Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64194.t1 | XP_013466170.1 | 98.4 | 426 | 6 | 1 | 1 | 425 | 1 | 426 | 1.10E-225 | 792.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64194.t1 | A0A072VF27 | 98.4 | 426 | 6 | 1 | 1 | 425 | 1 | 426 | 7.8e-226 | 792.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27044 | MS.gene64194 | PPI |
| MS.gene64194 | MS.gene028330 | PPI |
| MS.gene023122 | MS.gene64194 | PPI |
| MS.gene064739 | MS.gene64194 | PPI |
| MS.gene64194 | MS.gene014442 | PPI |
| MS.gene36460 | MS.gene64194 | PPI |
| MS.gene63991 | MS.gene64194 | PPI |
| MS.gene64194 | MS.gene069406 | PPI |
| MS.gene69420 | MS.gene64194 | PPI |
| MS.gene35128 | MS.gene64194 | PPI |
| MS.gene24186 | MS.gene64194 | PPI |
| MS.gene014442 | MS.gene64194 | PPI |
| MS.gene069406 | MS.gene64194 | PPI |
| MS.gene42277 | MS.gene64194 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64194.t1 | MTR_1g024005 | 98.357 | 426 | 6 | 1 | 1 | 425 | 1 | 426 | 0.0 | 856 |
| MS.gene64194.t1 | MTR_3g113270 | 75.935 | 428 | 91 | 5 | 1 | 424 | 1 | 420 | 0.0 | 657 |
| MS.gene64194.t1 | MTR_3g071050 | 72.963 | 270 | 66 | 3 | 29 | 296 | 1 | 265 | 9.33e-140 | 400 |
| MS.gene64194.t1 | MTR_2g028610 | 37.383 | 428 | 231 | 8 | 30 | 423 | 34 | 458 | 1.14e-92 | 287 |
| MS.gene64194.t1 | MTR_2g028590 | 38.118 | 425 | 226 | 8 | 33 | 423 | 42 | 463 | 1.61e-92 | 287 |
| MS.gene64194.t1 | MTR_5g077710 | 44.127 | 315 | 162 | 7 | 119 | 424 | 76 | 385 | 1.12e-89 | 277 |
| MS.gene64194.t1 | MTR_8g028460 | 40.483 | 331 | 176 | 7 | 108 | 424 | 164 | 487 | 5.83e-80 | 255 |
| MS.gene64194.t1 | MTR_0010s0400 | 39.198 | 324 | 180 | 7 | 108 | 425 | 147 | 459 | 8.27e-78 | 249 |
| MS.gene64194.t1 | MTR_3g070620 | 76.471 | 136 | 29 | 2 | 227 | 360 | 54 | 188 | 2.33e-67 | 213 |
| MS.gene64194.t1 | MTR_4g094572 | 33.333 | 414 | 225 | 8 | 19 | 423 | 4 | 375 | 7.85e-65 | 213 |
| MS.gene64194.t1 | MTR_3g071100 | 68.293 | 41 | 12 | 1 | 207 | 247 | 24 | 63 | 9.94e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64194.t1 | AT3G27230 | 72.941 | 425 | 100 | 4 | 1 | 425 | 1 | 410 | 0.0 | 632 |
| MS.gene64194.t1 | AT5G40830 | 69.953 | 426 | 113 | 5 | 1 | 424 | 1 | 413 | 0.0 | 613 |
| MS.gene64194.t1 | AT5G40830 | 69.953 | 426 | 113 | 5 | 1 | 424 | 1 | 413 | 0.0 | 613 |
| MS.gene64194.t1 | AT5G40830 | 63.615 | 426 | 100 | 5 | 1 | 424 | 1 | 373 | 0.0 | 542 |
| MS.gene64194.t1 | AT3G05390 | 32.314 | 458 | 244 | 10 | 23 | 425 | 16 | 462 | 1.90e-79 | 253 |
| MS.gene64194.t1 | AT4G01240 | 39.697 | 330 | 179 | 7 | 108 | 424 | 334 | 656 | 7.87e-75 | 246 |
