AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41139

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41139.t1 MTR_4g064530 98.296 587 8 1 1 587 1 585 0.0 1181
MS.gene41139.t1 MTR_4g064530 97.641 551 11 1 1 551 1 549 0.0 1090
MS.gene41139.t1 MTR_7g060460 74.055 582 139 6 14 587 4 581 0.0 898
MS.gene41139.t1 MTR_7g058690 72.867 586 144 6 11 587 1 580 0.0 882
MS.gene41139.t1 MTR_7g458880 70.918 588 156 5 7 587 1 580 0.0 874
MS.gene41139.t1 MTR_7g062250 70.833 576 155 5 16 587 12 578 0.0 865
MS.gene41139.t1 MTR_7g062310 67.504 557 172 4 37 587 40 593 0.0 791
MS.gene41139.t1 MTR_3g462760 54.927 548 232 5 41 587 23 556 0.0 628
MS.gene41139.t1 MTR_5g069680 55.191 549 230 7 41 587 24 558 0.0 628
MS.gene41139.t1 MTR_5g020600 53.916 549 238 6 41 587 31 566 0.0 625
MS.gene41139.t1 MTR_4g015120 55.229 545 232 5 44 587 24 557 0.0 625
MS.gene41139.t1 MTR_5g020620 52.257 576 257 8 14 587 2 561 0.0 619
MS.gene41139.t1 MTR_5g083360 51.473 577 259 10 20 587 3 567 0.0 593
MS.gene41139.t1 MTR_5g081810 52.206 544 237 7 49 587 4 529 0.0 587
MS.gene41139.t1 MTR_5g073210 50.344 582 259 13 13 587 2 560 0.0 550
MS.gene41139.t1 MTR_3g071890 49.378 563 250 12 20 564 13 558 0.0 532
MS.gene41139.t1 MTR_2g008330 46.168 548 285 6 44 587 38 579 0.0 527
MS.gene41139.t1 MTR_8g027375 47.341 583 276 11 21 587 4 571 0.0 527
MS.gene41139.t1 MTR_7g065980 44.974 567 295 8 31 587 12 571 1.44e-174 507
MS.gene41139.t1 MTR_7g065970 47.743 576 277 11 25 587 6 570 3.87e-172 500
MS.gene41139.t1 MTR_4g019225 45.863 556 278 8 45 587 27 572 1.47e-170 496
MS.gene41139.t1 MTR_3g101640 45.704 582 294 12 13 587 5 571 5.78e-169 492
MS.gene41139.t1 MTR_3g101635 46.235 571 285 10 13 577 2 556 8.15e-168 489
MS.gene41139.t1 MTR_8g091390 31.579 570 313 22 44 578 34 561 4.98e-66 226
MS.gene41139.t1 MTR_3g078700 31.362 558 319 19 45 587 27 535 3.42e-62 214
MS.gene41139.t1 MTR_5g081790 42.069 290 143 8 269 553 159 428 6.04e-62 211
MS.gene41139.t1 MTR_5g081790 51.136 176 73 2 19 187 5 174 1.97e-55 194
MS.gene41139.t1 MTR_3g078740 31.336 584 329 21 40 578 22 578 2.02e-60 211
MS.gene41139.t1 MTR_3g078730 31.103 553 314 20 44 578 25 528 5.72e-59 206
MS.gene41139.t1 MTR_4g101650 27.848 553 335 15 19 552 7 514 2.22e-49 181
MS.gene41139.t1 MTR_3g008580 26.582 553 347 14 19 552 4 516 1.32e-46 173
MS.gene41139.t1 MTR_8g073840 44.330 194 69 4 37 229 23 178 1.07e-45 163
MS.gene41139.t1 MTR_1g090707 29.174 545 325 19 58 587 38 536 9.39e-43 162
MS.gene41139.t1 MTR_7g058670 74.074 81 20 1 101 180 13 93 1.11e-38 137
MS.gene41139.t1 MTR_7g051440 26.880 532 318 19 45 552 30 514 7.21e-37 145
MS.gene41139.t1 MTR_1g026410 25.092 546 365 14 44 587 29 532 3.34e-35 140
MS.gene41139.t1 MTR_3g115050 24.725 546 366 14 46 587 29 533 2.67e-33 134
MS.gene41139.t1 MTR_4g049390 25.048 519 319 14 44 547 27 490 2.60e-32 131
MS.gene41139.t1 MTR_4g075690 24.857 523 326 16 44 553 30 498 4.83e-32 130
MS.gene41139.t1 MTR_3g083450 25.283 530 351 15 45 568 27 517 1.10e-30 126
MS.gene41139.t1 MTR_3g083430 25.094 530 352 15 45 568 26 516 2.97e-30 125
MS.gene41139.t1 MTR_2g088080 24.668 527 311 14 44 547 30 493 1.11e-29 123
MS.gene41139.t1 MTR_3g083390 24.906 530 353 15 45 568 26 516 1.87e-29 123
MS.gene41139.t1 MTR_4g048350 24.615 520 319 16 44 547 27 489 2.25e-29 122
MS.gene41139.t1 MTR_5g018270 25.743 505 329 15 44 547 31 490 2.34e-29 122
MS.gene41139.t1 MTR_3g083400 24.717 530 354 15 45 568 26 516 2.43e-29 122
MS.gene41139.t1 MTR_3g083440 24.717 530 354 15 45 568 26 516 3.51e-29 122
MS.gene41139.t1 MTR_4g083210 24.715 526 345 16 45 563 26 507 8.87e-28 117
MS.gene41139.t1 MTR_8g479380 23.992 521 348 15 33 547 13 491 1.06e-27 117
MS.gene41139.t1 MTR_3g083410 24.902 510 338 15 65 568 10 480 4.44e-27 115
MS.gene41139.t1 MTR_8g479390 22.649 521 328 14 44 547 31 493 8.28e-27 115
MS.gene41139.t1 MTR_4g132320 25.000 520 318 17 44 547 31 494 1.39e-25 111
MS.gene41139.t1 MTR_4g075690 28.358 268 179 6 44 310 30 285 2.90e-25 109
MS.gene41139.t1 MTR_4g083190 25.188 532 355 17 19 547 6 497 6.31e-25 109
MS.gene41139.t1 MTR_2g088080 24.086 465 283 14 98 547 3 412 4.03e-20 94.0
MS.gene41139.t1 MTR_2g436410 56.338 71 27 2 388 457 5 72 1.50e-15 73.6
MS.gene41139.t1 MTR_3g079660 42.683 82 45 1 497 578 5 84 1.68e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41139.t1 AT2G29130 70.312 576 157 6 15 587 9 573 0.0 860
MS.gene41139.t1 AT5G60020 69.603 579 155 6 20 587 9 577 0.0 851
MS.gene41139.t1 AT5G60020 71.846 547 141 5 52 587 1 545 0.0 833
MS.gene41139.t1 AT5G60020 69.274 537 144 6 20 545 9 535 0.0 778
MS.gene41139.t1 AT2G38080 54.657 569 240 6 19 587 8 558 0.0 640
MS.gene41139.t1 AT5G58910 52.205 567 251 8 25 587 17 567 0.0 612
MS.gene41139.t1 AT5G03260 52.531 573 250 9 18 587 4 557 0.0 610
MS.gene41139.t1 AT5G58910 52.205 567 250 9 25 587 17 566 0.0 607
MS.gene41139.t1 AT5G05390 53.966 580 238 12 16 587 7 565 0.0 596
MS.gene41139.t1 AT2G40370 51.933 595 251 12 11 587 3 580 0.0 596
MS.gene41139.t1 AT5G01190 52.522 575 253 8 15 587 2 558 0.0 591
MS.gene41139.t1 AT1G18140 50.444 563 258 10 40 587 25 581 0.0 578
MS.gene41139.t1 AT5G58910 51.481 540 241 7 52 587 1 523 0.0 572
MS.gene41139.t1 AT2G30210 50.430 581 265 10 16 587 4 570 0.0 572
MS.gene41139.t1 AT5G01190 51.652 575 244 9 15 587 2 544 0.0 568
MS.gene41139.t1 AT5G07130 50.271 553 255 11 46 587 26 569 0.0 529
MS.gene41139.t1 AT2G46570 45.423 579 287 11 20 587 9 569 0.0 528
MS.gene41139.t1 AT5G09360 44.580 572 291 12 22 587 18 569 6.05e-174 505
MS.gene41139.t1 AT3G09220 46.984 547 271 8 32 570 15 550 6.25e-174 505
MS.gene41139.t1 AT5G48100 45.505 545 277 11 42 577 20 553 7.94e-164 479
MS.gene41139.t1 AT5G07130 50.304 493 225 11 106 587 1 484 4.55e-158 461
MS.gene41139.t1 AT5G07130 50.304 493 225 11 106 587 1 484 4.55e-158 461
MS.gene41139.t1 AT5G01050 43.134 568 296 10 32 587 16 568 4.28e-157 462
MS.gene41139.t1 AT2G46570 45.309 501 246 10 98 587 1 484 5.64e-155 453
MS.gene41139.t1 AT5G01040 42.756 566 299 10 32 587 16 566 2.37e-154 456
MS.gene41139.t1 AT3G09220 48.268 462 221 7 117 570 2 453 3.63e-145 428
MS.gene41139.t1 AT5G21105 30.821 597 345 19 17 577 9 573 2.07e-69 235
MS.gene41139.t1 AT4G39830 30.823 571 324 19 44 578 36 571 2.87e-69 234
MS.gene41139.t1 AT5G21100 29.856 556 314 17 59 578 39 554 1.20e-67 230
MS.gene41139.t1 AT5G21105 31.028 564 320 21 17 545 9 538 7.18e-61 211
MS.gene41139.t1 AT4G39830 29.746 511 285 17 105 578 3 476 3.16e-50 181
MS.gene41139.t1 AT4G39830 29.842 506 281 17 110 578 6 474 8.36e-50 180
MS.gene41139.t1 AT4G12420 27.376 526 323 14 46 552 27 512 5.59e-48 177
MS.gene41139.t1 AT4G12420 27.376 526 323 14 46 552 27 512 5.59e-48 177
MS.gene41139.t1 AT5G51480 27.916 523 314 15 46 547 30 510 5.21e-46 171
MS.gene41139.t1 AT4G39830 28.824 510 278 16 105 578 3 463 1.56e-45 167
MS.gene41139.t1 AT4G25240 27.469 557 333 17 15 547 1 510 3.19e-45 169
MS.gene41139.t1 AT4G25240 27.469 557 333 17 15 547 1 510 3.19e-45 169
MS.gene41139.t1 AT1G75790 28.518 533 335 18 20 547 4 495 8.08e-45 167
MS.gene41139.t1 AT5G21105 32.312 359 207 10 228 577 51 382 3.21e-39 148
MS.gene41139.t1 AT1G21850 24.558 566 344 17 1 553 1 496 1.86e-38 149
MS.gene41139.t1 AT5G48450 27.308 520 337 18 46 561 31 513 2.78e-38 149
MS.gene41139.t1 AT1G21860 25.185 540 344 14 23 553 8 496 5.20e-38 148
MS.gene41139.t1 AT5G48450 27.953 508 325 18 58 561 43 513 5.74e-38 149
MS.gene41139.t1 AT1G76160 25.812 554 337 18 13 553 4 496 9.69e-34 135
MS.gene41139.t1 AT5G66920 24.517 518 329 15 44 551 37 502 3.51e-32 131
MS.gene41139.t1 AT4G22010 25.312 561 346 19 44 587 26 530 6.77e-32 130
MS.gene41139.t1 AT1G41830 24.425 565 383 15 24 587 10 531 1.11e-31 129
MS.gene41139.t1 AT3G13390 25.737 509 334 14 45 547 29 499 8.90e-29 121
MS.gene41139.t1 AT4G28090 23.107 515 351 13 43 553 27 500 2.13e-27 117
MS.gene41139.t1 AT1G55570 25.049 507 340 15 45 547 30 500 4.73e-27 115
MS.gene41139.t1 AT3G13400 25.198 504 342 14 45 547 28 497 5.20e-27 115
MS.gene41139.t1 AT3G13400 25.198 504 342 14 45 547 28 497 5.20e-27 115
MS.gene41139.t1 AT4G37160 24.025 487 328 12 62 547 49 494 1.04e-26 114
MS.gene41139.t1 AT4G38420 21.918 511 363 13 44 553 30 505 4.54e-25 109
MS.gene41139.t1 AT2G23630 25.257 487 321 13 62 547 48 492 1.40e-24 108
MS.gene41139.t1 AT2G23630 25.257 487 321 13 62 547 53 497 1.60e-24 108
MS.gene41139.t1 AT1G55560 29.710 276 183 7 62 336 44 309 2.69e-24 107
MS.gene41139.t1 AT4G38420 22.846 499 325 15 44 529 30 481 8.34e-21 96.3
MS.gene41139.t1 AT4G38420 26.087 276 193 6 44 318 30 295 2.05e-20 94.7
MS.gene41139.t1 AT4G37160 27.016 248 169 4 62 308 49 285 4.88e-20 93.6

Find 150 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACATTTGCAGGGTATTT+TGG 0.173773 4.1:-36166130 None:intergenic
TCTGATGCCTACACCATTAA+TGG 0.176037 4.1:+36165128 MS.gene41139:CDS
ATTGCAGGATACAAGCATTT+TGG 0.187461 4.1:+36166468 MS.gene41139:CDS
TTTGAATTTGAACTATTATT+TGG 0.212461 4.1:-36166232 None:intergenic
CTTCTCCAACAACATTTCTT+TGG 0.228697 4.1:+36166304 MS.gene41139:CDS
CATTTCTTTGGAACTAATAA+TGG 0.256030 4.1:+36166316 MS.gene41139:CDS
AACCTCCCCTGGATTTGTTT+TGG 0.259173 4.1:+36163949 MS.gene41139:CDS
TTTGTTGTTGGTCAAGGTTT+TGG 0.271917 4.1:+36166532 MS.gene41139:CDS
TAACTCTGACCTGTTTGAAT+TGG 0.297459 4.1:-36164674 None:intergenic
CTTTGATGTGCACCTTAGTT+GGG 0.307238 4.1:+36167118 MS.gene41139:CDS
AATACTGTTGCTGTGCCTTC+TGG 0.309543 4.1:+36166613 MS.gene41139:CDS
AATGTGGCATTTGGGTAATT+TGG 0.312994 4.1:-36165914 None:intergenic
ACGAGAAGGGGACAGATTAT+TGG 0.313664 4.1:+36164249 MS.gene41139:CDS
CAATGCAGGCTGATATTGTT+TGG 0.314456 4.1:-36164292 None:intergenic
TACACCATTAATGGGTTTCC+TGG 0.319870 4.1:+36165137 MS.gene41139:CDS
TTGGTGTAGTAATCAACATT+TGG 0.322522 4.1:-36167216 None:intergenic
TGGTGTAGTAATCAACATTT+GGG 0.326399 4.1:-36167215 None:intergenic
TCAACAAGATTAAACTTTGC+AGG 0.331305 4.1:-36166577 None:intergenic
AGTCATCCTTTGCATCTTCA+TGG 0.334535 4.1:+36166499 MS.gene41139:CDS
AAGGAAGTCCCCATTCTCTT+TGG 0.338186 4.1:+36164836 MS.gene41139:CDS
ACCTGAACTCTAGTGTTATA+TGG 0.345887 4.1:-36166442 None:intergenic
GCTTGTGCAATTACAGCTTC+AGG 0.346802 4.1:-36165077 None:intergenic
TGGTTAAGAGCTACTGTCTA+TGG 0.350969 4.1:+36164758 MS.gene41139:CDS
TTACTAACCAAAGTATTGTT+TGG 0.352391 4.1:-36166397 None:intergenic
GGATTTAATTTCTTTGTTGT+TGG 0.356145 4.1:+36166520 MS.gene41139:CDS
TTGCTGTGCCTTCTGGTGGT+TGG 0.366686 4.1:+36166620 MS.gene41139:CDS
CTGATGCCTACACCATTAAT+GGG 0.371595 4.1:+36165129 MS.gene41139:CDS
TATTTGGTCCTTGACAAGTT+TGG 0.374143 4.1:-36166216 None:intergenic
AGGTCCAGGAAACCCATTAA+TGG 0.377126 4.1:-36165141 None:intergenic
AACTCTGACCTGTTTGAATT+GGG 0.379719 4.1:-36164673 None:intergenic
AACAAAATTAGTATCATTGA+TGG 0.379750 4.1:-36166071 None:intergenic
CAACATTTGGGGAGATCCTT+AGG 0.380323 4.1:-36167203 None:intergenic
AGCATGTAGAATGTGGCATT+TGG 0.380488 4.1:-36165923 None:intergenic
GACAAAGAGGAACTCTCTTC+TGG 0.381182 4.1:+36164720 MS.gene41139:CDS
AAAAGCATGGTTACCGTGAA+TGG 0.383433 4.1:+36164199 MS.gene41139:CDS
AGGGGACAGATTATTGGTTA+AGG 0.383575 4.1:+36164255 MS.gene41139:CDS
GTACCCTGCCCTGTGAAATA+TGG 0.385825 4.1:-36165953 None:intergenic
TGCTGTGCCTTCTGGTGGTT+GGG 0.390745 4.1:+36166621 MS.gene41139:CDS
TAGAGTTCAGGTTATATTGC+AGG 0.393539 4.1:+36166453 MS.gene41139:CDS
TACCGTGAATGGGAAGTTCC+CGG 0.400570 4.1:+36164210 MS.gene41139:CDS
GAGAATGGGGACTTCCTTGT+AGG 0.406530 4.1:-36164831 None:intergenic
GTGTAGGCATCAGAAACATT+TGG 0.413299 4.1:-36165119 None:intergenic
GCATGTAGAATGTGGCATTT+GGG 0.416680 4.1:-36165922 None:intergenic
ACTTTGATGTGCACCTTAGT+TGG 0.416806 4.1:+36167117 MS.gene41139:CDS
ACCTTCCTCTTAACCTCCCC+TGG 0.418136 4.1:+36163938 MS.gene41139:CDS
GTTGGGGATTGAGGATGGCT+TGG 0.419155 4.1:+36167135 MS.gene41139:CDS
ACCATATAACACTAGAGTTC+AGG 0.422189 4.1:+36166441 MS.gene41139:CDS
GTATAGTTAAACGGCCTTAA+CGG 0.423945 4.1:-36166364 None:intergenic
TTCGACAATTCCACAGTAGC+TGG 0.425573 4.1:+36165977 MS.gene41139:CDS
AATTTCTTTGTTGTTGGTCA+AGG 0.431250 4.1:+36166526 MS.gene41139:CDS
TTAAGGCCGTTTAACTATAC+AGG 0.432215 4.1:+36166367 MS.gene41139:CDS
AACAATACTTTGGTTAGTAA+TGG 0.432888 4.1:+36166400 MS.gene41139:CDS
GATAAGATTCATTGTGCCTT+GGG 0.433565 4.1:-36164796 None:intergenic
CAAATCCAGGGGAGGTTAAG+AGG 0.435761 4.1:-36163943 None:intergenic
GTGTACAACTTCACCATTGT+TGG 0.440870 4.1:+36164698 MS.gene41139:CDS
TTCATATGTACCAAAGAGAA+TGG 0.444243 4.1:-36164846 None:intergenic
AACGGCCTTAACGGTACAAC+CGG 0.445112 4.1:-36166355 None:intergenic
TGTAGGCATCAGAAACATTT+GGG 0.450843 4.1:-36165118 None:intergenic
GCAACAGTATTCCTCTCAAC+AGG 0.458149 4.1:-36166601 None:intergenic
AACTCCTCCAAACAATACTT+TGG 0.459111 4.1:+36166390 MS.gene41139:CDS
TGCACCTTAGTTGGGGATTG+AGG 0.460367 4.1:+36167126 MS.gene41139:CDS
GGATAAGATTCATTGTGCCT+TGG 0.462220 4.1:-36164797 None:intergenic
CCTTAGTTGGGGATTGAGGA+TGG 0.469162 4.1:+36167130 MS.gene41139:CDS
TCATTGATGGCTGGAAGCAC+AGG 0.471762 4.1:-36166058 None:intergenic
AAAATAGTTCTTACCAATGC+AGG 0.472186 4.1:-36164306 None:intergenic
GGAGTTCCTGTATAGTTAAA+CGG 0.473322 4.1:-36166373 None:intergenic
TCATATGTACCAAAGAGAAT+GGG 0.475158 4.1:-36164845 None:intergenic
TCTGGCATGCTCATTTCTCA+TGG 0.475847 4.1:+36164738 MS.gene41139:CDS
TAGTTCCAAAGAAATGTTGT+TGG 0.480695 4.1:-36166309 None:intergenic
ATTATTTCTGCAGATAAGGT+TGG 0.482733 4.1:+36164150 MS.gene41139:intron
ATTGCACAAGCTCTGCAGAC+AGG 0.483287 4.1:+36165089 MS.gene41139:CDS
ACTCAATGCCCAATTCAAAC+AGG 0.483829 4.1:+36164665 MS.gene41139:CDS
CGATTCCTTGCTGACAATCC+AGG 0.486079 4.1:+36166652 MS.gene41139:CDS
GAAGTAGCCAAAACAAATCC+AGG 0.492773 4.1:-36163956 None:intergenic
TTCACCATTGTTGGACAAAG+AGG 0.495747 4.1:+36164707 MS.gene41139:CDS
GGGCATTGAGTTATGTATGA+TGG 0.498399 4.1:-36164653 None:intergenic
CCTTCTCGTACAACAATTCG+AGG 0.499048 4.1:-36164235 None:intergenic
TGGTCCAAGTATGATGGTAT+TGG 0.499764 4.1:-36165858 None:intergenic
GTATGGTTGAAACAGGTGTT+TGG 0.506981 4.1:+36167081 MS.gene41139:intron
ACCCGGGAACTTCCCATTCA+CGG 0.507216 4.1:-36164212 None:intergenic
GAGCAATTGTAAAGAGGTCC+AGG 0.507787 4.1:-36165155 None:intergenic
CTTCGTAGTGGTTGGTCGGA+TGG 0.508027 4.1:+36164629 MS.gene41139:CDS
CTCGAATTGTTGTACGAGAA+GGG 0.509000 4.1:+36164236 MS.gene41139:CDS
TGTTGGAGAAGTGCTATAGA+AGG 0.510179 4.1:-36166292 None:intergenic
CCTCTTTACAATTGCTCCAA+AGG 0.511152 4.1:+36165161 MS.gene41139:CDS
AAAGCATGGTTACCGTGAAT+GGG 0.513288 4.1:+36164200 MS.gene41139:CDS
AAAATTGCCTCCTCCTCCTA+AGG 0.514093 4.1:+36167187 MS.gene41139:CDS
ATGGCTTGGATTGTTGAGGA+TGG 0.516858 4.1:+36167149 MS.gene41139:CDS
ATTCATTGTGCCTTGGGAGA+AGG 0.517082 4.1:-36164790 None:intergenic
AGAATGGGGACTTCCTTGTA+GGG 0.517590 4.1:-36164830 None:intergenic
TTTGATGTGCACCTTAGTTG+GGG 0.517799 4.1:+36167119 MS.gene41139:CDS
TAGACCATATTTCACAGGGC+AGG 0.518387 4.1:+36165949 MS.gene41139:CDS
GACAGATACATACAAATTGA+AGG 0.527305 4.1:+36165706 MS.gene41139:intron
CTAGCTAGACCATATTTCAC+AGG 0.529517 4.1:+36165944 MS.gene41139:CDS
TACAAATTGAAGGTGAAGCC+AGG 0.530121 4.1:+36165716 MS.gene41139:CDS
GAGGATGGCTTGGATTGTTG+AGG 0.530967 4.1:+36167145 MS.gene41139:CDS
AGAACATTTGTGGTTTGACC+TGG 0.536892 4.1:-36165878 None:intergenic
CTAACCAAAGTATTGTTTGG+AGG 0.538509 4.1:-36166394 None:intergenic
TTGCACAAGCTCTGCAGACA+GGG 0.538737 4.1:+36165090 MS.gene41139:CDS
ACCGTGAATGGGAAGTTCCC+GGG 0.543276 4.1:+36164211 MS.gene41139:CDS
GAGTCCAATACCATCATACT+TGG 0.543746 4.1:+36165854 MS.gene41139:CDS
CCTCGAATTGTTGTACGAGA+AGG 0.546915 4.1:+36164235 MS.gene41139:CDS
CCATCCTCAATCCCCAACTA+AGG 0.552441 4.1:-36167130 None:intergenic
ACTGTTGCTGTGCCTTCTGG+TGG 0.553231 4.1:+36166616 MS.gene41139:CDS
CCTTTGGAGCAATTGTAAAG+AGG 0.556173 4.1:-36165161 None:intergenic
TCTGCAGATAAGGTTGGCAA+AGG 0.561585 4.1:+36164156 MS.gene41139:intron
TGTCACTGTTCCATTATCAA+AGG 0.562747 4.1:+36163886 MS.gene41139:CDS
GGGAGATCCTTAGGAGGAGG+AGG 0.564134 4.1:-36167194 None:intergenic
CAACAAGATTAAACTTTGCA+GGG 0.564792 4.1:-36166576 None:intergenic
CGTACAACAATTCGAGGACC+CGG 0.566305 4.1:-36164229 None:intergenic
TGAGACAACTTCGTAGTGGT+TGG 0.574177 4.1:+36164621 MS.gene41139:CDS
TTAAATCCATGAAGATGCAA+AGG 0.575251 4.1:-36166505 None:intergenic
TTCTAAAATTCCAGCTACTG+TGG 0.577452 4.1:-36165987 None:intergenic
TTGGGGAGATCCTTAGGAGG+AGG 0.578506 4.1:-36167197 None:intergenic
AGGAAACCCATTAATGGTGT+AGG 0.579472 4.1:-36165135 None:intergenic
AAATTAGTATCATTGATGGC+TGG 0.579956 4.1:-36166067 None:intergenic
AATCACCTGGATTGTCAGCA+AGG 0.580919 4.1:-36166657 None:intergenic
CAAACAATATCAGCCTGCAT+TGG 0.581284 4.1:+36164293 MS.gene41139:CDS
TTGACCTGGTCCAAGTATGA+TGG 0.586103 4.1:-36165864 None:intergenic
GACCTCTCATCCTTCTCCCA+AGG 0.596454 4.1:+36164780 MS.gene41139:CDS
TCCAGGGGAGGTTAAGAGGA+AGG 0.601150 4.1:-36163939 None:intergenic
ACAACTTCGTAGTGGTTGGT+CGG 0.604046 4.1:+36164625 MS.gene41139:CDS
AAGTAGCCAAAACAAATCCA+GGG 0.606149 4.1:-36163955 None:intergenic
ATCTTGTTGATCCTGTTGAG+AGG 0.606779 4.1:+36166590 MS.gene41139:CDS
AGTTCCTCTTTGTCCAACAA+TGG 0.608427 4.1:-36164711 None:intergenic
AGACCATATTTCACAGGGCA+GGG 0.613998 4.1:+36165950 MS.gene41139:CDS
TCGAATTGTTGTACGAGAAG+GGG 0.619585 4.1:+36164237 MS.gene41139:CDS
ATCGCGACCCAACCACCAGA+AGG 0.630640 4.1:-36166628 None:intergenic
CATTTGGGGAGATCCTTAGG+AGG 0.640212 4.1:-36167200 None:intergenic
TGCCTTGGGAGAAGGATGAG+AGG 0.645507 4.1:-36164782 None:intergenic
ATGATGGTATTGGACTCGAA+TGG 0.647830 4.1:-36165848 None:intergenic
CATATGTACCAAAGAGAATG+GGG 0.650276 4.1:-36164844 None:intergenic
TGGACTAGTTCCTAGTCCAA+CGG 0.652330 4.1:-36166182 None:intergenic
GACAAATATGCATAGGTGAG+TGG 0.653174 4.1:+36165042 MS.gene41139:intron
AGCCAAAACAAATCCAGGGG+AGG 0.654034 4.1:-36163951 None:intergenic
GTACAACAATTCGAGGACCC+GGG 0.658530 4.1:-36164228 None:intergenic
AAATATGCATAGGTGAGTGG+TGG 0.659012 4.1:+36165045 MS.gene41139:intron
TCTAGCTAGCATGTAGAATG+TGG 0.659413 4.1:-36165930 None:intergenic
TGCACAAGCTCTGCAGACAG+GGG 0.660853 4.1:+36165091 MS.gene41139:CDS
TAAGGTTGGCAAAGGTTACG+AGG 0.665174 4.1:+36164164 MS.gene41139:CDS
AAGATGCATCTGCTTCGACA+AGG 0.668532 4.1:-36165817 None:intergenic
GCACAAGCTCTGCAGACAGG+GGG 0.670081 4.1:+36165092 MS.gene41139:CDS
AACTAAGGTGCACATCAAAG+TGG 0.677837 4.1:-36167115 None:intergenic
TAGCTAGACCATATTTCACA+GGG 0.683532 4.1:+36165945 MS.gene41139:CDS
AATACCATCATACTTGGACC+AGG 0.697209 4.1:+36165860 MS.gene41139:CDS
TAGTAATGGAACAAAGACAG+TGG 0.719057 4.1:+36166414 MS.gene41139:CDS
AGTAGCCAAAACAAATCCAG+GGG 0.722267 4.1:-36163954 None:intergenic
AGGGGAGGTTAAGAGGAAGG+TGG 0.734018 4.1:-36163936 None:intergenic
GGTGTAGTAATCAACATTTG+GGG 0.734375 4.1:-36167214 None:intergenic
GGTGTGAGACAACTTCGTAG+TGG 0.741558 4.1:+36164617 MS.gene41139:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATATGATATATAATATT+TGG - chr4.1:36166955-36166974 None:intergenic 10.0%
!! TTTATTATAAATTTATACTG+AGG - chr4.1:36164880-36164899 None:intergenic 10.0%
!! AAAATAGTATATGATATGAA+AGG + chr4.1:36164993-36165012 MS.gene41139:intron 15.0%
!! TTAAGTGATAAATATTTGAA+AGG - chr4.1:36164050-36164069 None:intergenic 15.0%
!! TTTGAATTTGAACTATTATT+TGG - chr4.1:36166235-36166254 None:intergenic 15.0%
!!! TTTTTATTTGTTTGATCATT+TGG - chr4.1:36166022-36166041 None:intergenic 15.0%
!! AACAAAATTAGTATCATTGA+TGG - chr4.1:36166074-36166093 None:intergenic 20.0%
!! AATAATTCATTTCATGCATA+TGG - chr4.1:36164545-36164564 None:intergenic 20.0%
!! ACTACATATGTTATACAATT+TGG - chr4.1:36164092-36164111 None:intergenic 20.0%
!! TGTACTAATATTGACAATAA+TGG + chr4.1:36164564-36164583 MS.gene41139:intron 20.0%
!!! AAATTAGTTTGTAAAATGAG+AGG - chr4.1:36165612-36165631 None:intergenic 20.0%
!!! AACTAATAATGGTTTTACAA+CGG + chr4.1:36166327-36166346 MS.gene41139:CDS 20.0%
!!! AAGTTTTTGTCAATAGTTTT+AGG - chr4.1:36166154-36166173 None:intergenic 20.0%
!!! AGTTTTTAATAGAACATTTG+TGG - chr4.1:36165891-36165910 None:intergenic 20.0%
!!! TTTTATTATTTCTGCAGATA+AGG + chr4.1:36164146-36164165 MS.gene41139:intron 20.0%
! AACAATACTTTGGTTAGTAA+TGG + chr4.1:36166400-36166419 MS.gene41139:CDS 25.0%
! ACTAGAATTGATGAATTGAT+TGG + chr4.1:36165666-36165685 MS.gene41139:intron 25.0%
! ATATTGTATGTTGTACATCA+TGG + chr4.1:36164504-36164523 MS.gene41139:intron 25.0%
! CATATGTTATACAATTTGGT+AGG - chr4.1:36164088-36164107 None:intergenic 25.0%
! TATCTTTGACAAATATGCAT+AGG + chr4.1:36165035-36165054 MS.gene41139:intron 25.0%
!! AACATTTTCTTTATCCTAAG+TGG - chr4.1:36165564-36165583 None:intergenic 25.0%
!! ACTATTTTCATAAACTATCC+TGG + chr4.1:36166812-36166831 MS.gene41139:intron 25.0%
!! GGATTTAATTTCTTTGTTGT+TGG + chr4.1:36166520-36166539 MS.gene41139:CDS 25.0%
!!! AAAAACTTTTTCTTTACCGT+TGG + chr4.1:36166166-36166185 MS.gene41139:CDS 25.0%
!!! AAACTAAGTGTTGAGAAAAT+AGG + chr4.1:36164392-36164411 MS.gene41139:intron 25.0%
!!! ATCTATTTGCTATGAATGTA+TGG + chr4.1:36167064-36167083 MS.gene41139:intron 25.0%
!!! ATTGGTTTGTTATCATATCA+TGG + chr4.1:36165684-36165703 MS.gene41139:intron 25.0%
!!! CATTTCTTTGGAACTAATAA+TGG + chr4.1:36166316-36166335 MS.gene41139:CDS 25.0%
!!! CTGGAGTTTATACTTTTTTA+AGG + chr4.1:36164934-36164953 MS.gene41139:intron 25.0%
!!! TGGTATTTTATATTTCTAGC+TGG + chr4.1:36164915-36164934 MS.gene41139:intron 25.0%
!!! TTACTAACCAAAGTATTGTT+TGG - chr4.1:36166400-36166419 None:intergenic 25.0%
AAAATAGTTCTTACCAATGC+AGG - chr4.1:36164309-36164328 None:intergenic 30.0%
ACTTATTTAAGCTGATCTGT+TGG - chr4.1:36166928-36166947 None:intergenic 30.0%
CAACAAGATTAAACTTTGCA+GGG - chr4.1:36166579-36166598 None:intergenic 30.0%
GACAGATACATACAAATTGA+AGG + chr4.1:36165706-36165725 MS.gene41139:intron 30.0%
TAGTTCCAAAGAAATGTTGT+TGG - chr4.1:36166312-36166331 None:intergenic 30.0%
TATGAATGTATGGTTGAAAC+AGG + chr4.1:36167074-36167093 MS.gene41139:intron 30.0%
TCAACAAGATTAAACTTTGC+AGG - chr4.1:36166580-36166599 None:intergenic 30.0%
TCATATGTACCAAAGAGAAT+GGG - chr4.1:36164848-36164867 None:intergenic 30.0%
TGAGAAAATAGGATTTGAAC+TGG + chr4.1:36164403-36164422 MS.gene41139:intron 30.0%
TGCATGCATGATAAAAAAAC+AGG + chr4.1:36164591-36164610 MS.gene41139:intron 30.0%
TTAAATCCATGAAGATGCAA+AGG - chr4.1:36166508-36166527 None:intergenic 30.0%
TTCATATGTACCAAAGAGAA+TGG - chr4.1:36164849-36164868 None:intergenic 30.0%
! AAATTAGTATCATTGATGGC+TGG - chr4.1:36166070-36166089 None:intergenic 30.0%
! CGTAATAGATATGTTTTTCC+TGG - chr4.1:36165737-36165756 None:intergenic 30.0%
! TGTGAGTTTTGCAGTTAATT+AGG - chr4.1:36164371-36164390 None:intergenic 30.0%
!! AATTTCTTTGTTGTTGGTCA+AGG + chr4.1:36166526-36166545 MS.gene41139:CDS 30.0%
!! ATTATTTCTGCAGATAAGGT+TGG + chr4.1:36164150-36164169 MS.gene41139:intron 30.0%
!!! CTTGACAAGTTTGGTTTTTT+GGG - chr4.1:36166210-36166229 None:intergenic 30.0%
AACTCCTCCAAACAATACTT+TGG + chr4.1:36166390-36166409 MS.gene41139:CDS 35.0%
AACTCTGACCTGTTTGAATT+GGG - chr4.1:36164676-36164695 None:intergenic 35.0%
AAGTAGCCAAAACAAATCCA+GGG - chr4.1:36163958-36163977 None:intergenic 35.0%
AATGTGGCATTTGGGTAATT+TGG - chr4.1:36165917-36165936 None:intergenic 35.0%
ACAACGACATTTGATATGCT+TGG - chr4.1:36164432-36164451 None:intergenic 35.0%
ACCATATAACACTAGAGTTC+AGG + chr4.1:36166441-36166460 MS.gene41139:CDS 35.0%
ACCTGAACTCTAGTGTTATA+TGG - chr4.1:36166445-36166464 None:intergenic 35.0%
CAACGACATTTGATATGCTT+GGG - chr4.1:36164431-36164450 None:intergenic 35.0%
CATATGTACCAAAGAGAATG+GGG - chr4.1:36164847-36164866 None:intergenic 35.0%
CCAAAAAACCAAACTTGTCA+AGG + chr4.1:36166208-36166227 MS.gene41139:CDS 35.0%
CTTCTCCAACAACATTTCTT+TGG + chr4.1:36166304-36166323 MS.gene41139:CDS 35.0%
GAAAAAACCAAGTTCCACTT+AGG + chr4.1:36165547-36165566 MS.gene41139:intron 35.0%
GATAAGATTCATTGTGCCTT+GGG - chr4.1:36164799-36164818 None:intergenic 35.0%
GCAAAAAGAGCCTTTGATAA+TGG - chr4.1:36163899-36163918 None:intergenic 35.0%
GCATGATAAAAAAACAGGCA+TGG + chr4.1:36164596-36164615 MS.gene41139:intron 35.0%
GGAGTTCCTGTATAGTTAAA+CGG - chr4.1:36166376-36166395 None:intergenic 35.0%
GTATAGTTAAACGGCCTTAA+CGG - chr4.1:36166367-36166386 None:intergenic 35.0%
TAACTCTGACCTGTTTGAAT+TGG - chr4.1:36164677-36164696 None:intergenic 35.0%
TAGCTAGACCATATTTCACA+GGG + chr4.1:36165945-36165964 MS.gene41139:CDS 35.0%
TATTTGGTCCTTGACAAGTT+TGG - chr4.1:36166219-36166238 None:intergenic 35.0%
TCTTTATCCTAAGTGGAACT+TGG - chr4.1:36165557-36165576 None:intergenic 35.0%
TGTACATCATGGATCTAGTT+AGG + chr4.1:36164515-36164534 MS.gene41139:intron 35.0%
TGTAGGCATCAGAAACATTT+GGG - chr4.1:36165121-36165140 None:intergenic 35.0%
TGTCACTGTTCCATTATCAA+AGG + chr4.1:36163886-36163905 MS.gene41139:CDS 35.0%
TTAAGGCCGTTTAACTATAC+AGG + chr4.1:36166367-36166386 MS.gene41139:CDS 35.0%
! ATTGCAGGATACAAGCATTT+TGG + chr4.1:36166468-36166487 MS.gene41139:CDS 35.0%
! TAGAGTTCAGGTTATATTGC+AGG + chr4.1:36166453-36166472 MS.gene41139:CDS 35.0%
! TAGTAATGGAACAAAGACAG+TGG + chr4.1:36166414-36166433 MS.gene41139:CDS 35.0%
! TCCTTTTCAAAAACCCTACA+AGG + chr4.1:36164817-36164836 MS.gene41139:CDS 35.0%
! TGATTGACTATGGTTCTGTT+TGG + chr4.1:36166675-36166694 MS.gene41139:intron 35.0%
! TTGCAGGATACAAGCATTTT+GGG + chr4.1:36166469-36166488 MS.gene41139:CDS 35.0%
! TTTTTCTTTACCGTTGGACT+AGG + chr4.1:36166172-36166191 MS.gene41139:CDS 35.0%
!! CTAACCAAAGTATTGTTTGG+AGG - chr4.1:36166397-36166416 None:intergenic 35.0%
!! CTTATTTTCGTAAGTTCTCC+AGG - chr4.1:36166833-36166852 None:intergenic 35.0%
!! TCCTTGTAGGGTTTTTGAAA+AGG - chr4.1:36164821-36164840 None:intergenic 35.0%
!! TGGTTTTACAACGGATTTTC+CGG + chr4.1:36166336-36166355 MS.gene41139:CDS 35.0%
!! TTCTAAAATTCCAGCTACTG+TGG - chr4.1:36165990-36166009 None:intergenic 35.0%
!!! ATAGTTTTAGGCACATTTGC+AGG - chr4.1:36166142-36166161 None:intergenic 35.0%
!!! CCTTGACAAGTTTGGTTTTT+TGG - chr4.1:36166211-36166230 None:intergenic 35.0%
!!! GAAGCACAGGTTTTAGAATA+GGG - chr4.1:36166048-36166067 None:intergenic 35.0%
!!! TAGTTTTAGGCACATTTGCA+GGG - chr4.1:36166141-36166160 None:intergenic 35.0%
!!! TTTGTTGTTGGTCAAGGTTT+TGG + chr4.1:36166532-36166551 MS.gene41139:CDS 35.0%
AAAGCATGGTTACCGTGAAT+GGG + chr4.1:36164200-36164219 MS.gene41139:CDS 40.0%
AAATATGCATAGGTGAGTGG+TGG + chr4.1:36165045-36165064 MS.gene41139:intron 40.0%
AACTAAGGTGCACATCAAAG+TGG - chr4.1:36167118-36167137 None:intergenic 40.0%
AATACCATCATACTTGGACC+AGG + chr4.1:36165860-36165879 MS.gene41139:CDS 40.0%
ACAATCCAGGTGATTGACTA+TGG + chr4.1:36166665-36166684 MS.gene41139:intron 40.0%
ACGTGCAGCTTGTATATAAC+TGG + chr4.1:36165187-36165206 MS.gene41139:intron 40.0%
ACTCAATGCCCAATTCAAAC+AGG + chr4.1:36164665-36164684 MS.gene41139:CDS 40.0%
ACTTTGATGTGCACCTTAGT+TGG + chr4.1:36167117-36167136 MS.gene41139:CDS 40.0%
AGAACATTTGTGGTTTGACC+TGG - chr4.1:36165881-36165900 None:intergenic 40.0%
AGCATGTAGAATGTGGCATT+TGG - chr4.1:36165926-36165945 None:intergenic 40.0%
AGGAAACCCATTAATGGTGT+AGG - chr4.1:36165138-36165157 None:intergenic 40.0%
AGTAGCCAAAACAAATCCAG+GGG - chr4.1:36163957-36163976 None:intergenic 40.0%
AGTCATCCTTTGCATCTTCA+TGG + chr4.1:36166499-36166518 MS.gene41139:CDS 40.0%
AGTTCCTCTTTGTCCAACAA+TGG - chr4.1:36164714-36164733 None:intergenic 40.0%
ATCTTGTTGATCCTGTTGAG+AGG + chr4.1:36166590-36166609 MS.gene41139:CDS 40.0%
CAAACAATATCAGCCTGCAT+TGG + chr4.1:36164293-36164312 MS.gene41139:CDS 40.0%
CAATGCAGGCTGATATTGTT+TGG - chr4.1:36164295-36164314 None:intergenic 40.0%
CCTCTTTACAATTGCTCCAA+AGG + chr4.1:36165161-36165180 MS.gene41139:CDS 40.0%
CTAGCTAGACCATATTTCAC+AGG + chr4.1:36165944-36165963 MS.gene41139:CDS 40.0%
CTCGAATTGTTGTACGAGAA+GGG + chr4.1:36164236-36164255 MS.gene41139:CDS 40.0%
CTGATGCCTACACCATTAAT+GGG + chr4.1:36165129-36165148 MS.gene41139:CDS 40.0%
CTTTGATGTGCACCTTAGTT+GGG + chr4.1:36167118-36167137 MS.gene41139:CDS 40.0%
GAAGTAGCCAAAACAAATCC+AGG - chr4.1:36163959-36163978 None:intergenic 40.0%
GACAAATATGCATAGGTGAG+TGG + chr4.1:36165042-36165061 MS.gene41139:intron 40.0%
GAGTCCAATACCATCATACT+TGG + chr4.1:36165854-36165873 MS.gene41139:CDS 40.0%
GCATGTAGAATGTGGCATTT+GGG - chr4.1:36165925-36165944 None:intergenic 40.0%
GGATAAGATTCATTGTGCCT+TGG - chr4.1:36164800-36164819 None:intergenic 40.0%
GTATGGTTGAAACAGGTGTT+TGG + chr4.1:36167081-36167100 MS.gene41139:intron 40.0%
GTGTACAACTTCACCATTGT+TGG + chr4.1:36164698-36164717 MS.gene41139:CDS 40.0%
GTGTAGGCATCAGAAACATT+TGG - chr4.1:36165122-36165141 None:intergenic 40.0%
GTGTGTGAGAGTAAAACTCA+TGG - chr4.1:36164463-36164482 None:intergenic 40.0%
TACAAATTGAAGGTGAAGCC+AGG + chr4.1:36165716-36165735 MS.gene41139:CDS 40.0%
TCGAATTGTTGTACGAGAAG+GGG + chr4.1:36164237-36164256 MS.gene41139:CDS 40.0%
TCTAGCTAGCATGTAGAATG+TGG - chr4.1:36165933-36165952 None:intergenic 40.0%
TCTGATGCCTACACCATTAA+TGG + chr4.1:36165128-36165147 MS.gene41139:CDS 40.0%
TGGTCCAAGTATGATGGTAT+TGG - chr4.1:36165861-36165880 None:intergenic 40.0%
TGGTTAAGAGCTACTGTCTA+TGG + chr4.1:36164758-36164777 MS.gene41139:CDS 40.0%
TTCACCATTGTTGGACAAAG+AGG + chr4.1:36164707-36164726 MS.gene41139:CDS 40.0%
TTTGATGTGCACCTTAGTTG+GGG + chr4.1:36167119-36167138 MS.gene41139:CDS 40.0%
! AAAAGCATGGTTACCGTGAA+TGG + chr4.1:36164199-36164218 MS.gene41139:CDS 40.0%
! AGGGGACAGATTATTGGTTA+AGG + chr4.1:36164255-36164274 MS.gene41139:CDS 40.0%
! ATGATGGTATTGGACTCGAA+TGG - chr4.1:36165851-36165870 None:intergenic 40.0%
! ATTTTCCGGTTGTACCGTTA+AGG + chr4.1:36166350-36166369 MS.gene41139:CDS 40.0%
!! CCTTTGGAGCAATTGTAAAG+AGG - chr4.1:36165164-36165183 None:intergenic 40.0%
!! GGAGGAGGCAATTTTTGATT+AGG - chr4.1:36167182-36167201 None:intergenic 40.0%
!! GGGCATTGAGTTATGTATGA+TGG - chr4.1:36164656-36164675 None:intergenic 40.0%
!! TACACCATTAATGGGTTTCC+TGG + chr4.1:36165137-36165156 MS.gene41139:CDS 40.0%
!! TGTTGGAGAAGTGCTATAGA+AGG - chr4.1:36166295-36166314 None:intergenic 40.0%
!!! CAAGTTTGGTTTTTTGGGCA+TGG - chr4.1:36166205-36166224 None:intergenic 40.0%
!!! GGAAGCACAGGTTTTAGAAT+AGG - chr4.1:36166049-36166068 None:intergenic 40.0%
!!! GTTTTGGCTACTTCACAACA+TGG + chr4.1:36163965-36163984 MS.gene41139:CDS 40.0%
AAAATTGCCTCCTCCTCCTA+AGG + chr4.1:36167187-36167206 MS.gene41139:CDS 45.0%
AAGATGCATCTGCTTCGACA+AGG - chr4.1:36165820-36165839 None:intergenic 45.0%
AAGGAAGTCCCCATTCTCTT+TGG + chr4.1:36164836-36164855 MS.gene41139:CDS 45.0%
AATACTGTTGCTGTGCCTTC+TGG + chr4.1:36166613-36166632 MS.gene41139:CDS 45.0%
AATCACCTGGATTGTCAGCA+AGG - chr4.1:36166660-36166679 None:intergenic 45.0%
ACAACTTCGTAGTGGTTGGT+CGG + chr4.1:36164625-36164644 MS.gene41139:CDS 45.0%
ACGAGAAGGGGACAGATTAT+TGG + chr4.1:36164249-36164268 MS.gene41139:CDS 45.0%
AGAATGGGGACTTCCTTGTA+GGG - chr4.1:36164833-36164852 None:intergenic 45.0%
