AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030765.t1 MTR_8g091390 98.440 577 8 1 1 576 1 577 0.0 1179
MS.gene030765.t1 MTR_3g078740 48.168 573 263 9 31 573 23 591 0.0 553
MS.gene030765.t1 MTR_3g078730 49.030 567 254 8 13 573 5 542 0.0 552
MS.gene030765.t1 MTR_3g078700 47.711 568 263 6 6 569 1 538 0.0 545
MS.gene030765.t1 MTR_5g020600 34.542 579 322 20 1 552 1 549 1.49e-87 282
MS.gene030765.t1 MTR_5g020620 33.451 565 326 14 7 549 3 539 4.76e-85 275
MS.gene030765.t1 MTR_5g069680 33.333 564 315 18 13 549 7 536 1.28e-78 258
MS.gene030765.t1 MTR_7g458880 31.641 591 329 21 14 561 9 567 1.40e-78 259
MS.gene030765.t1 MTR_5g083360 31.980 591 333 20 15 566 7 567 2.70e-77 255
MS.gene030765.t1 MTR_5g081810 34.160 524 292 16 49 549 14 507 3.71e-77 254
MS.gene030765.t1 MTR_7g058690 32.143 588 330 22 14 561 9 567 5.02e-77 255
MS.gene030765.t1 MTR_3g462760 32.965 543 311 16 30 549 22 534 6.13e-77 254
MS.gene030765.t1 MTR_7g060460 32.107 598 338 21 4 562 1 569 9.84e-77 254
MS.gene030765.t1 MTR_7g062250 33.045 578 309 22 34 566 34 578 1.99e-74 248
MS.gene030765.t1 MTR_2g008330 32.069 580 332 17 3 549 7 557 2.97e-74 247
MS.gene030765.t1 MTR_8g027375 31.760 551 329 15 22 549 23 549 6.34e-72 241
MS.gene030765.t1 MTR_7g062310 30.995 613 335 23 2 560 6 584 9.99e-72 241
MS.gene030765.t1 MTR_5g073210 31.624 585 324 20 17 563 5 551 3.07e-71 239
MS.gene030765.t1 MTR_3g101640 32.286 573 316 20 15 549 11 549 3.12e-69 234
MS.gene030765.t1 MTR_4g064530 31.167 600 339 23 1 560 6 571 7.31e-69 233
MS.gene030765.t1 MTR_7g065980 29.592 588 339 18 18 565 10 562 1.63e-66 226
MS.gene030765.t1 MTR_3g101635 32.035 565 315 21 21 549 13 544 2.62e-66 226
MS.gene030765.t1 MTR_3g071890 32.523 535 287 20 49 546 48 545 1.39e-65 224
MS.gene030765.t1 MTR_7g065970 30.360 583 323 20 15 550 3 549 1.83e-65 224
MS.gene030765.t1 MTR_4g019225 31.308 543 300 20 49 550 41 551 1.53e-63 219
MS.gene030765.t1 MTR_4g064530 30.609 575 328 22 1 535 6 549 1.26e-61 213
MS.gene030765.t1 MTR_8g479390 28.998 569 324 20 28 571 25 538 4.00e-57 201
MS.gene030765.t1 MTR_5g018270 28.622 566 327 18 28 571 25 535 2.22e-53 190
MS.gene030765.t1 MTR_4g132320 27.844 589 334 19 14 571 11 539 1.43e-52 188
MS.gene030765.t1 MTR_4g049390 27.273 572 329 14 29 571 22 535 4.37e-52 187
MS.gene030765.t1 MTR_4g048350 27.915 566 332 15 29 571 22 534 4.56e-52 187
MS.gene030765.t1 MTR_4g101650 29.813 587 350 18 8 568 1 551 5.80e-52 187
MS.gene030765.t1 MTR_3g008580 27.444 583 359 17 17 570 8 555 2.07e-51 186
MS.gene030765.t1 MTR_3g083440 28.253 584 350 18 9 570 3 539 1.16e-50 183
MS.gene030765.t1 MTR_1g026410 27.090 598 337 19 11 571 2 537 1.30e-50 183
MS.gene030765.t1 MTR_3g115050 26.050 595 345 18 10 571 6 538 1.74e-50 182
MS.gene030765.t1 MTR_3g083400 28.253 584 350 18 9 570 3 539 3.64e-50 182
MS.gene030765.t1 MTR_3g083390 28.253 584 350 18 9 570 3 539 4.15e-50 182
MS.gene030765.t1 MTR_3g083450 28.495 558 333 17 35 570 27 540 2.01e-49 180
MS.gene030765.t1 MTR_2g088080 26.678 596 347 15 8 571 1 538 2.25e-49 179
MS.gene030765.t1 MTR_3g083430 28.082 584 351 18 9 570 3 539 2.48e-49 179
MS.gene030765.t1 MTR_4g075690 26.244 583 347 18 14 571 13 537 1.85e-48 177
MS.gene030765.t1 MTR_4g083210 28.302 583 347 19 9 570 3 535 3.63e-48 176
MS.gene030765.t1 MTR_1g090707 28.015 539 324 19 52 568 42 538 4.46e-48 177
MS.gene030765.t1 MTR_7g051440 29.264 557 333 18 35 567 30 549 8.31e-48 176
MS.gene030765.t1 MTR_8g479380 26.804 582 341 19 15 570 13 535 1.69e-47 174
MS.gene030765.t1 MTR_3g083410 28.067 538 321 17 55 570 10 503 2.04e-46 171
MS.gene030765.t1 MTR_4g083190 25.784 574 370 14 14 570 7 541 3.92e-45 168
MS.gene030765.t1 MTR_4g075690 25.971 489 291 13 14 485 13 447 5.16e-39 149
MS.gene030765.t1 MTR_2g088080 25.969 516 292 14 87 571 1 457 2.05e-37 144
MS.gene030765.t1 MTR_4g015120 41.615 161 90 2 389 549 379 535 3.22e-32 131
MS.gene030765.t1 MTR_3g079660 50.000 96 47 1 481 575 5 100 3.55e-30 114
MS.gene030765.t1 MTR_5g081790 40.385 156 84 3 389 541 283 432 3.91e-26 111
MS.gene030765.t1 MTR_5g081790 37.952 166 89 6 16 169 5 168 8.23e-22 98.6
MS.gene030765.t1 MTR_2g009230 44.262 61 32 1 139 197 1 61 4.92e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030765.t1 AT4G39830 66.254 566 182 4 14 570 16 581 0.0 820
MS.gene030765.t1 AT4G39830 67.562 484 148 4 96 570 3 486 0.0 705
MS.gene030765.t1 AT4G39830 67.495 483 148 4 97 570 2 484 0.0 703
MS.gene030765.t1 AT4G39830 65.289 484 146 5 96 570 3 473 0.0 669
MS.gene030765.t1 AT5G21105 49.733 561 273 4 20 573 24 582 0.0 574
MS.gene030765.t1 AT5G21100 48.468 555 276 6 26 573 16 567 0.0 553
MS.gene030765.t1 AT5G21105 48.084 522 262 4 15 529 19 538 1.75e-175 508
MS.gene030765.t1 AT5G21105 48.429 382 190 3 197 573 12 391 2.56e-123 369
MS.gene030765.t1 AT5G03260 34.532 556 318 15 14 549 6 535 1.44e-87 282
MS.gene030765.t1 AT5G58910 33.157 567 325 17 12 549 4 545 2.74e-84 273
MS.gene030765.t1 AT5G58910 33.157 567 324 18 12 549 4 544 4.15e-83 270
MS.gene030765.t1 AT2G38080 33.635 553 326 15 17 549 5 536 5.40e-80 262
MS.gene030765.t1 AT1G18140 31.615 582 322 19 27 564 22 571 3.27e-78 258
MS.gene030765.t1 AT5G05390 32.099 567 320 19 16 549 9 543 1.77e-77 256
MS.gene030765.t1 AT5G01050 30.862 580 331 21 20 561 13 560 9.87e-75 249
MS.gene030765.t1 AT5G60020 32.007 578 322 20 11 545 2 551 1.17e-74 248
MS.gene030765.t1 AT5G09360 33.507 576 316 23 19 564 21 559 2.42e-74 247
MS.gene030765.t1 AT2G29130 31.570 567 325 19 14 545 9 547 1.33e-73 246
MS.gene030765.t1 AT5G58910 33.080 526 295 17 49 549 8 501 2.51e-73 243
MS.gene030765.t1 AT2G46570 30.756 569 330 17 13 549 11 547 1.49e-72 243
MS.gene030765.t1 AT5G48100 32.642 579 324 26 16 561 5 550 7.10e-71 238
MS.gene030765.t1 AT5G01190 32.264 561 326 15 14 549 5 536 5.53e-70 236
MS.gene030765.t1 AT5G60020 32.222 540 295 20 49 545 8 519 1.24e-69 234
MS.gene030765.t1 AT5G01040 30.412 582 329 23 20 561 13 558 2.03e-68 232
MS.gene030765.t1 AT5G60020 31.495 562 314 20 11 529 2 535 2.05e-67 228
MS.gene030765.t1 AT3G09220 30.373 563 334 18 18 549 10 545 3.45e-67 228
MS.gene030765.t1 AT5G07130 29.730 592 343 20 19 566 7 569 1.85e-66 226
MS.gene030765.t1 AT5G01190 33.205 521 294 15 54 549 31 522 2.98e-66 225
MS.gene030765.t1 AT2G30210 31.716 536 301 19 49 549 43 548 1.18e-65 224
MS.gene030765.t1 AT2G40370 30.756 582 326 20 14 549 8 558 5.57e-64 220
MS.gene030765.t1 AT1G75790 29.302 587 335 21 15 570 8 545 1.80e-58 204
MS.gene030765.t1 AT4G12420 31.159 552 324 19 13 544 5 520 7.87e-58 204
MS.gene030765.t1 AT4G12420 31.159 552 324 19 13 544 5 520 7.87e-58 204
MS.gene030765.t1 AT5G66920 27.482 564 338 15 28 571 31 543 3.06e-56 198
MS.gene030765.t1 AT2G23630 29.110 584 320 21 18 570 21 541 2.92e-55 196
MS.gene030765.t1 AT4G22010 27.979 579 341 17 17 571 9 535 3.42e-55 195
MS.gene030765.t1 AT2G23630 29.110 584 320 21 18 570 16 536 4.28e-55 195
MS.gene030765.t1 AT2G46570 29.796 490 281 16 92 549 4 462 6.52e-54 191
MS.gene030765.t1 AT1G21850 28.302 583 335 20 14 571 11 535 1.29e-53 191
MS.gene030765.t1 AT1G55570 27.863 585 361 15 8 571 1 545 1.60e-52 188
MS.gene030765.t1 AT4G37160 27.692 585 340 19 13 570 10 538 4.79e-51 184
MS.gene030765.t1 AT1G76160 26.884 584 341 19 15 571 11 535 7.18e-51 184
MS.gene030765.t1 AT1G21860 27.190 548 325 16 16 544 11 503 6.72e-50 181
MS.gene030765.t1 AT5G07130 28.880 509 292 18 100 566 4 484 3.73e-49 177
MS.gene030765.t1 AT5G07130 28.880 509 292 18 100 566 4 484 3.73e-49 177
MS.gene030765.t1 AT3G09220 29.810 473 275 17 108 549 2 448 6.81e-48 174
MS.gene030765.t1 AT4G28090 27.818 550 309 19 23 544 18 507 2.33e-47 174
MS.gene030765.t1 AT3G13390 27.046 562 339 16 35 571 29 544 2.57e-46 171
MS.gene030765.t1 AT1G41830 25.000 584 353 17 14 571 12 536 4.20e-46 171
MS.gene030765.t1 AT5G48450 27.076 554 347 14 8 544 1 514 6.80e-46 171
MS.gene030765.t1 AT5G48450 27.076 554 347 14 8 544 1 514 1.51e-45 170
MS.gene030765.t1 AT4G25240 28.376 585 349 20 15 570 11 554 3.87e-45 169
MS.gene030765.t1 AT4G25240 28.376 585 349 20 15 570 11 554 3.87e-45 169
MS.gene030765.t1 AT5G51480 27.321 560 341 18 36 567 30 551 1.10e-44 167
MS.gene030765.t1 AT3G13400 26.486 555 352 15 35 572 28 543 2.73e-44 166
MS.gene030765.t1 AT3G13400 26.486 555 352 15 35 572 28 543 2.73e-44 166
MS.gene030765.t1 AT4G38420 25.129 581 358 18 16 569 12 542 1.79e-39 152
MS.gene030765.t1 AT1G55560 26.834 559 343 17 36 572 28 542 1.19e-37 147
MS.gene030765.t1 AT4G37160 27.273 495 283 17 13 485 10 449 1.23e-35 139
MS.gene030765.t1 AT4G38420 25.528 521 316 17 16 514 12 482 1.37e-33 134
MS.gene030765.t1 AT4G38420 25.610 492 295 16 16 485 12 454 3.89e-31 126

Find 135 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGTTTCTTTCTAATTC+TGG 0.152360 4.3:+9814204 MS.gene030765:CDS
AAACTTGTTATAACCATTAA+TGG 0.170163 4.3:+9814310 MS.gene030765:CDS
TCCTGGAGTCTTTCCATTAA+TGG 0.173819 4.3:-9814323 None:intergenic
TGAAATTGCTTGTTTAATTA+TGG 0.174792 4.3:-9817026 None:intergenic
AATGAATGATTACCTCTATT+TGG 0.179597 4.3:-9815429 None:intergenic
AAACATAGAAACAATAATTT+TGG 0.223988 4.3:-9814190 None:intergenic
GATCGGATAATCCTGGTGTT+TGG 0.257745 4.3:+9816875 MS.gene030765:CDS
CCTCAGTCACTTCTGATTCA+TGG 0.264081 4.3:+9815250 MS.gene030765:intron
CTTCTAGCAATGGAATTTAT+AGG 0.273291 4.3:+9816623 MS.gene030765:CDS
GGCACAGTATTCTTCATAAT+GGG 0.282501 4.3:-9816817 None:intergenic
GGCGACCTCATTGGATGGTT+TGG 0.294439 4.3:-9816277 None:intergenic
CAAAGGGAAGCAGGAGTATA+TGG 0.305522 4.3:+9814962 MS.gene030765:CDS
GAGGTTTGATTGTGTAATTT+TGG 0.312038 4.3:-9816378 None:intergenic
ACAAGTTTCTTATAACAATC+AGG 0.314861 4.3:-9814295 None:intergenic
CTGGTGTTAGACATTATAAA+TGG 0.319055 4.3:+9814248 MS.gene030765:CDS
TATAGAGTCTCATTTCTATA+TGG 0.319868 4.3:+9816912 MS.gene030765:CDS
ATCGGATAATCCTGGTGTTT+GGG 0.329948 4.3:+9816876 MS.gene030765:CDS
CATTTGGTTGGACTGCTTTG+AGG 0.330733 4.3:+9816848 MS.gene030765:CDS
CTATCAAAGTCATAAGAAAA+AGG 0.331498 4.3:-9815016 None:intergenic
ATTGGAACTCCTTGGTTTGA+TGG 0.340104 4.3:+9814568 MS.gene030765:CDS
TGCGAAAAGGGAGAGCATTC+AGG 0.359438 4.3:-9815337 None:intergenic
GCGACCTCATTGGATGGTTT+GGG 0.364061 4.3:-9816276 None:intergenic
GGCAAAAGCAAAGGCTTCTT+AGG 0.366890 4.3:+9817003 MS.gene030765:CDS
TGGCACAGTATTCTTCATAA+TGG 0.366973 4.3:-9816818 None:intergenic
TTTATCGATTTGTTGTTGAT+AGG 0.375099 4.3:+9814638 MS.gene030765:CDS
AGCCATCAGGTGGAGGTGTT+TGG 0.375855 4.3:-9816549 None:intergenic
CTTTAAGTGCAACAAGATAA+GGG 0.376250 4.3:-9816504 None:intergenic
TACCTTTATCATGCTCACTA+TGG 0.386828 4.3:+9814935 MS.gene030765:CDS
GTGATCCAGTAGTTTCTTGA+TGG 0.389887 4.3:-9816193 None:intergenic
TTCCATAGTGAGCATGATAA+AGG 0.395211 4.3:-9814937 None:intergenic
TTAGCACCAAGCTTACTTGC+TGG 0.401503 4.3:+9815295 MS.gene030765:CDS
GGGAGGTGAAGTATGATTAT+AGG 0.405545 4.3:+9814269 MS.gene030765:CDS
TCTTTAAGTGCAACAAGATA+AGG 0.407309 4.3:-9816505 None:intergenic
GCACTTAAAGAGAATATAAC+TGG 0.408038 4.3:+9816517 MS.gene030765:CDS
ATTGTTCATAAGTACTCTTA+TGG 0.412906 4.3:-9815063 None:intergenic
AGCACTTAGTTTCCAAATAG+AGG 0.414638 4.3:+9815417 MS.gene030765:CDS
AAGAAGGAATTGAAAGGGTT+GGG 0.416848 4.3:+9816953 MS.gene030765:CDS
GGTGGAGATGGTGGAGATGT+TGG 0.421057 4.3:-9816301 None:intergenic
GAGACGACTGTTTGCGAAAA+GGG 0.423092 4.3:-9815349 None:intergenic
GTTTCTGCTGACAACATTTG+AGG 0.423513 4.3:-9816215 None:intergenic
TAACACCAGCCTCAGCTTTG+TGG 0.425338 4.3:-9814234 None:intergenic
CTTCAACAACAGTCATGTTA+TGG 0.433837 4.3:-9816078 None:intergenic
ACACATCCATGGCATCTTCA+TGG 0.435000 4.3:+9816715 MS.gene030765:CDS
CAAATGTTGTCAGCAGAAAC+AGG 0.442581 4.3:+9816218 MS.gene030765:CDS
TCCACCATCTCCACCAGCTT+GGG 0.443905 4.3:+9816309 MS.gene030765:CDS
ATAGAGTCTCATTTCTATAT+GGG 0.445190 4.3:+9816913 MS.gene030765:CDS
TAGAGATTCTTAACCACAAA+AGG 0.447645 4.3:-9816121 None:intergenic
ACTCTATCTGAGGTTGTTGG+AGG 0.454902 4.3:-9816397 None:intergenic
ATCACCCTCTTGTGCTTGAA+TGG 0.456594 4.3:-9814350 None:intergenic
CCCTCTTGTGCTTGAATGGT+AGG 0.459507 4.3:-9814346 None:intergenic
CTATAGACGGTGTTCGTCAT+TGG 0.461142 4.3:+9816446 MS.gene030765:CDS
TTATCGATTTGTTGTTGATA+GGG 0.462550 4.3:+9814639 MS.gene030765:CDS
CTCCACCATCTCCACCAGCT+TGG 0.463071 4.3:+9816308 MS.gene030765:CDS
AGGACAACCTCGCCTGGTTT+AGG 0.467102 4.3:+9816238 MS.gene030765:CDS
GAAGCTACCTTCATCCATCA+TGG 0.470885 4.3:+9816975 MS.gene030765:CDS
TTTCTATATGGGAATGGGAG+TGG 0.472301 4.3:+9816924 MS.gene030765:CDS
TGGGTACTTGGATATGGAAA+GGG 0.475912 4.3:+9816748 MS.gene030765:CDS
TCACTTCTGATTCATGGAAA+AGG 0.477199 4.3:+9815256 MS.gene030765:CDS
GAAGAAGGAATTGAAAGGGT+TGG 0.486528 4.3:+9816952 MS.gene030765:CDS
TCTCATTTCTATATGGGAAT+GGG 0.493176 4.3:+9816919 MS.gene030765:CDS
AGGTTTCGATCGGATAATCC+TGG 0.493226 4.3:+9816868 MS.gene030765:CDS
GTCTCATTTCTATATGGGAA+TGG 0.494997 4.3:+9816918 MS.gene030765:CDS
TGAGACGACTGTTTGCGAAA+AGG 0.496730 4.3:-9815350 None:intergenic
GACTGCTTTGAGGTTTCGAT+CGG 0.497349 4.3:+9816858 MS.gene030765:CDS
TATGGAATGCAAAGGGAAGC+AGG 0.500152 4.3:+9814953 MS.gene030765:CDS
ATGACTCTATCTGAGGTTGT+TGG 0.501248 4.3:-9816400 None:intergenic
TGCCAGTGCACTCATTTGGT+TGG 0.501895 4.3:+9816836 MS.gene030765:CDS
TTCAACTTCAACTAAGCCTA+AGG 0.502063 4.3:+9814161 MS.gene030765:CDS
AGTACTTATGAACAATCTGC+TGG 0.505703 4.3:+9815070 MS.gene030765:CDS
AGAAACAGGACAACCTCGCC+TGG 0.507939 4.3:+9816232 MS.gene030765:CDS
TTTGGTGAGCTTTGATTGCA+AGG 0.510484 4.3:-9816360 None:intergenic
TGTGCTTGAATGGTAGGTCC+TGG 0.510931 4.3:-9814340 None:intergenic
CCATTGGCATGGTATTAGAC+AGG 0.511230 4.3:+9814423 MS.gene030765:CDS
TTGGGTACTTGGATATGGAA+AGG 0.514165 4.3:+9816747 MS.gene030765:CDS
CAAGTTTCTTATAACAATCA+GGG 0.515748 4.3:-9814294 None:intergenic
GACTCAACATTGTCCCAAGC+TGG 0.516390 4.3:-9816322 None:intergenic
TGATCCAGTAGTTTCTTGAT+GGG 0.518958 4.3:-9816192 None:intergenic
ACTGTGCCAGTGCACTCATT+TGG 0.524117 4.3:+9816832 MS.gene030765:CDS
GATGTTGGTGGCGACCTCAT+TGG 0.527521 4.3:-9816286 None:intergenic
CAAGATAAGGGGTGTGAGGT+AGG 0.528066 4.3:-9816492 None:intergenic
CGATAAACAAAGGTGTCTCC+AGG 0.528939 4.3:-9814622 None:intergenic
CCTTCATCCATCATGGGTTG+TGG 0.536511 4.3:+9816982 MS.gene030765:CDS
TGCTCACTATGGAATGCAAA+GGG 0.536716 4.3:+9814946 MS.gene030765:CDS
CCTTGGTTTGATGGAACAGA+AGG 0.537286 4.3:+9814577 MS.gene030765:CDS
AAGACCCATCAAGAAACTAC+TGG 0.542638 4.3:+9816188 MS.gene030765:CDS
CAGAAAACCTTGCTATCCAT+TGG 0.542644 4.3:+9814407 MS.gene030765:CDS
AATTTCCACAAAGCTGAGGC+TGG 0.543418 4.3:+9814229 MS.gene030765:CDS
TTATTAAAATCATAGCCATC+AGG 0.546504 4.3:-9816562 None:intergenic
TGGTGTTAGACATTATAAAT+GGG 0.546733 4.3:+9814249 MS.gene030765:CDS
ACCATTAATGGAAAGACTCC+AGG 0.548027 4.3:+9814322 MS.gene030765:CDS
TATGACAGATTGGAACTCCT+TGG 0.549024 4.3:+9814560 MS.gene030765:intron
GGAGATGGTGGAGATGTTGG+TGG 0.552505 4.3:-9816298 None:intergenic
TACCATGCCAATGGATAGCA+AGG 0.555804 4.3:-9814414 None:intergenic
ACAAATGCTACTTCTAGCAA+TGG 0.556255 4.3:+9816613 MS.gene030765:CDS
CCACAACCCATGATGGATGA+AGG 0.564653 4.3:-9816982 None:intergenic
TTGGTGGCGACCTCATTGGA+TGG 0.568529 4.3:-9816282 None:intergenic
CAAACACCAGCAAGTAAGCT+TGG 0.572447 4.3:-9815301 None:intergenic
ATGGGTTGTGGCAAAAGCAA+AGG 0.574548 4.3:+9816994 MS.gene030765:CDS
ATGCTCACTATGGAATGCAA+AGG 0.577390 4.3:+9814945 MS.gene030765:CDS
TTGTCCCAAGCTGGTGGAGA+TGG 0.577934 4.3:-9816313 None:intergenic
TCATGTCCATGAAGATGCCA+TGG 0.579018 4.3:-9816721 None:intergenic
ACCTACCATTCAAGCACAAG+AGG 0.579718 4.3:+9814345 MS.gene030765:CDS
CAATGAAAAGCCCAAACACC+AGG 0.582233 4.3:-9816886 None:intergenic
AAATCATAGCCATCAGGTGG+AGG 0.584412 4.3:-9816556 None:intergenic
TCTCAATGTCCTATACTACC+TGG 0.584728 4.3:+9814604 MS.gene030765:CDS
CCTGTCTAATACCATGCCAA+TGG 0.585753 4.3:-9814423 None:intergenic
AAGGTGTCTCCAGGTAGTAT+AGG 0.588687 4.3:-9814613 None:intergenic
ATGACTGTTGTTGAAGCAGA+TGG 0.592854 4.3:+9816085 MS.gene030765:CDS
AACCTTGCTATCCATTGGCA+TGG 0.593705 4.3:+9814412 MS.gene030765:CDS
AAGCTACCTTCATCCATCAT+GGG 0.594823 4.3:+9816976 MS.gene030765:CDS
GTCCAACCAAATGAGTGCAC+TGG 0.595748 4.3:-9816838 None:intergenic
AAGAATCTCTACATATACTC+AGG 0.600439 4.3:+9816133 MS.gene030765:CDS
TCAACATTGTCCCAAGCTGG+TGG 0.600784 4.3:-9816319 None:intergenic
AACCAAACACCTCCACCTGA+TGG 0.600941 4.3:+9816547 MS.gene030765:CDS
AACACACAAAACACTATAGA+CGG 0.600946 4.3:+9816433 MS.gene030765:CDS
CTTGGTTTGATGGAACAGAA+GGG 0.602438 4.3:+9814578 MS.gene030765:CDS
CAAAACTATGACTCTATCTG+AGG 0.612834 4.3:-9816407 None:intergenic
TTGGTTTGATGGAACAGAAG+GGG 0.617644 4.3:+9814579 MS.gene030765:CDS
GGTGAATTTCCACAAAGCTG+AGG 0.618690 4.3:+9814225 MS.gene030765:CDS
TCCCAAGCTGGTGGAGATGG+TGG 0.622614 4.3:-9816310 None:intergenic
GCATGATAAAGGTATGTACC+AGG 0.623377 4.3:-9814926 None:intergenic
TTTAAGTGCAACAAGATAAG+GGG 0.625406 4.3:-9816503 None:intergenic
AACAACAAATCGATAAACAA+AGG 0.630677 4.3:-9814632 None:intergenic
ATAATAGTGAGACACATCCA+TGG 0.633125 4.3:+9816704 MS.gene030765:CDS
TCAACTTCAACTAAGCCTAA+GGG 0.636069 4.3:+9814162 MS.gene030765:CDS
GCACAGTATTCTTCATAATG+GGG 0.640153 4.3:-9816816 None:intergenic
TTAAAATCATAGCCATCAGG+TGG 0.640896 4.3:-9816559 None:intergenic
GCAACAAGATAAGGGGTGTG+AGG 0.654315 4.3:-9816496 None:intergenic
AAGTTTCTTATAACAATCAG+GGG 0.660671 4.3:-9814293 None:intergenic
CCTACCATTCAAGCACAAGA+GGG 0.666183 4.3:+9814346 MS.gene030765:CDS
TGTTAGACATTATAAATGGG+AGG 0.685230 4.3:+9814252 MS.gene030765:CDS
CCTTCTGTTCCATCAAACCA+AGG 0.691723 4.3:-9814577 None:intergenic
ACTACCCAAACCATCCAATG+AGG 0.700116 4.3:+9816272 MS.gene030765:CDS
GCTGAAGTTCAATACAACTG+TGG 0.701274 4.3:+9816645 MS.gene030765:CDS
AGTATATGGAATGATTCGTG+TGG 0.709085 4.3:+9814976 MS.gene030765:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTTAAAATATTT+TGG - chr4.3:9814464-9814483 None:intergenic 0.0%
!! ATTAGATAAAAAAAACTATT+TGG + chr4.3:9814498-9814517 MS.gene030765:intron 10.0%
!! CATAAAAATTATATCTAATT+TGG + chr4.3:9814883-9814902 MS.gene030765:intron 10.0%
!!! AAACATAGAAACAATAATTT+TGG - chr4.3:9814193-9814212 None:intergenic 15.0%
!!! TATTGTTTCTTTGTATATTT+GGG + chr4.3:9815224-9815243 MS.gene030765:intron 15.0%
!!! TCACCAAATTATAATTTTTT+GGG - chr4.3:9816795-9816814 None:intergenic 15.0%
!!! TTATTGTTTCTTTGTATATT+TGG + chr4.3:9815223-9815242 MS.gene030765:intron 15.0%
!!! TTCACCAAATTATAATTTTT+TGG - chr4.3:9816796-9816815 None:intergenic 15.0%
!! AGACCCAAAAAATTATAATT+TGG + chr4.3:9816789-9816808 MS.gene030765:CDS 20.0%
!! ATATTATTGAACCACAATTT+AGG + chr4.3:9815787-9815806 MS.gene030765:intron 20.0%
!! TATTATTGAACCACAATTTA+GGG + chr4.3:9815788-9815807 MS.gene030765:intron 20.0%
!! TTAAAGCTTCAATAAAATCA+TGG - chr4.3:9814728-9814747 None:intergenic 20.0%
!! TTAATATATAATGACTGATG+TGG + chr4.3:9814531-9814550 MS.gene030765:intron 20.0%
!! TTGTAAATTGTAATAATGCA+GGG + chr4.3:9816055-9816074 MS.gene030765:intron 20.0%
!! TTTGTAAATTGTAATAATGC+AGG + chr4.3:9816054-9816073 MS.gene030765:intron 20.0%
!!! AAAATATTTTGGACTAGTAA+AGG - chr4.3:9814453-9814472 None:intergenic 20.0%
!!! AAACTTGTTATAACCATTAA+TGG + chr4.3:9814310-9814329 MS.gene030765:CDS 20.0%
!!! AATTAAACGAGGTTAAATTT+TGG - chr4.3:9815997-9816016 None:intergenic 20.0%
!!! ATCATTCAAGTTTTTAAACA+AGG + chr4.3:9815470-9815489 MS.gene030765:intron 20.0%
! AACAACAAATCGATAAACAA+AGG - chr4.3:9814635-9814654 None:intergenic 25.0%
! AAGTTTCTTATAACAATCAG+GGG - chr4.3:9814296-9814315 None:intergenic 25.0%
! AATGAATGATTACCTCTATT+TGG - chr4.3:9815432-9815451 None:intergenic 25.0%
! ACAAGTTTCTTATAACAATC+AGG - chr4.3:9814298-9814317 None:intergenic 25.0%
! ATAGAGTCTCATTTCTATAT+GGG + chr4.3:9816913-9816932 MS.gene030765:CDS 25.0%
! ATTGTTCATAAGTACTCTTA+TGG - chr4.3:9815066-9815085 None:intergenic 25.0%
! CAAGTTTCTTATAACAATCA+GGG - chr4.3:9814297-9814316 None:intergenic 25.0%
! CACAACAATGTTGTAAAAAT+CGG + chr4.3:9815539-9815558 MS.gene030765:intron 25.0%
! CTATCAAAGTCATAAGAAAA+AGG - chr4.3:9815019-9815038 None:intergenic 25.0%
! TATAGAGTCTCATTTCTATA+TGG + chr4.3:9816912-9816931 MS.gene030765:CDS 25.0%
! TCTATGTTTCTTTCTAATTC+TGG + chr4.3:9814204-9814223 MS.gene030765:CDS 25.0%
! TTATTAAAATCATAGCCATC+AGG - chr4.3:9816565-9816584 None:intergenic 25.0%
!! TAATTATGATATTTTCAGCG+TGG + chr4.3:9816582-9816601 MS.gene030765:CDS 25.0%
!! TGGTGTTAGACATTATAAAT+GGG + chr4.3:9814249-9814268 MS.gene030765:CDS 25.0%
!!! GAAGCATTATTTTGAATGAT+TGG + chr4.3:9815038-9815057 MS.gene030765:CDS 25.0%
!!! GGTTAAATTTTGGTAATAGT+CGG - chr4.3:9815987-9816006 None:intergenic 25.0%
!!! GTTAAATTTTGGTAATAGTC+GGG - chr4.3:9815986-9816005 None:intergenic 25.0%
!!! TTATCGATTTGTTGTTGATA+GGG + chr4.3:9814639-9814658 MS.gene030765:CDS 25.0%
!!! TTTATCGATTTGTTGTTGAT+AGG + chr4.3:9814638-9814657 MS.gene030765:CDS 25.0%
!!! TTTTGAAGAAGGAATTGAAA+GGG + chr4.3:9816948-9816967 MS.gene030765:CDS 25.0%
!!! TTTTTGAAGAAGGAATTGAA+AGG + chr4.3:9816947-9816966 MS.gene030765:CDS 25.0%
AAACATGTCAAAACTAGTTC+TGG - chr4.3:9816037-9816056 None:intergenic 30.0%
AACACACAAAACACTATAGA+CGG + chr4.3:9816433-9816452 MS.gene030765:CDS 30.0%
AACCAGATGTAAGAATTAGA+TGG + chr4.3:9815125-9815144 MS.gene030765:intron 30.0%
AAGAATCTCTACATATACTC+AGG + chr4.3:9816133-9816152 MS.gene030765:CDS 30.0%
AAGTCATAAGAAAAAGGTTC+AGG - chr4.3:9815013-9815032 None:intergenic 30.0%
ACATATTTAATGTTACAGCC+TGG + chr4.3:9814908-9814927 MS.gene030765:intron 30.0%
AGAGTGAGAAAAATTAAACG+AGG - chr4.3:9816008-9816027 None:intergenic 30.0%
AGTCATAAGAAAAAGGTTCA+GGG - chr4.3:9815012-9815031 None:intergenic 30.0%
ATCCATCTAATTCTTACATC+TGG - chr4.3:9815130-9815149 None:intergenic 30.0%
CTTCTAGCAATGGAATTTAT+AGG + chr4.3:9816623-9816642 MS.gene030765:CDS 30.0%
CTTTAAGTGCAACAAGATAA+GGG - chr4.3:9816507-9816526 None:intergenic 30.0%
GCACTTAAAGAGAATATAAC+TGG + chr4.3:9816517-9816536 MS.gene030765:CDS 30.0%
GTGTTGAAATTGAAAAGCAA+TGG - chr4.3:9814832-9814851 None:intergenic 30.0%
TAGAGATTCTTAACCACAAA+AGG - chr4.3:9816124-9816143 None:intergenic 30.0%
TAGTTAAAAATGCCTAAACC+AGG - chr4.3:9816253-9816272 None:intergenic 30.0%
TCTCATTTCTATATGGGAAT+GGG + chr4.3:9816919-9816938 MS.gene030765:CDS 30.0%
TCTTTAAGTGCAACAAGATA+AGG - chr4.3:9816508-9816527 None:intergenic 30.0%
TGTTAGACATTATAAATGGG+AGG + chr4.3:9814252-9814271 MS.gene030765:CDS 30.0%
TGTTTGATCAACAGTGAATT+TGG - chr4.3:9814793-9814812 None:intergenic 30.0%
TTCTTCAATTGTCTAATTGC+TGG + chr4.3:9815198-9815217 MS.gene030765:intron 30.0%
TTTAAGTGCAACAAGATAAG+GGG - chr4.3:9816506-9816525 None:intergenic 30.0%
! ATCTTCATGGACATGATTTT+TGG + chr4.3:9816728-9816747 MS.gene030765:CDS 30.0%
! CATGGTTCAATTGGTTTAAT+CGG - chr4.3:9815832-9815851 None:intergenic 30.0%
! CTGGTGTTAGACATTATAAA+TGG + chr4.3:9814248-9814267 MS.gene030765:CDS 30.0%
! GAGGTTTGATTGTGTAATTT+TGG - chr4.3:9816381-9816400 None:intergenic 30.0%
! TCTTCATGGACATGATTTTT+GGG + chr4.3:9816729-9816748 MS.gene030765:CDS 30.0%
! TTTTTATAAAGAAGCCAGAC+TGG - chr4.3:9815689-9815708 None:intergenic 30.0%
AAGAAGGAATTGAAAGGGTT+GGG + chr4.3:9816953-9816972 MS.gene030765:CDS 35.0%
AATGACTACGACTACCATTA+AGG + chr4.3:9815915-9815934 MS.gene030765:intron 35.0%
AGCACTTAGTTTCCAAATAG+AGG + chr4.3:9815417-9815436 MS.gene030765:CDS 35.0%
AGTACTTATGAACAATCTGC+TGG + chr4.3:9815070-9815089 MS.gene030765:CDS 35.0%
AGTATATGGAATGATTCGTG+TGG + chr4.3:9814976-9814995 MS.gene030765:CDS 35.0%
ATAATAGTGAGACACATCCA+TGG + chr4.3:9816704-9816723 MS.gene030765:CDS 35.0%
CAAAACTATGACTCTATCTG+AGG - chr4.3:9816410-9816429 None:intergenic 35.0%
CAATGTGATCAAAACTAGAC+CGG - chr4.3:9815881-9815900 None:intergenic 35.0%
CAGTGAATTTGGCAAAATCA+TGG - chr4.3:9814782-9814801 None:intergenic 35.0%
CTTCAACAACAGTCATGTTA+TGG - chr4.3:9816081-9816100 None:intergenic 35.0%
GCACAGTATTCTTCATAATG+GGG - chr4.3:9816819-9816838 None:intergenic 35.0%
GGCACAGTATTCTTCATAAT+GGG - chr4.3:9816820-9816839 None:intergenic 35.0%
GTCTCATTTCTATATGGGAA+TGG + chr4.3:9816918-9816937 MS.gene030765:CDS 35.0%
TACCTTTATCATGCTCACTA+TGG + chr4.3:9814935-9814954 MS.gene030765:CDS 35.0%
TCAACTTCAACTAAGCCTAA+GGG + chr4.3:9814162-9814181 MS.gene030765:CDS 35.0%
TCACTTCTGATTCATGGAAA+AGG + chr4.3:9815256-9815275 MS.gene030765:CDS 35.0%
TGATCCAGTAGTTTCTTGAT+GGG - chr4.3:9816195-9816214 None:intergenic 35.0%
TGGCACAGTATTCTTCATAA+TGG - chr4.3:9816821-9816840 None:intergenic 35.0%
TGTGCATACATCAAAAACCA+TGG - chr4.3:9815523-9815542 None:intergenic 35.0%
TTAAAATCATAGCCATCAGG+TGG - chr4.3:9816562-9816581 None:intergenic 35.0%
TTCAACTTCAACTAAGCCTA+AGG + chr4.3:9814161-9814180 MS.gene030765:CDS 35.0%
TTCCATAGTGAGCATGATAA+AGG - chr4.3:9814940-9814959 None:intergenic 35.0%
! ACAAATGCTACTTCTAGCAA+TGG + chr4.3:9816613-9816632 MS.gene030765:CDS 35.0%