| MS.gene64194.t1 | AT1G29790 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 6.67e-70 | 226 |
| MS.gene64194.t1 | AT1G29790 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 6.67e-70 | 226 |
Find 64 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAGAAACTGATCTTAAA+AGG | 0.211099 | 1.3:-1413230 | MS.gene64194:CDS |
| TCAAACACATTGTCATAAAA+TGG | 0.248817 | 1.3:+1412756 | None:intergenic |
| TCCAAAACTGTTTCAAAATC+AGG | 0.251936 | 1.3:-1413176 | MS.gene64194:CDS |
| GGTTCAGTTTCACTGAAAAT+TGG | 0.255151 | 1.3:-1413728 | MS.gene64194:CDS |
| GGAGAGAAAGTTGATAGTTT+TGG | 0.265881 | 1.3:-1412534 | MS.gene64194:CDS |
| TTTGATATTGGTGGTGGTTC+AGG | 0.273729 | 1.3:-1412912 | MS.gene64194:CDS |
| CTAAAGGAAGTTGATGTCTT+TGG | 0.285958 | 1.3:+1413384 | None:intergenic |
| TGCGGGCCGGTGGTTTGTTT+TGG | 0.291218 | 1.3:-1412650 | MS.gene64194:CDS |
| CTGGTGCTTGTCCTGATGAT+TGG | 0.293180 | 1.3:-1413259 | MS.gene64194:CDS |
| CAAAGACATCAACTTCCTTT+AGG | 0.332526 | 1.3:-1413383 | MS.gene64194:CDS |
| TTTACTTGAGCTTAGATCAT+AGG | 0.343285 | 1.3:-1412782 | MS.gene64194:CDS |
| GCAGCAATGAATTCACTAAA+TGG | 0.344054 | 1.3:+1412822 | None:intergenic |
| GGAAATGGTGGAATTAGAAT+AGG | 0.346150 | 1.3:-1412936 | MS.gene64194:CDS |
| TTCAGCTCATTTGCAATGTT+GGG | 0.356522 | 1.3:+1413416 | None:intergenic |
| CCATTCTTCAGAAACCAGTT+AGG | 0.362161 | 1.3:-1412482 | MS.gene64194:CDS |
| TTCATGAGTTACAAGGCTTC+TGG | 0.364603 | 1.3:-1413278 | MS.gene64194:CDS |
| GTTACTGTTGTTGGTGGTTG+TGG | 0.369532 | 1.3:+1413574 | None:intergenic |
| ATTAGAATAGGGTTTGATAT+TGG | 0.369699 | 1.3:-1412924 | MS.gene64194:CDS |
| TCTAACCTTCAACCCCTAAC+TGG | 0.373706 | 1.3:+1412468 | None:intergenic |
| GAAATGGTGGAATTAGAATA+GGG | 0.380459 | 1.3:-1412935 | MS.gene64194:CDS |
| TTGGATATAAGAAATTGAAA+TGG | 0.387064 | 1.3:-1412563 | MS.gene64194:CDS |
| ACAAGGTTGATTGAAAGGTT+TGG | 0.388153 | 1.3:-1412582 | MS.gene64194:CDS |
| TTAGGCAAGGATTCAAGAAC+TGG | 0.392044 | 1.3:-1413365 | MS.gene64194:CDS |
| TTTCAGCTCATTTGCAATGT+TGG | 0.396349 | 1.3:+1413415 | None:intergenic |
| TGGATATAAGAAATTGAAAT+GGG | 0.396901 | 1.3:-1412562 | MS.gene64194:CDS |
| AAGATTAAGGTTACTGTTGT+TGG | 0.413130 | 1.3:+1413565 | None:intergenic |
| AGAGGCTTCCAAAGAGAAAC+AGG | 0.426242 | 1.3:+1413140 | None:intergenic |
| GTTTCTCTTTGGAAGCCTCT+TGG | 0.431268 | 1.3:-1413137 | MS.gene64194:CDS |
| CTCTAACAAGGTTGATTGAA+AGG | 0.444624 | 1.3:-1412587 | MS.gene64194:CDS |
| TAAGAAATTGAAATGGGTTG+TGG | 0.451047 | 1.3:-1412556 | MS.gene64194:CDS |
| CATTCTTCAGAAACCAGTTA+GGG | 0.456557 | 1.3:-1412481 | MS.gene64194:CDS |
| AGAAACCAGTTAGGGGTTGA+AGG | 0.456670 | 1.3:-1412473 | None:intergenic |
