGCATTTCCCCATATCATTCCTTGAATTGCACCATAGATTGATTCATTATTTCATGAAATAACATTGCCCCATAATTTCTGTTTGTTTCAGAATCACAAACTTATTGTGGTGGAAGCAGATGGAAACTACGTGCACCCATTCGCAGTTGATGACATCGACATCTACTCAGGTGAAACCTACTCAGTACTCCTTACAACAGACCAAGACCCTAAAAAAAACTACTGGCTTTCAATTGGTGTTAGAGGCAGAAAACCAGGCACACCACAAGCCCTAACAATCCTTAACTACAAAACAATCTCTGCCTCAGTTTTTCCAACATTACCACCACCAGTCACACCCTTATGGAACGATACCGAACACAGCAAAGCATTCACAAAACAAATCATTTCCAAAATGGGAACTCCACAGCCACCGAAATCCTCACACCGCACGATTCTCCTCCTCAATACACAAAACAAAATCGGTAGTTTCACTAAATGGGCTATTAACAATGTTTCATTAACATTGCCAACCACACCTTACTTAGGATCAATCAAATTTAAGCTAAACAATACATTTGATAGAAATCCACCACCAGAGAGATTTCCAATGGATTATGACATATTTAAAAATCCAGTTAATCCAAATACAACTACCGGTAACGGTGTTTACACGTTTCAGTTGAATGAGGTTGTTGATGTGATACTACAAAATGCAAACCAGTTAAATGGGAATGGTAGTGAAATTCATCCATGGCATTTGCATGGACATGATTTTTGGGTTTTGGGATATGGTGAAGGGAGATTTAGACCAGGTGTTGATGAGAAAAGTTTCAATTTGACACGTGCACCTTTGAGGAACACTGCAGTTATATTTCCATATGGTTGGACTGCATTAAGGTTTAAGGCAGATAACCCTGGTGTTTGGGCATTCCATTGTCACATTGAACCACATTTGCATATGGGAATGGGTGTTATTTTTGCTGAGGCTGTTCATAAAGTTAGGAACATACCTAAAGAAGCTCTTAAGTGTGGTGCTACAGCCTAG

Protein sequence

>MS.gene022247.t1

MSLLKAVFVWCIWLGLFELSLAKVRHYKFDVEYIYKKPDCVEHVVMGINGQFPGPTIKAEVNDTLVIDLTNKLHTEGTVIHWHGIRQFGTPWADGTAAISQCAINPGETFQYRFKVDRPGTYFYHGHFGMQRAAGLYGSLIVDLPKEQREPFHYDGEFNLLLSDLWHTSSHEQEVGLSSAPMRWIGEPQSLLINGRGQFNCSLAAKYGSTNLQQCNLKGGEECAPQILHVEPKKTYRIRIASTTSLASLNLAISNHKLIVVEADGNYVHPFAVDDIDIYSGETYSVLLTTDQDPKKNYWLSIGVRGRKPGTPQALTILNYKTISASVFPTLPPPVTPLWNDTEHSKAFTKQIISKMGTPQPPKSSHRTILLLNTQNKIGSFTKWAINNVSLTLPTTPYLGSIKFKLNNTFDRNPPPERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGEGRFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIPKEALKCGATA