Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023122.t1 | XP_013457325.1 | 97.3 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 1.40E-208 | 735.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023122.t1 | A0A072UPV1 | 97.3 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 1.0e-208 | 735.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023122 | MS.gene014442 | PPI |
| MS.gene023122 | MS.gene64194 | PPI |
| MS.gene023122 | MS.gene27044 | PPI |
| MS.gene023122 | MS.gene63991 | PPI |
| MS.gene023122 | MS.gene24186 | PPI |
| MS.gene023122 | MS.gene069406 | PPI |
| MS.gene42277 | MS.gene023122 | PPI |
| MS.gene023122 | MS.gene064739 | PPI |
| MS.gene023122 | MS.gene69420 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023122.t1 | MTR_4g094572 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| MS.gene023122.t1 | MTR_5g077710 | 43.144 | 299 | 148 | 7 | 91 | 375 | 94 | 384 | 1.07e-78 | 247 |
| MS.gene023122.t1 | MTR_2g028590 | 40.604 | 298 | 156 | 7 | 91 | 375 | 174 | 463 | 3.29e-76 | 243 |
| MS.gene023122.t1 | MTR_2g028610 | 42.088 | 297 | 151 | 8 | 92 | 375 | 170 | 458 | 7.40e-76 | 242 |
| MS.gene023122.t1 | MTR_1g024005 | 32.692 | 416 | 226 | 8 | 4 | 375 | 19 | 424 | 1.03e-73 | 235 |
| MS.gene023122.t1 | MTR_3g113270 | 32.117 | 411 | 230 | 10 | 4 | 375 | 19 | 419 | 1.31e-70 | 227 |
| MS.gene023122.t1 | MTR_0010s0400 | 41.096 | 292 | 151 | 7 | 92 | 374 | 177 | 456 | 4.65e-62 | 206 |
| MS.gene023122.t1 | MTR_8g028460 | 38.158 | 304 | 161 | 8 | 89 | 374 | 191 | 485 | 5.55e-59 | 199 |
| MS.gene023122.t1 | MTR_3g071050 | 37.647 | 170 | 89 | 5 | 89 | 248 | 103 | 265 | 3.24e-29 | 114 |
| MS.gene023122.t1 | MTR_3g070620 | 39.130 | 138 | 72 | 4 | 178 | 313 | 62 | 189 | 9.13e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023122.t1 | AT1G29790 | 67.008 | 391 | 92 | 8 | 7 | 377 | 5 | 378 | 0.0 | 516 |
| MS.gene023122.t1 | AT1G29790 | 67.008 | 391 | 92 | 8 | 7 | 377 | 5 | 378 | 0.0 | 516 |
| MS.gene023122.t1 | AT5G40830 | 34.230 | 409 | 215 | 11 | 4 | 374 | 19 | 411 | 3.78e-73 | 234 |
| MS.gene023122.t1 | AT5G40830 | 34.230 | 409 | 215 | 11 | 4 | 374 | 19 | 411 | 3.78e-73 | 234 |
| MS.gene023122.t1 | AT3G27230 | 33.580 | 405 | 221 | 9 | 4 | 375 | 19 | 408 | 3.51e-70 | 226 |
| MS.gene023122.t1 | AT5G40830 | 33.251 | 403 | 187 | 10 | 4 | 374 | 19 | 371 | 1.53e-67 | 218 |
| MS.gene023122.t1 | AT3G05390 | 40.753 | 292 | 152 | 7 | 92 | 374 | 180 | 459 | 7.27e-66 | 216 |
| MS.gene023122.t1 | AT4G01240 | 36.964 | 303 | 165 | 7 | 89 | 374 | 361 | 654 | 2.09e-57 | 198 |
Find 103 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTGATTCCTCTGTTATC+TGG | 0.165102 | 4.3:+19216701 | MS.gene023122:CDS |
| TAAGCCTTTGATTGCGAAAA+TGG | 0.167124 | 4.3:+19217224 | MS.gene023122:CDS |
| GGGATTGGTGGAAGTGGTTT+TGG | 0.169419 | 4.3:-19216334 | None:intergenic |