| AAGAAATTGAAATGGGTTGT+GGG | 0.464176 | 1.3:-1412555 | MS.gene64194:CDS |
| AAGGAAGTTGATGTCTTTGG+AGG | 0.474654 | 1.3:+1413387 | None:intergenic |
| GTTCTTGAATCCTTGCCTAA+AGG | 0.475247 | 1.3:+1413368 | None:intergenic |
| TGCATCAACATTAAGAGTAT+TGG | 0.482891 | 1.3:+1412845 | None:intergenic |
| CTCAGAAACTGATCTTAAAA+GGG | 0.485828 | 1.3:-1413229 | MS.gene64194:CDS |
| TGGAGGAAAAGCTGAAAAGT+TGG | 0.486068 | 1.3:-1412703 | MS.gene64194:CDS |
| AGAATAGGGTTTGATATTGG+TGG | 0.487533 | 1.3:-1412921 | MS.gene64194:CDS |
| AAGAACTGGGATCACTGAAA+TGG | 0.496871 | 1.3:-1413351 | MS.gene64194:CDS |
| TGATCTAAGCTCAAGTAAAG+TGG | 0.497485 | 1.3:+1412786 | None:intergenic |
| CCTAACTGGTTTCTGAAGAA+TGG | 0.500091 | 1.3:+1412482 | None:intergenic |
| AAACACCTTCTTCTAGGTAA+AGG | 0.509198 | 1.3:+1413200 | None:intergenic |
| ATAGGGTTTGATATTGGTGG+TGG | 0.514507 | 1.3:-1412918 | MS.gene64194:CDS |
| TGAGCTACACTCCAATCATC+AGG | 0.519786 | 1.3:+1413248 | None:intergenic |
| GATTCATGCATCAAGTGCAT+TGG | 0.520145 | 1.3:-1412730 | MS.gene64194:CDS |
| TCAAAAGAAACTAGCCCAGA+TGG | 0.525921 | 1.3:-1413480 | MS.gene64194:CDS |
| GTTTCACTGAAAATTGGAGA+TGG | 0.532703 | 1.3:-1413722 | MS.gene64194:CDS |
| GTCACAGTTCATGAGTTACA+AGG | 0.534645 | 1.3:-1413285 | MS.gene64194:CDS |
| TTCCAAAGAGAAACAGGAAA+AGG | 0.536142 | 1.3:+1413146 | None:intergenic |
| ATTAAGGTTACTGTTGTTGG+TGG | 0.540761 | 1.3:+1413568 | None:intergenic |
| ACATCAACTTCCTTTAGGCA+AGG | 0.546386 | 1.3:-1413378 | MS.gene64194:CDS |
| AGTGAATTCATTGCTGCTAG+AGG | 0.555907 | 1.3:-1412816 | MS.gene64194:CDS |
| GCATCAAGTGCATTGGATGT+TGG | 0.560273 | 1.3:-1412723 | MS.gene64194:CDS |
| GTGAGCCTTTACCTAGAAGA+AGG | 0.567293 | 1.3:-1413205 | MS.gene64194:CDS |
| ACTGAAATGGTGTCATCAGT+TGG | 0.572185 | 1.3:-1413338 | MS.gene64194:CDS |
| TGTTGTTGGTGGTTGTGGTG+TGG | 0.584228 | 1.3:+1413579 | None:intergenic |
| TTAAAAGTGTTATTACCAAG+AGG | 0.586025 | 1.3:+1413122 | None:intergenic |
| TGAGAATCAGAGATTTGTGA+AGG | 0.606302 | 1.3:-1413003 | MS.gene64194:CDS |
| ATCAAGCCAAAACAAACCAC+CGG | 0.614460 | 1.3:+1412644 | None:intergenic |
| TCAAGTGCATTGGATGTTGG+AGG | 0.648963 | 1.3:-1412720 | MS.gene64194:CDS |
| TAGGCAAGGATTCAAGAACT+GGG | 0.665439 | 1.3:-1413364 | MS.gene64194:CDS |
| AGAAGAAACAAACTCTAACA+AGG | 0.679763 | 1.3:-1412599 | MS.gene64194:CDS |
| ATTCTTCAGAAACCAGTTAG+GGG | 0.694148 | 1.3:-1412480 | MS.gene64194:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTAAAAATGATTTTT+TGG | - | chr1.3:1413228-1413247 | MS.gene64194:CDS | 10.0% |
| !! | TGGATATAAGAAATTGAAAT+GGG | - | chr1.3:1413645-1413664 | MS.gene64194:CDS | 20.0% |