AGACCATATTTCACAGGGCA+GGG + chr4.1:36165950-36165969 MS.gene41139:CDS 45.0%
AGGTCCAGGAAACCCATTAA+TGG - chr4.1:36165144-36165163 None:intergenic 45.0%
ATTCATTGTGCCTTGGGAGA+AGG - chr4.1:36164793-36164812 None:intergenic 45.0%
CAACATTTGGGGAGATCCTT+AGG - chr4.1:36167206-36167225 None:intergenic 45.0%
CAGAACCATAGTCAATCACC+TGG - chr4.1:36166673-36166692 None:intergenic 45.0%
CCTCGAATTGTTGTACGAGA+AGG + chr4.1:36164235-36164254 MS.gene41139:CDS 45.0%
CCTTCTCGTACAACAATTCG+AGG - chr4.1:36164238-36164257 None:intergenic 45.0%
GACAAAGAGGAACTCTCTTC+TGG + chr4.1:36164720-36164739 MS.gene41139:CDS 45.0%
GAGCAATTGTAAAGAGGTCC+AGG - chr4.1:36165158-36165177 None:intergenic 45.0%
GCAACAGTATTCCTCTCAAC+AGG - chr4.1:36166604-36166623 None:intergenic 45.0%
GCTTGTGCAATTACAGCTTC+AGG - chr4.1:36165080-36165099 None:intergenic 45.0%
TAAGGTTGGCAAAGGTTACG+AGG + chr4.1:36164164-36164183 MS.gene41139:CDS 45.0%
TAGACCATATTTCACAGGGC+AGG + chr4.1:36165949-36165968 MS.gene41139:CDS 45.0%
TCTGCAGATAAGGTTGGCAA+AGG + chr4.1:36164156-36164175 MS.gene41139:intron 45.0%
TCTGGCATGCTCATTTCTCA+TGG + chr4.1:36164738-36164757 MS.gene41139:CDS 45.0%
TGAGACAACTTCGTAGTGGT+TGG + chr4.1:36164621-36164640 MS.gene41139:CDS 45.0%
TTCGACAATTCCACAGTAGC+TGG + chr4.1:36165977-36165996 MS.gene41139:CDS 45.0%
TTGACCTGGTCCAAGTATGA+TGG - chr4.1:36165867-36165886 None:intergenic 45.0%
! ATGGCTTGGATTGTTGAGGA+TGG + chr4.1:36167149-36167168 MS.gene41139:CDS 45.0%
!! AACCTCCCCTGGATTTGTTT+TGG + chr4.1:36163949-36163968 MS.gene41139:CDS 45.0%
!! CGGTAACCATGCTTTTTGTG+TGG - chr4.1:36164195-36164214 None:intergenic 45.0%
!! GGCACATTTGCAGGGTATTT+TGG - chr4.1:36166133-36166152 None:intergenic 45.0%
!! TGGACTAGTTCCTAGTCCAA+CGG - chr4.1:36166185-36166204 None:intergenic 45.0%
!! ATAAATAATTTATTATACTT+TGG + chr4.1:36164895-36164914 MS.gene41139:intron 5.0%
!! TAAAATATTATTAATTAAAG+TGG - chr4.1:36165512-36165531 None:intergenic 5.0%
AACGGCCTTAACGGTACAAC+CGG - chr4.1:36166358-36166377 None:intergenic 50.0%
ACAAGCTGCACGTGTACCTT+TGG - chr4.1:36165180-36165199 None:intergenic 50.0%
AGCCAAAACAAATCCAGGGG+AGG - chr4.1:36163954-36163973 None:intergenic 50.0%
ATTGCACAAGCTCTGCAGAC+AGG + chr4.1:36165089-36165108 MS.gene41139:CDS 50.0%
CAAATCCAGGGGAGGTTAAG+AGG - chr4.1:36163946-36163965 None:intergenic 50.0%
CATTTGGGGAGATCCTTAGG+AGG - chr4.1:36167203-36167222 None:intergenic 50.0%
CCATCCTCAATCCCCAACTA+AGG - chr4.1:36167133-36167152 None:intergenic 50.0%
CCTTAGTTGGGGATTGAGGA+TGG + chr4.1:36167130-36167149 MS.gene41139:CDS 50.0%
CGATTCCTTGCTGACAATCC+AGG + chr4.1:36166652-36166671 MS.gene41139:CDS 50.0%
CGTACAACAATTCGAGGACC+CGG - chr4.1:36164232-36164251 None:intergenic 50.0%
GAGAATGGGGACTTCCTTGT+AGG - chr4.1:36164834-36164853 None:intergenic 50.0%
GCTGTGCCACACAAAAAGCA+TGG + chr4.1:36164186-36164205 MS.gene41139:CDS 50.0%
GGTGTGAGACAACTTCGTAG+TGG + chr4.1:36164617-36164636 MS.gene41139:CDS 50.0%
GTACAACAATTCGAGGACCC+GGG - chr4.1:36164231-36164250 None:intergenic 50.0%
GTACCCTGCCCTGTGAAATA+TGG - chr4.1:36165956-36165975 None:intergenic 50.0%
TACCGTGAATGGGAAGTTCC+CGG + chr4.1:36164210-36164229 MS.gene41139:CDS 50.0%
TGCACCTTAGTTGGGGATTG+AGG + chr4.1:36167126-36167145 MS.gene41139:CDS 50.0%
TTGCACAAGCTCTGCAGACA+GGG + chr4.1:36165090-36165109 MS.gene41139:CDS 50.0%
! GAGGATGGCTTGGATTGTTG+AGG + chr4.1:36167145-36167164 MS.gene41139:CDS 50.0%
! TCATTGATGGCTGGAAGCAC+AGG - chr4.1:36166061-36166080 None:intergenic 50.0%
ACCCGGGAACTTCCCATTCA+CGG - chr4.1:36164215-36164234 None:intergenic 55.0%
ACCGTGAATGGGAAGTTCCC+GGG + chr4.1:36164211-36164230 MS.gene41139:CDS 55.0%
ACCTTCCTCTTAACCTCCCC+TGG + chr4.1:36163938-36163957 MS.gene41139:CDS 55.0%
ACTGTTGCTGTGCCTTCTGG+TGG + chr4.1:36166616-36166635 MS.gene41139:CDS 55.0%
AGGGGAGGTTAAGAGGAAGG+TGG - chr4.1:36163939-36163958 None:intergenic 55.0%
GACCTCTCATCCTTCTCCCA+AGG + chr4.1:36164780-36164799 MS.gene41139:CDS 55.0%
GTTGGGGATTGAGGATGGCT+TGG + chr4.1:36167135-36167154 MS.gene41139:CDS 55.0%
TCCAGGGGAGGTTAAGAGGA+AGG - chr4.1:36163942-36163961 None:intergenic 55.0%
TGCACAAGCTCTGCAGACAG+GGG + chr4.1:36165091-36165110 MS.gene41139:CDS 55.0%
TGCCTTGGGAGAAGGATGAG+AGG - chr4.1:36164785-36164804 None:intergenic 55.0%
TGCTGTGCCTTCTGGTGGTT+GGG + chr4.1:36166621-36166640 MS.gene41139:CDS 55.0%
TTGCTGTGCCTTCTGGTGGT+TGG + chr4.1:36166620-36166639 MS.gene41139:CDS 55.0%
TTGGGGAGATCCTTAGGAGG+AGG - chr4.1:36167200-36167219 None:intergenic 55.0%
! CTTCGTAGTGGTTGGTCGGA+TGG + chr4.1:36164629-36164648 MS.gene41139:CDS 55.0%
ATCGCGACCCAACCACCAGA+AGG - chr4.1:36166631-36166650 None:intergenic 60.0%
GCACAAGCTCTGCAGACAGG+GGG + chr4.1:36165092-36165111 MS.gene41139:CDS 60.0%
GGGAGATCCTTAGGAGGAGG+AGG - chr4.1:36167197-36167216 None:intergenic 60.0%
CAAGCTCTGCAGACAGGGGG+TGG + chr4.1:36165095-36165114 MS.gene41139:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 36163869 36167226 36163869 ID=MS.gene41139
chr4.1 mRNA 36163869 36167226 36163869 ID=MS.gene41139.t1;Parent=MS.gene41139
chr4.1 exon 36163869 36164015 36163869 ID=MS.gene41139.t1.exon1;Parent=MS.gene41139.t1