| TGGTGTTAGGGTTGGTGTTT+TGG | 0.217335 | 4.3:-19216417 | None:intergenic |
| CTTGATGTTGGTGGTGGTAC+TGG | 0.282533 | 4.3:+19216895 | MS.gene023122:CDS |
| GAGGCGCGTGAGGTGGTTAA+TGG | 0.310317 | 4.3:-19216395 | None:intergenic |
| CTCGATTTGTCCTTCTGATT+CGG | 0.339448 | 4.3:+19216555 | MS.gene023122:CDS |
| TGGTTGCTACCATTGCTATT+AGG | 0.349162 | 4.3:-19216261 | None:intergenic |
| CAGTGAGGCGGTTGCGTTAA+GGG | 0.357505 | 4.3:+19216990 | MS.gene023122:CDS |
| GATCGCGAAATCAGCGAAAT+CGG | 0.372554 | 4.3:+19216858 | MS.gene023122:CDS |
| ATCTGAAGAAGCTGTTGAAC+TGG | 0.377068 | 4.3:-19216838 | None:intergenic |
| ACCTGATTCCTCTGTTATCT+GGG | 0.386515 | 4.3:+19216702 | MS.gene023122:CDS |
| GGCGGTGAATCGATGGATTC+CGG | 0.389269 | 4.3:+19217092 | MS.gene023122:CDS |
| TTGGACGGAGTTTGTTTCTT+CGG | 0.393300 | 4.3:-19216646 | None:intergenic |
| AAGAAAGTGAAGTGGGCAAC+GGG | 0.410418 | 4.3:+19217252 | MS.gene023122:CDS |
| TGAGAGGTGGAGGGTATTTG+TGG | 0.411452 | 4.3:+19217157 | MS.gene023122:CDS |
| GAGTAGATCTGAAGGGATTG+AGG | 0.412355 | 4.3:-19216449 | None:intergenic |
| GAAGGTTCAAATCCGAGATC+AGG | 0.415306 | 4.3:-19216769 | None:intergenic |
| ACAGTGAGGCGGTTGCGTTA+AGG | 0.420442 | 4.3:+19216989 | MS.gene023122:CDS |
| ATGTACTTGTGAAGAAGATC+AGG | 0.423383 | 4.3:-19216517 | None:intergenic |
| CAGCGGTTACCGATGTTTGA+TGG | 0.424081 | 4.3:+19217042 | MS.gene023122:CDS |
| CGGAGGAGTTCGTCGGGGAT+TGG | 0.428015 | 4.3:-19216349 | None:intergenic |
| TTACGGCTGGGGCTTGATGT+TGG | 0.437399 | 4.3:+19216883 | MS.gene023122:CDS |
| AAACAACGCCGGCGAGGGAG+AGG | 0.443660 | 4.3:-19216613 | None:intergenic |
| GAGTAGAGGAGTAGATCTGA+AGG | 0.444596 | 4.3:-19216457 | None:intergenic |
| CCATTGCTATTAGGAGAAGA+AGG | 0.457866 | 4.3:-19216252 | None:intergenic |
| CGGCTGGGGCTTGATGTTGG+TGG | 0.458823 | 4.3:+19216886 | MS.gene023122:CDS |
| TCAGGTAAGGAAGAAGGAAA+AGG | 0.465159 | 4.3:-19216685 | None:intergenic |
| AAGCCTTTGATTGCGAAAAT+GGG | 0.467826 | 4.3:+19217225 | MS.gene023122:CDS |
| AACGCAACCGCCTCACTGTA+AGG | 0.473749 | 4.3:-19216985 | None:intergenic |
| ATCGGTAACCGCTGCTGCAA+CGG | 0.476365 | 4.3:-19217033 | None:intergenic |
| TGGTGGTACTGGCTCATTTG+CGG | 0.479932 | 4.3:+19216906 | MS.gene023122:CDS |
| CAGGTAAGGAAGAAGGAAAA+GGG | 0.483236 | 4.3:-19216684 | None:intergenic |
| GTGGGAGGGCGGTGAATCGA+TGG | 0.484047 | 4.3:+19217085 | MS.gene023122:CDS |
| AACCGTCAAAACCCTGATCT+CGG | 0.488287 | 4.3:+19216757 | MS.gene023122:CDS |
| AGTTGACGGAGGAGTTCGTC+GGG | 0.488936 | 4.3:-19216355 | None:intergenic |
| GCTGAAAGCTTAATTCTTCG+CGG | 0.489356 | 4.3:+19216583 | MS.gene023122:CDS |
| TCCCAGATAACAGAGGAATC+AGG | 0.491176 | 4.3:-19216703 | None:intergenic |
| TTTAGGGGATTGGAGAGTTG+TGG | 0.496838 | 4.3:-19216308 | None:intergenic |
| ATTGGAGAGTTGTGGAGAGG+TGG | 0.498315 | 4.3:-19216300 | None:intergenic |
| GTGGTAGAGAGAGAGAATGT+TGG | 0.507068 | 4.3:-19216281 | None:intergenic |
| TCGTCGGGGATTGGTGGAAG+TGG | 0.507708 | 4.3:-19216340 | None:intergenic |
| GAGGAATCAGGTAAGGAAGA+AGG | 0.511266 | 4.3:-19216691 | None:intergenic |
| AGGAGTTCGTCGGGGATTGG+TGG | 0.516755 | 4.3:-19216346 | None:intergenic |
| GATAGAGTGTTGAGAGGTGG+AGG | 0.517077 | 4.3:+19217147 | MS.gene023122:CDS |
| CTGGGGCTTGATGTTGGTGG+TGG | 0.522249 | 4.3:+19216889 | MS.gene023122:CDS |
| ATGGTGTCGTGGATATTGTT+CGG | 0.522500 | 4.3:+19217061 | MS.gene023122:CDS |
| ATGGATTCCGGTGACGATGT+TGG | 0.523220 | 4.3:+19217104 | MS.gene023122:CDS |
| TTGGTGAGAGGTGTGAGTAG+AGG | 0.528167 | 4.3:-19216471 | None:intergenic |
| ACGGGGAATAAGACTGATGC+TGG | 0.528181 | 4.3:+19217270 | MS.gene023122:CDS |
| TCGTGGATATTGTTCGGTGT+GGG | 0.528274 | 4.3:+19217067 | MS.gene023122:CDS |
| AGGTGGAGGGTATTTGTGGT+TGG | 0.528302 | 4.3:+19217161 | MS.gene023122:CDS |
| CGCGTATAGTGTGAAGTTGA+CGG | 0.530863 | 4.3:-19216369 | None:intergenic |
| AGTAGAGGAGTAGATCTGAA+GGG | 0.535223 | 4.3:-19216456 | None:intergenic |
| TGCTGCAACGGAACATGAAG+CGG | 0.536548 | 4.3:-19217021 | None:intergenic |
| GGATATTGTTCGGTGTGGGA+GGG | 0.536790 | 4.3:+19217071 | MS.gene023122:CDS |
| TTATGACAAGAAGAAGCAAT+TGG | 0.537441 | 4.3:-19216490 | None:intergenic |
| TTGCGGCGGCGATGAAAGTA+CGG | 0.539661 | 4.3:+19216923 | MS.gene023122:CDS |
| GATAACAGAGGAATCAGGTA+AGG | 0.541159 | 4.3:-19216698 | None:intergenic |
| TGGATATTGTTCGGTGTGGG+AGG | 0.543086 | 4.3:+19217070 | MS.gene023122:CDS |
| GAGAAGAAGGTTTAGTGTCA+TGG | 0.552063 | 4.3:-19216239 | None:intergenic |
| GAGAGAAACAACGCCGGCGA+GGG | 0.553700 | 4.3:-19216618 | None:intergenic |
| AAGGTTCAAATCCGAGATCA+GGG | 0.554632 | 4.3:-19216768 | None:intergenic |
| TATTGTTCGGTGTGGGAGGG+CGG | 0.561682 | 4.3:+19217074 | MS.gene023122:CDS |
| AGTGAGGCGGTTGCGTTAAG+GGG | 0.563157 | 4.3:+19216991 | MS.gene023122:CDS |
| TCTGAAGAAGCTGTTGAACT+GGG | 0.564387 | 4.3:-19216837 | None:intergenic |
| TTCATGTTCCGTTGCAGCAG+CGG | 0.564533 | 4.3:+19217025 | MS.gene023122:CDS |
| GGGTTACAAGAAAGTGAAGT+GGG | 0.565136 | 4.3:+19217245 | MS.gene023122:CDS |
| GGAGTTTGTTTCTTCGGCGT+CGG | 0.566366 | 4.3:-19216640 | None:intergenic |
| CAAGAAAGTGAAGTGGGCAA+CGG | 0.572632 | 4.3:+19217251 | MS.gene023122:CDS |
| GTTGTCATCCTCTCCCTCGC+CGG | 0.574392 | 4.3:+19216605 | MS.gene023122:CDS |
| AACTTAGAAACTTCACGAGA+AGG | 0.584495 | 4.3:-19216787 | None:intergenic |
| GATGTTGATAGAGTGTTGAG+AGG | 0.584870 | 4.3:+19217141 | MS.gene023122:CDS |
| CCTTCTTCTCCTAATAGCAA+TGG | 0.585257 | 4.3:+19216252 | MS.gene023122:CDS |
| AAGTTGACGGAGGAGTTCGT+CGG | 0.588114 | 4.3:-19216356 | None:intergenic |
| GTCGTGGATATTGTTCGGTG+TGG | 0.593818 | 4.3:+19217066 | MS.gene023122:CDS |
| GGGATTGGAGAGTTGTGGAG+AGG | 0.598949 | 4.3:-19216303 | None:intergenic |
| GATGAAAGTACGGAATGTTA+CGG | 0.601069 | 4.3:+19216933 | MS.gene023122:CDS |
| GCGCGTGAGGTGGTTAATGG+TGG | 0.606953 | 4.3:-19216392 | None:intergenic |
| TCAGCGAGCTCCGAATCAGA+AGG | 0.610853 | 4.3:-19216565 | None:intergenic |
| ACCGATGTTTGATGGTGTCG+TGG | 0.615004 | 4.3:+19217050 | MS.gene023122:CDS |
| TGACTCTCTCATCTTGAGAG+AGG | 0.623166 | 4.3:-19217339 | None:intergenic |
| GATGCTGGTGGTGTTAAGCA+TGG | 0.624372 | 4.3:+19217285 | MS.gene023122:CDS |
| GGAGAGAAACAACGCCGGCG+AGG | 0.631888 | 4.3:-19216619 | None:intergenic |
| GTTGATAGAGTGTTGAGAGG+TGG | 0.635445 | 4.3:+19217144 | MS.gene023122:CDS |
| AAGAAGAAGCAATTGGTGAG+AGG | 0.636322 | 4.3:-19216483 | None:intergenic |
| ATAGAGTGTTGAGAGGTGGA+GGG | 0.639182 | 4.3:+19217148 | MS.gene023122:CDS |
| ACAAATCGAGAACGGTGTGT+AGG | 0.640075 | 4.3:-19216542 | None:intergenic |
| TGGGTTACAAGAAAGTGAAG+TGG | 0.640685 | 4.3:+19217244 | MS.gene023122:CDS |
| TCAGAAGGACAAATCGAGAA+CGG | 0.666336 | 4.3:-19216550 | None:intergenic |
| TCCACGACACCATCAAACAT+CGG | 0.670096 | 4.3:-19217051 | None:intergenic |
| TGGTACTGGCTCATTTGCGG+CGG | 0.680808 | 4.3:+19216909 | MS.gene023122:CDS |
| TGTACTTGTGAAGAAGATCA+GGG | 0.686850 | 4.3:-19216516 | None:intergenic |
| TGTAGCGCCTTACAGTGAGG+CGG | 0.694193 | 4.3:+19216978 | MS.gene023122:CDS |
| TGTTGTAGCGCCTTACAGTG+AGG | 0.710000 | 4.3:+19216975 | MS.gene023122:CDS |
| GAAAGTACGGAATGTTACGG+TGG | 0.724848 | 4.3:+19216936 | MS.gene023122:CDS |
| GCGTCGGAGAGAAACAACGC+CGG | 0.732120 | 4.3:-19216624 | None:intergenic |
| ATAACGATCCCAGATAACAG+AGG | 0.735131 | 4.3:-19216710 | None:intergenic |
| GTTGACGGAGGAGTTCGTCG+GGG | 0.738259 | 4.3:-19216354 | None:intergenic |
| AGAAAGTGAAGTGGGCAACG+GGG | 0.746580 | 4.3:+19217253 | MS.gene023122:CDS |
| GTATAGTGTGAAGTTGACGG+AGG | 0.747585 | 4.3:-19216366 | None:intergenic |
| GGGAATAAGACTGATGCTGG+TGG | 0.762122 | 4.3:+19217273 | MS.gene023122:CDS |
| ACTTGTGAAGAAGATCAGGG+TGG | 0.798354 | 4.3:-19216513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGACCATTTTTTTAGTAA+GGG | + | chr4.3:19217180-19217199 | MS.gene023122:CDS | 25.0% |
| TTATGACAAGAAGAAGCAAT+TGG | - | chr4.3:19216493-19216512 | None:intergenic | 30.0% | |
| !!! | GTTGGACCATTTTTTTAGTA+AGG | + | chr4.3:19217179-19217198 | MS.gene023122:CDS | 30.0% |
| AACTTAGAAACTTCACGAGA+AGG | - | chr4.3:19216790-19216809 | None:intergenic | 35.0% | |
| AAGCCTTTGATTGCGAAAAT+GGG | + | chr4.3:19217225-19217244 | MS.gene023122:CDS | 35.0% | |
| ATGTACTTGTGAAGAAGATC+AGG | - | chr4.3:19216520-19216539 | None:intergenic | 35.0% | |
| CCACACCCTTACTAAAAAAA+TGG | - | chr4.3:19217188-19217207 | None:intergenic | 35.0% | |
| TAAGCCTTTGATTGCGAAAA+TGG | + | chr4.3:19217224-19217243 | MS.gene023122:CDS | 35.0% | |
| TGTACTTGTGAAGAAGATCA+GGG | - | chr4.3:19216519-19216538 | None:intergenic | 35.0% | |
| ! | GAAGAAGGAAAAGGGTTTTT+CGG | - | chr4.3:19216679-19216698 | None:intergenic | 35.0% |
| ! | GATGAAAGTACGGAATGTTA+CGG | + | chr4.3:19216933-19216952 | MS.gene023122:CDS | 35.0% |
| ! | TAACCCATTTTCGCAATCAA+AGG | - | chr4.3:19217231-19217250 | None:intergenic | 35.0% |
| !! | AATCAGCGAAATCGGTTTTA+CGG | + | chr4.3:19216866-19216885 | MS.gene023122:CDS | 35.0% |
| !!! | AGGATTTTGTGTTGGTGTTA+GGG | - | chr4.3:19216432-19216451 | None:intergenic | 35.0% |
| !!! | CCATTTTTTTAGTAAGGGTG+TGG | + | chr4.3:19217185-19217204 | MS.gene023122:CDS | 35.0% |
| AAAAACTCCAACATCGTCAC+CGG | - | chr4.3:19217114-19217133 | None:intergenic | 40.0% | |
| AAGAAGAAGCAATTGGTGAG+AGG | - | chr4.3:19216486-19216505 | None:intergenic | 40.0% | |
| AAGGTTCAAATCCGAGATCA+GGG | - | chr4.3:19216771-19216790 | None:intergenic | 40.0% | |
| ACCTGATTCCTCTGTTATCT+GGG | + | chr4.3:19216702-19216721 | MS.gene023122:CDS | 40.0% | |
| AGTAGAGGAGTAGATCTGAA+GGG | - | chr4.3:19216459-19216478 | None:intergenic | 40.0% | |
| ATAACGATCCCAGATAACAG+AGG | - | chr4.3:19216713-19216732 | None:intergenic | 40.0% | |
| ATCTGAAGAAGCTGTTGAAC+TGG | - | chr4.3:19216841-19216860 | None:intergenic | 40.0% | |
| CAGGTAAGGAAGAAGGAAAA+GGG | - | chr4.3:19216687-19216706 | None:intergenic | 40.0% | |
| CCTTCTTCTCCTAATAGCAA+TGG | + | chr4.3:19216252-19216271 | MS.gene023122:CDS | 40.0% | |
| GAGAAGAAGGTTTAGTGTCA+TGG | - | chr4.3:19216242-19216261 | None:intergenic | 40.0% | |
| GATAACAGAGGAATCAGGTA+AGG | - | chr4.3:19216701-19216720 | None:intergenic | 40.0% | |
| GCTGAAAGCTTAATTCTTCG+CGG | + | chr4.3:19216583-19216602 | MS.gene023122:CDS | 40.0% | |
| GGGTTACAAGAAAGTGAAGT+GGG | + | chr4.3:19217245-19217264 | MS.gene023122:CDS | 40.0% | |
| TACCTGATTCCTCTGTTATC+TGG | + | chr4.3:19216701-19216720 | MS.gene023122:CDS | 40.0% | |
| TCAGAAGGACAAATCGAGAA+CGG | - | chr4.3:19216553-19216572 | None:intergenic | 40.0% | |
| TCAGGTAAGGAAGAAGGAAA+AGG | - | chr4.3:19216688-19216707 | None:intergenic | 40.0% | |
| TCTGAAGAAGCTGTTGAACT+GGG | - | chr4.3:19216840-19216859 | None:intergenic | 40.0% | |
| TGGGTTACAAGAAAGTGAAG+TGG | + | chr4.3:19217244-19217263 | MS.gene023122:CDS | 40.0% | |
| ! | AGGGATTGAGGATTTTGTGT+TGG | - | chr4.3:19216440-19216459 | None:intergenic | 40.0% |
| ! | CCATTGCTATTAGGAGAAGA+AGG | - | chr4.3:19216255-19216274 | None:intergenic | 40.0% |
| ! | CTCGATTTGTCCTTCTGATT+CGG | + | chr4.3:19216555-19216574 | MS.gene023122:CDS | 40.0% |
| ! | TGGTTGCTACCATTGCTATT+AGG | - | chr4.3:19216264-19216283 | None:intergenic | 40.0% |
| ! | TTGGACGGAGTTTGTTTCTT+CGG | - | chr4.3:19216649-19216668 | None:intergenic | 40.0% |
| !! | ATGGTGTCGTGGATATTGTT+CGG | + | chr4.3:19217061-19217080 | MS.gene023122:CDS | 40.0% |
| !! | GAGGATTTTGTGTTGGTGTT+AGG | - | chr4.3:19216433-19216452 | None:intergenic | 40.0% |
| !! | GATGTTGATAGAGTGTTGAG+AGG | + | chr4.3:19217141-19217160 | MS.gene023122:CDS | 40.0% |
| !! | TTTTTCGGAAGCGAATTGGA+CGG | - | chr4.3:19216664-19216683 | None:intergenic | 40.0% |
| !!! | AAGTGGTTTTGGGGATTTAG+GGG | - | chr4.3:19216326-19216345 | None:intergenic | 40.0% |
| !!! | GAAGTGGTTTTGGGGATTTA+GGG | - | chr4.3:19216327-19216346 | None:intergenic | 40.0% |
| !!! | TTTTGTGTTGGTGTTAGGGT+TGG | - | chr4.3:19216428-19216447 | None:intergenic | 40.0% |
| AACCGTCAAAACCCTGATCT+CGG | + | chr4.3:19216757-19216776 | MS.gene023122:CDS | 45.0% | |
| AAGAAAGTGAAGTGGGCAAC+GGG | + | chr4.3:19217252-19217271 | MS.gene023122:CDS | 45.0% | |
| ACAAATCGAGAACGGTGTGT+AGG | - | chr4.3:19216545-19216564 | None:intergenic | 45.0% | |
| ACTTGTGAAGAAGATCAGGG+TGG | - | chr4.3:19216516-19216535 | None:intergenic | 45.0% | |
| CAAGAAAGTGAAGTGGGCAA+CGG | + | chr4.3:19217251-19217270 | MS.gene023122:CDS | 45.0% | |
| CGCGTATAGTGTGAAGTTGA+CGG | - | chr4.3:19216372-19216391 | None:intergenic | 45.0% | |
| GAAGGTTCAAATCCGAGATC+AGG | - | chr4.3:19216772-19216791 | None:intergenic | 45.0% | |
| GAGGAATCAGGTAAGGAAGA+AGG | - | chr4.3:19216694-19216713 | None:intergenic | 45.0% | |
| GAGTAGAGGAGTAGATCTGA+AGG | - | chr4.3:19216460-19216479 | None:intergenic | 45.0% | |
| GAGTAGATCTGAAGGGATTG+AGG | - | chr4.3:19216452-19216471 | None:intergenic | 45.0% | |
| GATCGCGAAATCAGCGAAAT+CGG | + | chr4.3:19216858-19216877 | MS.gene023122:CDS | 45.0% | |
| GTATAGTGTGAAGTTGACGG+AGG | - | chr4.3:19216369-19216388 | None:intergenic | 45.0% | |
| GTGGTAGAGAGAGAGAATGT+TGG | - | chr4.3:19216284-19216303 | None:intergenic | 45.0% | |
| TCCACGACACCATCAAACAT+CGG | - | chr4.3:19217054-19217073 | None:intergenic | 45.0% | |
| TCCCAGATAACAGAGGAATC+AGG | - | chr4.3:19216706-19216725 | None:intergenic | 45.0% | |
| TTTAGGGGATTGGAGAGTTG+TGG | - | chr4.3:19216311-19216330 | None:intergenic | 45.0% | |
| ! | GAAAGTACGGAATGTTACGG+TGG | + | chr4.3:19216936-19216955 | MS.gene023122:CDS | 45.0% |
| !! | AGGGTTTTTCGGAAGCGAAT+TGG | - | chr4.3:19216668-19216687 | None:intergenic | 45.0% |
| !! | ATAGAGTGTTGAGAGGTGGA+GGG | + | chr4.3:19217148-19217167 | MS.gene023122:CDS | 45.0% |
| !! | ATCCGAGATCAGGGTTTTGA+CGG | - | chr4.3:19216762-19216781 | None:intergenic | 45.0% |
| !! | GATTGGTGGAAGTGGTTTTG+GGG | - | chr4.3:19216335-19216354 | None:intergenic | 45.0% |
| !! | GGATTGGTGGAAGTGGTTTT+GGG | - | chr4.3:19216336-19216355 | None:intergenic | 45.0% |
| !! | GTTGATAGAGTGTTGAGAGG+TGG | + | chr4.3:19217144-19217163 | MS.gene023122:CDS | 45.0% |
| !! | TCGTGGATATTGTTCGGTGT+GGG | + | chr4.3:19217067-19217086 | MS.gene023122:CDS | 45.0% |
| !!! | GGAAGTGGTTTTGGGGATTT+AGG | - | chr4.3:19216328-19216347 | None:intergenic | 45.0% |
| !!! | GTTTTGGGGATTTAGGGGAT+TGG | - | chr4.3:19216321-19216340 | None:intergenic | 45.0% |
| !!! | TGGTGTTAGGGTTGGTGTTT+TGG | - | chr4.3:19216420-19216439 | None:intergenic | 45.0% |
| !!! | TGTTAGGGTTGGTGTTTTGG+AGG | - | chr4.3:19216417-19216436 | None:intergenic | 45.0% |
| AAGTTGACGGAGGAGTTCGT+CGG | - | chr4.3:19216359-19216378 | None:intergenic | 50.0% | |
| ACGGGGAATAAGACTGATGC+TGG | + | chr4.3:19217270-19217289 | MS.gene023122:CDS | 50.0% | |
| AGAAAGTGAAGTGGGCAACG+GGG | + | chr4.3:19217253-19217272 | MS.gene023122:CDS | 50.0% | |
| ATGGATTCCGGTGACGATGT+TGG | + | chr4.3:19217104-19217123 | MS.gene023122:CDS | 50.0% | |
| ATTGGAGAGTTGTGGAGAGG+TGG | - | chr4.3:19216303-19216322 | None:intergenic | 50.0% | |
| CAGCGGTTACCGATGTTTGA+TGG | + | chr4.3:19217042-19217061 | MS.gene023122:CDS | 50.0% | |
| GGGAATAAGACTGATGCTGG+TGG | + | chr4.3:19217273-19217292 | MS.gene023122:CDS | 50.0% | |
| TGCTGCAACGGAACATGAAG+CGG | - | chr4.3:19217024-19217043 | None:intergenic | 50.0% | |
| TGTTGTAGCGCCTTACAGTG+AGG | + | chr4.3:19216975-19216994 | MS.gene023122:CDS | 50.0% | |
| TTCATGTTCCGTTGCAGCAG+CGG | + | chr4.3:19217025-19217044 | MS.gene023122:CDS | 50.0% | |
| ! | GATGCTGGTGGTGTTAAGCA+TGG | + | chr4.3:19217285-19217304 | MS.gene023122:CDS | 50.0% |
| ! | GGAGTTTGTTTCTTCGGCGT+CGG | - | chr4.3:19216643-19216662 | None:intergenic | 50.0% |
| ! | GTCGTGGATATTGTTCGGTG+TGG | + | chr4.3:19217066-19217085 | MS.gene023122:CDS | 50.0% |
| ! | TTGGTGAGAGGTGTGAGTAG+AGG | - | chr4.3:19216474-19216493 | None:intergenic | 50.0% |
| !! | ACCGATGTTTGATGGTGTCG+TGG | + | chr4.3:19217050-19217069 | MS.gene023122:CDS | 50.0% |
| !! | AGCGAAATCGGTTTTACGGC+TGG | + | chr4.3:19216870-19216889 | MS.gene023122:CDS | 50.0% |
| !! | AGGTGGAGGGTATTTGTGGT+TGG | + | chr4.3:19217161-19217180 | MS.gene023122:CDS | 50.0% |
| !! | CGAAATCGGTTTTACGGCTG+GGG | + | chr4.3:19216872-19216891 | MS.gene023122:CDS | 50.0% |
| !! | CTTGATGTTGGTGGTGGTAC+TGG | + | chr4.3:19216895-19216914 | MS.gene023122:CDS | 50.0% |
| !! | GATAGAGTGTTGAGAGGTGG+AGG | + | chr4.3:19217147-19217166 | MS.gene023122:CDS | 50.0% |
| !! | GCGAAATCGGTTTTACGGCT+GGG | + | chr4.3:19216871-19216890 | MS.gene023122:CDS | 50.0% |
| !! | GGATATTGTTCGGTGTGGGA+GGG | + | chr4.3:19217071-19217090 | MS.gene023122:CDS | 50.0% |
| !! | GGGATTGGTGGAAGTGGTTT+TGG | - | chr4.3:19216337-19216356 | None:intergenic | 50.0% |
| !! | TGAGAGGTGGAGGGTATTTG+TGG | + | chr4.3:19217157-19217176 | MS.gene023122:CDS | 50.0% |
| !! | TGGATATTGTTCGGTGTGGG+AGG | + | chr4.3:19217070-19217089 | MS.gene023122:CDS | 50.0% |
| !! | TGGTGGTACTGGCTCATTTG+CGG | + | chr4.3:19216906-19216925 | MS.gene023122:CDS | 50.0% |
| AACGCAACCGCCTCACTGTA+AGG | - | chr4.3:19216988-19217007 | None:intergenic | 55.0% | |
| ACAGTGAGGCGGTTGCGTTA+AGG | + | chr4.3:19216989-19217008 | MS.gene023122:CDS | 55.0% | |
| AGTGAGGCGGTTGCGTTAAG+GGG | + | chr4.3:19216991-19217010 | MS.gene023122:CDS | 55.0% | |
| AGTTGACGGAGGAGTTCGTC+GGG | - | chr4.3:19216358-19216377 | None:intergenic | 55.0% | |
| ATCGGTAACCGCTGCTGCAA+CGG | - | chr4.3:19217036-19217055 | None:intergenic | 55.0% | |
| CAGTGAGGCGGTTGCGTTAA+GGG | + | chr4.3:19216990-19217009 | MS.gene023122:CDS | 55.0% | |
| GGGATTGGAGAGTTGTGGAG+AGG | - | chr4.3:19216306-19216325 | None:intergenic | 55.0% | |
| TCAGCGAGCTCCGAATCAGA+AGG | - | chr4.3:19216568-19216587 | None:intergenic | 55.0% | |
| TGTAGCGCCTTACAGTGAGG+CGG | + | chr4.3:19216978-19216997 | MS.gene023122:CDS | 55.0% | |
| TTACGGCTGGGGCTTGATGT+TGG | + | chr4.3:19216883-19216902 | MS.gene023122:CDS | 55.0% | |
| TTGCGGCGGCGATGAAAGTA+CGG | + | chr4.3:19216923-19216942 | MS.gene023122:CDS | 55.0% | |
| ! | GGCGGTGAATCGATGGATTC+CGG | + | chr4.3:19217092-19217111 | MS.gene023122:CDS | 55.0% |
| !! | TATTGTTCGGTGTGGGAGGG+CGG | + | chr4.3:19217074-19217093 | MS.gene023122:CDS | 55.0% |
| !! | TGGTACTGGCTCATTTGCGG+CGG | + | chr4.3:19216909-19216928 | MS.gene023122:CDS | 55.0% |
| AGGAGTTCGTCGGGGATTGG+TGG | - | chr4.3:19216349-19216368 | None:intergenic | 60.0% | |
| GAGAGAAACAACGCCGGCGA+GGG | - | chr4.3:19216621-19216640 | None:intergenic | 60.0% | |
| GAGGCGCGTGAGGTGGTTAA+TGG | - | chr4.3:19216398-19216417 | None:intergenic | 60.0% | |
| GCGCGTGAGGTGGTTAATGG+TGG | - | chr4.3:19216395-19216414 | None:intergenic | 60.0% | |
| GCGTCGGAGAGAAACAACGC+CGG | - | chr4.3:19216627-19216646 | None:intergenic | 60.0% | |
| GTTGACGGAGGAGTTCGTCG+GGG | - | chr4.3:19216357-19216376 | None:intergenic | 60.0% | |
| GTTGTCATCCTCTCCCTCGC+CGG | + | chr4.3:19216605-19216624 | MS.gene023122:CDS | 60.0% | |
| ! | CTGGGGCTTGATGTTGGTGG+TGG | + | chr4.3:19216889-19216908 | MS.gene023122:CDS | 60.0% |
| ! | TCGTCGGGGATTGGTGGAAG+TGG | - | chr4.3:19216343-19216362 | None:intergenic | 60.0% |
| !!! | TGGTGTTTTGGAGGCGCGTG+AGG | - | chr4.3:19216408-19216427 | None:intergenic | 60.0% |
| !!! | TGTTTTGGAGGCGCGTGAGG+TGG | - | chr4.3:19216405-19216424 | None:intergenic | 60.0% |
| AAACAACGCCGGCGAGGGAG+AGG | - | chr4.3:19216616-19216635 | None:intergenic | 65.0% | |
| CGGAGGAGTTCGTCGGGGAT+TGG | - | chr4.3:19216352-19216371 | None:intergenic | 65.0% | |
| CGGCTGGGGCTTGATGTTGG+TGG | + | chr4.3:19216886-19216905 | MS.gene023122:CDS | 65.0% | |
| GGAGAGAAACAACGCCGGCG+AGG | - | chr4.3:19216622-19216641 | None:intergenic | 65.0% | |
| GTGGGAGGGCGGTGAATCGA+TGG | + | chr4.3:19217085-19217104 | MS.gene023122:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19216220 | 19217353 | 19216220 | ID=MS.gene023122 |
| chr4.3 | mRNA | 19216220 | 19217353 | 19216220 | ID=MS.gene023122.t1;Parent=MS.gene023122 |
| chr4.3 | exon | 19216220 | 19217353 | 19216220 | ID=MS.gene023122.t1.exon1;Parent=MS.gene023122.t1 |
| chr4.3 | CDS | 19216220 | 19217353 | 19216220 | ID=cds.MS.gene023122.t1;Parent=MS.gene023122.t1 |
| Gene Sequence |
| Protein sequence |