| !! | TTGGATATAAGAAATTGAAA+TGG | - | chr1.3:1413644-1413663 | MS.gene64194:CDS | 20.0% |
| !!! | TTGGTAATAACACTTTTAAT+TGG | - | chr1.3:1413089-1413108 | MS.gene64194:CDS | 20.0% |
| !!! | TTGTGTAAATTGTTTTGATT+TGG | - | chr1.3:1413168-1413187 | MS.gene64194:CDS | 20.0% |
| ! | ATTAGAATAGGGTTTGATAT+TGG | - | chr1.3:1413283-1413302 | MS.gene64194:CDS | 25.0% |
| ! | TCAAACACATTGTCATAAAA+TGG | + | chr1.3:1413454-1413473 | None:intergenic | 25.0% |
| !!! | AAGAGTTTTGAATGTTTGAA+AGG | - | chr1.3:1413127-1413146 | MS.gene64194:CDS | 25.0% |
| !!! | AATAACACTTTTAATTGGAG+TGG | - | chr1.3:1413094-1413113 | MS.gene64194:CDS | 25.0% |
| !!! | AATTGTTTTGATTTGGTTAG+TGG | - | chr1.3:1413175-1413194 | MS.gene64194:CDS | 25.0% |
| !!! | AGATGTTTTTGTGAAGATTA+AGG | + | chr1.3:1412658-1412677 | None:intergenic | 25.0% |
| !!! | TTAAAAGTGTTATTACCAAG+AGG | + | chr1.3:1413088-1413107 | None:intergenic | 25.0% |
| AAGATTAAGGTTACTGTTGT+TGG | + | chr1.3:1412645-1412664 | None:intergenic | 30.0% | |
| AGAAGAAACAAACTCTAACA+AGG | - | chr1.3:1413608-1413627 | MS.gene64194:CDS | 30.0% | |
| CTCAGAAACTGATCTTAAAA+GGG | - | chr1.3:1412978-1412997 | MS.gene64194:CDS | 30.0% | |
| TCCAAAACTGTTTCAAAATC+AGG | - | chr1.3:1413031-1413050 | MS.gene64194:CDS | 30.0% | |
| TTTACTTGAGCTTAGATCAT+AGG | - | chr1.3:1413425-1413444 | MS.gene64194:CDS | 30.0% | |
| ! | GAAATGGTGGAATTAGAATA+GGG | - | chr1.3:1413272-1413291 | MS.gene64194:CDS | 30.0% |
| ! | TGCATCAACATTAAGAGTAT+TGG | + | chr1.3:1413365-1413384 | None:intergenic | 30.0% |
| !! | AAGAAATTGAAATGGGTTGT+GGG | - | chr1.3:1413652-1413671 | MS.gene64194:CDS | 30.0% |
| !! | TAAGAAATTGAAATGGGTTG+TGG | - | chr1.3:1413651-1413670 | MS.gene64194:CDS | 30.0% |
| !!! | AAAGTTGATAGTTTTGGATC+AGG | - | chr1.3:1413679-1413698 | MS.gene64194:CDS | 30.0% |
| !!! | ACCTGATTTTGAAACAGTTT+TGG | + | chr1.3:1413035-1413054 | None:intergenic | 30.0% |
| !!! | GATGTTTTAGCATTAGGAAA+TGG | - | chr1.3:1413256-1413275 | MS.gene64194:CDS | 30.0% |
| !!! | GTTGATGATGTTTTAGCATT+AGG | - | chr1.3:1413250-1413269 | MS.gene64194:CDS | 30.0% |
| AAACACCTTCTTCTAGGTAA+AGG | + | chr1.3:1413010-1413029 | None:intergenic | 35.0% | |
| AGAATAGGGTTTGATATTGG+TGG | - | chr1.3:1413286-1413305 | MS.gene64194:CDS | 35.0% | |
| ATTAAGGTTACTGTTGTTGG+TGG | + | chr1.3:1412642-1412661 | None:intergenic | 35.0% | |
| ATTCTTCAGAAACCAGTTAG+GGG | - | chr1.3:1413727-1413746 | MS.gene64194:CDS | 35.0% | |
| CAAAGACATCAACTTCCTTT+AGG | - | chr1.3:1412824-1412843 | MS.gene64194:CDS | 35.0% | |
| CATTCTTCAGAAACCAGTTA+GGG | - | chr1.3:1413726-1413745 | MS.gene64194:CDS | 35.0% | |
| GCAGCAATGAATTCACTAAA+TGG | + | chr1.3:1413388-1413407 | None:intergenic | 35.0% | |
| GCTCAGAAACTGATCTTAAA+AGG | - | chr1.3:1412977-1412996 | MS.gene64194:CDS | 35.0% | |
| GGTTCAGTTTCACTGAAAAT+TGG | - | chr1.3:1412479-1412498 | MS.gene64194:CDS | 35.0% | |
| GTTTCACTGAAAATTGGAGA+TGG | - | chr1.3:1412485-1412504 | MS.gene64194:CDS | 35.0% | |
| TGAGAATCAGAGATTTGTGA+AGG | - | chr1.3:1413204-1413223 | MS.gene64194:CDS | 35.0% | |
| TGATCTAAGCTCAAGTAAAG+TGG | + | chr1.3:1413424-1413443 | None:intergenic | 35.0% | |
| TTCAGCTCATTTGCAATGTT+GGG | + | chr1.3:1412794-1412813 | None:intergenic | 35.0% | |
| TTCCAAAGAGAAACAGGAAA+AGG | + | chr1.3:1413064-1413083 | None:intergenic | 35.0% | |
| TTGGAAAAACACCTTCTTCT+AGG | + | chr1.3:1413016-1413035 | None:intergenic | 35.0% | |
| TTTCAGCTCATTTGCAATGT+TGG | + | chr1.3:1412795-1412814 | None:intergenic | 35.0% | |
| ! | ACAAGGTTGATTGAAAGGTT+TGG | - | chr1.3:1413625-1413644 | MS.gene64194:CDS | 35.0% |
| ! | CTCTAACAAGGTTGATTGAA+AGG | - | chr1.3:1413620-1413639 | MS.gene64194:CDS | 35.0% |
| ! | GGAAATGGTGGAATTAGAAT+AGG | - | chr1.3:1413271-1413290 | MS.gene64194:CDS | 35.0% |
| ! | TTGATATCGATCGAGTTTTG+CGG | - | chr1.3:1413539-1413558 | MS.gene64194:CDS | 35.0% |
| !! | CTAAAGGAAGTTGATGTCTT+TGG | + | chr1.3:1412826-1412845 | None:intergenic | 35.0% |
| !! | GTTTTAGCATTAGGAAATGG+TGG | - | chr1.3:1413259-1413278 | MS.gene64194:CDS | 35.0% |
| !! | TTCCTTTTCCTGTTTCTCTT+TGG | - | chr1.3:1413059-1413078 | MS.gene64194:CDS | 35.0% |
| !!! | AAGAAGCTGTTTTTCCATCT+GGG | + | chr1.3:1412744-1412763 | None:intergenic | 35.0% |
| !!! | GGAGAGAAAGTTGATAGTTT+TGG | - | chr1.3:1413673-1413692 | MS.gene64194:CDS | 35.0% |
| !!! | TGTTTTGATTTGGTTAGTGG+TGG | - | chr1.3:1413178-1413197 | MS.gene64194:CDS | 35.0% |
| AAGAACTGGGATCACTGAAA+TGG | - | chr1.3:1412856-1412875 | MS.gene64194:CDS | 40.0% | |
| ACATCAACTTCCTTTAGGCA+AGG | - | chr1.3:1412829-1412848 | MS.gene64194:CDS | 40.0% | |
| AGTGAATTCATTGCTGCTAG+AGG | - | chr1.3:1413391-1413410 | MS.gene64194:CDS | 40.0% | |
| ATAGGGTTTGATATTGGTGG+TGG | - | chr1.3:1413289-1413308 | MS.gene64194:CDS | 40.0% | |
| ATCAAGCCAAAACAAACCAC+CGG | + | chr1.3:1413566-1413585 | None:intergenic | 40.0% | |
| CAGATGGAAAAACAGCTTCT+TGG | - | chr1.3:1412743-1412762 | MS.gene64194:CDS | 40.0% | |
| CCATTCTTCAGAAACCAGTT+AGG | - | chr1.3:1413725-1413744 | MS.gene64194:CDS | 40.0% | |
| GATTCATGCATCAAGTGCAT+TGG | - | chr1.3:1413477-1413496 | MS.gene64194:CDS | 40.0% | |
| GTCACAGTTCATGAGTTACA+AGG | - | chr1.3:1412922-1412941 | MS.gene64194:CDS | 40.0% | |