chr4.1 CDS 36163869 36164015 36163869 ID=cds.MS.gene41139.t1;Parent=MS.gene41139.t1
chr4.1 exon 36164163 36164314 36164163 ID=MS.gene41139.t1.exon2;Parent=MS.gene41139.t1
chr4.1 CDS 36164163 36164314 36164163 ID=cds.MS.gene41139.t1;Parent=MS.gene41139.t1
chr4.1 exon 36164613 36164857 36164613 ID=MS.gene41139.t1.exon3;Parent=MS.gene41139.t1
chr4.1 CDS 36164613 36164857 36164613 ID=cds.MS.gene41139.t1;Parent=MS.gene41139.t1
chr4.1 exon 36165057 36165182 36165057 ID=MS.gene41139.t1.exon4;Parent=MS.gene41139.t1
chr4.1 CDS 36165057 36165182 36165057 ID=cds.MS.gene41139.t1;Parent=MS.gene41139.t1
chr4.1 exon 36165711 36166673 36165711 ID=MS.gene41139.t1.exon5;Parent=MS.gene41139.t1
chr4.1 CDS 36165711 36166673 36165711 ID=cds.MS.gene41139.t1;Parent=MS.gene41139.t1
chr4.1 exon 36167096 36167226 36167096 ID=MS.gene41139.t1.exon6;Parent=MS.gene41139.t1
chr4.1 CDS 36167096 36167226 36167096 ID=cds.MS.gene41139.t1;Parent=MS.gene41139.t1
Gene Sequence

>MS.gene41139

ATGCATATCAAAATGATTGTCACTGTTCCATTATCAAAGGCTCTTTTTGCAGCTTTTCTCTTTGTCACCACCTTCCTCTTAACCTCCCCTGGATTTGTTTTGGCTACTTCACAACATGGAAGTGTTACAAGACACTACAAATTTGATGTATATACACTTTATATTATATAAATTAATTCCTTTCAAATATTTATCACTTAATTAATTAACTTAAAACCTACCAAATTGTATAACATATGTAGTGTAAGAAAAAAAAAGTTTTATAGTATATCATTGTTTTTATTATTTCTGCAGATAAGGTTGGCAAAGGTTACGAGGCTGTGCCACACAAAAAGCATGGTTACCGTGAATGGGAAGTTCCCGGGTCCTCGAATTGTTGTACGAGAAGGGGACAGATTATTGGTTAAGGTTGTTAATCATGTTCCAAACAATATCAGCCTGCATTGGTAAGAACTATTTTTTTTAATTATTTTTAATTTTTCACATTTTTTTCAAAGAGCCTAATTAACTGCAAAACTCACAAAAACTAAGTGTTGAGAAAATAGGATTTGAACTGGCGCCCAAGCATATCAAATGTCGTTGTAGTTTTCACCATGAGTTTTACTCTCACACACACGCAATTTTTTTTTACATTTATATTGTATGTTGTACATCATGGATCTAGTTAGGATATCCATATGCATGAAATGAATTATTGTACTAATATTGACAATAATGGTGAATGCATGCATGATAAAAAAACAGGCATGGTGTGAGACAACTTCGTAGTGGTTGGTCGGATGGTCCATCATACATAACTCAATGCCCAATTCAAACAGGTCAGAGTTATGTGTACAACTTCACCATTGTTGGACAAAGAGGAACTCTCTTCTGGCATGCTCATTTCTCATGGTTAAGAGCTACTGTCTATGGACCTCTCATCCTTCTCCCAAGGCACAATGAATCTTATCCTTTTCAAAAACCCTACAAGGAAGTCCCCATTCTCTTTGGTACATATGAACAATCATTCCTCAGTATAAATTTATAATAAATAATTTATTATACTTTGGTATTTTATATTTCTAGCTGGAGTTTATACTTTTTTAAGGAAAGATATAATAAAGATATTTTTTTTATTTTACAAAAAAATAGTATATGATATGAAAGGTTTTGTAATCTTATACACATATCTTTGACAAATATGCATAGGTGAGTGGTGGAATGCAGATCCTGAAGCTGTAATTGCACAAGCTCTGCAGACAGGGGGTGGCCCAAATGTTTCTGATGCCTACACCATTAATGGGTTTCCTGGACCTCTTTACAATTGCTCCAAAGGTACACGTGCAGCTTGTATATAACTGGCATTTCTAGTTATTTGTTTTTAATTAAGAACTAAATAAATTTTGTACATTTAATGTAATTTTTATATATATATATATATATATATATATATATATATATATATATATTTAACATAACAAAGTGATATGATACTAAAATGTGATTTAATTGAATTTATGTTTAAAAAAGTTCTACATAGTTAAAGAGTTTTTTTTTTCTTTCTCAATTCATTAAATAGAAGTAAATTGATTATATGCTGTTTATTTAGCTTAATTTCGTGTATAAATAACACAATATCTTACAAGTTGCTTTGCTTAACACCACTTTAATTAATAATATTTTATTTTATTTTATTAGAGAAAAAACCAAGTTCCACTTAGGATAAAGAAAATGTTTGAAATGAATTTATAAATAGTGACACCTCTCATTTTACAAACTAATTTGTAAAAATCGAGTTAGATAAATTGACGAATAATGACTAGAATTGATGAATTGATTGGTTTGTTATCATATCATGGACAGATACATACAAATTGAAGGTGAAGCCAGGAAAAACATATCTATTACGTTTGATCAACGCTGCACTCAACGACGAACTCTTTTTCAGCATTGCTAATCACACATTAATCCTTGTCGAAGCAGATGCATCTTACATTAAACCATTCGAGTCCAATACCATCATACTTGGACCAGGTCAAACCACAAATGTTCTATTAAAAACTAAACCAAATTACCCAAATGCCACATTCTACATGCTAGCTAGACCATATTTCACAGGGCAGGGTACTTTCGACAATTCCACAGTAGCTGGAATTTTAGAATACACTAAACCAAATGATCAAACAAATAAAAATCTCCCTATTCTAAAACCTGTGCTTCCAGCCATCAATGATACTAATTTTGTTGCTAATTTTAGTAACAAATTTCTTAGCTTAAATAGTCCAAAATACCCTGCAAATGTGCCTAAAACTATTGACAAAAACTTTTTCTTTACCGTTGGACTAGGAACTAGTCCATGCCCAAAAAACCAAACTTGTCAAGGACCAAATAATAGTTCAAATTCAAAATTTGCAGCTTCAATGAACAATGTATCATTTGCTTTACCTTCTATAGCACTTCTCCAACAACATTTCTTTGGAACTAATAATGGTTTTACAACGGATTTTCCGGTTGTACCGTTAAGGCCGTTTAACTATACAGGAACTCCTCCAAACAATACTTTGGTTAGTAATGGAACAAAGACAGTGGTGATACCATATAACACTAGAGTTCAGGTTATATTGCAGGATACAAGCATTTTGGGAGCTGAGAGTCATCCTTTGCATCTTCATGGATTTAATTTCTTTGTTGTTGGTCAAGGTTTTGGAAATTTTAATGCTAGTAGTGACCCTGCAAAGTTTAATCTTGTTGATCCTGTTGAGAGGAATACTGTTGCTGTGCCTTCTGGTGGTTGGGTCGCGATACGATTCCTTGCTGACAATCCAGGTGATTGACTATGGTTCTGTTTGGATAATCAGCTTAATTAAGCACTTATATCACAAGCACTTGTCATATAAGCGTTTATGTATAGCTATTTCTATAAAAAATGACAAAAAAGTCAAACTGTTTTTATATAAGCTATAAACTATTTTCATAAACTATCCTGGAGAACTTACGAAAATAAGTTAAAAACAATGTCGTAAGTTGTTTTCAATTTATTTTATAAGCTCTTCTAAACAGTCTTACAAGTGTTTATGCCAACAGATCAGCTTAAATAAGTCAATCCAAATATTATATATCATATAGTTTTTCTTATCTTGTATCTCAAGTTATTTATATGATACTTTGATCACTTTAATTATAAAGCATATAATGAATTAATTAGACTTTTTTTTGATCTATTTGCTATGAATGTATGGTTGAAACAGGTGTTTGGCTGATGCATTGCCACTTTGATGTGCACCTTAGTTGGGGATTGAGGATGGCTTGGATTGTTGAGGATGGAAAGTTACCTAATCAAAAATTGCCTCCTCCTCCTAAGGATCTCCCCAAATGTTGA
Protein sequence

>MS.gene41139.t1

MHIKMIVTVPLSKALFAAFLFVTTFLLTSPGFVLATSQHGSVTRHYKFDIRLAKVTRLCHTKSMVTVNGKFPGPRIVVREGDRLLVKVVNHVPNNISLHWHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLRATVYGPLILLPRHNESYPFQKPYKEVPILFGEWWNADPEAVIAQALQTGGGPNVSDAYTINGFPGPLYNCSKDTYKLKVKPGKTYLLRLINAALNDELFFSIANHTLILVEADASYIKPFESNTIILGPGQTTNVLLKTKPNYPNATFYMLARPYFTGQGTFDNSTVAGILEYTKPNDQTNKNLPILKPVLPAINDTNFVANFSNKFLSLNSPKYPANVPKTIDKNFFFTVGLGTSPCPKNQTCQGPNNSSNSKFAASMNNVSFALPSIALLQQHFFGTNNGFTTDFPVVPLRPFNYTGTPPNNTLVSNGTKTVVIPYNTRVQVILQDTSILGAESHPLHLHGFNFFVVGQGFGNFNASSDPAKFNLVDPVERNTVAVPSGGWVAIRFLADNPGVWLMHCHFDVHLSWGLRMAWIVEDGKLPNQKLPPPPKDLPKC