! ACACTATGTTGATCCTTTTG+TGG + chr4.3:9816108-9816127 MS.gene030765:CDS 35.0%
! CTTTTGGATCATGGTTCAAT+TGG - chr4.3:9815841-9815860 None:intergenic 35.0%
! GAACCACAATTTAGGGTTAA+GGG + chr4.3:9815795-9815814 MS.gene030765:intron 35.0%
! GTCTGCAATTCCTTTTCAAT+GGG + chr4.3:9815096-9815115 MS.gene030765:CDS 35.0%
! TGAACCACAATTTAGGGTTA+AGG + chr4.3:9815794-9815813 MS.gene030765:intron 35.0%
! TGTCTGCAATTCCTTTTCAA+TGG + chr4.3:9815095-9815114 MS.gene030765:CDS 35.0%
!!! GATTTTTGGGTACTTGGATA+TGG + chr4.3:9816742-9816761 MS.gene030765:CDS 35.0%
AACTGCGTTTCAACCACAAT+TGG + chr4.3:9815658-9815677 MS.gene030765:intron 40.0%
AAGACCCATCAAGAAACTAC+TGG + chr4.3:9816188-9816207 MS.gene030765:CDS 40.0%
AAGCTACCTTCATCCATCAT+GGG + chr4.3:9816976-9816995 MS.gene030765:CDS 40.0%
ACCATTAATGGAAAGACTCC+AGG + chr4.3:9814322-9814341 MS.gene030765:CDS 40.0%
AGAATCGTATGTGACTGATG+TGG - chr4.3:9815941-9815960 None:intergenic 40.0%
ATCGGATAATCCTGGTGTTT+GGG + chr4.3:9816876-9816895 MS.gene030765:CDS 40.0%
ATGACTGTTGTTGAAGCAGA+TGG + chr4.3:9816085-9816104 MS.gene030765:CDS 40.0%
ATGCTCACTATGGAATGCAA+AGG + chr4.3:9814945-9814964 MS.gene030765:CDS 40.0%
CAAATGTTGTCAGCAGAAAC+AGG + chr4.3:9816218-9816237 MS.gene030765:CDS 40.0%
CATGAATCAGAAGTGACTGA+GGG - chr4.3:9815252-9815271 None:intergenic 40.0%
GAAAAAGGTTCAGGGTCATT+AGG - chr4.3:9815004-9815023 None:intergenic 40.0%
GAAGAAGGAATTGAAAGGGT+TGG + chr4.3:9816952-9816971 MS.gene030765:CDS 40.0%
GCTGAAGTTCAATACAACTG+TGG + chr4.3:9816645-9816664 MS.gene030765:CDS 40.0%
GGGAGGTGAAGTATGATTAT+AGG + chr4.3:9814269-9814288 MS.gene030765:CDS 40.0%
GTGATCCAGTAGTTTCTTGA+TGG - chr4.3:9816196-9816215 None:intergenic 40.0%
GTTTCTGCTGACAACATTTG+AGG - chr4.3:9816218-9816237 None:intergenic 40.0%
TAATCTCAGTTGAGACACCA+TGG + chr4.3:9815503-9815522 MS.gene030765:intron 40.0%
TATGACAGATTGGAACTCCT+TGG + chr4.3:9814560-9814579 MS.gene030765:intron 40.0%
TCCTGGAGTCTTTCCATTAA+TGG - chr4.3:9814326-9814345 None:intergenic 40.0%
TCTCAATGTCCTATACTACC+TGG + chr4.3:9814604-9814623 MS.gene030765:CDS 40.0%
TGACCCTTAACCCTAAATTG+TGG - chr4.3:9815801-9815820 None:intergenic 40.0%
TGCTCACTATGGAATGCAAA+GGG + chr4.3:9814946-9814965 MS.gene030765:CDS 40.0%
TGGGTACTTGGATATGGAAA+GGG + chr4.3:9816748-9816767 MS.gene030765:CDS 40.0%
TTGGGTACTTGGATATGGAA+AGG + chr4.3:9816747-9816766 MS.gene030765:CDS 40.0%
TTTCTATATGGGAATGGGAG+TGG + chr4.3:9816924-9816943 MS.gene030765:CDS 40.0%
! AATTCCTTTTCAATGGGTGG+GGG + chr4.3:9815102-9815121 MS.gene030765:CDS 40.0%
! ATGACTCTATCTGAGGTTGT+TGG - chr4.3:9816403-9816422 None:intergenic 40.0%
! ATTGGAACTCCTTGGTTTGA+TGG + chr4.3:9814568-9814587 MS.gene030765:CDS 40.0%
! CAATTCCTTTTCAATGGGTG+GGG + chr4.3:9815101-9815120 MS.gene030765:CDS 40.0%
! CAATTTAGGGTTAAGGGTCA+AGG + chr4.3:9815801-9815820 MS.gene030765:intron 40.0%
! CAGAAAACCTTGCTATCCAT+TGG + chr4.3:9814407-9814426 MS.gene030765:CDS 40.0%
! CTTGGTTTGATGGAACAGAA+GGG + chr4.3:9814578-9814597 MS.gene030765:CDS 40.0%
! GATCAAACGAGTGAGACTTT+TGG - chr4.3:9815857-9815876 None:intergenic 40.0%
! GCAATTCCTTTTCAATGGGT+GGG + chr4.3:9815100-9815119 MS.gene030765:CDS 40.0%
! GCATGATAAAGGTATGTACC+AGG - chr4.3:9814929-9814948 None:intergenic 40.0%
! GTGGTTTGTGTATGACAGAT+TGG + chr4.3:9814550-9814569 MS.gene030765:intron 40.0%
! TGCAATTCCTTTTCAATGGG+TGG + chr4.3:9815099-9815118 MS.gene030765:CDS 40.0%
! TTGGTTTGATGGAACAGAAG+GGG + chr4.3:9814579-9814598 MS.gene030765:CDS 40.0%
! TTTGGTGAGCTTTGATTGCA+AGG - chr4.3:9816363-9816382 None:intergenic 40.0%
!! ATGGGAGTGGTTTTTGAAGA+AGG + chr4.3:9816937-9816956 MS.gene030765:CDS 40.0%
!! CTGGTTCTATCGGTTCTATA+GGG - chr4.3:9815634-9815653 None:intergenic 40.0%
!!! ATAATTTTGGTGCTGCCCTT+AGG - chr4.3:9814180-9814199 None:intergenic 40.0%
!!! GGACATGATTTTTGGGTACT+TGG + chr4.3:9816736-9816755 MS.gene030765:CDS 40.0%
AAAAATGCCTAAACCAGGCG+AGG - chr4.3:9816248-9816267 None:intergenic 45.0%
AAATCATAGCCATCAGGTGG+AGG - chr4.3:9816559-9816578 None:intergenic 45.0%
AATTTCCACAAAGCTGAGGC+TGG + chr4.3:9814229-9814248 MS.gene030765:CDS 45.0%
ACACATCCATGGCATCTTCA+TGG + chr4.3:9816715-9816734 MS.gene030765:CDS 45.0%
ACCTACCATTCAAGCACAAG+AGG + chr4.3:9814345-9814364 MS.gene030765:CDS 45.0%
ACTACCCAAACCATCCAATG+AGG + chr4.3:9816272-9816291 MS.gene030765:CDS 45.0%
AGGTTTCGATCGGATAATCC+TGG + chr4.3:9816868-9816887 MS.gene030765:CDS 45.0%
AGTCTCACTCGTTTGATCAC+CGG + chr4.3:9815859-9815878 MS.gene030765:intron 45.0%
ATCACCCTCTTGTGCTTGAA+TGG - chr4.3:9814353-9814372 None:intergenic 45.0%
CAAACACCAGCAAGTAAGCT+TGG - chr4.3:9815304-9815323 None:intergenic 45.0%
CAATGAAAAGCCCAAACACC+AGG - chr4.3:9816889-9816908 None:intergenic 45.0%
CATTTGGTTGGACTGCTTTG+AGG + chr4.3:9816848-9816867 MS.gene030765:CDS 45.0%
CCATGAATCAGAAGTGACTG+AGG - chr4.3:9815253-9815272 None:intergenic 45.0%
CCATTGGCATGGTATTAGAC+AGG + chr4.3:9814423-9814442 MS.gene030765:CDS 45.0%
CCTACCATTCAAGCACAAGA+GGG + chr4.3:9814346-9814365 MS.gene030765:CDS 45.0%