| GTTCTTGAATCCTTGCCTAA+AGG | + | chr1.3:1412842-1412861 | None:intergenic | 40.0% | |
| TAGGCAAGGATTCAAGAACT+GGG | - | chr1.3:1412843-1412862 | MS.gene64194:CDS | 40.0% | |
| TCAAAAGAAACTAGCCCAGA+TGG | - | chr1.3:1412727-1412746 | MS.gene64194:CDS | 40.0% | |
| TGGAGGAAAAGCTGAAAAGT+TGG | - | chr1.3:1413504-1413523 | MS.gene64194:CDS | 40.0% | |
| TTAGGCAAGGATTCAAGAAC+TGG | - | chr1.3:1412842-1412861 | MS.gene64194:CDS | 40.0% | |
| TTCATGAGTTACAAGGCTTC+TGG | - | chr1.3:1412929-1412948 | MS.gene64194:CDS | 40.0% | |
| ! | CCTAACTGGTTTCTGAAGAA+TGG | + | chr1.3:1413728-1413747 | None:intergenic | 40.0% |
| ! | TGATATCGATCGAGTTTTGC+GGG | - | chr1.3:1413540-1413559 | MS.gene64194:CDS | 40.0% |
| !! | AAGGAAGTTGATGTCTTTGG+AGG | + | chr1.3:1412823-1412842 | None:intergenic | 40.0% |
| !! | ACTGAAATGGTGTCATCAGT+TGG | - | chr1.3:1412869-1412888 | MS.gene64194:CDS | 40.0% |
| !! | TTTGATATTGGTGGTGGTTC+AGG | - | chr1.3:1413295-1413314 | MS.gene64194:CDS | 40.0% |
| !!! | CAAGAAGCTGTTTTTCCATC+TGG | + | chr1.3:1412745-1412764 | None:intergenic | 40.0% |
| AGAGGCTTCCAAAGAGAAAC+AGG | + | chr1.3:1413070-1413089 | None:intergenic | 45.0% | |
| GCATCAAGTGCATTGGATGT+TGG | - | chr1.3:1413484-1413503 | MS.gene64194:CDS | 45.0% | |
| GTGAGCCTTTACCTAGAAGA+AGG | - | chr1.3:1413002-1413021 | MS.gene64194:CDS | 45.0% | |
| TCAAGTGCATTGGATGTTGG+AGG | - | chr1.3:1413487-1413506 | MS.gene64194:CDS | 45.0% | |
| TGAGCTACACTCCAATCATC+AGG | + | chr1.3:1412962-1412981 | None:intergenic | 45.0% | |
| ! | GTTTCTCTTTGGAAGCCTCT+TGG | - | chr1.3:1413070-1413089 | MS.gene64194:CDS | 45.0% |
| !! | GTTACTGTTGTTGGTGGTTG+TGG | + | chr1.3:1412636-1412655 | None:intergenic | 45.0% |
| CTGGTGCTTGTCCTGATGAT+TGG | - | chr1.3:1412948-1412967 | MS.gene64194:CDS | 50.0% | |
| ! | GGTTGTGGTGTGGCTTTTTG+AGG | + | chr1.3:1412621-1412640 | None:intergenic | 50.0% |
| !! | TGTTGTTGGTGGTTGTGGTG+TGG | + | chr1.3:1412631-1412650 | None:intergenic | 50.0% |
| ! | ATCGATCGAGTTTTGCGGGC+CGG | - | chr1.3:1413544-1413563 | MS.gene64194:CDS | 55.0% |
| !!! | TGCGGGCCGGTGGTTTGTTT+TGG | - | chr1.3:1413557-1413576 | MS.gene64194:CDS | 60.0% |
| ! | GATCGAGTTTTGCGGGCCGG+TGG | - | chr1.3:1413547-1413566 | MS.gene64194:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1412476 | 1413753 | 1412476 | ID=MS.gene64194 |
| chr1.3 | mRNA | 1412476 | 1413753 | 1412476 | ID=MS.gene64194.t1;Parent=MS.gene64194 |
| chr1.3 | exon | 1412476 | 1413753 | 1412476 | ID=MS.gene64194.t1.exon1;Parent=MS.gene64194.t1 |
| chr1.3 | CDS | 1412476 | 1413753 | 1412476 | ID=cds.MS.gene64194.t1;Parent=MS.gene64194.t1 |
| Gene Sequence |
| Protein sequence |