CCTATAGAACCGATAGAACC+AGG + chr4.3:9815632-9815651 MS.gene030765:intron 45.0%
CCTCAGTCACTTCTGATTCA+TGG + chr4.3:9815250-9815269 MS.gene030765:intron 45.0%
CCTGTCTAATACCATGCCAA+TGG - chr4.3:9814426-9814445 None:intergenic 45.0%
CCTTCTGTTCCATCAAACCA+AGG - chr4.3:9814580-9814599 None:intergenic 45.0%
CTATAGACGGTGTTCGTCAT+TGG + chr4.3:9816446-9816465 MS.gene030765:CDS 45.0%
CTGCAAGTGTGAATTGTCTG+CGG - chr4.3:9815611-9815630 None:intergenic 45.0%
GAAGCTACCTTCATCCATCA+TGG + chr4.3:9816975-9816994 MS.gene030765:CDS 45.0%
GAGACGACTGTTTGCGAAAA+GGG - chr4.3:9815352-9815371 None:intergenic 45.0%
GATCGGATAATCCTGGTGTT+TGG + chr4.3:9816875-9816894 MS.gene030765:CDS 45.0%
GGCAAAAGCAAAGGCTTCTT+AGG + chr4.3:9817003-9817022 MS.gene030765:CDS 45.0%
GGTGAATTTCCACAAAGCTG+AGG + chr4.3:9814225-9814244 MS.gene030765:CDS 45.0%
GTTGTAAAAATCGGACCGAC+TGG + chr4.3:9815548-9815567 MS.gene030765:intron 45.0%
TACCATGCCAATGGATAGCA+AGG - chr4.3:9814417-9814436 None:intergenic 45.0%
TATGGAATGCAAAGGGAAGC+AGG + chr4.3:9814953-9814972 MS.gene030765:CDS 45.0%
TCATGTCCATGAAGATGCCA+TGG - chr4.3:9816724-9816743 None:intergenic 45.0%
TGAGACGACTGTTTGCGAAA+AGG - chr4.3:9815353-9815372 None:intergenic 45.0%
TGGCATGGTATTAGACAGGT+TGG + chr4.3:9814427-9814446 MS.gene030765:intron 45.0%
TGGTTTCCAGTGAAACCAGT+CGG - chr4.3:9815566-9815585 None:intergenic 45.0%
TTAGCACCAAGCTTACTTGC+TGG + chr4.3:9815295-9815314 MS.gene030765:CDS 45.0%
! AACCTTGCTATCCATTGGCA+TGG + chr4.3:9814412-9814431 MS.gene030765:CDS 45.0%
! AAGGTGTCTCCAGGTAGTAT+AGG - chr4.3:9814616-9814635 None:intergenic 45.0%
! ACTCTATCTGAGGTTGTTGG+AGG - chr4.3:9816400-9816419 None:intergenic 45.0%
! ATGGGTTGTGGCAAAAGCAA+AGG + chr4.3:9816994-9817013 MS.gene030765:CDS 45.0%
! CAAAGGGAAGCAGGAGTATA+TGG + chr4.3:9814962-9814981 MS.gene030765:CDS 45.0%
! CACAATTGGTTCAACCAGTC+TGG + chr4.3:9815672-9815691 MS.gene030765:intron 45.0%
! CAGACTGGTTGAACCAATTG+TGG - chr4.3:9815674-9815693 None:intergenic 45.0%
! CCTTGGTTTGATGGAACAGA+AGG + chr4.3:9814577-9814596 MS.gene030765:CDS 45.0%
! CGAGTGAGACTTTTGGATCA+TGG - chr4.3:9815850-9815869 None:intergenic 45.0%
! TGTGACTGATGTGGCCTTAA+TGG - chr4.3:9815932-9815951 None:intergenic 45.0%
! TTTTCGCAAACAGTCGTCTC+AGG + chr4.3:9815352-9815371 MS.gene030765:CDS 45.0%
!! CCTGGTTCTATCGGTTCTAT+AGG - chr4.3:9815635-9815654 None:intergenic 45.0%
!! CGATAAACAAAGGTGTCTCC+AGG - chr4.3:9814625-9814644 None:intergenic 45.0%
!! GACTGCTTTGAGGTTTCGAT+CGG + chr4.3:9816858-9816877 MS.gene030765:CDS 45.0%
!! GCAGTTCAACCTGGTTCTAT+CGG - chr4.3:9815644-9815663 None:intergenic 45.0%
AAACCAGCTGGTGCAACACA+TGG + chr4.3:9815580-9815599 MS.gene030765:intron 50.0%
AACCAAACACCTCCACCTGA+TGG + chr4.3:9816547-9816566 MS.gene030765:CDS 50.0%
ACTGTGCCAGTGCACTCATT+TGG + chr4.3:9816832-9816851 MS.gene030765:CDS 50.0%
CCCTCTTGTGCTTGAATGGT+AGG - chr4.3:9814349-9814368 None:intergenic 50.0%
GACTCAACATTGTCCCAAGC+TGG - chr4.3:9816325-9816344 None:intergenic 50.0%
GCGACCTCATTGGATGGTTT+GGG - chr4.3:9816279-9816298 None:intergenic 50.0%
GGTTGAAACGCAGTTCAACC+TGG - chr4.3:9815653-9815672 None:intergenic 50.0%
GTCCAACCAAATGAGTGCAC+TGG - chr4.3:9816841-9816860 None:intergenic 50.0%
TAACACCAGCCTCAGCTTTG+TGG - chr4.3:9814237-9814256 None:intergenic 50.0%
TCAACATTGTCCCAAGCTGG+TGG - chr4.3:9816322-9816341 None:intergenic 50.0%
TGCCAGTGCACTCATTTGGT+TGG + chr4.3:9816836-9816855 MS.gene030765:CDS 50.0%
TGGTTTCACTGGAAACCAGC+TGG + chr4.3:9815568-9815587 MS.gene030765:intron 50.0%
TGTGCTTGAATGGTAGGTCC+TGG - chr4.3:9814343-9814362 None:intergenic 50.0%
! CAAGATAAGGGGTGTGAGGT+AGG - chr4.3:9816495-9816514 None:intergenic 50.0%
! CCTTCATCCATCATGGGTTG+TGG + chr4.3:9816982-9817001 MS.gene030765:CDS 50.0%
! GCAACAAGATAAGGGGTGTG+AGG - chr4.3:9816499-9816518 None:intergenic 50.0%
! GCTTTTGCCACAACCCATGA+TGG - chr4.3:9816992-9817011 None:intergenic 50.0%
!! CCACAACCCATGATGGATGA+AGG - chr4.3:9816985-9817004 None:intergenic 50.0%
!! TGCGAAAAGGGAGAGCATTC+AGG - chr4.3:9815340-9815359 None:intergenic 50.0%
AGAAACAGGACAACCTCGCC+TGG + chr4.3:9816232-9816251 MS.gene030765:CDS 55.0%
AGGACAACCTCGCCTGGTTT+AGG + chr4.3:9816238-9816257 MS.gene030765:CDS 55.0%
GAACCATGTGTTGCACCAGC+TGG - chr4.3:9815586-9815605 None:intergenic 55.0%
GGCGACCTCATTGGATGGTT+TGG - chr4.3:9816280-9816299 None:intergenic 55.0%
GGTTCCCCCACCCATTGAAA+AGG - chr4.3:9815109-9815128 None:intergenic 55.0%
TCCACCATCTCCACCAGCTT+GGG + chr4.3:9816309-9816328 MS.gene030765:CDS 55.0%
TTGTCCCAAGCTGGTGGAGA+TGG - chr4.3:9816316-9816335 None:intergenic 55.0%
!! AGCCATCAGGTGGAGGTGTT+TGG - chr4.3:9816552-9816571 None:intergenic 55.0%
!! ATCGGACCGACTGGTTTCAC+TGG + chr4.3:9815557-9815576 MS.gene030765:intron 55.0%
!! GATGTTGGTGGCGACCTCAT+TGG - chr4.3:9816289-9816308 None:intergenic 55.0%
!! GGAGATGGTGGAGATGTTGG+TGG - chr4.3:9816301-9816320 None:intergenic 55.0%
!! GGTGGAGATGGTGGAGATGT+TGG - chr4.3:9816304-9816323 None:intergenic 55.0%
!! TTGGTGGCGACCTCATTGGA+TGG - chr4.3:9816285-9816304 None:intergenic 55.0%
CTCCACCATCTCCACCAGCT+TGG + chr4.3:9816308-9816327 MS.gene030765:CDS 60.0%
TCCCAAGCTGGTGGAGATGG+TGG - chr4.3:9816313-9816332 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 9814157 9817035 9814157 ID=MS.gene030765
chr4.3 mRNA 9814157 9817035 9814157 ID=MS.gene030765.t1;Parent=MS.gene030765
chr4.3 exon 9814157 9814444 9814157 ID=MS.gene030765.t1.exon1;Parent=MS.gene030765.t1
chr4.3 CDS 9814157 9814444 9814157 ID=cds.MS.gene030765.t1;Parent=MS.gene030765.t1
chr4.3 exon 9814568 9814660 9814568 ID=MS.gene030765.t1.exon2;Parent=MS.gene030765.t1
chr4.3 CDS 9814568 9814660 9814568 ID=cds.MS.gene030765.t1;Parent=MS.gene030765.t1
chr4.3 exon 9814926 9815132 9814926 ID=MS.gene030765.t1.exon3;Parent=MS.gene030765.t1
chr4.3 CDS 9814926 9815132 9814926 ID=cds.MS.gene030765.t1;Parent=MS.gene030765.t1
chr4.3 exon 9815256 9815438 9815256 ID=MS.gene030765.t1.exon4;Parent=MS.gene030765.t1
chr4.3 CDS 9815256 9815438 9815256 ID=cds.MS.gene030765.t1;Parent=MS.gene030765.t1
chr4.3 exon 9816076 9817035 9816076 ID=MS.gene030765.t1.exon5;Parent=MS.gene030765.t1
chr4.3 CDS 9816076 9817035 9816076 ID=cds.MS.gene030765.t1;Parent=MS.gene030765.t1
Gene Sequence

>MS.gene030765

ATGGTTCAACTTCAACTAAGCCTAAGGGCAGCACCAAAATTATTGTTTCTATGTTTCTTTCTAATTCTGGTGAATTTCCACAAAGCTGAGGCTGGTGTTAGACATTATAAATGGGAGGTGAAGTATGATTATAGGTCCCCTGATTGTTATAAGAAACTTGTTATAACCATTAATGGAAAGACTCCAGGACCTACCATTCAAGCACAAGAGGGTGATACTGTTGTAGTTGAAGTTAACAACAAATTGCTCACAGAAAACCTTGCTATCCATTGGCATGGTATTAGACAGGTTGGCCTTTACTAGTCCAAAATATTTTAAATTATAATATGAATAAATATAAAATTAGATAAAAAAAACTATTTGGTGCTTAATGATTAATATATAATGACTGATGTGGTTTGTGTATGACAGATTGGAACTCCTTGGTTTGATGGAACAGAAGGGGTGTCTCAATGTCCTATACTACCTGGAGACACCTTTGTTTATCGATTTGTTGTTGATAGGGTAAGTTGTCAAAATGAAAAGATGAATGAATTCGTGCATGTTTAGAATCAATATGAGTTTGAGACCATGATTTTATTGAAGCTTTAAAGTGTAGTTTTCGTCAAATCTTAGTGACACACCATGATTTTGCCAAATTCACTGTTGATCAAACATGATCTATTCATTGATCCATTGCTTTTCAATTTCAACACTAACAAACAATATTTATATAATCAATCATAGCATAAAAATTATATCTAATTTGGTTACATATTTAATGTTACAGCCTGGTACATACCTTTATCATGCTCACTATGGAATGCAAAGGGAAGCAGGAGTATATGGAATGATTCGTGTGGCACCTAATGACCCTGAACCTTTTTCTTATGACTTTGATAGAAGCATTATTTTGAATGATTGGTACCATAAGAGTACTTATGAACAATCTGCTGGATTGTCTGCAATTCCTTTTCAATGGGTGGGGGAACCAGATGTAAGAATTAGATGGATATACTAATCAGAAAAATACAAATTCAAAATCTTATATCTTAATTATCTTTCTTCAATTGTCTAATTGCTGGTTTTATTGTTTCTTTGTATATTTGGGTTCCCTCAGTCACTTCTGATTCATGGAAAAGGAAGATACAACTGTTCGTTAGCACCAAGCTTACTTGCTGGTGTTTGTAACTCATCAAATCCTGAATGCTCTCCCTTTTCGCAAACAGTCGTCTCAGGAAAAACATACAGAATTAGAGTTGCTAGCTTGACTGCTTTATCAGCACTTAGTTTCCAAATAGAGGTAATCATTCATTCACTCAATTATTCTAAGTATCATTCAAGTTTTTAAACAAGGTCTGCGACAATAATCTCAGTTGAGACACCATGGTTTTTGATGTATGCACAACAATGTTGTAAAAATCGGACCGACTGGTTTCACTGGAAACCAGCTGGTGCAACACATGGTTCAGCCGCAGACAATTCACACTTGCAGCCCTATAGAACCGATAGAACCAGGTTGAACTGCGTTTCAACCACAATTGGTTCAACCAGTCTGGCTTCTTTATAAAAAATATACATTTTTAATGTCTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTCTTAGTCATATTATTGAACCACAATTTAGGGTTAAGGGTCAAGGCTAAACCGATTAAACCAATTGAACCATGATCCAAAAGTCTCACTCGTTTGATCACCGGTCTAGTTTTGATCACATTGATCTACTATCACAGAATGACTACGACTACCATTAAGGCCACATCAGTCACATACGATTCTTTGCAATATCAAAAGATTGTGACCCGACTATTACCAAAATTTAACCTCGTTTAATTTTTCTCACTCTTTACATCCAGAACTAGTTTTGACATGTTTGTAAATTGTAATAATGCAGGGCCATAACATGACTGTTGTTGAAGCAGATGGACACTATGTTGATCCTTTTGTGGTTAAGAATCTCTACATATACTCAGGTGAAACATACTCAGTTCTAGTCAAAACTGATCAAGACCCATCAAGAAACTACTGGATCACCTCAAATGTTGTCAGCAGAAACAGGACAACCTCGCCTGGTTTAGGCATTTTTAACTACTACCCAAACCATCCAATGAGGTCGCCACCAACATCTCCACCATCTCCACCAGCTTGGGACAATGTTGAGTCAAGACATACTCAAAGCCTTGCAATCAAAGCTCACCAAAATTACACAATCAAACCTCCAACAACCTCAGATAGAGTCATAGTTTTGCTCAACACACAAAACACTATAGACGGTGTTCGTCATTGGTCTGTTAACAACGTATCATTTTTCCTACCTCACACCCCTTATCTTGTTGCACTTAAAGAGAATATAACTGGTGAATTCAACCAAACACCTCCACCTGATGGCTATGATTTTAATAATTATGATATTTTCAGCGTGGCTAACAACACAAATGCTACTTCTAGCAATGGAATTTATAGGCTGAAGTTCAATACAACTGTGGATATTATACTACAAAATGCAAACACTATGAATAAAAATAATAGTGAGACACATCCATGGCATCTTCATGGACATGATTTTTGGGTACTTGGATATGGAAAGGGTAAGTTTGATGTGAACAAAGACCCAAAAAATTATAATTTGGTGAACCCCATTATGAAGAATACTGTGCCAGTGCACTCATTTGGTTGGACTGCTTTGAGGTTTCGATCGGATAATCCTGGTGTTTGGGCTTTTCATTGTCATATAGAGTCTCATTTCTATATGGGAATGGGAGTGGTTTTTGAAGAAGGAATTGAAAGGGTTGGGAAGCTACCTTCATCCATCATGGGTTGTGGCAAAAGCAAAGGCTTCTTAGGCCATAATTAA
Protein sequence

>MS.gene030765.t1

MVQLQLSLRAAPKLLFLCFFLILVNFHKAEAGVRHYKWEVKYDYRSPDCYKKLVITINGKTPGPTIQAQEGDTVVVEVNNKLLTENLAIHWHGIRQIGTPWFDGTEGVSQCPILPGDTFVYRFVVDRPGTYLYHAHYGMQREAGVYGMIRVAPNDPEPFSYDFDRSIILNDWYHKSTYEQSAGLSAIPFQWVGEPDSLLIHGKGRYNCSLAPSLLAGVCNSSNPECSPFSQTVVSGKTYRIRVASLTALSALSFQIEGHNMTVVEADGHYVDPFVVKNLYIYSGETYSVLVKTDQDPSRNYWITSNVVSRNRTTSPGLGIFNYYPNHPMRSPPTSPPSPPAWDNVESRHTQSLAIKAHQNYTIKPPTTSDRVIVLLNTQNTIDGVRHWSVNNVSFFLPHTPYLVALKENITGEFNQTPPPDGYDFNNYDIFSVANNTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVLGYGKGKFDVNKDPKNYNLVNPIMKNTVPVHSFGWTALRFRSDNPGVWAFHCHIESHFYMGMGVVFEEGIERVGKLPSSIMGCGKSKGFLGHN